Class | Description |
---|---|
ActivateScheme |
Activates a coding scheme based on unique URN and version.
|
BuildAssertedValueSetIndex |
Builds indexes associated with the source asserted
value sets of the specified coding scheme.
|
CleanUpMetadataLauncher | |
CodingSchemeSelectionMenu |
Helper class used to display a list of available code systems and return the
user selection.
|
DeactivateScheme |
Deactivates a coding scheme based on unique URN and version.
|
ExportLgXML |
ExportLgXML
Exports content from the repository to a file in the LexGrid canonical XML format.
|
ExportOBO |
Exports content from the repository to a file in the Open Biomedical
Ontologies (OBO) format.
|
ExportOwlRdf | |
ListExtensions |
List registered extensions to the LexBIG runtime.
|
ListLexevsVersion |
List the LexEVS version number and build timestamp
Example: ListLexevsVersion
|
ListSchemes |
List all currently registered vocabularies.
|
Load | |
LoadLgXML |
Imports the source file, provided in LexGrid canonical format, to the LexBIG
repository.
|
LoadManifest |
Load manifest data onto the codingscheme based on unique URN and version.
|
LoadMedDRA | |
LoadMetaBatchWithMetadata |
Loads NCI Metathesaurus content, provided as a collection of RRF files in a
single directory.
|
LoadMetadata |
Loads optional XML-based metadata to be associated with an existing coding
scheme.
|
LoadMIFVocabulary | |
LoadMrMap |
Loads a mappings file(s), provided in UMLS RRF format.
|
LoadNCIHistory |
Imports NCI History data to the LexBIG repository.
|
LoadOBO |
Imports a file specified in the Open Biomedical Ontologies (OBO) format to
the LexBIG repository.
|
LoadOWL |
Imports from an OWL-based XML file to the LexBIG repository.
|
LoadOWL2 |
Imports from an OWL-based XML file to the LexBIG repository.
|
LoadText | |
LoadUmlsBatchWithMetadata |
Loads UMLS content, provided as a collection of RRF files in a
single directory.
|
LoadUMLSHistory |
Loads UMLS History
Example: java org.LexGrid.LexBIG.admin.LoadOWL
-in,--input <uri> URI or path specifying location of the source file
-v, --validate <int> Perform validation of the candidate
resource without loading data.
|
LoadUMLSSemnet |
Loads the UMLS Semantic Network, provided as a collection of files in a
single directory.
|
PasswordEncryptor | |
RebuildIndex |
Rebuilds indexes associated with the specified coding scheme.
|
RebuildTransitivityTable |
Rebuilds the Transitivity Table associated with the specified coding scheme.
|
RemoveIndex |
Clears an optional named index associated with the specified coding scheme.
|
RemoveMetadata |
Clears optionally loaded metadata associated with the specified coding
scheme.
|
RemoveScheme |
Removes a coding scheme based on unique URN and version.
|
RemoveTagScheme |
Removes a tag ID (e.g.
|
SourceAssertedValueSetDefinitionLauncher | |
SupplementScheme |
Utility to register, unregister, and list Coding Scheme Supplements
usage: SupplementScheme [-parentUri parentUri] [-r] [-supplementUri
supplementUri] [-parentVersion parentVersion] [-l] [-supplementVersion
supplementVersion] [-u]
-l,--list List Supplements
-parentUri
|
TagScheme |
Associates a tag ID (e.g.
|
TestAdminUtilDisplayAndLog | |
TestEhcacheStartUpOutputRemoval | |
TransferScheme |
Assists in transferring a terminology from one server to another.
|
Util |
Common utility functions required by admin tasks.
|