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abbreviateFromMiddle(String, String, int) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
abbreviation - Variable in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
ABBREVIATION_CTX - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
abort(Executor) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
AbsoluteCodingSchemeVersionReference - Class in org.LexGrid.LexBIG.DataModel.Core
An absolute reference to a coding scheme.
AbsoluteCodingSchemeVersionReference() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference
 
AbsoluteCodingSchemeVersionReferenceDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class AbsoluteCodingSchemeVersionReferenceDescriptor.
AbsoluteCodingSchemeVersionReferenceDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
 
AbsoluteCodingSchemeVersionReferenceList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class AbsoluteCodingSchemeVersionReferenceList.
AbsoluteCodingSchemeVersionReferenceList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
AbsoluteCodingSchemeVersionReferenceListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class AbsoluteCodingSchemeVersionReferenceListDescriptor.
AbsoluteCodingSchemeVersionReferenceListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
 
AbstraceSqlImplementedMethodsDao - Class in org.lexevs.dao.database.sqlimplementedmethods
The Class AbstraceSqlImplementedMethodsDao.
AbstraceSqlImplementedMethodsDao() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
 
AbstractAssertedVSResolvedConceptReferenceIterator<T> - Class in org.lexevs.paging
 
AbstractAssertedVSResolvedConceptReferenceIterator() - Constructor for class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Instantiates a new abstract pageable iterator.
AbstractAssertedVSResolvedConceptReferenceIterator(int) - Constructor for class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Instantiates a new abstract pageable iterator.
AbstractAssertedVSResolvedConceptReferenceIterator.Pager<T> - Class in org.lexevs.paging
The Class Pager.
AbstractAssertedVSResolvedConceptReferenceIterator.RemainingRefresher<T> - Class in org.lexevs.paging
 
AbstractAssociationQualifierResolver<I> - Class in org.lexgrid.loader.processor.support
 
AbstractAssociationQualifierResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractAssociationQualifierResolver
 
AbstractBaseDao - Class in org.lexevs.dao.database.access
The Class AbstractBaseDao.
AbstractBaseDao() - Constructor for class org.lexevs.dao.database.access.AbstractBaseDao
 
AbstractBaseIndexDao - Class in org.lexevs.dao.index.access
The Class AbstractBaseIndexDao.
AbstractBaseIndexDao() - Constructor for class org.lexevs.dao.index.access.AbstractBaseIndexDao
 
AbstractBaseLuceneIndexTemplateDao - Class in org.lexevs.dao.index.lucene
 
AbstractBaseLuceneIndexTemplateDao() - Constructor for class org.lexevs.dao.index.lucene.AbstractBaseLuceneIndexTemplateDao
 
AbstractBaseOption<T> - Class in edu.mayo.informatics.lexgrid.convert.options
The Class AbstractOption.
AbstractBaseOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
Instantiates a new abstract option.
AbstractBaseOption(String, T) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
Instantiates a new abstract option.
AbstractBaseOption(String, T, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
AbstractBasicAssociationResolver<I> - Class in org.lexgrid.loader.processor.support
The Class AbstractBasicAssociationResolver.
AbstractBasicAssociationResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
AbstractBasicEntityResolver<T> - Class in org.lexgrid.loader.processor.support
The Class AbstractBasicEntityResolver.
AbstractBasicEntityResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
 
AbstractBasicPropertyResolver<I> - Class in org.lexgrid.loader.processor.support
The Class AbstractBasicPropertyResolver.
AbstractBasicPropertyResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
AbstractBigIntKeyIncrementer - Class in org.lexevs.dao.database.key.incrementer
The Class AbstractBigIntKeyIncrementer.
AbstractBigIntKeyIncrementer() - Constructor for class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
AbstractCachingValueSetDefinitionCompilerDecorator - Class in org.lexgrid.valuesets.helper.compiler
The Class CachingValueSetDefinitionCompilerDecorator.
AbstractCachingValueSetDefinitionCompilerDecorator(ValueSetDefinitionCompiler, VSDServiceHelper) - Constructor for class org.lexgrid.valuesets.helper.compiler.AbstractCachingValueSetDefinitionCompilerDecorator
Instantiates a new caching value set definition compiler decorator.
AbstractCodedNodeGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class AbstractCodedNodeGraph.
AbstractCodedNodeGraph() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
AbstractCodingSchemeIdHolderWriter<T> - Class in org.lexgrid.loader.writer
 
AbstractCodingSchemeIdHolderWriter() - Constructor for class org.lexgrid.loader.writer.AbstractCodingSchemeIdHolderWriter
 
AbstractCodingSchemeInserter - Class in edu.mayo.informatics.lexgrid.convert.inserter
The Class AbstractCodingSchemeInserter.
AbstractCodingSchemeInserter() - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
 
AbstractContainsSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractContainsSearch.
AbstractContainsSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractContainsSearch
 
AbstractCycleDetectingCallback - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
The Class AbstractCycleDetectingCallback.
AbstractCycleDetectingCallback() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback
 
AbstractCycleDetectingCallback.AssociatedConceptKey - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
The Class AssociatedConceptKey.
AbstractDatabaseService - Class in org.lexevs.dao.database.service
The Class AbstractDatabaseService.
AbstractDatabaseService() - Constructor for class org.lexevs.dao.database.service.AbstractDatabaseService
 
AbstractDatabaseServiceWriter - Class in org.lexgrid.loader.writer
 
AbstractDatabaseServiceWriter() - Constructor for class org.lexgrid.loader.writer.AbstractDatabaseServiceWriter
 
AbstractEditDialog<T> - Class in org.LexGrid.LexBIG.gui.edit
 
AbstractEditDialog(LB_GUI, String, boolean, String, Shell, DialogHandler) - Constructor for class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
AbstractEndNode - Class in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
AbstractEndNode(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.root.AbstractEndNode
 
AbstractEndNode.Root - Class in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
AbstractEndNode.Tail - Class in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
AbstractError - Class in edu.mayo.informatics.lexgrid.convert.validator.error
The Class AbstractError.
AbstractError(Object) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.AbstractError
 
AbstractError(String, Object, Exception) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.AbstractError
 
AbstractExactMatchBoostingSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractExactMatchBoostingSearch.
AbstractExactMatchBoostingSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchBoostingSearch
 
AbstractExactMatchSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractExactMatchSearch.
AbstractExactMatchSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchSearch
 
AbstractExtendable - Class in org.LexGrid.LexBIG.Impl.Extensions
The Class AbstractExtendable.
AbstractExtendable() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
Instantiates a new abstract extendable.
AbstractFilteringLuceneIndexTemplateDao - Class in org.lexevs.dao.index.lucene
 
AbstractFilteringLuceneIndexTemplateDao() - Constructor for class org.lexevs.dao.index.lucene.AbstractFilteringLuceneIndexTemplateDao
 
AbstractIbatisDao - Class in org.lexevs.dao.database.ibatis
The Class AbstractIbatisDao.
AbstractIbatisDao() - Constructor for class org.lexevs.dao.database.ibatis.AbstractIbatisDao
 
AbstractIntrospectiveHardcodedValues - Class in org.lexgrid.loader.hardcodedvalues
The Class AbstractIntrospectiveHardcodedValues.
AbstractIntrospectiveHardcodedValues() - Constructor for class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
AbstractIsActiveSettingPostProcessor - Class in org.LexGrid.LexBIG.Impl.loaders.postprocessor
The Class AbstractIsActiveSettingPostProcessor.
AbstractIsActiveSettingPostProcessor() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
 
AbstractJoinQueryRestriction - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces
 
AbstractJoinQueryRestriction() - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces.AbstractJoinQueryRestriction
 
AbstractKeyIncrementer - Class in org.lexevs.dao.database.key.incrementer
The Class AbstractKeyIncrementer.
AbstractKeyIncrementer() - Constructor for class org.lexevs.dao.database.key.incrementer.AbstractKeyIncrementer
 
AbstractKeyValueProcessor<I> - Class in org.lexgrid.loader.staging.processor
The Class AbstractKeyValueProcessor.
AbstractKeyValueProcessor() - Constructor for class org.lexgrid.loader.staging.processor.AbstractKeyValueProcessor
 
AbstractLazyCodeHolderFactory - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
A factory for creating LazyCodeHolder objects.
AbstractLazyCodeHolderFactory() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyCodeHolderFactory
 
AbstractLazyLoadable - Class in org.lexevs.dao.database.lazyload
The Class AbstractLazyLoadable.
AbstractLazyLoadable() - Constructor for class org.lexevs.dao.database.lazyload.AbstractLazyLoadable
 
AbstractLazyLoadableCodeToReturn - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
The Class LazyLoadableCodeToReturn.
AbstractLazyLoadableCodeToReturn() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Instantiates a new lazy loadable code to return.
AbstractLazyLoadableCodeToReturn(ScoreDoc) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Instantiates a new lazy loadable code to return.
AbstractLazyLoadableCodeToReturn(float, int) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Instantiates a new lazy loadable code to return.
AbstractLesGridSchemaCheck - Class in org.lexevs.dao.database.setup.schemacheck
The Class AbstractLesGridSchemaCheck.
AbstractLesGridSchemaCheck() - Constructor for class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Instantiates a new abstract les grid schema check.
AbstractLesGridSchemaCheck(DataSource, SystemVariables) - Constructor for class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Instantiates a new abstract les grid schema check.
AbstractLexEvsUtilityTasklet - Class in org.lexgrid.loader.lexbigadmin
The Class IndexingTasklet.
AbstractLexEvsUtilityTasklet() - Constructor for class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
AbstractListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class AbstractListProcessor.
AbstractListProcessor() - Constructor for class org.lexgrid.loader.processor.AbstractListProcessor
 
AbstractLiteralSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractLiteralSearch.
AbstractLiteralSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
 
AbstractLoggingBean - Class in org.lexevs.logging
The Class LoggingBean.
AbstractLoggingBean() - Constructor for class org.lexevs.logging.AbstractLoggingBean
 
AbstractMappingClassifier<I,O> - Class in org.lexevs.dao.database.constants.classifier.mapping
The Class AbstractMappingClassifier.
AbstractMappingClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.mapping.AbstractMappingClassifier
 
AbstractMappingTripleIterator<T extends java.util.Iterator<java.lang.String>> - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class AbstractMappingTripleIterator.
AbstractMappingTripleIterator() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
Instantiates a new mapping triple iterator.
AbstractMappingTripleIterator(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class MappingAbsoluteCodingSchemeVersionReferences.
AbstractMethodCachingBean<T> - Class in org.lexevs.cache
The Class MethodCachingProxy.
AbstractMethodCachingBean() - Constructor for class org.lexevs.cache.AbstractMethodCachingBean
 
AbstractMrconsoNoCodeHandler - Class in org.lexgrid.loader.rrf.data.entity
The Class AbstractMrconsoNoCodeHandler.
AbstractMrconsoNoCodeHandler() - Constructor for class org.lexgrid.loader.rrf.data.entity.AbstractMrconsoNoCodeHandler
 
AbstractMrhierProcessor - Class in org.lexgrid.loader.rrf.processor
The Class AbstractMrhierProcessor.
AbstractMrhierProcessor() - Constructor for class org.lexgrid.loader.rrf.processor.AbstractMrhierProcessor
 
AbstractMultiGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class AbstractMultiGraph.
AbstractMultiGraph() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
AbstractMultiGraph(CodedNodeGraph, CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
Instantiates a new union graph.
AbstractMultiValueOption<T> - Class in edu.mayo.informatics.lexgrid.convert.options
The Class AbstractOption.
AbstractMultiValueOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
Instantiates a new abstract option.
AbstractMultiValueOption(String, List<T>) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
Instantiates a new abstract option.
AbstractNonProxyLazyCodeToReturn - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
The Class NonProxyLazyCodeToReturn.
AbstractNonProxyLazyCodeToReturn() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
AbstractNonProxyLazyCodeToReturn(ScoreDoc) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
AbstractNonProxyLazyCodeToReturn(float, int) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
AbstractNullValueSkippingResolver<T> - Class in org.lexgrid.loader.processor.support
The Class AbstractNullValueSkippingOptionalMultiAttribResolver.
AbstractNullValueSkippingResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractNullValueSkippingResolver
 
AbstractOption<T> - Class in edu.mayo.informatics.lexgrid.convert.options
The Class AbstractOption.
AbstractOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
Instantiates a new abstract option.
AbstractOption(String, T) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
Instantiates a new abstract option.
AbstractPageableIterator<T> - Class in org.lexevs.paging
The Class AbstractPageableIterator.
AbstractPageableIterator() - Constructor for class org.lexevs.paging.AbstractPageableIterator
Instantiates a new abstract pageable iterator.
AbstractPageableIterator(int) - Constructor for class org.lexevs.paging.AbstractPageableIterator
Instantiates a new abstract pageable iterator.
AbstractPageableIterator.NextDecorator<T> - Class in org.lexevs.paging
The Class NextDecorator.
AbstractPageableIterator.Pager<T> - Class in org.lexevs.paging
The Class Pager.
AbstractPageableIteratorTest - Class in org.lexevs.paging
 
AbstractPageableIteratorTest() - Constructor for class org.lexevs.paging.AbstractPageableIteratorTest
 
AbstractPagingCodingSchemeInserter - Class in edu.mayo.informatics.lexgrid.convert.inserter
The Class AbstractPagingCodingSchemeInserter.
AbstractPagingCodingSchemeInserter() - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
 
AbstractParameterPassingDoubleListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class AbstractParameterPassingDoubleListProcessor.
AbstractParameterPassingDoubleListProcessor() - Constructor for class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
 
AbstractParameterPassingListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class AbstractParameterPassingListProcessor.
AbstractParameterPassingListProcessor() - Constructor for class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
 
AbstractParentIdHolderWriter<T> - Class in org.lexgrid.loader.writer
 
AbstractParentIdHolderWriter() - Constructor for class org.lexgrid.loader.writer.AbstractParentIdHolderWriter
 
AbstractPreAssociationInsertValidatingListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving abstractPreAssociationInsertValidating events.
AbstractPreAssociationInsertValidatingListener() - Constructor for class org.lexevs.dao.database.service.listener.AbstractPreAssociationInsertValidatingListener
 
AbstractPreEntityInsertValidatingListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving abstractPreEntityInsertValidating events.
AbstractPreEntityInsertValidatingListener() - Constructor for class org.lexevs.dao.database.service.listener.AbstractPreEntityInsertValidatingListener
 
AbstractProcessRunner - Class in org.LexGrid.LexBIG.Impl.loaders
 
AbstractProcessRunner() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.AbstractProcessRunner
 
AbstractPropertyQualifierResolver<I> - Class in org.lexgrid.loader.processor.support
 
AbstractPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractPropertyQualifierResolver
 
AbstractQueryBuildingCodedNodeGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class AbstractQueryBuildingCodedNodeGraph.
AbstractQueryBuildingCodedNodeGraph() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
AbstractQueryBuildingCodedNodeGraph(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Instantiates a new paging coded node graph impl.
AbstractRefereshingPageableIterator<R,T> - Class in org.lexevs.paging
The Class AbstractRefereshingPageableIterator.
AbstractRefereshingPageableIterator(int) - Constructor for class org.lexevs.paging.AbstractRefereshingPageableIterator
Instantiates a new abstract refereshing pageable iterator.
AbstractRefereshingPageableIterator() - Constructor for class org.lexevs.paging.AbstractRefereshingPageableIterator
 
AbstractRefereshingPageableIterator.RefershingPager<R,T> - Class in org.lexevs.paging
The Class RefershingPager.
AbstractRefereshingPageableIterator.RefreshResult<R,T> - Class in org.lexevs.paging
The Class RefreshResult.
AbstractRefereshingPageableIteratorTest - Class in org.lexevs.paging
 
AbstractRefereshingPageableIteratorTest() - Constructor for class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
AbstractReproducibleIdResolver<T> - Class in org.lexgrid.loader.data.association
The Class AbstractReproducibleKeyResolver.
AbstractReproducibleIdResolver() - Constructor for class org.lexgrid.loader.data.association.AbstractReproducibleIdResolver
 
AbstractResolver<T> - Class in edu.mayo.informatics.lexgrid.convert.validator.resolution
The Class AbstractResolver.
AbstractResolver() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
 
AbstractRootNodeResolver - Class in org.lexgrid.loader.processor.support
 
AbstractRootNodeResolver() - Constructor for class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
AbstractRrfRelationResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class AbstractRrfRelationResolver.
AbstractRrfRelationResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
AbstractRrfRootNodeResolver - Class in org.lexgrid.loader.rrf.processor.support
 
AbstractRrfRootNodeResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.AbstractRrfRootNodeResolver
 
AbstractSabSkippingPolicy<I> - Class in org.lexgrid.loader.umls.reader.support
The Class AbstractSabSkippingPolicy.
AbstractSabSkippingPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.AbstractSabSkippingPolicy
 
AbstractSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractSearch.
AbstractSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Instantiates a new abstract search.
AbstractSearchTest - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractSearchTest.
AbstractSearchTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
 
AbstractSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
The Class AbstractSort.
AbstractSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
Instantiates a new abstract sort.
AbstractSortTest - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
The Class AbstractSortTest.
AbstractSortTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
 
AbstractSpringBatchLoader - Class in org.lexgrid.loader
The Class AbstractSpringBatchLoader.
AbstractSpringBatchLoader() - Constructor for class org.lexgrid.loader.AbstractSpringBatchLoader
 
AbstractSqlBuilder - Class in org.lexevs.tree.dao.sqlbuilder
Deprecated.
AbstractSqlBuilder() - Constructor for class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
 
AbstractSqlBuilder - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder
The Class AbstractSqlBuilder.
AbstractSqlBuilder() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
 
AbstractStartsWithSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractStartsWithSearch.
AbstractStartsWithSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractStartsWithSearch
 
AbstractSubStringSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class AbstractSubStringSearch.
AbstractSubStringSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
 
AbstractSupportedAttributeRegisteringProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class AbstractSupportedAttributeRegisteringProcessor.
AbstractSupportedAttributeRegisteringProcessor() - Constructor for class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
 
AbstractSupportedAttributeTemplate - Class in org.lexgrid.loader.dao.template
The Class AbstractSupportedAttributeTemplate.
AbstractSupportedAttributeTemplate() - Constructor for class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
AbstractSuppressPropertyQualifierResolver<T> - Class in org.lexgrid.loader.rrf.processor.support
The Class AbstractSuppressPropertyQualifierResolver.
AbstractSuppressPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.AbstractSuppressPropertyQualifierResolver
 
AbstractValidator<T> - Class in edu.mayo.informatics.lexgrid.convert.validator
The Class AbstractValidator.
AbstractValidator() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.AbstractValidator
 
acquireLock(String, String) - Method in class org.lexevs.registry.WriteLockManager
Lock an individual terminology for loading, indexing, etc.
activate(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.DatabaseRegistry
Activate.
activate(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Activate a code system.
activateCodingSchemeVersion(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
activateCodingSchemeVersion(AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Activate an inactive coding scheme version.
activateScheme(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Activate a given coding scheme
ActivateScheme - Class in org.LexGrid.LexBIG.admin
Activates a coding scheme based on unique URN and version.
ActivateScheme() - Constructor for class org.LexGrid.LexBIG.admin.ActivateScheme
 
ActiveOption - Class in org.LexGrid.LexBIG.DataModel.enums
pre-determined options for filtering active, inative or leaving filter neutral.
ActiveOption() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.ActiveOption
 
activeOption - Variable in class org.LexGrid.LexBIG.gui.restrictions.Status
 
ActiveOptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.enums.descriptors
Class ActiveOptionDescriptor.
ActiveOptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
 
add(String, List<DatabaseRecord>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.Database
 
add(ResolvedConceptReference) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
add(AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
add(AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
add(ResolvedConceptReference) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
add(AssociationSource) - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
add(ResolvedConceptReference) - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
add(Option) - Method in class edu.mayo.informatics.lexgrid.convert.formats.OptionHolder
 
add(CodingSchemeMetaData) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
add(Restriction, BooleanClause.Occur) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl.QueryBuilder
 
add(CodeToReturn) - Method in interface org.LexGrid.LexBIG.Impl.helpers.AdditiveCodeHolder
Adds the code.
add(CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
addAbsoluteCodingSchemeVersionReference(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
addAbsoluteCodingSchemeVersionReference(int, AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
addAll(String, List<LexEVSTreeItem>) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
addAll(String, List<BuildTreeForCode.TreeItem>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
addAll(String, List<BuildTreeForMetaCodeBySource.TreeItem>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
addAll(String, List<FindUMLSContextsForCUI.TreeItem>) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
addAll(AssociationList, AssociationList) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Add all associations in the source to the target list.
addAllowedFileExtensions(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.URIOption
 
addAllowedFileExtensions(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.URIOption
Adds the allowed file extensions.
addAnnotationPropertyAssociations(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Create an association for annotation properties that have an OWLNamedClass or OWLIndividual as their target.
addAnyObject(Object) - Method in class org.LexGrid.builtins.TsAnyType
 
addAnyObject(int, Object) - Method in class org.LexGrid.builtins.TsAnyType
 
addAnyObject(Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
addAnyObject(int, Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
addAnyProperties(List<Property>) - Method in class org.LexGrid.concepts.Entity
Adds all of the Properties (or subclasses of Property) in a given List to this Entity.
addAnyProperty(Property) - Method in class org.LexGrid.concepts.Entity
Adds any Property to this Entity.
addAssoc(AssociationEntity) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
addAssoc(int, AssociationEntity) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
addAssociatedConcept(AssociatedConcept) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
addAssociatedConcept(int, AssociatedConcept) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
addAssociatedConcept(AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
addAssociatedConcept(int, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
addAssociatedConceptToGraph(String, AssociatedConcept) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.CycleDetectingCallback
Adds the associated concept to graph.
addAssociatedConceptToGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.ReferenceReturningCycleDetectingCallback
 
addAssociatedConceptToGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
 
addAssociatedData(AssociatedData) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
addAssociatedData(int, AssociatedData) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
addAssociation(Relations, AssociationWrapper) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
addAssociation(OWLProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addAssociation(OWLAnnotation) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addAssociation(Relations, AssociationWrapper) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
addAssociation(RDFProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
addAssociation(Association) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
addAssociation(int, Association) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
addAssociation(String, String, String, String[], String, String, String, String, String, String, String[], String, NameAndValueList, boolean, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Add an edge to the graph.
addAssociationChildren(GNode, GAssociation, GNode, GAssociation) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Copy child nodes from the old parent/association to the new.
addAssociationEntity(AssociationEntity) - Method in class org.LexGrid.concepts.Entities
 
addAssociationEntity(int, AssociationEntity) - Method in class org.LexGrid.concepts.Entities
 
addAssociationInfo(String, String, String, String[], String, String, String, String, String, String, String[], String, NameAndValueList, boolean, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Add an edge to the graph.
addAssociationNames(String) - Method in class org.LexGrid.naming.SupportedHierarchy
 
addAssociationNames(int, String) - Method in class org.LexGrid.naming.SupportedHierarchy
 
addAssociationPredicate(AssociationPredicate) - Method in class org.LexGrid.relations.Relations
 
addAssociationPredicate(int, AssociationPredicate) - Method in class org.LexGrid.relations.Relations
 
addAssociationQualification(AssociationQualification) - Method in class org.LexGrid.relations.AssociatableElement
 
addAssociationQualification(int, AssociationQualification) - Method in class org.LexGrid.relations.AssociatableElement
 
addAssociations(TreeItem, AssociationList) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
addAssociationToAssociations(String, String, String, String, String, String, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addAssociationWhereClause(List<String>, DbTable) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Adds the association where clause.
addAssociationWhereClause(List<String>, DbTable) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Adds the association where clause.
addAssocSrc2Assoc(AssociationWrapper, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addAssocSrc2Assoc(AssociationWrapper, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
addBatch() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
addBatch(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
addBooleanOptionValue(String, Boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
addChangedEntry(ChangedEntry) - Method in class org.LexGrid.versions.Revision
 
addChangedEntry(int, ChangedEntry) - Method in class org.LexGrid.versions.Revision
 
addCheckBox(String, Composite, String, Boolean) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
addChild(String, LexEVSTreeItem) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
addChild(String, BuildTreeForCode.TreeItem) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
addChild(String, BuildTreeForMetaCodeBySource.TreeItem) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
addChild(String, FindUMLSContextsForCUI.TreeItem) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
addChild(GNode, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
addChildIterator(ChildTreeNodeIteratorFactory, LexEvsTreeNode, boolean) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Adds the child iterator.
addChildIterator(ChildTreeNodeIteratorFactory, LexEvsTreeNode, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Adds the child iterator.
addChildren(BuildTreeForCode.TreeItem, LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, Set<String>, String[], boolean) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Populate child nodes for a single branch of the tree, and indicates whether further expansion (to grandchildren) is possible.
addChildren(BuildTreeForMetaCodeBySource.TreeItem, String, CodingSchemeVersionOrTag, String, String, Set<String>, String[], boolean) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Populate child nodes for a single branch of the tree, and indicates whether further expansion (to grandchildren) is possible.
addCodedNodeReference(CodedNodeReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
addCodedNodeReference(int, CodedNodeReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
addCodingScheme(CodingScheme) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
addCodingScheme(int, CodingScheme) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
addCodingSchemeRendering(CodingSchemeRendering) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
addCodingSchemeRendering(int, CodingSchemeRendering) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
addCodingSchemeResourceFromSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Adds the coding scheme resource from system.
addCodingSchemeResourceToSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addCodingSchemeResourceToSystem(CodingScheme) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addCodingSchemeResourceToSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
addCodingSchemeResourceToSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addCodingSchemeResourceToSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Adds the coding scheme resource to system.
addCodingSchemeSummary(CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
addCodingSchemeSummary(int, CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
addComment(Comment) - Method in class org.LexGrid.concepts.Entity
 
addComment(int, Comment) - Method in class org.LexGrid.concepts.Entity
 
addConcept(HL7ConceptContainer) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptList
 
addConceptAssociationToConceptsHelper(String, String, String, String, String, String, String, String, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Add a code to code association.
addConceptReference(ConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
addConceptReference(int, ConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
addConcepts(ResolvedConceptReference[]) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
addConceptToConcepts(String, String, Boolean, Boolean, Boolean, Boolean, Boolean, Boolean, String, Boolean, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addConceptToConceptsMultiAttributes(String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addConceptToEntityPropertyMultiAttributes(String, String, String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addContentTab(TabbedContent) - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
addContentTab(TabbedContent) - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
addContentTab(TabbedContent) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
addContext(Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
addContext(int, Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
addDateField(String, Date, boolean) - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
addDateField(String, long, boolean, boolean) - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
addDefaultPickContext(String) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addDefaultPickContext(int, String) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addDefinition(Definition) - Method in class org.LexGrid.concepts.Entity
 
addDefinition(int, Definition) - Method in class org.LexGrid.concepts.Entity
 
addDefinitionEntry(DefinitionEntry) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
addDefinitionEntry(DefinitionEntry) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addDefinitionEntry(int, DefinitionEntry) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, AssociationData, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, AssociationTarget, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, CodingScheme, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, Entity, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.ParentUidReferencingId, String, Property, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
addDependentAttributesByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, Relations, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
addDependentAttributesByRevisionId(I, String, T, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Adds the dependent attributes by revision id.
addDocuments(String, String, List<Document>, Analyzer) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in interface org.lexevs.dao.index.access.metadata.MetadataDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
addDocuments(String, String, List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
addDocuments(List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
addDocuments(List<Document>, Analyzer) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
addDocuments(List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
addDocuments(List<Document>, Analyzer) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
addEdge(Node, Node, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.Graph
 
addEntity(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addEntity(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addEntity(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
addEntity(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
addEntity(String, String, String, String, String, String, String[], String, String, String, String, Boolean, Boolean, String, String, Boolean, String, String, String, Boolean, String, String[], String[], LuceneLoaderCode.Qualifier[]) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Adds the entity.
addEntity(Entity) - Method in class org.LexGrid.concepts.Entities
 
addEntity(int, Entity) - Method in class org.LexGrid.concepts.Entities
 
addEntityAssociationQualifierToEntityAssociation(String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addEntityAssociationToEntity(String, String, String, String, String, String, String, String, String, String, Boolean, Boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addEntityAttributes(String, String, String, T) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
addEntityIndexMetadata(AbsoluteCodingSchemeVersionReference, String, String) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Adds the index metadata.
addEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Add LuceneIndexes for the given list of concept.
addEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Add LuceneIndexes for the given list of concepts.
addEntityToIndex(String, String, Entity) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
addEntityToIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
addEntityToIndex(String, String, String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.AssertedValueSetSearchIndexService
Adds an entity to the index targeted by source coding scheme and defined further by the value set URI
addEntityToIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
addEntityToIndex(String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
addEntityToIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
addEntityToIndex(String, String, String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
addEntityToIndex(String, String, String, String, Entity) - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
addEntityToIndexTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
addEntityType(String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addEntityType(String) - Method in class org.LexGrid.concepts.Entity
 
addEntityType(int, String) - Method in class org.LexGrid.concepts.Entity
 
addEntityType(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
addEntityType(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
addEntityVersions(EntityVersion) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
addEntityVersions(int, EntityVersion) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
addEntry(CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
addEntry(int, CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
addEntry(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
addEntry(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
addEntry(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
addEntry(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
addEntry(NCIChangeEvent) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
addEntry(int, NCIChangeEvent) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
addEntry(SortOption) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
addEntry(int, SortOption) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
addEntry(CodingSchemeManifest) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
addEntry(int, CodingSchemeManifest) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
addEntryState(int, String, String, String, String, String, String, String, String, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addExtensionDescription(ExtensionDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
addExtensionDescription(int, ExtensionDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
addId(I) - Method in interface org.lexgrid.loader.data.property.IndividualIdSetter
Adds the id.
addId(Object) - Method in class org.lexgrid.loader.data.property.NoopIndividualIdSetter
 
addId(I) - Method in class org.lexgrid.loader.data.property.RandomGuidIndividualIdSetter
 
addId(Mrconso) - Method in class org.lexgrid.loader.meta.data.property.MetaMrconsoIndividualIdSetter
 
addId(Mrsat) - Method in class org.lexgrid.loader.meta.data.property.MetaMrsatIndividualIdSetter
 
addId(Mrsty) - Method in class org.lexgrid.loader.meta.data.property.MetaMrstyIndividualIdSetter
 
addId(Mrdef) - Method in class org.lexgrid.loader.rrf.data.property.MrdefAtuiIndividualIdSetter
 
addId(Mrconso) - Method in class org.lexgrid.loader.umls.data.property.MrconsoAuiIndividualIdSetter
 
addId(Mrdef) - Method in class org.lexgrid.loader.umls.data.property.MrdefIndividualIdSetter
 
addId(Mrsat) - Method in class org.lexgrid.loader.umls.data.property.MrsatIndividualIdSetter
 
addIds(List<I>) - Method in interface org.lexgrid.loader.data.property.ListIdSetter
Adds the ids.
addIds(List<I>) - Method in class org.lexgrid.loader.data.property.NoopListIdSetter
 
addIds(List<I>, String) - Method in interface org.lexgrid.loader.data.property.ParameterizedListIdSetter
Adds the ids.
addIds(List<ParentIdHolder<Property>>, String) - Method in class org.lexgrid.loader.data.property.ParameterizedSequentialIdSetter
 
addIds(List<Property>) - Method in class org.lexgrid.loader.data.property.PrefixedSequentialIdSetter
 
addIntField(String, int, int, boolean, boolean) - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
addInverseHierarchyAssociation(OWLObjectPropertyExpression) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addItemUpdateListener(ItemUpdateListener<T>) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
AdditiveCodeHolder - Interface in org.LexGrid.LexBIG.Impl.helpers
The Interface AdditiveCodeHolder.
addLeadingAndTrailingWildcards(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LeadingAndTrailingWildcardSearch
Adds the leading and trailing wildcards.
addLimitClause(String, int, int) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Adds the limit clause.
addLimitClause(String, int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Adds the limit clause.
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
addListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
addLocalName(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addLocalName(int, String) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addLocalName(CsmfLocalName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
addLocalName(int, CsmfLocalName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
addMember(ResourceEntity) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
addMember(ResourceEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
addMember(ResourceEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
addMember(ResourceEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
addMember(ResourceEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
addMember(ResourceEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
addMergeMember(OBORelation) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
addMetadataProperty(MetadataProperty) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
addMetadataProperty(int, MetadataProperty) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
addModuleDescription(ModuleDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
addModuleDescription(int, ModuleDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
addName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
addName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
addName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
addName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
addName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
addName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
addName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
addName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
addName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
addName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
addNameAndValue(NameAndValue) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
addNameAndValue(int, NameAndValue) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
addNciHistoryResourceToSystem(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addNciHistoryResourceToSystem(String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
addNciHistoryResourceToSystem(String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addNciHistoryResourceToSystem(String) - Method in interface org.lexevs.system.service.SystemResourceService
Adds the coding scheme resource to system.
addNewHistory(String, String, String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Add a new history item to the registry.
addNewItem(RegistryEntry) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
addNewItem(RegistryEntry) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
addNewItem(RegistryEntry) - Method in interface org.lexevs.registry.service.Registry
Adds the new item.
addNewItem(String, String, String, String, String, String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Adds the new item.
addNewItem(RegistryEntry) - Method in class org.lexevs.registry.service.XmlRegistry
 
addNode(ResolvedConceptReference, boolean) - Method in class org.LexGrid.LexBIG.gui.displayResults.Graph
 
addNode(String) - Method in class org.LexGrid.LexBIG.gui.displayResults.Graph
 
addNode(String, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.Graph
 
addNode(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Basic addition of a node to those tracked by the graph.
addNode(String, String, String, String[], String, String, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns a graph node based on the given information; a new node is added to the graph if necessary.
addNodeAddedListener(NodeAddedListener) - Method in class org.lexevs.tree.listener.NodeAddedListenerSupport
Deprecated.
Adds the node added listener.
addNodeAddedListener(NodeAddedListener) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListenerSupport
Adds the node added listener.
addNonCodingSchemeResourceToSystem(String, String, Registry.ResourceType) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addPathFromRoot(BuildTreeForCode.TreeItem, LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, Association, String[], boolean, Map<String, EntityDescription>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
The given path represents a multi-tier association with associated concepts and targets.
addPathToRootChildren(LexEvsTreeNode) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Adds the path to root children.
addPathToRootChildren(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Adds the path to root children.
addPathToRootParents(LexEvsTreeNode) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Adds the path to root parents.
addPathToRootParents(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Adds the path to root parents.
addPickContext(String) - Method in class org.LexGrid.valueSets.PickListEntry
 
addPickContext(int, String) - Method in class org.LexGrid.valueSets.PickListEntry
 
addPickListDefinition(PickListDefinition) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
addPickListDefinition(int, PickListDefinition) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
addPickListDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addPickListDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
addPickListDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addPickListDefinitionResourceToSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Adds the pick list resource to system.
addPickListEntryNode(PickListEntryNode) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addPickListEntryNode(int, PickListEntryNode) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addPresentation(Presentation) - Method in class org.LexGrid.concepts.Entity
 
addPresentation(int, Presentation) - Method in class org.LexGrid.concepts.Entity
 
addPropertiesToAssociationEntity(Entity, OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines an EMF concept and properties based on the given rdf source.
addProperty(Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
addProperty(Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
addProperty(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
addProperty(String, String, String, String, Entity, Property) - Method in class org.lexevs.dao.index.indexer.AssertedValueSetEntityIndexer
 
addProperty(String, String, List<String>, String, String) - Method in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
addProperty(Property) - Method in class org.LexGrid.commonTypes.Properties
 
addProperty(int, Property) - Method in class org.LexGrid.commonTypes.Properties
 
addProperty(Property) - Method in class org.LexGrid.concepts.Entity
 
addProperty(int, Property) - Method in class org.LexGrid.concepts.Entity
 
addPropertyLink(PropertyLink) - Method in class org.LexGrid.concepts.Entity
 
addPropertyLink(int, PropertyLink) - Method in class org.LexGrid.concepts.Entity
 
addPropertyQualifier(PropertyQualifier) - Method in class org.LexGrid.commonTypes.Property
 
addPropertyQualifier(int, PropertyQualifier) - Method in class org.LexGrid.commonTypes.Property
 
addPropertyQualifier(PropertyQualifier) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
addQualifiers(GNode, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
addRegistryListener(RegistryListener) - Method in class org.lexevs.registry.event.RegistryEventSupport
Adds the registry listener.
addRelations(Relations) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addRelations(int, Relations) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addRelationship(String, String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
addRelationToRelations(String, String, Boolean, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addRepresentsRealmOrContext(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addRepresentsRealmOrContext(int, String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addResolvedConceptReference(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
addResolvedConceptReference(int, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
addResolvedConceptReference(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
addResolvedConceptReference(int, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
addResolvedPickListEntry(ResolvedPickListEntry) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
addResolvedPickListEntry(int, ResolvedPickListEntry) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
addResolver(Resolver) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.AllFatalResolverProcessor
 
addResolver(Resolver) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.DefaultResolverProcessor
 
addResolver(Resolver) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.processor.ResolverProcessor
Adds the resolver.
addRestrictToContext(SortContext) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
addRestrictToContext(int, SortContext) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
addRevision(Revision) - Method in class org.LexGrid.versions.EditHistory
 
addRevision(int, Revision) - Method in class org.LexGrid.versions.EditHistory
 
addRootNodes(LexEvsTreeNode, LexEvsTreeNode) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Adds the root nodes.
addRootNodes(LexEvsTreeNode, LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Adds the root nodes.
addRootRelationNode(String, String, List<String>, String, LexEvsDatabaseOperations.RootOrTail, LexEvsDatabaseOperations.TraverseAssociations) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
addRootRelationNode(String, String, List<String>, String, LexEvsDatabaseOperations.RootOrTail, LexEvsDatabaseOperations.TraverseAssociations) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
addRootRelationNode(String, String, List<String>, String, LexEvsDatabaseOperations.RootOrTail, LexEvsDatabaseOperations.TraverseAssociations) - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
addRootRelationNode(String, String, List<String>, String, LexEvsDatabaseOperations.RootOrTail, LexEvsDatabaseOperations.TraverseAssociations) - Method in interface org.lexevs.dao.database.operation.root.RootBuilder
 
addRootRelationNode(String, String[], String, boolean) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Add the root or tail relationship node for an association name in a coding scheme.
addRootRelationNode(String, String[], String[], String, boolean) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Add the root or tail relationship node for an association name in a coding scheme.
addSelectionListener(SelectionListener) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
addSortDescription(SortDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
addSortDescription(int, SortDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
addSortOption(SortOption) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Adds the sort option.
addSource(Source) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addSource(int, Source) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
addSource(Source) - Method in class org.LexGrid.commonTypes.Property
 
addSource(int, Source) - Method in class org.LexGrid.commonTypes.Property
 
addSource(CsmfSource) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
addSource(int, CsmfSource) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
addSource(AssociationSource) - Method in class org.LexGrid.relations.AssociationPredicate
 
addSource(int, AssociationSource) - Method in class org.LexGrid.relations.AssociationPredicate
 
addSource(Source) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addSource(int, Source) - Method in class org.LexGrid.valueSets.PickListDefinition
 
addSource(Source) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addSource(int, Source) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
addSupportedAssociation(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedAssociation(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported association.
addSupportedAssociation(SupportedAssociation) - Method in class org.LexGrid.naming.Mappings
 
addSupportedAssociation(int, SupportedAssociation) - Method in class org.LexGrid.naming.Mappings
 
addSupportedAssociationQualifier(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedAssociationQualifier(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported association qualifier.
addSupportedAssociationQualifier(SupportedAssociationQualifier) - Method in class org.LexGrid.naming.Mappings
 
addSupportedAssociationQualifier(int, SupportedAssociationQualifier) - Method in class org.LexGrid.naming.Mappings
 
addSupportedAssociations(String, String, DaoCallbackService) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Adds the supported associations.
addSupportedCodingScheme(String, String, String, String, String, boolean) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedCodingScheme(String, String, String, String, String, boolean) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported coding scheme.
addSupportedCodingScheme(SupportedCodingScheme) - Method in class org.LexGrid.naming.Mappings
 
addSupportedCodingScheme(int, SupportedCodingScheme) - Method in class org.LexGrid.naming.Mappings
 
addSupportedConceptDomain(SupportedConceptDomain) - Method in class org.LexGrid.naming.Mappings
 
addSupportedConceptDomain(int, SupportedConceptDomain) - Method in class org.LexGrid.naming.Mappings
 
addSupportedContainerName(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedContainerName(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported container name.
addSupportedContainerName(SupportedContainerName) - Method in class org.LexGrid.naming.Mappings
 
addSupportedContainerName(int, SupportedContainerName) - Method in class org.LexGrid.naming.Mappings
 
addSupportedContext(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedContext(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported context.
addSupportedContext(SupportedContext) - Method in class org.LexGrid.naming.Mappings
 
addSupportedContext(int, SupportedContext) - Method in class org.LexGrid.naming.Mappings
 
addSupportedDataType(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedDataType(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported data type.
addSupportedDataType(SupportedDataType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedDataType(int, SupportedDataType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedDegreeOfFidelity(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedDegreeOfFidelity(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported degree of fidelity.
addSupportedDegreeOfFidelity(SupportedDegreeOfFidelity) - Method in class org.LexGrid.naming.Mappings
 
addSupportedDegreeOfFidelity(int, SupportedDegreeOfFidelity) - Method in class org.LexGrid.naming.Mappings
 
addSupportedElement(SupportedElement) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
addSupportedElement(int, SupportedElement) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
addSupportedEntityType(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedEntityType(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported entity type.
addSupportedEntityType(SupportedEntityType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedEntityType(int, SupportedEntityType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedEntityTypes(String, String, DaoCallbackService) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Adds the supported entity types.
addSupportedFormats(String, String, DaoCallbackService) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Adds the supported formats.
addSupportedHierarchy(String, String, String, String, List<String>, boolean, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedHierarchy(String, String, String, String, List<String>, boolean, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported hierarchy.
addSupportedHierarchy(SupportedHierarchy) - Method in class org.LexGrid.naming.Mappings
 
addSupportedHierarchy(int, SupportedHierarchy) - Method in class org.LexGrid.naming.Mappings
 
addSupportedLanguage(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedLanguage(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported language.
addSupportedLanguage(SupportedLanguage) - Method in class org.LexGrid.naming.Mappings
 
addSupportedLanguage(int, SupportedLanguage) - Method in class org.LexGrid.naming.Mappings
 
addSupportedLanguages(String, String, DaoCallbackService) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Adds the supported languages.
addSupportedNamespace(String, String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedNamespace(String, String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported namespace.
addSupportedNamespace(SupportedNamespace) - Method in class org.LexGrid.naming.Mappings
 
addSupportedNamespace(int, SupportedNamespace) - Method in class org.LexGrid.naming.Mappings
 
addSupportedProperties(String, String, DaoCallbackService) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Adds the supported properties.
addSupportedProperty(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedProperty(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported property.
addSupportedProperty(SupportedProperty) - Method in class org.LexGrid.naming.Mappings
 
addSupportedProperty(int, SupportedProperty) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyLink(SupportedPropertyLink) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyLink(int, SupportedPropertyLink) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyQualifier(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedPropertyQualifier(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported property qualifier.
addSupportedPropertyQualifier(SupportedPropertyQualifier) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyQualifier(int, SupportedPropertyQualifier) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyQualifierType(SupportedPropertyQualifierType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyQualifierType(int, SupportedPropertyQualifierType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyType(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedPropertyType(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported property type.
addSupportedPropertyType(SupportedPropertyType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedPropertyType(int, SupportedPropertyType) - Method in class org.LexGrid.naming.Mappings
 
addSupportedRepresentationalForm(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedRepresentationalForm(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported representational form.
addSupportedRepresentationalForm(SupportedRepresentationalForm) - Method in class org.LexGrid.naming.Mappings
 
addSupportedRepresentationalForm(int, SupportedRepresentationalForm) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSortOrder(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedSortOrder(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported sort order.
addSupportedSortOrder(SupportedSortOrder) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSortOrder(int, SupportedSortOrder) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSource(String, String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedSource(String, String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported source.
addSupportedSource(SupportedSource) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSource(int, SupportedSource) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSourceRole(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedSourceRole(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported source role.
addSupportedSourceRole(SupportedSourceRole) - Method in class org.LexGrid.naming.Mappings
 
addSupportedSourceRole(int, SupportedSourceRole) - Method in class org.LexGrid.naming.Mappings
 
addSupportedStatus(String, String, String, String, String) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
addSupportedStatus(String, String, String, String, String) - Method in interface org.lexgrid.loader.dao.template.SupportedAttributeTemplate
Adds the supported status.
addSupportedStatus(SupportedStatus) - Method in class org.LexGrid.naming.Mappings
 
addSupportedStatus(int, SupportedStatus) - Method in class org.LexGrid.naming.Mappings
 
addSystemEventListeners(SystemEventListener) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addSystemEventListeners(SystemEventListener) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
addSystemEventListeners(SystemEventListener) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addSystemEventListeners(SystemEventListener) - Method in interface org.lexevs.system.service.SystemResourceService
 
addSystemRelease(SystemRelease) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
addSystemRelease(int, SystemRelease) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
addTag(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
addTag(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
addTarget(AssociationTarget) - Method in class org.LexGrid.relations.AssociationSource
 
addTarget(int, AssociationTarget) - Method in class org.LexGrid.relations.AssociationSource
 
addTargetConcept(Concept) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
addTargetData(AssociationData) - Method in class org.LexGrid.relations.AssociationSource
 
addTargetData(int, AssociationData) - Method in class org.LexGrid.relations.AssociationSource
 
addTargetToExistingSource(MrMap, AssociationPredicate, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
AddTargetToExistingSourceTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
AddTargetToExistingSourceTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.AddTargetToExistingSourceTest
 
addTextBox(String, Composite, String, String) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
addTextField(String, String, boolean, boolean, boolean) - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
addToCodingScheme(String, String, String, String, String, int, Boolean, int, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addToEntityProperty(String, String, String, String, String, String, String, String, Boolean, String, Boolean, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
addToEnvironment(String, Object) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
addToSupportedPropertyAndMap(String, String, OWLNamedObject) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
addToSupportedPropertyAndMap(String, String, RDFProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
addTrailingWildcard(String[]) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Adds the trailing wildcard.
addTrailingWildcardToAllTokens(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Adds the trailing wildcard to all tokens.
addTreeItem(Tree, Object, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
addTreeItem(TreeItem, Object, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
addUsageContext(String) - Method in class org.LexGrid.commonTypes.Property
 
addUsageContext(int, String) - Method in class org.LexGrid.commonTypes.Property
 
addUsageContext(String) - Method in class org.LexGrid.relations.AssociatableElement
 
addUsageContext(int, String) - Method in class org.LexGrid.relations.AssociatableElement
 
AddUTF8PropToDBConnectionProperties(Properties, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
addValidator(Validator) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.ReflectionValidationProcessor
 
addValidator(Validator) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.processor.ValidationProcessor
Adds the validator.
addValueSetDefinition(ValueSetDefinition) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
addValueSetDefinition(int, ValueSetDefinition) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
addValueSetDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
addValueSetDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
addValueSetDefinitionResourceToSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
addValueSetDefinitionResourceToSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Adds the value set definition resource to system.
addVSDProperty(Property) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
adjustArtificialRootResolvePolicy(boolean, boolean, PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy, GraphQuery) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl
 
adjustEndPos(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
adjustForCommonAndTableSetPrefixes(String, String, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
Adjust for prefix.
adjustForPrefix(String, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
adjustLength(char[]) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Adjust length.
adjustNonNullValue(String) - Static method in class org.lexgrid.loader.data.DataUtils
 
afterJob(JobExecution) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
afterJob(JobExecution) - Method in class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
 
afterJob(JobExecution) - Method in class org.lexgrid.loader.listener.CleanupListener
 
afterJob(JobExecution) - Method in class org.lexgrid.loader.listener.SetupListener
 
afterProcessing(List<O>) - Method in class org.lexgrid.loader.processor.AbstractListProcessor
After processing.
afterProcessing(List<O>, List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
After processing.
afterProcessing(List<O>, List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
After processing.
afterProcessing(List<ParentIdHolder<Property>>, List<I>) - Method in class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
afterProcessing(List<O>) - Method in class org.lexgrid.loader.processor.PreFilteringListProcessor
 
afterProcessing(List<O>, List<I>) - Method in class org.lexgrid.loader.processor.SortingListProcessor
 
afterProcessing(List<ParentIdHolder<Property>>, List<Mrsty>) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
afterPropertiesSet() - Method in class org.lexevs.cache.CacheRegistry
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
 
afterPropertiesSet() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
afterPropertiesSet() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
afterPropertiesSet() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
afterPropertiesSet() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
 
afterPropertiesSet() - Method in class org.lexevs.system.constants.SystemVariablesFactory
 
afterPropertiesSet() - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
afterPropertiesSet() - Method in class org.lexgrid.loader.logging.LgMessageDirectorIFFactory
 
afterPropertiesSet() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
afterPropertiesSet() - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
afterPropertiesSet() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
afterPropertiesSet() - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
 
afterPropertiesSet() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
afterPropertiesSet() - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
 
afterPropertiesSet() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
 
afterPropertiesSet() - Method in class org.lexgrid.loader.reader.ListReader
 
afterPropertiesSet() - Method in class org.lexgrid.loader.rrf.factory.MrsatUsageFactory
 
afterPropertiesSet() - Method in class org.lexgrid.loader.rrf.processor.AbstractMrhierProcessor
 
afterPropertiesSet() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
afterPropertiesSet() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
afterPropertiesSet() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
afterPropertiesSet() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
afterStep(StepExecution) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
afterStep(StepExecution) - Method in class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
 
afterStep(StepExecution) - Method in class org.lexgrid.loader.listener.StepCompletionListener
 
ALL_IN_MEMORY_SYSTEM_VARIABLE - Static variable in class org.lexevs.system.constants.SystemVariables
 
AllFatalResolverProcessor - Class in edu.mayo.informatics.lexgrid.convert.validator.processor
 
AllFatalResolverProcessor() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.processor.AllFatalResolverProcessor
 
allMedDRAfilesExist(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAFormatValidator
 
allMedDRAfilesNotEmpty(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAFormatValidator
 
AllSourceAssertedUpdateTests - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
AllSourceAssertedUpdateTests() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AllSourceAssertedUpdateTests
 
ALPHABET - Static variable in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
The ALPHABET.
alternateDescriptions - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
altIds - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
altLabel - Static variable in class org.lexgrid.exporter.owlrdf.Skos
 
analyzer_ - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The analyzer_.
Anonymous - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the RestrictToStatus restrictions.
Anonymous() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.Anonymous
 
ANONYMOUS_TEXTPRESENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
anonymousOption - Variable in class org.LexGrid.LexBIG.gui.restrictions.Anonymous
 
append(LoggingEvent) - Method in class org.lexevs.logging.SimpleEmailAppender
 
append(StringBuffer, String, AbsoluteCodingSchemeVersionReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociatedConceptList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociatedDataList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeRenderingList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeTagList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeVersionList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodedNodeReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ExtensionDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, LocalNameList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, MetadataPropertyList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ModuleDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, NameAndValueList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, NCIChangeEventList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ResolvedConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SortDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SortOptionList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedElementList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SystemReleaseList) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AbsoluteCodingSchemeVersionReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociatedConcept) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociatedData) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Association) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodedNodeReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeSummary) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, LogEntry) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, MetadataProperty) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, NameAndValue) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ReferenceLink) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ResolvedCodedNodeReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedElement) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeRendering) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ExportStatus) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ExtensionDescription) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, LoadStatus) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ModuleDescription) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ProcessStatus) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, RenderingDetail) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SortDescription) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SortOption) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SystemReleaseDetail) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, NCIChangeEvent) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingScheme) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemes) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Describable) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, EntityDescription) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Properties) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Property) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PropertyQualifier) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Source) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Text) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Versionable) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, VersionableAndDescribable) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Definition) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Entity) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Entities) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Presentation) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PropertyLink) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Mappings) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedAssociation) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedCodingScheme) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedHierarchy) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedNamespace) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedProperty) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SupportedSource) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, URIMap) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationEntity) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociatableElement) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationData) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationQualification) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationSource) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AssociationTarget) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Relations) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ChangedEntry) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, EditHistory) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, EntityVersion) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, EntryState) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Revision) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, SystemRelease) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, CodingSchemeReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, DefinitionEntry) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, EntityReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListDefinition) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListEntry) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListEntryExclusion) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListEntryNode) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListEntryNodeChoice) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, PickListDefinitions) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ValueSetDefinition) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ValueSetDefinitionReference) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, ValueSetDefinitions) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, String) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, Boolean) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, boolean) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
append(StringBuffer, String, AbsoluteCodingSchemeVersionReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociatedConceptList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociatedDataList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeRenderingList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeTagList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeVersionList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodedNodeReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ExtensionDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, LocalNameList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, MetadataPropertyList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ModuleDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, NameAndValueList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, NCIChangeEventList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ResolvedConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SortDescriptionList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SortOptionList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedElementList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SystemReleaseList) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AbsoluteCodingSchemeVersionReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociatedConcept) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociatedData) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Association) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodedNodeReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeSummary) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, LogEntry) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, MetadataProperty) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, NameAndValue) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ReferenceLink) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ResolvedCodedNodeReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedElement) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeRendering) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ExportStatus) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ExtensionDescription) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, LoadStatus) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ModuleDescription) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ProcessStatus) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, RenderingDetail) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SortDescription) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SortOption) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SystemReleaseDetail) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, NCIChangeEvent) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingScheme) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemes) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Describable) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, EntityDescription) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Properties) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Property) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PropertyQualifier) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Source) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Text) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Versionable) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, VersionableAndDescribable) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Definition) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Entity) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Entities) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Presentation) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PropertyLink) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Mappings) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedCodingScheme) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedHierarchy) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedNamespace) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SupportedSource) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, URIMap) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationEntity) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociatableElement) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationData) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationQualification) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationSource) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, AssociationTarget) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Relations) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ChangedEntry) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, EditHistory) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, EntityVersion) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, EntryState) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Revision) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, SystemRelease) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, CodingSchemeReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, DefinitionEntry) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, EntityReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListDefinition) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListEntry) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListEntryExclusion) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListEntryNode) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListEntryNodeChoice) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, PickListDefinitions) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ValueSetDefinition) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ValueSetDefinitionReference) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, ValueSetDefinitions) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, String) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, Boolean) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
append(StringBuffer, String, boolean) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
appendAndWrap(StringBuffer, String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Appends the given text to the buffer, breaking at word and line boundaries as dictated by whitespace and a maximum length.
appendAndWrap(StringBuffer, String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Appends the given text to the buffer, breaking at word and line boundaries as dictated by whitespace and a maximum length.
applicationContext - Variable in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
applicationContext - Variable in class org.lexevs.dao.indexer.utility.LuceneMultiIndexMetaDataFactoryTest
 
ApplicationContextFactory - Class in org.lexevs.tree.service
Deprecated.
ApplicationContextFactory() - Constructor for class org.lexevs.tree.service.ApplicationContextFactory
Deprecated.
Instantiates a new application context factory.
ApplicationContextFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.service
A factory for creating ApplicationContext objects.
ApplicationContextFactory() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.service.ApplicationContextFactory
Instantiates a new application context factory.
applyManifest(CodingSchemeManifest, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
applyManifest(CodingSchemeManifest, URNVersionPair) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
Applies the given manifest to an existing coding scheme definition in a SQL-based repository.
applyToCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Apply all registered values to the given coding scheme.
ApproxNumOfConceptsPostProcessor - Class in org.LexGrid.LexBIG.Impl.loaders.postprocessor
The Class ApproxNumOfConceptsPostProcessor.
ApproxNumOfConceptsPostProcessor() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.postprocessor.ApproxNumOfConceptsPostProcessor
 
APROX_ASSOC_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
areCodedNodeReferencesEquals(CodedNodeReference, CodedNodeReference) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
Are coded node references equals.
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean, ArrayList<Operation>, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
areCodesRelated(NameAndValue, ConceptReference, ConceptReference, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Determine whether there is an directed edge (or transitive closure of an edge) from the source code to the target code in this graph.
ARRAY - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
ASCENDING - Static variable in class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
ASSERTED_VALUE_SET_SCHEME - Static variable in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
ASSERTED_VALUESET_RELATION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
ASSERTED_VALUESET_RELATION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
assertedDefaultHierarchyVSRelation(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
assertedRelation - Variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
AssertedValueSetEntityIndexer - Class in org.lexevs.dao.index.indexer
 
AssertedValueSetEntityIndexer() - Constructor for class org.lexevs.dao.index.indexer.AssertedValueSetEntityIndexer
 
AssertedValueSetEntityResolver - Class in org.lexgrid.valuesets.sourceasserted.impl
 
AssertedValueSetEntityResolver(AssertedValueSetParameters, String) - Constructor for class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetEntityResolver
 
AssertedValueSetIndexCreation - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
AssertedValueSetIndexCreation() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexCreation
 
AssertedValueSetIndexLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
AssertedValueSetIndexLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.AssertedValueSetIndexLoaderImpl
 
AssertedValueSetIndexLocationFactory - Class in org.lexevs.dao.index.factory
 
AssertedValueSetIndexLocationFactory() - Constructor for class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
AssertedValueSetIndexSupport - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
AssertedValueSetIndexSupport() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexSupport
 
AssertedValueSetParameters - Class in org.LexGrid.util.assertedvaluesets
 
AssertedValueSetParameters.Builder - Class in org.LexGrid.util.assertedvaluesets
 
assertedValueSetRelation(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
AssertedValueSetResolvedConceptReferenceIterator - Class in org.lexgrid.valuesets.sourceasserted.impl
 
AssertedValueSetResolvedConceptReferenceIterator() - Constructor for class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
AssertedValueSetResolvedConceptReferenceIterator(String, AssertedValueSetParameters) - Constructor for class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
AssertedValueSetSearchIndexService - Interface in org.lexevs.dao.index.service.search
 
AssertedValueSetService - Interface in org.lexevs.dao.database.service.valuesets
 
AssertedValueSetServiceImpl - Class in org.lexevs.dao.database.service.valuesets
 
AssertedValueSetServiceImpl() - Constructor for class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
AssertedValueSetServices - Class in org.LexGrid.util.assertedvaluesets
 
AssertedValueSetServices() - Constructor for class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
AssertedValueSetServices.BaseName - Enum in org.LexGrid.util.assertedvaluesets
 
AssertedValueSetServicesTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
AssertedValueSetServicesTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
AssertedValueSetTagTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
AssertedValueSetTagTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetTagTest
 
ASSOC_ALLDIFFERENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_ALLDIFFERENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_ALLDIFFERENT_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_ALLDIFFERENT_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_COMPLEMENTOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_COMPLEMENTOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_COMPLEMENTOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_COMPLEMENTOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DATATYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DATATYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DATATYPE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DATATYPE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DATATYPEVALUE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DATATYPEVALUE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DATATYPEVALUE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DATATYPEVALUE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DIFFERENTFROM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DIFFERENTFROM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DIFFERENTFROM_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DIFFERENTFROM_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DIR_ASSERTED_FALSE - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
ASSOC_DIR_ASSERTED_TRUE - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
ASSOC_DISJOINTUNION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DISJOINTUNION_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DISJOINTWITH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DISJOINTWITH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DISJOINTWITH_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DISJOINTWITH_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DOMAIN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DOMAIN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DOMAIN_FWD - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DOMAIN_FWD - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_DOMAIN_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_DOMAIN_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_EQUIVALENTCLASS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_EQUIVALENTCLASS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_EQUIVALENTCLASS_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_EQUIVALENTCLASS_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_EQUIVALENTPROPERTY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_EQUIVALENTPROPERTY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_EQUIVALENTPROPERTY_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_EQUIVALENTPROPERTY_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_INVERSEOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_INVERSEOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_INVERSEOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_INVERSEOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
ASSOC_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
ASSOC_RANGE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_RANGE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_RANGE_FWD - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_RANGE_FWD - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_RANGE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_RANGE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SAMEAS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SAMEAS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SAMEAS_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SAMEAS_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SUBCLASSOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SUBCLASSOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SUBCLASSOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SUBCLASSOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SUBPROPERTYOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SUBPROPERTYOF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_SUBPROPERTYOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_SUBPROPERTYOF_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ASSOC_TYPE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ASSOC_TYPE_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
AssociatableElement - Class in org.LexGrid.relations
Information common to both the entity and data form of the "to" (or right hand) side of an association.
AssociatableElement() - Constructor for class org.LexGrid.relations.AssociatableElement
 
AssociatableElementDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociatableElementDescriptor.
AssociatableElementDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
 
AssociatedConcept - Class in org.LexGrid.LexBIG.DataModel.Core
A concept reference that is the source or target of an association.
AssociatedConcept() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
 
AssociatedConceptDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class AssociatedConceptDescriptor.
AssociatedConceptDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
 
AssociatedConceptIterator - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging
The Class AssociatedConceptIterator.
AssociatedConceptIterator() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
AssociatedConceptIterator(String, String, String, String, String, String, boolean, boolean, int, int, int, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback, AssociationListBuilder.AssociationDirection, int) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
Instantiates a new associated concept iterator.
AssociatedConceptKey(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Instantiates a new associated concept key.
AssociatedConceptList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class AssociatedConceptList.
AssociatedConceptList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
AssociatedConceptListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class AssociatedConceptListDescriptor.
AssociatedConceptListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
 
AssociatedData - Class in org.LexGrid.LexBIG.DataModel.Core
A "dataProperty" - data that is the target of an association.
AssociatedData() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
AssociatedDataDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class AssociatedDataDescriptor.
AssociatedDataDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
 
AssociatedDataList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class AssociatedDataList.
AssociatedDataList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
AssociatedDataListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class AssociatedDataListDescriptor.
AssociatedDataListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
 
Association - Class in edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
Holder for association loaded from Text files.
Association() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
Association() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
Association - Class in org.LexGrid.LexBIG.DataModel.Core
The representation of a particular association as it appears in a CodedNode
Association() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.Association
 
Association - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the Association restrictions.
Association() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.Association
 
ASSOCIATION - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ASSOCIATION_BROADER - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
ASSOCIATION_DERIVES_FROM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_DEVELOPS_FROM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_DEVELOPS_FROM_ISFORWARDNAVIGABLE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_DEVELOPS_TO - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_DISJOINT_FROM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_HAS_PART - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_HAS_SUBTYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
ASSOCIATION_HAS_SUBTYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
ASSOCIATION_HAS_SUBTYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
ASSOCIATION_HASSUBTYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
ASSOCIATION_HASSUBTYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_HASSUBTYPE_FORWARDNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_INSTANCE_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_INTERSECTION_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_INVERSE_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_IS_A - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
ASSOCIATION_IS_A - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
ASSOCIATION_IS_A - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
ASSOCIATION_ISA - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
ASSOCIATION_ISA - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_ISA_ISFORWARDNAVIGABLE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
ASSOCIATION_ISA_ISFORWARDNAVIGABLE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_LOCATED_IN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
ASSOCIATION_NAME - Static variable in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
ASSOCIATION_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
ASSOCIATION_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
ASSOCIATION_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetHierarchyDao
 
ASSOCIATION_OBO_REL_PART_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_PART_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_PART_OF_ISFORWARDNAVIGABLE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
ASSOCIATION_SOURCE_BATCH_INSERT_ERROR_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
The ASSOCIATIO n_ sourc e_ batc h_ inser t_ erro r_ code.
ASSOCIATION_UNION_OF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
AssociationBatchInsertEvent - Class in org.lexevs.dao.database.service.event.association
The Class AssociationBatchInsertEvent.
AssociationBatchInsertEvent(String, String, Relations, List<? extends AssociationSource>) - Constructor for class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Instantiates a new association batch insert event.
AssociationDao - Interface in org.lexevs.dao.database.access.association
The Interface AssociationDao.
AssociationData - Class in org.LexGrid.relations
An instance of a target or RHS data value of an association.
AssociationData() - Constructor for class org.LexGrid.relations.AssociationData
 
AssociationDataDao - Interface in org.lexevs.dao.database.access.association
 
AssociationDataDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationDataDescriptor.
AssociationDataDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationDataDescriptor
 
AssociationDataService - Interface in org.lexevs.dao.database.service.association
The Interface AssociationDataService.
AssociationDef - Class in org.lexgrid.lexevs.ndfrt.data
 
AssociationDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.AssociationDef
 
AssociationDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class AssociationDescriptor.
AssociationDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
 
AssociationEntity - Class in org.LexGrid.relations
A binary relation from a set of entities to a set of entities and/or data.
AssociationEntity() - Constructor for class org.LexGrid.relations.AssociationEntity
 
AssociationEntityCache - Interface in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces
 
AssociationEntityCacheEhcacheImpl - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl
 
AssociationEntityCacheEhcacheImpl() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
AssociationEntityCacheFactory - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util
 
AssociationEntityCacheFactory() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.AssociationEntityCacheFactory
 
AssociationEntityCacheInMemoryImpl - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl
 
AssociationEntityCacheInMemoryImpl() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
AssociationEntityDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationEntityDescriptor.
AssociationEntityDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
 
AssociationInstanceIdResolver<T> - Interface in org.lexgrid.loader.data.association
The Interface AssociationInstanceIdResolver.
AssociationInstanceKeyResolver - Interface in org.lexgrid.loader.database.key
 
associationInstancePage - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
The association instance page.
AssociationList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class AssociationList.
AssociationList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
AssociationListBuilder - Class in org.LexGrid.LexBIG.Impl.pagedgraph.builder
The Class AssociationListBuilder.
AssociationListBuilder() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
 
AssociationListBuilder.AssociationDirection - Enum in org.LexGrid.LexBIG.Impl.pagedgraph.builder
The Enum AssociationDirection.
AssociationListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class AssociationListDescriptor.
AssociationListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
 
AssociationListToTreeNodeList - Class in org.lexevs.tree.transform
Deprecated.
AssociationListToTreeNodeList() - Constructor for class org.lexevs.tree.transform.AssociationListToTreeNodeList
Deprecated.
 
AssociationListToTreeNodeList - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.transform
The Class AssociationListToTreeNodeList.
AssociationListToTreeNodeList() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.transform.AssociationListToTreeNodeList
 
AssociationManager - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
AssociationManager(SupportedMappings, Relations, Relations) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
AssociationManager - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
 
AssociationManager(SupportedMappings, Relations, Relations) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
associationNameOrId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
AssociationPredicate - Class in org.LexGrid.relations
The local identifier of the relation itself. associationName must match a local id of a supportedAssociationName in the corresponding mappings section.
AssociationPredicate() - Constructor for class org.LexGrid.relations.AssociationPredicate
 
AssociationPredicateCreatingKeyResolver - Class in org.lexgrid.loader.database.key
 
AssociationPredicateCreatingKeyResolver() - Constructor for class org.lexgrid.loader.database.key.AssociationPredicateCreatingKeyResolver
 
AssociationPredicateDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationPredicateDescriptor.
AssociationPredicateDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
 
associationPredicateExists(String, Relations[]) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
AssociationPredicateKeyResolver - Interface in org.lexgrid.loader.database.key
 
AssociationQualification() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
associationQualification - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
AssociationQualification - Class in org.LexGrid.relations
A modifier that further qualifies the particular association instance.
AssociationQualification() - Constructor for class org.LexGrid.relations.AssociationQualification
 
AssociationQualificationDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationQualificationDescriptor.
AssociationQualificationDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
 
AssociationQualifierBatchInsertItem - Class in org.lexevs.dao.database.access.association.batch
The Class AssociationqualifierBatchInsertItem.
AssociationQualifierBatchInsertItem() - Constructor for class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Instantiates a new association qualifier batch insert item.
AssociationQualifierBatchInsertItem(String, AssociationQualification) - Constructor for class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Instantiates a new association qualifier batch insert item.
associationQualifierRUI_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
associationQualifiers - Variable in class org.LexGrid.LexBIG.gui.restrictions.Association
 
associationQualifiers - Variable in class org.LexGrid.LexBIG.gui.restrictions.DirectionalName
 
associationQualifierValue - Variable in class org.LexGrid.LexBIG.gui.restrictions.Association
 
associationQualifierValue - Variable in class org.LexGrid.LexBIG.gui.restrictions.DirectionalName
 
AssociationQualifierWriter - Class in org.lexgrid.loader.writer
 
AssociationQualifierWriter() - Constructor for class org.lexgrid.loader.writer.AssociationQualifierWriter
 
AssociationResolver<I> - Interface in org.lexgrid.loader.processor.support
The Interface AssociationResolver.
associations - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
associations - Variable in class org.LexGrid.LexBIG.gui.restrictions.Association
 
associations - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
ASSOCIATIONS - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
AssociationService - Interface in org.lexevs.dao.database.service.association
The Interface AssociationService.
AssociationService.AssociationTriple - Class in org.lexevs.dao.database.service.association
The Class AssociationTriple.
AssociationSorter() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationSorter
Deprecated.
 
AssociationSource - Class in org.LexGrid.relations
An entity that occurs in one or more instances of a relation on the "from" (or left hand) side of a particular relation.
AssociationSource() - Constructor for class org.LexGrid.relations.AssociationSource
 
AssociationSourceBatchInsertError - Class in edu.mayo.informatics.lexgrid.convert.inserter.error
The Class AssociationSourceBatchInsertError.
AssociationSourceBatchInsertError(AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
Instantiates a new association source batch insert error.
AssociationSourceBatchInsertError(Object, Exception) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
 
AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem - Class in edu.mayo.informatics.lexgrid.convert.inserter.error
The Class AssociationSourceInsertErrorItem.
AssociationSourceBatchInsertErrorItem(String, List<AssociationSourceBatchInsertItem>) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
Instantiates a new association source insert error item.
AssociationSourceBatchInsertItem - Class in org.lexevs.dao.database.access.association.batch
The Class AssociationSourceBatchInsertItem.
AssociationSourceBatchInsertItem() - Constructor for class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Instantiates a new association source batch insert item.
AssociationSourceBatchInsertItem(String, AssociationSource) - Constructor for class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Instantiates a new association source batch insert item.
AssociationSourceCache - Interface in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces
 
AssociationSourceCacheEhcacheImpl - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl
 
AssociationSourceCacheEhcacheImpl() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
AssociationSourceCacheFactory - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util
 
AssociationSourceCacheFactory() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.AssociationSourceCacheFactory
 
AssociationSourceCacheNoopImpl - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl
 
AssociationSourceCacheNoopImpl() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
AssociationSourceDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationSourceDescriptor.
AssociationSourceDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
 
AssociationSourceWriter - Class in org.lexgrid.loader.writer
 
AssociationSourceWriter() - Constructor for class org.lexgrid.loader.writer.AssociationSourceWriter
 
AssociationTarget - Class in org.LexGrid.relations
An entity on the "to" (or right hand) side of a relation.
AssociationTarget() - Constructor for class org.LexGrid.relations.AssociationTarget
 
AssociationTargetDao - Interface in org.lexevs.dao.database.access.association
 
AssociationTargetDescriptor - Class in org.LexGrid.relations.descriptors
Class AssociationTargetDescriptor.
AssociationTargetDescriptor() - Constructor for class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
 
AssociationTargetService - Interface in org.lexevs.dao.database.service.association
The Interface AssociationTargetService.
AssociationTriple(AssociationSource, String, String) - Constructor for class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Instantiates a new association triple.
AssociationWrapper - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
Association class in lg model is spit to AssociationPredicate and AssociationEntity.
AssociationWrapper() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
AssociationWrapper - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
Association class in lg model is spit to AssociationPredicate and AssociationEntity.
AssociationWrapper() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
assocToChildMap - Variable in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
assocToChildMap - Variable in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
assocToChildMap - Variable in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
ASYNC_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
ASYNC_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
ASYNC_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
ASYNC_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
ASYNC_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
aTest() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest.Test
 
atn - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
atn - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
attributesProcessed(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
attributesProcessed(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
attributesProcessed(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
attributesProcessed(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
attributesProcessed(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
atui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
ATUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
atv - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
atv - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
AUI - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
AUI_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
AUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The AU i_ qualifier.
AuiBasedRelationResolver - Class in org.lexgrid.loader.umls.processor.support
The Class AuiBasedRelationResolver.
AuiBasedRelationResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.AuiBasedRelationResolver
 
AuiResolver<I> - Interface in org.lexgrid.loader.rrf.processor.support
 
auis - Variable in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
auiToCodeCache_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
AuiToCuiProcessor - Class in org.lexgrid.loader.meta.staging.processor
The Class AuiToCuiProcessor.
AuiToCuiProcessor() - Constructor for class org.lexgrid.loader.meta.staging.processor.AuiToCuiProcessor
 
AuthoringService - Interface in org.lexevs.dao.database.service.version
The Interface VersionService.
AUTO_GENERATED_BY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
AutoPanAction() - Constructor for class org.LexGrid.LexBIG.gui.displayResults.GraphView.AutoPanAction
 
AutoPanAction() - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDGraphView.AutoPanAction
 
AutoReconnectDirContext - Class in org.LexGrid.util.ldap
This class is an automatically reconnecting ldap dir context.
AutoReconnectDirContext(Hashtable, boolean) - Constructor for class org.LexGrid.util.ldap.AutoReconnectDirContext
 
autoRegisterIndex(String, String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 

B

BASE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
BaseDef - Class in org.lexgrid.lexevs.ndfrt.data
 
BaseDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.BaseDef
 
baseExport(boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
BaseExporter - Class in org.LexGrid.LexBIG.Impl.exporters
Base class with common methods for exporters.
BaseExporter() - Constructor for class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
BaseListenerRegistry - Class in org.lexevs.dao.database.service.event.registry
The Class BaseListenerRegistry.
BaseListenerRegistry() - Constructor for class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
baseLoad(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
BaseLoader - Class in org.LexGrid.LexBIG.Impl.loaders
Common loader code.
BaseLoader() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
BaseLoader.DoConversion - Class in org.LexGrid.LexBIG.Impl.loaders
 
BaseLuceneIndexTemplate - Class in org.lexevs.dao.index.lucenesupport
 
BaseLuceneIndexTemplate() - Constructor for class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
BaseLuceneIndexTemplate(LuceneDirectoryFactory.NamedDirectory) - Constructor for class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
BaseLuceneIndexTemplate.IndexReaderCallback<T> - Interface in org.lexevs.dao.index.lucenesupport
 
BaseLuceneIndexTemplate.IndexSearcherCallback<T> - Interface in org.lexevs.dao.index.lucenesupport
 
BaseLuceneIndexTemplate.IndexWriterCallback<T> - Interface in org.lexevs.dao.index.lucenesupport
 
BaseLuceneIndexTemplate.ToParentBlockJoinIndexSearcherCallback<T> - Interface in org.lexevs.dao.index.lucenesupport
 
baseMessageDirector_ - Variable in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
The base message director_.
BaseMetaDataLoader - Class in org.lexevs.dao.index.metadata
Base class for building a metadata index for LexFoo metadata.
BaseMetaDataLoader() - Constructor for class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
BaseOption<T> - Interface in org.LexGrid.LexBIG.Extensions.Load.options
The Interface BaseOption.
BasePreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Base class to load loader preferences from an XML file
BasePreferenceLoader() - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
baseValueSetURI(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
BasicListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class BasicListProcessor.
BasicListProcessor() - Constructor for class org.lexgrid.loader.processor.BasicListProcessor
 
BasicListProcessorTest - Class in org.lexgrid.loader.processor
The Class BasicListProcessorTest.
BasicListProcessorTest() - Constructor for class org.lexgrid.loader.processor.BasicListProcessorTest
 
BasicXMLParser - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
XML parsing for complex properties blocks in terminologies produced in OWL by NCI
BasicXMLParser() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
BasicXMLParser - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
XML parsing for complex properties blocks in terminologies produced in OWL by NCI
BasicXMLParser() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
batch - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
The batch.
batch - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
The batch.
BatchInserter - Interface in org.lexevs.dao.database.inserter
The Interface BatchInserter.
BatchOrderClassifier - Class in org.lexevs.dao.database.ibatis.batch
 
BatchOrderClassifier() - Constructor for class org.lexevs.dao.database.ibatis.batch.BatchOrderClassifier
 
batchSize - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
BeanReflectionTruncator - Class in org.lexgrid.loader.processor.support
The Class BeanReflectionTruncator.
BeanReflectionTruncator() - Constructor for class org.lexgrid.loader.processor.support.BeanReflectionTruncator
 
before() - Method in class org.LexGrid.LexBIG.admin.TestEhcacheStartUpOutputRemoval
 
beforeJob(JobExecution) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
beforeJob(JobExecution) - Method in class org.lexgrid.loader.listener.CleanupListener
 
beforeJob(JobExecution) - Method in class org.lexgrid.loader.listener.SetupListener
 
beforeProcessing(List<I>) - Method in class org.lexgrid.loader.processor.AbstractListProcessor
Before processing.
beforeProcessing(List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
Before processing.
beforeProcessing(List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
Before processing.
beforeProcessing(List<I>) - Method in class org.lexgrid.loader.processor.PreFilteringListProcessor
 
beforeProcessing(List<I>) - Method in class org.lexgrid.loader.processor.SortingListProcessor
 
beforeProcessing(List<Mrsty>) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
beforeStep(StepExecution) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
beforeStep(StepExecution) - Method in class org.lexgrid.loader.listener.StepCompletionListener
 
BIGDECIMAL - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
bind(Name, Object, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
bind(String, Object) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
bind(String, Object, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
bind(Name, Object) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
BIOONTOLOGY_LSID_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
black - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
BLANK - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
BLOB - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
blockJoinSearch(Query, Filter, TopScoreDocCollector) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
blockJoinSearch(Query, Filter) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
blockJoinSearch(Query, Filter, TopScoreDocCollector) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
blockJoinSearch(Query, Filter, TopScoreDocCollector) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
blockJoinSearch(Query, Filter, TopScoreDocCollector) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
BLTNREL_DISJFROM_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_DISJFROM_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_DISJFROM_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_DISJFROM_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_DISJFROM_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_DISJFROM_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INSTOF_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INTRSECOF_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_INVOF_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_ISA_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_DEFSRC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
BLTNREL_UNIONOF_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
blue - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
BOOLEAN - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
BooleanOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class BooleanOption.
BooleanOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.BooleanOption
Instantiates a new boolean option.
BooleanOption(String, Boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.BooleanOption
Instantiates a new boolean option.
breakOnCommonDiff(String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
BROWSER_VS_DEFINITION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
BROWSER_VS_DEFINITION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
browserVsDescription(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
BufferedGroupItemReader<I> - Class in org.lexgrid.loader.reader
The Class BufferedGroupItemReader.
BufferedGroupItemReader() - Constructor for class org.lexgrid.loader.reader.BufferedGroupItemReader
 
build() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
build(String, String, String, String, List<String>, String, String, List<Source>) - Method in class org.lexgrid.valuesets.helper.CodingSchemeBuilder
 
BUILD_DB_METAPHONE - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
BUILD_STEM - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
buildAnonymousCodeExclusion(DbColumn) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Builds the anonymous code exclusion.
buildAnonymousCodeExclusion(DbColumn) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Builds the anonymous code exclusion.
buildApplicationContext(String) - Method in interface org.lexevs.locator.LexEvsServiceLocator.ApplicationContextCallback
 
BuildAssertedValueSetIndex - Class in org.LexGrid.LexBIG.admin
Builds indexes associated with the source asserted value sets of the specified coding scheme.
BuildAssertedValueSetIndex() - Constructor for class org.LexGrid.LexBIG.admin.BuildAssertedValueSetIndex
 
buildAssociationEntity(String, String, String) - Method in class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
Builds the association.
buildAssociationList(GNode, boolean, int, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Create and return the list of associations for the given node, resolved to the specified depth and modified according to parameter values.
buildCacheKey(URIMap) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
buildChildNodeIterator(LexEvsTreeNode, boolean) - Method in class org.lexevs.tree.dao.iterator.ChildTreeNodeIteratorFactory
Deprecated.
Builds the child node iterator.
buildChildNodeIterator(LexEvsTreeNode, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.ChildTreeNodeIteratorFactory
Builds the child node iterator.
buildChildrenNodes(LexEvsTreeNode) - Method in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
 
buildChildrenNodes(LexEvsTreeNode, int) - Method in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
 
buildChildrenNodes(LexEvsTreeNode) - Method in interface org.lexevs.tree.json.JsonConverter
Deprecated.
Builds the children nodes.
buildChildrenNodes(LexEvsTreeNode, int) - Method in interface org.lexevs.tree.json.JsonConverter
Deprecated.
Builds the children nodes, starting from a given 'page' of results.
buildChildrenNodes(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
 
buildChildrenNodes(LexEvsTreeNode, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
 
buildChildrenNodes(LexEvsTreeNode) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.json.JsonConverter
Builds the children nodes.
buildChildrenNodes(LexEvsTreeNode, int) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.json.JsonConverter
Builds the children nodes, starting from a given 'page' of results.
buildChildrenPathToRootNodes(LexEvsTreeNode) - Method in class org.lexevs.tree.evstree.ChildPagingEvsTreeConverter
Deprecated.
Builds the children path to root nodes.
buildChildrenPathToRootNodes(LexEvsTreeNode) - Method in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
Builds the children path to root nodes.
buildChildrenPathToRootNodes(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
Builds the children path to root nodes.
buildChildrenPathToRootNodes(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
Builds the children path to root nodes.
buildCodedEntry(String, String, String, String, LocalNameList, PropertyDao.PropertyType[]) - Method in interface org.lexevs.dao.database.access.codednodeset.CodedNodeSetDao
Builds the coded entry.
buildCodedEntry(String, String, String, String, LocalNameList, CodedNodeSet.PropertyType[]) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
buildCodedEntry(String, String, String, String, LocalNameList, PropertyDao.PropertyType[]) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
buildCodedEntry(String, String, String, String, LocalNameList, CodedNodeSet.PropertyType[]) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Builds the coded entry.
buildCodedEntry(String, String, String, String, LocalNameList, CodedNodeSet.PropertyType[]) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
buildCodeHolder(Set<? extends AbsoluteCodingSchemeVersionReference>, Query) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyCodeHolderFactory
 
buildCodeHolder(CodeHolder, Set<? extends AbsoluteCodingSchemeVersionReference>, Query) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyCodeHolderFactory
 
buildCodeHolder(Set<? extends AbsoluteCodingSchemeVersionReference>, Query) - Method in interface org.LexGrid.LexBIG.Impl.helpers.lazyloading.CodeHolderFactory
 
buildCodeHolder(CodeHolder, Set<? extends AbsoluteCodingSchemeVersionReference>, Query) - Method in interface org.LexGrid.LexBIG.Impl.helpers.lazyloading.CodeHolderFactory
 
buildCodeToReturn(ScoreDoc, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyCodeHolderFactory
Builds the code to return.
buildCodeToReturn(ScoreDoc, List<AbsoluteCodingSchemeVersionReference>) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyCodeHolderFactory
 
buildCodeToReturn() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Builds the code to return.
buildCodeToReturn(ScoreDoc, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyCodeHolderFactory
 
buildCodeToReturn(ScoreDoc, List<AbsoluteCodingSchemeVersionReference>) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyCodeHolderFactory
 
buildCodingScheme(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Builds the coding scheme.
buildCodingScheme(URI, LgMessageDirectorIF, boolean, CodingSchemeManifest) - Method in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
buildComponents(CodingScheme, String) - Method in class org.LexGrid.LexBIG.gui.CodeSystemDetails
 
buildComponents() - Method in class org.LexGrid.LexBIG.gui.history.HistorySearch
 
buildComponents() - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
buildConceptEntityDescription(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Deprecated.
buildConceptEntityDescription(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
buildConceptReferenceList(String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
 
buildDefaultAssociationPredicate(String) - Method in class org.lexgrid.loader.database.key.AssociationPredicateCreatingKeyResolver
 
buildDefaultUnresolvedReport() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
Builds the default unresolved report.
buildDocument() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
 
buildDocument() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.CommonIndexLazyLoadableCodeToReturn
 
buildDocument() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyLazyCodeToReturn
 
buildEntityAssnsToEquals(I, QualifierResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
Builder(String, boolean, boolean, List<String>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
Builder() - Constructor for class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
Builder(String) - Constructor for class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
buildEvsTreePathFromRootTree(LexEvsTreeNode) - Method in class org.lexevs.tree.evstree.ChildPagingEvsTreeConverter
Deprecated.
 
buildEvsTreePathFromRootTree(LexEvsTreeNode) - Method in interface org.lexevs.tree.evstree.EvsTreeConverter
Deprecated.
Builds the json path from root tree.
buildEvsTreePathFromRootTree(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
 
buildEvsTreePathFromRootTree(LexEvsTreeNode) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.EvsTreeConverter
Builds the json path from root tree.
buildExtensionDescription() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
Builds the extension description.
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement.SupplementExtensionImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.ContainsSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.DoubleMetaphoneSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.ExactMatchSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LeadingAndTrailingWildcardSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralContainsSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSubStringSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LuceneSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.NonLeadingWildcardLiteralSubStringSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.PhraseSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.RegExpSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SpellingErrorTolerantSubStringSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.StartsWithSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.StemmedSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SubStringSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.WeightedDoubleMetaphoneSearch
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiResolvedValueSetLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.ApproxNumOfConceptsPostProcessor
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
buildExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
buildExtensionDescription() - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
buildExtensionDescription() - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
buildExtensionDescription() - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
buildExtensionDescription() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
buildInsertCodingSchemeBean(String, String, String, String, CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Builds the insert coding scheme bean.
buildInsertEntityParamaterBean(String, String, String, String, String, Entity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Builds the insert entity paramater bean.
buildInsertEntryStateBean(String, String, String, String, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
Builds the insert entry state bean.
buildInsertEntryStateBean(String, String, String, String, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
Builds the insert entry state bean.
buildInsertLocalNameBean(String, String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Builds the insert local name bean.
buildInsertOrUpdateSourceBean(String, String, String, String, Source) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Builds the insert source bean.
buildInsertOrUpdateURIMapBean(String, String, String, String, URIMap) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Builds the insert uri map bean.
buildInsertOrUpdateURIMapBean(String, String, String, String, URIMap) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
Builds the insert uri map bean.
buildInsertOrUpdateURIMapBean(String, String, String, String, URIMap) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
Builds the insert uri map bean.
buildInsertPropertyBean(String, String, String, String, PropertyDao.PropertyType, Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Builds the insert property bean.
buildInsertPropertyBean(String, String, String, String, VSPropertyDao.ReferenceType, Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Builds the insert property bean.
buildInsertPropertyQualifierBean(String, String, String, String, PropertyQualifier) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Builds the insert property qualifier bean.
buildInsertPropertyQualifierBean(String, String, String, PropertyQualifier) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Builds the insert property qualifier bean.
buildInsertPropertySourceBean(String, String, String, String, Source) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Builds the insert property source bean.
buildInsertPropertySourceBean(String, String, String, Source) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Builds the insert property source bean.
buildInsertPropertyUsageContextBean(String, String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Builds the insert property usage context bean.
buildInsertPropertyUsageContextBean(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Builds the insert property usage context bean.
buildJobParameters(Properties) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
Builds the job parameters.
buildJsonPathFromRootTree(LexEvsTreeNode) - Method in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
 
buildJsonPathFromRootTree(LexEvsTreeNode) - Method in interface org.lexevs.tree.json.JsonConverter
Deprecated.
Builds the json path from root tree.
buildJsonPathFromRootTree(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
 
buildJsonPathFromRootTree(LexEvsTreeNode) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.json.JsonConverter
Builds the json path from root tree.
buildKnownCodesCondition(List<String>, DbColumn) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Builds the known codes condition.
buildKnownCodesCondition(List<String>, DbColumn) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Builds the known codes condition.
buildLexEvsTreeNode(AssociatedConcept, Map<String, LexEvsTreeNode>) - Method in class org.lexevs.tree.transform.AssociationListToTreeNodeList
Deprecated.
Builds the lex evs tree node.
buildLexEvsTreeNode(AssociatedConcept, Map<String, LexEvsTreeNode>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.transform.AssociationListToTreeNodeList
Builds the lex evs tree node.
buildMap() - Method in class org.lexevs.dao.database.constants.classifier.mapping.AbstractMappingClassifier
Builds the map.
BuildMatchAlgorithmQuery - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
BuildMatchAlgorithmQuery.Builder - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
BuildMatchAlgorithmQueryTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
BuildMatchAlgorithmQueryTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
buildMatchQuery() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
buildMonoLithicSourceAssertedValueSetIndex(AbsoluteCodingSchemeVersionReference, boolean) - Method in class org.LexGrid.LexBIG.admin.BuildAssertedValueSetIndex
Rebuild a single named index extension for the specified scheme.
buildMonoLithicSourceAssertedValueSetIndex(AbsoluteCodingSchemeVersionReference, boolean) - Method in class org.lexgrid.valuesets.admin.IndexResolvedandAssertedValueSets
Rebuild a single named index extension for the specified scheme.
buildOnMatchAlgorithm(String, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
buildOptionValue(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.options.CodingSchemeReferencesStringArrayPickListOption
 
buildPaths(ResolvedConceptReference, String, CodingSchemeVersionOrTag, String, CodedNodeSet) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Build and return a tree item that represents the hierarchical entries for the given concept reference and hierarchical context identifier (HCD).
buildPathsToLowerNodes(FindUMLSContextsForCUI.TreeItem, ResolvedConceptReference, String, CodingSchemeVersionOrTag, String, CodedNodeSet, Map<String, FindUMLSContextsForCUI.TreeItem>) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Add all hierarchical relationships that start from the referenced concept and move forward in the tree.
buildPathsToRoot(ResolvedConceptReference, String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Build and returns tree items that represent the root and core concepts of resolved paths for printing.
buildPathsToUpperNodes(BuildTreeForMetaCodeBySource.TreeItem, ResolvedConceptReference, String, CodingSchemeVersionOrTag, String, Map<String, BuildTreeForMetaCodeBySource.TreeItem>, Set<BuildTreeForMetaCodeBySource.TreeItem>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Add all hierarchical paths to root that start from the referenced concept and move backward in the tree.
buildPathsToUpperNodes(FindUMLSContextsForCUI.TreeItem, ResolvedConceptReference, String, CodingSchemeVersionOrTag, String, CodedNodeSet, Map<String, FindUMLSContextsForCUI.TreeItem>, Set<FindUMLSContextsForCUI.TreeItem>) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Add all hierarchical relationships that start from the referenced concept and move backward in the tree.
buildPresentation(String, String, Mrconso, boolean) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
buildProperty(String, String, Mrconso, PropertyResolver<Mrconso>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
buildPropertyQualifiers(String, String, Mrconso) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
buildPropertySources(String, String, Mrconso) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
buildQuery(String) - Method in interface org.LexGrid.LexBIG.Extensions.Query.Search
Generate a Lucene Query given a text String.
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchBoostingSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.DoubleMetaphoneSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralContainsSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LuceneSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.PhraseSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.RegExpSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.StemmedSearch
 
buildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.WeightedDoubleMetaphoneSearch
 
buildQuery(String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
 
buildResolvedConceptReference(CodeToReturn, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeToReturnResolver
Builds the resolved concept reference.
buildResolvedConceptReference(List<CodeToReturn>, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeToReturnResolver
 
buildResolvedConceptReference(CodeToReturn, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeToReturnResolver
 
buildResolvedConceptReference(List<CodeToReturn>, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeToReturnResolver
 
buildResolvedConceptReference(GNode, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
buildResolvedConceptReferenceList(ResolvedConceptReferencesIterator, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
buildRootNode(String, boolean, UMLSBaseCode.SABString[], String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Build relations to an artificial root ('@') or tail ('@@') node to assist with navigation of one or more associations.
buildRootNode(String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Builds the root node.
buildRootNode(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Builds the root node.
buildRootNode(AbsoluteCodingSchemeVersionReference, List<String>, String, LexEvsDatabaseOperations.RootOrTail, LexEvsDatabaseOperations.TraverseAssociations) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Build root (or tail) nodes.
buildRootNodes(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Build navigable relations from special endpoint nodes '@' and '@@' to first level nodes in hierarchical associations.
buildRootNodes(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSToSQL
Build navigable relations from special endpoint nodes '@' and '@@' to first level nodes in hierarchical associations.
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
Builds the sort description.
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodePostSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSystemSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.ConceptStatusSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionPostSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.isActiveSort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
buildSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.NumberOfChildrenSort
 
buildSourceOfAssociationList(String, String, String, String, String, boolean, boolean, int, int, int, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
Builds the source of association list.
buildSpanNearQuery(String[], String, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SpellingErrorTolerantSubStringSearch
Builds the span near query.
buildSql(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int, boolean) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
 
buildSql(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.dao.sqlbuilder.GetNodeSqlBuilder
Deprecated.
Builds the sql.
buildSql(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
 
buildSql(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetNodeSqlBuilder
Builds the sql.
buildStubAssociatedConcept(AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
Builds the stub associated concept.
buildTargetOfAssociationList(String, String, String, String, String, boolean, boolean, int, int, int, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
Builds the target of association list.
BuildTransitivityTableIssuesWithMock - Class in org.lexevs.dao.database.operation.transitivity
 
BuildTransitivityTableIssuesWithMock() - Constructor for class org.lexevs.dao.database.operation.transitivity.BuildTransitivityTableIssuesWithMock
 
buildTree() - Method in class org.lexevs.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
buildTree() - Method in class org.lexevs.tree.model.LexEvsTreeNodeTest
 
buildTree() - Method in class org.lexevs.tree.model.LexEvsTreeTest
 
buildTree() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
buildTree() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeTest
 
buildTree() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeTest
 
BuildTreeForCode - Class in org.LexGrid.LexBIG.example
Attempts to provide a tree, based on a focus code, that includes the following information: - All paths from the hierarchy root to one or more focus codes
BuildTreeForCode() - Constructor for class org.LexGrid.LexBIG.example.BuildTreeForCode
 
BuildTreeForCode.TreeItem - Class in org.LexGrid.LexBIG.example
Inner class to hold tree items for printout.
BuildTreeForMetaCodeBySource - Class in org.LexGrid.LexBIG.example
NOTE: This example is intended to run only against code systems representing the entire Metathesaurus.
BuildTreeForMetaCodeBySource() - Constructor for class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
 
BuildTreeForMetaCodeBySource.TreeItem - Class in org.LexGrid.LexBIG.example
Inner class to hold tree items for printout.
buildTreeWithAnonymousNode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
BUILT_IN_ASSOCIATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
BUILT_IN_SPECIAL_ASSOCIATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
busy() - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Output to indicate system is busy - spin a cursor, print a dot, etc.
busy() - Method in class org.lexevs.logging.Logger
 
busy() - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
busy() - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
Output to indicate system is busy.
busy() - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
busy() - Method in class org.lexevs.logging.SimpleLogger
 
busy() - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
busy() - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
busy() - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Output to indicate system is busy - spin a cursor, print a dot, etc.
BYTE - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
BYTES - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 

C

Cacheable - Annotation Type in org.lexevs.cache.annotation
The Interface Cacheable.
CacheConfigLocationFactory - Class in org.lexevs.cache
 
CacheConfigLocationFactory() - Constructor for class org.lexevs.cache.CacheConfigLocationFactory
 
CacheMethod - Annotation Type in org.lexevs.cache.annotation
The Interface CacheMethod.
cacheMethod(ProceedingJoinPoint) - Method in class org.lexevs.cache.MethodCachingProxy
 
CacheRegistry - Class in org.lexevs.cache
 
CacheRegistry() - Constructor for class org.lexevs.cache.CacheRegistry
 
CacheRegistry.CacheWrapper<K,V> - Interface in org.lexevs.cache
 
CacheRegistry.EhCacheWrapper<K extends java.io.Serializable,V> - Class in org.lexevs.cache
 
CacheSessionManager - Class in org.lexevs.cache
 
CacheSessionManager() - Constructor for class org.lexevs.cache.CacheSessionManager
 
CacheWrappingFactory - Class in org.lexevs.cache
 
CacheWrappingFactory() - Constructor for class org.lexevs.cache.CacheWrappingFactory
 
CachingHierarchyResolver - Class in org.lexevs.tree.dao.hierarchy
Deprecated.
CachingHierarchyResolver() - Constructor for class org.lexevs.tree.dao.hierarchy.CachingHierarchyResolver
Deprecated.
 
CachingHierarchyResolver - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy
The Class CachingHierarchyResolver.
CachingHierarchyResolver() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.CachingHierarchyResolver
 
CachingMessageDirectorIF - Interface in org.LexGrid.LexBIG.Utility.logging
This interface extends the LgMessageDirectorIF to add caching of messages.
CachingMessageDirectorImpl - Class in org.lexevs.logging.messaging.impl
The class implements the CachingMessageDirectorIF interface and is used to log the messages generated by programs into a Collection so they can be easily retrieved for later use.
CachingMessageDirectorImpl(LgMessageDirectorIF) - Constructor for class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
Instantiates a new caching message director impl.
CachingSupportedAttribuiteTemplate - Class in org.lexgrid.loader.dao.template
The Class CachingSupportedAttribuiteTemplate.
CachingSupportedAttribuiteTemplate() - Constructor for class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
CachingSupportedAttribuiteTemplateTest - Class in org.lexgrid.loader.dao.template
The Class CachedSupportedAttributeSupportTest.
CachingSupportedAttribuiteTemplateTest() - Constructor for class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplateTest
 
CAN_PUBLISH - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
cancel() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
CastorProxy - Interface in org.LexGrid.proxy
Marker interface -- forces Castor to marshal the super-class.
CategoryNameValue<C,V> - Class in org.LexGrid.LexBIG.Impl.loaders.helpers
 
CategoryNameValue(C, V) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.helpers.CategoryNameValue
 
CHANGE_TYPE - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
ChangedEntry - Class in org.LexGrid.versions
A top level versionable entry.
ChangedEntry() - Constructor for class org.LexGrid.versions.ChangedEntry
 
ChangedEntryDescriptor - Class in org.LexGrid.versions.descriptors
Class ChangedEntryDescriptor.
ChangedEntryDescriptor() - Constructor for class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
 
changesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceView
 
changesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierView
 
changesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceView
 
changesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceView
 
ChangeType - Enum in org.LexGrid.LexBIG.DataModel.NCIHistory.types
Atomic modification actions.
ChangeType - Enum in org.LexGrid.versions.types
The type of state change between the current versionable entry and the previous.
ChangeTypeDescriptor - Class in org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors
Class ChangeTypeDescriptor.
ChangeTypeDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
 
ChangeTypeDescriptor - Class in org.LexGrid.versions.types.descriptors
Class ChangeTypeDescriptor.
ChangeTypeDescriptor() - Constructor for class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
 
characters(char[], int, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
characters(char[], int, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
characters(char[], int, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
checkBoxFactory(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
checkCodingSchemeService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManagerTest
Check coding scheme service.
checkEntityService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManagerTest
Check entity service.
checkEntryConditions() - Method in class org.lexevs.logging.SimpleEmailAppender
Check entry conditions.
checkFocus(String, String, String, String, String, boolean, boolean, GraphQuery) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
checkFocus(String, String, String, String, String, boolean, boolean, GraphQuery, boolean) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
checkFocus(String, String, String, ResolvedConceptReference, boolean, boolean, Filter[], GraphQuery, boolean, boolean) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
CheckForConceptInValueSet - Class in org.LexGrid.LexBIG.example
Example showing how to find if a coded concept belongs to a value set.
CheckForConceptInValueSet() - Constructor for class org.LexGrid.LexBIG.example.CheckForConceptInValueSet
 
checkForRegistryUpdates() - Method in class org.lexevs.registry.WriteLockManager
See if another vm or thread has written a newer version of the registry file.
CheckForValueSetSubSet - Class in org.LexGrid.LexBIG.example
Example showing how to find if one value set is a subset of another.
CheckForValueSetSubSet() - Constructor for class org.LexGrid.LexBIG.example.CheckForValueSetSubSet
 
checkInPreparedStatement(PreparedStatement) - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Check in prepared statement.
checkInPreparedStatement(PreparedStatement) - Method in class org.lexevs.dao.database.connection.SQLInterface
Check in prepared statement.
checkOutPreparedStatement(String) - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Check out prepared statement.
checkOutPreparedStatement(String) - Method in class org.lexevs.dao.database.connection.SQLInterface
Check out prepared statement.
checkProperyService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManagerTest
Check propery service.
checkResult(JdbcTemplate, String) - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Check result.
checkResult(JdbcTemplate, String) - Method in class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
 
checkTransitivity(String, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
Check the AssociationEntity defined by the SupportedHierarchy(s).
CHILD_REL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
ChildPagingEvsTreeConverter - Class in org.lexevs.tree.evstree
Deprecated.
ChildPagingEvsTreeConverter() - Constructor for class org.lexevs.tree.evstree.ChildPagingEvsTreeConverter
Deprecated.
 
ChildPagingEvsTreeConverter - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.evstree
The Class ChildPagingJsonConverter.
ChildPagingEvsTreeConverter() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
 
ChildPagingEvsTreeConverter(int) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
 
ChildPagingJsonConverter - Class in org.lexevs.tree.json
Deprecated.
ChildPagingJsonConverter() - Constructor for class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
 
ChildPagingJsonConverter - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.json
The Class ChildPagingJsonConverter.
ChildPagingJsonConverter() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
 
ChildPagingJsonConverter(int) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
 
CHILDREN_NODES - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant CHILDREN_NODES.
CHILDREN_NODES - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant CHILDREN_NODES.
ChildTreeNodeIterator - Interface in org.lexevs.tree.dao.iterator
Deprecated.
ChildTreeNodeIterator - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator
The Interface ChildTreeNodeIterator.
ChildTreeNodeIteratorFactory - Class in org.lexevs.tree.dao.iterator
Deprecated.
ChildTreeNodeIteratorFactory(LexEvsTreeDao, String, CodingSchemeVersionOrTag, LexEvsTreeDao.Direction, List<String>, int) - Constructor for class org.lexevs.tree.dao.iterator.ChildTreeNodeIteratorFactory
Deprecated.
Instantiates a new child tree node iterator factory.
ChildTreeNodeIteratorFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator
A factory for creating ChildTreeNodeIterator objects.
ChildTreeNodeIteratorFactory(LexEvsTreeDao, String, CodingSchemeVersionOrTag, LexEvsTreeDao.Direction, List<String>, int) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.ChildTreeNodeIteratorFactory
Instantiates a new child tree node iterator factory.
ClaML2LG - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
ClaML2LG() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaML2LG
 
ClaML2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
ClaML2LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaML2LGMain
 
ClaML_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
 
CLAML_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
ClaMLConfig - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml.config
 
ClaMLConfig(LoaderPreferences) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
ClaMLConfig() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
ClaMLConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml
Contains ClaML domain knowledge
ClaMLConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
ClaMLConstants.ClassKinds - Enum in edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
ClaMLConstants.RubricKinds - Enum in edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
ClaMLLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
ClaMLLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
ClaMLUtils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml
The Class ClaMLUtils.
ClaMLUtils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLUtils
 
ClaMLXMLReader - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
ClaMLXMLReader() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLXMLReader
 
ClassifierCompositeProcessor<I> - Class in org.lexgrid.loader.processor
The Class ClassifierCompositeProcessor.
ClassifierCompositeProcessor() - Constructor for class org.lexgrid.loader.processor.ClassifierCompositeProcessor
 
ClassifierCompositeProcessorTest - Class in org.lexgrid.loader.processor
The Class ClassifierCompositeProcessorTest.
ClassifierCompositeProcessorTest() - Constructor for class org.lexgrid.loader.processor.ClassifierCompositeProcessorTest
 
classify(I) - Method in class org.lexevs.dao.database.constants.classifier.mapping.AbstractMappingClassifier
 
classify(VersionsDao.EntryStateType) - Method in class org.lexevs.dao.database.constants.classifier.property.EntryStateTypeClassifier
 
classify(Class<?>) - Method in class org.lexevs.dao.database.constants.classifier.property.PropertyMultiAttributeClassifier
 
classify(PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.constants.classifier.property.PropertyTypeClassifier
 
classify(String) - Method in class org.lexevs.dao.database.ibatis.batch.BatchOrderClassifier
 
classify(Object) - Method in class org.lexgrid.loader.writer.classifier.WriterClassifier
 
classname() - Method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
ClassToStringMappingClassifier - Class in org.lexevs.dao.database.constants.classifier.mapping
The Class ClassToStringMappingClassifier.
ClassToStringMappingClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.mapping.ClassToStringMappingClassifier
 
cleanTables(String) - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
Remove all data from the tables of a given Coding Scheme
cleanTables(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Deletes all the data from the tables of a given Coding Scheme does not delete data from system release or nci history tables
cleanUp(List<AbsoluteCodingSchemeVersionReference>, boolean) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
cleanUp(List<AbsoluteCodingSchemeVersionReference>, boolean) - Method in interface org.lexevs.dao.index.operation.LexEvsIndexOperations
 
cleanUp() - Static method in class org.LexGrid.LexBIG.admin.TestEhcacheStartUpOutputRemoval
 
CleanUp - Class in org.LexGrid.LexBIG.gui.config
This GUI allows you to run the LexBIG clean up utility.
CleanUp(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.config.CleanUp
 
cleanUp() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Clean up.
CleanupListener - Class in org.lexgrid.loader.listener
The listener interface for receiving cleanup events.
CleanupListener() - Constructor for class org.lexgrid.loader.listener.CleanupListener
 
CleanUpLuceneIndexLauncher - Class in org.lexevs.dao.index.operation.tools
 
CleanUpLuceneIndexLauncher() - Constructor for class org.lexevs.dao.index.operation.tools.CleanUpLuceneIndexLauncher
 
CleanUpMetadataLauncher - Class in org.LexGrid.LexBIG.admin
 
CleanUpMetadataLauncher() - Constructor for class org.LexGrid.LexBIG.admin.CleanUpMetadataLauncher
 
CleanUpResolvedValueSetUpdateLoads - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
CleanUpResolvedValueSetUpdateLoads() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.CleanUpResolvedValueSetUpdateLoads
 
CleanUpThread() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl.CleanUpThread
 
CleanUpUtility - Class in org.LexGrid.LexBIG.Impl.dataAccess
 
CleanUpUtility() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
CleanUpUtilityTest - Class in org.LexGrid.LexBIG.Impl.dataAccess
 
CleanUpUtilityTest() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtilityTest
 
cleanupUtilsTest() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtilityTest
 
clear() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
clear() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
clear() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
clear() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
clear() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
clear() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
clear() - Method in interface org.lexevs.cache.CacheRegistry.CacheWrapper
 
clear() - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
clear(AbsoluteCodingSchemeVersionReference, Index, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Index.IndexLoader
Remove index entries for the designated coding scheme.
clear() - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
clear() - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.CycleDetectingCallback
 
clear() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.ReferenceReturningCycleDetectingCallback
 
clear() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
 
clearAll() - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
clearAll() - Method in class org.lexevs.cache.CacheRegistry
 
clearBatch() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
clearCache(T, Method) - Method in class org.lexevs.cache.AbstractMethodCachingBean
Clear cache.
ClearCache - Annotation Type in org.lexevs.cache.annotation
The Interface ClearCache.
clearCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Clear cache.
clearCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Clear cache.
clearLog() - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
clearLog() - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Clears any associated log entries.
clearLog() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Clears any associated log entries.
clearLog() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
clearLog() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
clearLog() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
clearLog() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
clearLog() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
clearLog() - Method in interface org.LexGrid.LexBIG.Utility.logging.CachingMessageDirectorIF
Clear log.
clearMessages() - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
clearMessages() - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
clearParameters() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
clearWarnings() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
clearWarnings() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
CLOB - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
clone() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
 
clone() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
clone() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
clone() - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
 
clone() - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
clone() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
cloneEntryState(EntryState, ChangeType) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
close() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.RRFLineReader
 
close() - Method in class org.lexevs.logging.SimpleEmailAppender
 
close() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
close() - Method in class org.lexgrid.loader.writer.NoClosingRootTagStaxEventItemWriter
 
close() - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
close() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
close() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
closeBtn - Variable in class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell.ButtonUpdater
 
closeConnections() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
closeLoadStatements() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
closeOnCompletion() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
closeStreamedRead() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
cNew - Variable in class org.LexGrid.util.file.CopyrightFieldScrubber
 
cng - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
 
cng - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
 
cns - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
 
cns - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
 
cns - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWLUnitTests
 
CnsCngPair - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util
 
CnsCngPair(CodedNodeSet, CodedNodeGraph) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.CnsCngPair
 
code - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
code - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
code - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.CodeHolder
Deprecated.
 
code - Variable in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
code - Variable in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
code - Variable in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
code - Variable in class org.lexgrid.lexevs.ndfrt.data.BaseDef
 
CODE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
CODE_NAMESPACE_DELIMITER - Static variable in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
CODE_SYSTEM - Static variable in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
CODE_SYSTEM_OID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
CodeCodingSchemePair - Class in org.lexgrid.loader.wrappers
The Class CodeCodingSchemePair.
CodeCodingSchemePair() - Constructor for class org.lexgrid.loader.wrappers.CodeCodingSchemePair
 
CodeCodingSchemePair(String, String) - Constructor for class org.lexgrid.loader.wrappers.CodeCodingSchemePair
 
CodedNodeGraph - Class in org.LexGrid.LexBIG.gui.codeSet
Holder class for constructing graphs.
CodedNodeGraph(CodingSchemeRendering) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
CodedNodeGraph(CodedNodeGraph, CodedNodeGraph, int) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
CodedNodeGraph(CodedNodeGraph, CodedNodeSet, int) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
CodedNodeGraph - Interface in org.LexGrid.LexBIG.LexBIGService
A virtual graph where the edges represent associations and the nodes represent coded entries.
CodedNodeGraphDao - Interface in org.lexevs.dao.database.access.codednodegraph
The Interface CodedNodeGraphDao.
CodedNodeGraphDao.TripleNode - Enum in org.lexevs.dao.database.access.codednodegraph
 
CodedNodeGraphFactory - Class in org.LexGrid.LexBIG.Impl
A factory for creating CodedNodeGraph objects.
CodedNodeGraphFactory() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeGraphFactory
 
CodedNodeGraphImpl - Class in org.LexGrid.LexBIG.Impl
This class implements the CodedNodeGraph interface.
CodedNodeGraphImpl() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
This constructor is only here for Apache Axis to work correctly.
CodedNodeGraphImpl(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
CodedNodeGraphImplTest - Class in org.LexGrid.LexBIG.Impl
JUnit test cases for the coded node graph.
CodedNodeGraphImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
CodedNodeGraphService - Interface in org.lexevs.dao.database.service.codednodegraph
The Interface CodedNodeGraphService.
CodedNodeGraphService.Order - Enum in org.lexevs.dao.database.service.codednodegraph
The Enum Order.
CodedNodeGraphService.QualifierSort - Class in org.lexevs.dao.database.service.codednodegraph
The Class QualifierSort.
CodedNodeGraphService.Sort - Class in org.lexevs.dao.database.service.codednodegraph
The Class Sort.
CodedNodeReference - Class in org.LexGrid.LexBIG.DataModel.Core
A reference to an entity in the coding scheme by code, optionally qualified by namespace and type.
CodedNodeReference() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
CodedNodeReferenceDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class CodedNodeReferenceDescriptor.
CodedNodeReferenceDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
 
CodedNodeReferenceList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class CodedNodeReferenceList.
CodedNodeReferenceList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
CodedNodeReferenceListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class CodedNodeReferenceListDescriptor.
CodedNodeReferenceListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
 
CodedNodeSet - Class in org.LexGrid.LexBIG.gui.codeSet
Holder class for constructing coded node sets.
CodedNodeSet(CodingSchemeRendering) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodedNodeSet
 
CodedNodeSet(CodedNodeSet, CodedNodeSet, int) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodedNodeSet
 
CodedNodeSet - Interface in org.LexGrid.LexBIG.LexBIGService
A coded node set represents a flat list of coded entries.
CodedNodeSet.ActiveOption - Enum in org.LexGrid.LexBIG.LexBIGService
 
CodedNodeSet.AnonymousOption - Enum in org.LexGrid.LexBIG.LexBIGService
 
CodedNodeSet.PropertyType - Enum in org.LexGrid.LexBIG.LexBIGService
 
CodedNodeSet.SearchDesignationOption - Enum in org.LexGrid.LexBIG.LexBIGService
 
CodedNodeSetBackedMapping - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class CodedNodeSetBackedMapping.
CodedNodeSetBackedMapping() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
Instantiates a new coded node set backed mapping.
CodedNodeSetBackedMapping(AbsoluteCodingSchemeVersionReference, String) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
Instantiates a new coded node set backed mapping.
CodedNodeSetBackedMapping.RelationshipRestriction - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
 
codedNodeSetCodes_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeRestriction
 
CodedNodeSetDao - Interface in org.lexevs.dao.database.access.codednodeset
The Interface CodedNodeSetDao.
CodedNodeSetFactory - Class in org.LexGrid.LexBIG.Impl
A factory for creating CodedNodeSet objects.
CodedNodeSetFactory() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetFactory
 
CodedNodeSetImpl - Class in org.LexGrid.LexBIG.Impl
Implementation of the CodedNodeSet Interface.
CodedNodeSetImpl() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
This constructor is only here for Apache Axis to work correctly.
CodedNodeSetImpl(String, CodingSchemeVersionOrTag, Boolean, LocalNameList) - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
CodedNodeSetImpl(CodeHolder, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
This is used when I converter a CodedNodeGraph to a CodedNodeSet.
CodedNodeSetImpl.QueryBuilder - Class in org.LexGrid.LexBIG.Impl
A holder for all Restrictions set on this CodedNodeSetImpl that can be converted into a Lucene Query on demand.
CodedNodeSetImplTest - Class in org.LexGrid.LexBIG.Impl
JUnit Tests for the CodedNodeSetImpl
CodedNodeSetImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
CodedNodeSetSerializationTest - Class in org.LexGrid.LexBIG.Impl
 
CodedNodeSetSerializationTest() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
codeExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
CodeHolder() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.CodeHolder
Deprecated.
 
CodeHolder(String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.CodeHolder
Deprecated.
 
CodeHolder - Interface in org.LexGrid.LexBIG.Impl.helpers
The Interface CodeHolder.
codeHolderFactory - Variable in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
CodeHolderFactory - Interface in org.LexGrid.LexBIG.Impl.helpers.lazyloading
A factory for creating CodeHolder objects.
CodeNamespacePair(String, String) - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
Instantiates a new code namespace pair.
codeNamespacePairToConceptReference(GraphQuery.CodeNamespacePair) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
CodePostSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
Code sort which implements the Sort interface.
CodePostSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodePostSort
 
CodeRestriction - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces
Interface for a code restriction on a CodedNodeGraph
CodeRestriction() - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeRestriction
 
codes - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingCode
 
CodeSabPair - Class in org.lexgrid.loader.rrf.staging.model
The Class CodeSabPair.
CodeSabPair() - Constructor for class org.lexgrid.loader.rrf.staging.model.CodeSabPair
 
CodeSet - Class in org.LexGrid.LexBIG.gui.codeSet
Parent class for CodedNodeSets and CodedNodeGraphs.
CodeSet() - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
CodeSet.Operation - Class in org.LexGrid.LexBIG.gui.codeSet
 
CodeSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
ConceptStatus sort which implements the Sort interface.
CodeSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort
 
CodeSort.CodeToReturnConceptCodeSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
 
CodeSort.GNodeConceptCodeSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
 
CodeSort.ResolvedConceptReferenceConceptCodeSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
 
codeSystem - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CODESYSTEM - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CodeSystem - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the Code System restrictions.
CodeSystem(int) - Constructor for class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
codeSystem - Variable in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
CodeSystemContentProvider - Class in org.LexGrid.LexBIG.gui.codeSystemView
Content provider for the Code Systems SWT Table.
CodeSystemContentProvider(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemContentProvider
 
CodeSystemDetails - Class in org.LexGrid.LexBIG.gui
Class for displaying code system details.
CodeSystemDetails(Shell, LB_GUI, CodingScheme, String) - Constructor for class org.LexGrid.LexBIG.gui.CodeSystemDetails
 
CodeSystemLabelProvider - Class in org.LexGrid.LexBIG.gui.codeSystemView
Label provider for the Code System SWT table view.
CodeSystemLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
CodeSystemRestriction - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces
Interface for a code system restriction on a codedNodeGraph operation
CodeSystemRestriction(String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeSystemRestriction
 
codeSystems - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CodeSystemSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
CodeSystem sort which implements the Sort interface.
CodeSystemSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSystemSort
 
codeSystemsToInclude - Variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
codeSystemTextFlag - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CodeSystemUserMetaData - Class in org.LexGrid.LexBIG.gui
 
CodeSystemUserMetaData(Map<String, String>) - Constructor for class org.LexGrid.LexBIG.gui.CodeSystemUserMetaData
 
codeSystemVersion - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CODESYSTEMVERSION - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
codeSystemVersions - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CodeToReturn - Class in org.LexGrid.LexBIG.Impl.helpers
Class to hold the details for a code match.
CodeToReturn() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
CodeToReturn(String, String) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
CodeToReturn(String, String, ConceptReference) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
CodeToReturn(String, String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
CodeToReturn(String, String, String, String, float) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
CodeToReturn(String, String, String, String, float, String, String[]) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
codeToReturn - Variable in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
The code to return.
CodeToReturnConceptCodeSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.CodeToReturnConceptCodeSort
 
CodeToReturnEntityDescritpionSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort.CodeToReturnEntityDescritpionSort
 
CodeToReturnResolver - Interface in org.LexGrid.LexBIG.Impl.helpers
The Interface CodeToReturnResolver.
CodeToReturnTest - Class in org.LexGrid.LexBIG.Impl.helpers
JUnit Tests for the CodeToReturn sorter.
CodeToReturnTest() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.CodeToReturnTest
 
CODING_SCHEME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
CODING_SCHEME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
CODING_SCHEME - Static variable in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
CODING_SCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CODING_SCHEME_DC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
CODING_SCHEME_DC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
CODING_SCHEME_ID_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The CODIN g_ schem e_ i d_ field.
CODING_SCHEME_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CODING_SCHEME_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
CODING_SCHEME_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
CODING_SCHEME_NAME - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
CODING_SCHEME_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
CODING_SCHEME_NAME_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The CODIN g_ schem e_ nam e_ field.
CODING_SCHEME_NAME_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The CODIN g_ schem e_ nam e_ property.
CODING_SCHEME_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
The CODIN g_ schem e_ namespace.
CODING_SCHEME_PROP - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CODING_SCHEME_PROP_MULTI_ATTRIB - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CODING_SCHEME_SUPPORTED_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CODING_SCHEME_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
CODING_SCHEME_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
CODING_SCHEME_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
CODING_SCHEME_URI - Static variable in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
CODING_SCHEME_URI - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
CODING_SCHEME_URI - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
CODING_SCHEME_URI_VERSION_CODE_NAMESPACE_KEY_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
CODING_SCHEME_URI_VERSION_KEY_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The CODIN g_ schem e_ ur i_ versio n_ ke y_ field.
CODING_SCHEME_VERSION_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The CODIN g_ schem e_ i d_ field.
CODING_SCHEME_VERSIONS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CodingScheme - Class in edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
CodingScheme holder for Text loaders.
CodingScheme() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
codingScheme - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.CodeHolder
Deprecated.
 
CodingScheme - Class in org.LexGrid.codingSchemes
A resource that makes assertions about a collection of terminological entities.
CodingScheme() - Constructor for class org.LexGrid.codingSchemes.CodingScheme
 
CodingSchemeAliasHolder - Class in org.lexevs.system.service
The Class CodingSchemeAliasHolder.
CodingSchemeAliasHolder() - Constructor for class org.lexevs.system.service.CodingSchemeAliasHolder
 
CodingSchemeAlreadyLoadedException - Exception in org.lexevs.dao.database.service.exception
The Class CodingSchemeAlreadyLoadedException.
CodingSchemeAlreadyLoadedException(String, String) - Constructor for exception org.lexevs.dao.database.service.exception.CodingSchemeAlreadyLoadedException
Instantiates a new coding scheme already loaded exception.
CodingSchemeBuilder - Class in org.lexgrid.valuesets.helper
 
CodingSchemeBuilder() - Constructor for class org.lexgrid.valuesets.helper.CodingSchemeBuilder
 
CodingSchemeDao - Interface in org.lexevs.dao.database.access.codingscheme
The Interface CodingSchemeDao.
CodingSchemeDescriptor - Class in org.LexGrid.codingSchemes.descriptors
Class CodingSchemeDescriptor.
CodingSchemeDescriptor() - Constructor for class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
 
CodingSchemeEditDialog - Class in org.LexGrid.LexBIG.gui.edit
 
CodingSchemeEditDialog(LB_GUI, String, boolean, String, Shell, CodingScheme, DialogHandler) - Constructor for class org.LexGrid.LexBIG.gui.edit.CodingSchemeEditDialog
 
codingSchemeExists(CodingSchemeRendering[], AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
codingSchemeId - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
codingSchemeId - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
The coding scheme id.
codingSchemeId - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
The coding scheme id.
CodingSchemeIdAwareProcessor - Class in org.lexgrid.loader.processor
The Class CodingSchemeIdAwareProcessor.
CodingSchemeIdAwareProcessor() - Constructor for class org.lexgrid.loader.processor.CodingSchemeIdAwareProcessor
 
CodingSchemeIdHolder<T> - Class in org.lexgrid.loader.wrappers
 
CodingSchemeIdHolder() - Constructor for class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
CodingSchemeIdHolder(CodingSchemeIdSetter, T) - Constructor for class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
CodingSchemeIdMapper - Interface in org.lexevs.dao.database.utility
The Interface CodingSchemeIdMapper.
CodingSchemeIdSetter - Interface in org.lexgrid.loader.data.codingScheme
The Interface CodingSchemeIdSetter.
CodingSchemeInserter - Interface in edu.mayo.informatics.lexgrid.convert.inserter
The Interface CodingSchemeInserter.
CodingSchemeInsertErrorEvent<T extends java.lang.Exception> - Class in org.lexevs.dao.database.service.event.codingscheme
The Class CodingSchemeInsertErrorEvent.
CodingSchemeInsertErrorEvent(CodingScheme, T) - Constructor for class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeInsertErrorEvent
Instantiates a new coding scheme insert error event.
codingSchemeManifest - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
CodingSchemeManifest - Class in org.LexGrid.LexOnt
Class CodingSchemeManifest.
CodingSchemeManifest() - Constructor for class org.LexGrid.LexOnt.CodingSchemeManifest
 
CodingSchemeManifestDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CodingSchemeManifestDescriptor.
CodingSchemeManifestDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
 
CodingSchemeManifestList - Class in org.LexGrid.LexOnt
Class CodingSchemeManifestList.
CodingSchemeManifestList() - Constructor for class org.LexGrid.LexOnt.CodingSchemeManifestList
 
CodingSchemeManifestListDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CodingSchemeManifestListDescriptor.
CodingSchemeManifestListDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
 
CodingSchemeMetaData - Class in org.lexevs.dao.indexer.utility
 
CodingSchemeMetaData(String, String, String, LuceneDirectoryFactory.NamedDirectory) - Constructor for class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
CodingSchemeMetaDataTest - Class in org.lexevs.dao.indexer.utility
 
CodingSchemeMetaDataTest() - Constructor for class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
codingSchemeName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
codingSchemeName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
codingSchemeName - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
codingSchemeName - Variable in class org.lexevs.system.model.LocalCodingScheme
The coding scheme name.
codingSchemeName(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
codingSchemeNameOrId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CodingSchemeParameterException - Exception in org.lexevs.exceptions
The Class CodingSchemeParameterException.
CodingSchemeParameterException(AbsoluteCodingSchemeVersionReference, String) - Constructor for exception org.lexevs.exceptions.CodingSchemeParameterException
Instantiates a new coding scheme parameter exception.
CodingSchemeParameterException(CodingScheme, String) - Constructor for exception org.lexevs.exceptions.CodingSchemeParameterException
Instantiates a new coding scheme parameter exception.
CodingSchemeReference - Class in org.lexevs.system.utility
 
CodingSchemeReference() - Constructor for class org.lexevs.system.utility.CodingSchemeReference
 
CodingSchemeReference - Class in org.LexGrid.LexBIG.Extensions.Generic
A reference to a LexGrid CodingScheme.
CodingSchemeReference() - Constructor for class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
CodingSchemeReference - Class in org.LexGrid.valueSets
A reference to all of the entity codes in a given coding scheme.
CodingSchemeReference() - Constructor for class org.LexGrid.valueSets.CodingSchemeReference
 
CodingSchemeReferenceContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Coding Scheme Reference Contents SWT Table.
CodingSchemeReferenceContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceContentProvider
 
CodingSchemeReferenceDescriptor - Class in org.LexGrid.valueSets.descriptors
Class CodingSchemeReferenceDescriptor.
CodingSchemeReferenceDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
 
CodingSchemeReferenceLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Entry SWT table view.
CodingSchemeReferenceLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
CodingSchemeReferencesStringArrayPickListOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class StringOption.
CodingSchemeReferencesStringArrayPickListOption(String, CodingSchemeRenderingList) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.CodingSchemeReferencesStringArrayPickListOption
Instantiates a new string option.
CodingSchemeReferenceView - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
CodingSchemeReferenceView(LB_VSD_GUI, ValueSetDefinitionDetails, Shell, ValueSetDefinition, DefinitionEntry) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceView
 
CodingSchemeRegisteringListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving codingSchemeRegistering events.
CodingSchemeRegisteringListener() - Constructor for class org.lexevs.dao.database.service.listener.CodingSchemeRegisteringListener
 
CodingSchemeRendering - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Information about a coding scheme as it appears in a particular service.
CodingSchemeRendering() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
 
CodingSchemeRenderingDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class CodingSchemeRenderingDescriptor.
CodingSchemeRenderingDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
 
CodingSchemeRenderingList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class CodingSchemeRenderingList.
CodingSchemeRenderingList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
CodingSchemeRenderingListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class CodingSchemeRenderingListDescriptor.
CodingSchemeRenderingListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
 
CodingSchemes - Class in org.LexGrid.codingSchemes
A collection of one or more coding schemes.
CodingSchemes() - Constructor for class org.LexGrid.codingSchemes.CodingSchemes
 
CodingSchemeSabNameSetter - Interface in org.lexgrid.loader.umls.data.codingscheme
The Interface CodingSchemeSabNameSetter.
CodingSchemesDescriptor - Class in org.LexGrid.codingSchemes.descriptors
Class CodingSchemesDescriptor.
CodingSchemesDescriptor() - Constructor for class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
 
CodingSchemeSelectionMenu - Class in org.LexGrid.LexBIG.admin
Helper class used to display a list of available code systems and return the user selection.
CodingSchemeSelectionMenu() - Constructor for class org.LexGrid.LexBIG.admin.CodingSchemeSelectionMenu
 
CodingSchemeSelectionMenu - Class in org.LexGrid.LexBIG.example
Helper class used to display a list of available code systems and return the user selection.
CodingSchemeSelectionMenu() - Constructor for class org.LexGrid.LexBIG.example.CodingSchemeSelectionMenu
 
CodingSchemeSelectionMenu - Class in org.lexgrid.valuesets.admin
Helper class used to display a list of available code systems and return the user selection.
CodingSchemeSelectionMenu() - Constructor for class org.lexgrid.valuesets.admin.CodingSchemeSelectionMenu
 
CodingSchemeService - Interface in org.lexevs.dao.database.service.codingscheme
The Interface CodingSchemeService.
CodingSchemeSummary - Class in org.LexGrid.LexBIG.DataModel.Core
Abbreviated list of information about a coding scheme.
CodingSchemeSummary() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
 
CodingSchemeSummaryDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class CodingSchemeSummaryDescriptor.
CodingSchemeSummaryDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
 
CodingSchemeSummaryList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class CodingSchemeSummaryList.
CodingSchemeSummaryList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
CodingSchemeSummaryListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class CodingSchemeSummaryListDescriptor.
CodingSchemeSummaryListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
 
codingSchemeTag(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
CodingSchemeTagList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class CodingSchemeTagList.
CodingSchemeTagList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
CodingSchemeTagListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class CodingSchemeTagListDescriptor.
CodingSchemeTagListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
 
codingSchemeToAliasHolder(CodingScheme) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Coding scheme to alias holder.
codingSchemeToRegistryEntry(CodingScheme) - Static method in class org.lexevs.registry.utility.RegistryUtility
Coding scheme to registry entry.
codingSchemeToRegistryEntry(String, String) - Static method in class org.lexevs.registry.utility.RegistryUtility
Coding scheme to registry entry.
CodingSchemeUpdateEvent - Class in org.lexevs.dao.database.service.event.codingscheme
The Class CodingSchemeUpdateEvent.
CodingSchemeUpdateEvent(String, String, CodingScheme, CodingScheme) - Constructor for class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Instantiates a new coding scheme update event.
CodingSchemeUpdateEvent(String) - Constructor for class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
The Constructor.
codingSchemeUri - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
codingSchemeURI(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
CodingSchemeUriVersionBasedEntryId(String, String) - Constructor for class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId
Instantiates a new coding scheme uri version based entry id.
CodingSchemeUriVersionPair - Class in org.lexgrid.loader.wrappers
 
CodingSchemeUriVersionPair(String, String) - Constructor for class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
CodingSchemeUriVersionToUUID - Class in org.lexevs.dao.database.utility
The Class CodingSchemeUriVersionToUUID.
CodingSchemeUriVersionToUUID() - Constructor for class org.lexevs.dao.database.utility.CodingSchemeUriVersionToUUID
 
codingSchemeVersion - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
CodingSchemeVersion - Class in org.LexGrid.versions
A static snapshot of a coding scheme at a point in time.
CodingSchemeVersion() - Constructor for class org.LexGrid.versions.CodingSchemeVersion
 
CodingSchemeVersionDescriptor - Class in org.LexGrid.versions.descriptors
Class CodingSchemeVersionDescriptor.
CodingSchemeVersionDescriptor() - Constructor for class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
 
CodingSchemeVersionList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class CodingSchemeVersionList.
CodingSchemeVersionList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
CodingSchemeVersionListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class CodingSchemeVersionListDescriptor.
CodingSchemeVersionListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
 
CodingSchemeVersionOrTag - Class in org.LexGrid.LexBIG.DataModel.Core
A named coding scheme version or a virtual tag (e.g. latest, production, etc).
CodingSchemeVersionOrTag() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
 
CodingSchemeVersionOrTagDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class CodingSchemeVersionOrTagDescriptor.
CodingSchemeVersionOrTagDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
 
codingSchemeVersionSeparator_ - Static variable in class org.lexevs.system.ResourceManager
Deprecated.
The Constant codingSchemeVersionSeparator_.
CodingSchemeVersionStatus - Enum in org.LexGrid.LexBIG.DataModel.Core.types
This class provides a series of set values for the version status of a given coding scheme.
CodingSchemeVersionStatusDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.types.descriptors
Class CodingSchemeVersionStatusDescriptor.
CodingSchemeVersionStatusDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
 
CodingSchemeWriter - Class in org.lexgrid.loader.writer
 
CodingSchemeWriter() - Constructor for class org.lexgrid.loader.writer.CodingSchemeWriter
 
CodingSchemeWriterTest - Class in org.lexgrid.loader.writer
 
CodingSchemeWriterTest() - Constructor for class org.lexgrid.loader.writer.CodingSchemeWriterTest
 
cOldPattern - Variable in class org.LexGrid.util.file.CopyrightFieldScrubber
 
collectReducedNodes(String, List<VSHierarchyNode>) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
ColumnSortType - Enum in org.lexevs.dao.database.service.codednodegraph.model
The Enum ColumnSortType.
CombinationOptions - Class in edu.mayo.informatics.lexgrid.convert.formats
A place to define options which apply to a specific input/ouput combination.
CombinationOptions() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.CombinationOptions
 
CombiningListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class CombiningListProcessor.
CombiningListProcessor() - Constructor for class org.lexgrid.loader.processor.CombiningListProcessor
 
CombiningProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class CombiningProcessor.
CombiningProcessor() - Constructor for class org.lexgrid.loader.processor.CombiningProcessor
 
COMBKeyGenerator - Class in org.lexevs.dao.database.key
The Class Java5UUIDKeyGenerator.
COMBKeyGenerator() - Constructor for class org.lexevs.dao.database.key.COMBKeyGenerator
 
comboBoxFactory(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
CommandLineMessageDirector - Class in org.lexevs.logging.messaging.impl
An implementation of the LgMessageDirectorIF that routes the messages to the command line.
CommandLineMessageDirector(String, boolean) - Constructor for class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
Construct a command line message director that will also write to a log4j logger of the given name.
CommandLineMessageDirector(String) - Constructor for class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
Construct a command line message director that will also write to a log4j logger of the given name.
CommandLineMessageDirector() - Constructor for class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
Instantiates a new command line message director.
comment - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
Comment - Class in org.LexGrid.concepts
A property that is used as an annotation or other note about the state or usage of the entity.
Comment() - Constructor for class org.LexGrid.concepts.Comment
 
COMMENT_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
CommentDescriptor - Class in org.LexGrid.concepts.descriptors
Class CommentDescriptor.
CommentDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.CommentDescriptor
 
commit() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
CommonBase - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
 
CommonBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
CommonEntityDao - Interface in org.lexevs.dao.index.access.entity
The Interface EntityDao.
CommonIndexLazyLoadableCodeToReturn - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
The Class LazyLoadableCodeToReturn.
CommonIndexLazyLoadableCodeToReturn() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.CommonIndexLazyLoadableCodeToReturn
Instantiates a new lazy loadable code to return.
CommonIndexLazyLoadableCodeToReturn(List<AbsoluteCodingSchemeVersionReference>, ScoreDoc) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.CommonIndexLazyLoadableCodeToReturn
 
CommonIndexLazyLoadableCodeToReturn(List<AbsoluteCodingSchemeVersionReference>, float, int) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.CommonIndexLazyLoadableCodeToReturn
Instantiates a new lazy loadable code to return.
COMP_PROP_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_COMPLEXANNOTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_COMPLEXANNOTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_COMPLEXDEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_COMPLEXDEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_COMPLEXTERM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_COMPLEXTERM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_DEF_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_DEF_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_DEF_REV_DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_DEF_REV_DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_DEF_REV_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_DEF_REV_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_DEF_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_DEF_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_GO_EVI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_GO_EVI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_GO_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_GO_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_GO_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_GO_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_GO_SOURCE_DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_GO_SOURCE_DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_GO_TERM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_GO_TERM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_MAPSTO - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_MAPSTOCOMPLEX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_RELATIONSHIP_TO_TARGET - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TARGET_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TARGET_TERM_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TARGET_TERMINOLOGY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TERM_GROUP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_TERM_GROUP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TERM_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_TERM_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
COMP_PROP_TAG_TERM_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
COMP_PROP_TAG_TERM_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
compact() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
compact() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
 
compare(Property, Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PropertyComparator
 
compare(Property, Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PropertyComparator
 
compare(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationSorter
Deprecated.
 
compare(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentationSorter
Deprecated.
 
compare(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.utility.StringComparator
 
compare(LexEVSTreeItem, LexEVSTreeItem) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem.TextComparator
 
compare(String, String) - Method in class org.LexGrid.LexBIG.gui.codeSet.StringComparator
 
compare(CodeToReturn, CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.CodeToReturnConceptCodeSort
 
compare(GNode, GNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.GNodeConceptCodeSort
 
compare(ResolvedConceptReference, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.ResolvedConceptReferenceConceptCodeSort
 
compare(CodeToReturn, CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort.CodeToReturnEntityDescritpionSort
 
compare(ResolvedConceptReference, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort.ResolvedConceptReferenceEntityDescritpionSort
 
compare(T, T) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
 
compare(Object, Object) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationComparator
Deprecated.
 
compare(Object, Object) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNodeComparator
Deprecated.
 
compare(Mrconso, Mrconso) - Method in class org.lexgrid.loader.rrf.data.property.MrconsoPropertyComparator
 
compare(Presentation, Presentation) - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
 
compareTo(Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
compareTo(Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
compareTo(Object) - Method in class edu.mayo.informatics.resourcereader.core.IF.ResourceType
 
compareTo(VSHierarchyNode) - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
compareTo(LexEVSTreeItem) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
compareTo(BuildTreeForCode.TreeItem) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
compareTo(BuildTreeForMetaCodeBySource.TreeItem) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
compareTo(FindUMLSContextsForCUI.TreeItem) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
compareTo(Object) - Method in class org.LexGrid.LexBIG.example.ScoreTerm.ScoredTerm
 
compileValueSetDefinition(ValueSetDefinition, HashMap<String, String>, String, HashMap<String, ValueSetDefinition>) - Method in class org.lexgrid.valuesets.helper.compiler.AbstractCachingValueSetDefinitionCompilerDecorator
 
compileValueSetDefinition(ValueSetDefinition, HashMap<String, String>, String, HashMap<String, ValueSetDefinition>) - Method in interface org.lexgrid.valuesets.helper.compiler.ValueSetDefinitionCompiler
Compile value set definition.
compileValueSetDefinition(ValueSetDefinition, HashMap<String, String>, String, HashMap<String, ValueSetDefinition>) - Method in class org.lexgrid.valuesets.helper.DefaultCompiler
 
composeName(String, String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
composeName(Name, Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
CompositeGroupComparator<I1,I2> - Interface in org.lexgrid.loader.reader.support
The Interface CompositeGroupComparator.
CompositeGroupItemReader<I1,I2> - Class in org.lexgrid.loader.reader
The Class CompositeGroupItemReader.
CompositeGroupItemReader() - Constructor for class org.lexgrid.loader.reader.CompositeGroupItemReader
 
CompositeReaderChunk<I1,I2> - Class in org.lexgrid.loader.reader.support
The Class CompositeReaderChunk.
CompositeReaderChunk() - Constructor for class org.lexgrid.loader.reader.support.CompositeReaderChunk
 
CompoundSkipPolicy<I> - Class in org.lexgrid.loader.reader.support
Will iterate through a list of Skip Policies.
CompoundSkipPolicy() - Constructor for class org.lexgrid.loader.reader.support.CompoundSkipPolicy
 
computeNextIdentifier(String) - Static method in class org.LexGrid.util.sql.DBUtility
Construct the next identifier to use after the given identifier.
computeTestMethods() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunner
 
ComputeTransitiveExpansionTable - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for removing a terminology from a server.
ComputeTransitiveExpansionTable() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
computeTransitiveTable(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
computeTransitiveTable(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Compute transitive table.
computeTransitivityTable(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
computeTransitivityTable(String, String) - Method in interface org.lexevs.dao.database.operation.transitivity.TransitivityBuilder
 
computeTransitivityTable(String, LgMessageDirectorIF) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
computeTransitivityTable() - Method in class org.LexGrid.util.sql.lgTables.TransitiveClosure
 
CONCATINATED_VALUE_SPLIT_TOKEN - Static variable in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
concept - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CONCEPT - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
Concept - Class in edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
Holder for concepts loaded from Text files.
Concept(String, String, String, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
Concept(String, String, CodingScheme) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
Concept - Class in org.LexGrid.concepts
Deprecated.
Concept() - Constructor for class org.LexGrid.concepts.Concept
Deprecated.
 
Concept - Static variable in class org.lexgrid.exporter.owlrdf.Skos
 
CONCEPT - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
CONCEPT_DC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
CONCEPT_DC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
CONCEPT_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
CONCEPT_DOMAIN - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
CONCEPT_DOMAIN - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
CONCEPT_DOMAIN_DEFAULT_CODING_SCHEME_FORMAL_NAME - Static variable in class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
CONCEPT_DOMAIN_DEFAULT_CODING_SCHEME_LOCAL_NAME - Static variable in class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
CONCEPT_DOMAIN_DEFAULT_CODING_SCHEME_URI - Static variable in class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
CONCEPT_DOMAIN_DEFAULT_CODING_SCHEME_VERSION - Static variable in class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
CONCEPT_DOMAIN_ENTITY_TYPE - Static variable in class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
CONCEPT_HISTORY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CONCEPT_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
CONCEPT_PROPERTY_QUALIFIERS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
conceptCode - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CONCEPTCODE - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptCode - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
conceptCodeExists(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
conceptCodes - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
ConceptCodes - Class in org.LexGrid.LexBIG.DataModel.Collections
Class ConceptCodes.
ConceptCodes() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
ConceptCodesDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class ConceptCodesDescriptor.
ConceptCodesDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
 
conceptDomain(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
ConceptDomainConstants - Class in org.lexgrid.conceptdomain.util
 
ConceptDomainConstants() - Constructor for class org.lexgrid.conceptdomain.util.ConceptDomainConstants
 
ConceptPresentation() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
ConceptPresentationSorter(boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentationSorter
Deprecated.
 
ConceptPresentationSorter() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentationSorter
Deprecated.
 
conceptPrintName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptProperties - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptProperty - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CONCEPTPROPERTY - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptRefCodes_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeRestriction
 
ConceptReference - Class in org.LexGrid.LexBIG.DataModel.Core
A reference to a concept code.
ConceptReference() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.ConceptReference
 
ConceptReferenceDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class ConceptReferenceDescriptor.
ConceptReferenceDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
 
ConceptReferenceList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class ConceptReferenceList.
ConceptReferenceList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
ConceptReferenceListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class ConceptReferenceListDescriptor.
ConceptReferenceListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
 
conceptReferenceListToCodedNodeSet(ConceptReferenceList, ValueSetDefinition, HashMap<String, String>, String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Convert a concept reference list into a coded node set in the context of a particular value set definition
conceptRelationship - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CONCEPTRELATIONSHIP - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptRelationshipFlag - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
conceptRelationships - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
concepts - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
concepts - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
conceptSelected(ResolvedConceptReference) - Method in interface org.LexGrid.LexBIG.gui.plugin.TabbedContent
Notifies the implentor that the concept identified by rcr has been selected in the left-side pane of the UI.
conceptStatus - Variable in class org.LexGrid.LexBIG.gui.restrictions.Status
 
ConceptStatusSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
ConceptStatus sort which implements the Sort interface.
ConceptStatusSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.ConceptStatusSort
 
conceptTextFlag - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
ConceptTreeView - Class in org.LexGrid.LexBIG.gui.displayResults
ConceptTreeView provides a UI to display concepts, in particular, ResolvedConceptReference and the associations between them, in a tree view.
ConceptTreeView(Shell, Composite) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
ConcurrentMetaData - Class in org.lexevs.dao.indexer.utility
A replacement for the MetaData class
ConcurrentMetaDataTest - Class in org.lexevs.dao.indexer.utility
 
ConcurrentMetaDataTest() - Constructor for class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
CONFIG_FILE_NAME - Static variable in class org.lexevs.system.constants.SystemVariables
 
Configure - Class in org.LexGrid.LexBIG.gui.config
This GUI allows you to display and edit all of the options from a LexBIG config file.
Configure(LB_GUI, Properties) - Constructor for class org.LexGrid.LexBIG.gui.config.Configure
 
Configure(LB_VSD_GUI, Properties) - Constructor for class org.LexGrid.LexBIG.gui.config.Configure
 
configureLog4j(String, String) - Static method in class org.lexevs.system.utility.Log4JUtility
Method to read in a log4j config file, modify every property that ends with "File" such that the baseFilePath value is prefixed onto it, and then configure log4j with the results.
configureLog4j(String) - Static method in class org.lexevs.system.utility.Log4JUtility
Configure log4j from a config file.
configureLog4j(Properties) - Static method in class org.lexevs.system.utility.Log4JUtility
Configure log4j from a properties object.
configureLog4j(Properties, String) - Static method in class org.lexevs.system.utility.Log4JUtility
Configure log4j from a properties object.
configureLog4JFromPathSpecifiedInProperties(Properties, String, boolean) - Static method in class org.lexevs.system.utility.Log4JUtility
Configure log4j with the a config file specified by a value in a properties object.
configureLogs() - Method in class org.LexGrid.LexBIG.gui.logging.LogViewer
 
ConfigureTest - Class in org.LexGrid.LexBIG.Impl.helpers
 
ConfigureTest() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ConfigureTest
 
connection_ - Variable in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
CONNECTION_MANAGER - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The CONNECTIO n_ manager.
ConnectionFailure - Exception in edu.mayo.informatics.lexgrid.convert.exceptions
Error to be thrown when a connection can't be made.
ConnectionFailure(String, Exception) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.ConnectionFailure
 
ConnectionFailure(String) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.ConnectionFailure
 
ConnectionHelper - Class in org.LexGrid.util.sql.sqlReconnect
This class is just a hack so that I can get the driver manager to connect to a sql database with a driver that was loaded using a different class loader.
ConnectionHelper() - Constructor for class org.LexGrid.util.sql.sqlReconnect.ConnectionHelper
 
ConnectionHelperIF - Interface in org.LexGrid.util.sql.sqlReconnect
This class is just a hack so that I can get the driver manager to connect to a sql database with a driver that was loaded using a different class loader.
ConnectionPropertiesFactory - Interface in org.lexgrid.loader.properties
A factory for creating ConnectionProperties objects.
connectToDatabase(String, String, String, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
consider - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
Constants - Class in edu.mayo.informatics.lexgrid.convert.utility
Class to hold values used in multiple places in the converter.
Constants() - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
Constants - Class in org.LexGrid.LexBIG.gui
Constants for the LexBIG GUI (like version number, etc).
Constants() - Constructor for class org.LexGrid.LexBIG.gui.Constants
 
constHandler - Variable in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
construct() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
Compute the value to be returned by the get method.
constructKey(ConceptReference) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Construct a (hopefully) unique key from a concept reference
Constructors - Class in org.LexGrid.LexBIG.Utility
Class to ease creating common objects.
Constructors() - Constructor for class org.LexGrid.LexBIG.Utility.Constructors
 
constructVersionPairsFromCodingSchemes(Object...) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
consumeAllTextFlag - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
CONTACT_INFO - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
CONTAINER_NAME - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
CONTAINER_NAME_RELATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
CONTAINER_NAME_RELATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
containerName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Contains MRSATCUI from appropriate mappings properties set in MRSAT.
containerNameOrContainerDC - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
contains(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.OptionHolder
 
contains(List<T>, T, DaoUtility.Equality<T>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
contains(CodeToReturn) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Contains.
contains(CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
CONTAINS_INDEX - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
containsCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
containsCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
containsCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.registry.service.Registry
Contains coding scheme entry.
containsCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
 
containsCodingSchemeResource(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
containsCodingSchemeResource(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
containsCodingSchemeResource(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
containsCodingSchemeResource(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Contains coding scheme resource.
containsIgnoreCase(Collection<String>, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
containsNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
containsNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
containsNonCodingSchemeEntry(String) - Method in interface org.lexevs.registry.service.Registry
Contains non coding scheme entry.
containsNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.XmlRegistry
 
containsNonCodingSchemeResource(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
containsNonCodingSchemeResource(String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
containsNonCodingSchemeResource(String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
containsNonCodingSchemeResource(String) - Method in interface org.lexevs.system.service.SystemResourceService
Contains non coding scheme resource.
containsNulls(Object...) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
containsPickListDefinitionResource(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
containsPickListDefinitionResource(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
containsPickListDefinitionResource(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
containsPickListDefinitionResource(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Contains pick list definition resource.
ContainsSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class ContainsSearch.
ContainsSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.ContainsSearch
 
containsSubsetName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
containsValueSetDefinitionResource(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
containsValueSetDefinitionResource(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
containsValueSetDefinitionResource(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
containsValueSetDefinitionResource(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Contains value set definition resource.
content - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
contentscrubberTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.ContentScrubberTestIT
 
ContentScrubberTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
ContentScrubberTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.ContentScrubberTestIT
 
contextList_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
ConvenienceMethods - Class in org.LexGrid.LexBIG.Utility
Convenience methods that have been implemented against the LexBIG API.
ConvenienceMethods() - Constructor for class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Serialization constructor for remote interface only
ConvenienceMethods(LexBIGService) - Constructor for class org.LexGrid.LexBIG.Utility.ConvenienceMethods
 
convertClaMLToEMF(URI, ClaMLConfig, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaML2LG
 
convertConceptReferenceToCodeHolder(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
convertLBException(LBException) - Method in interface org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorAdapter.IteratorExceptionHandler
Convert lb exception.
convertResourceToString(Resource) - Static method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
Convert resource to string.
convertStringToDate(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSHistoryFileToSQL
This method converts a date in string format to java.sql.Date Format.
convertToNMTokenString(String) - Static method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
copyAndEditRegistry(File, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.ExportUtility
 
COPYRIGHT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
copyright - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
COPYRIGHT - Static variable in class org.LexGrid.util.file.CopyrightScrubber
 
COPYRIGHT_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The COPYRIGH t_ property.
CopyrightFieldScrubber - Class in org.LexGrid.util.file
 
CopyrightFieldScrubber() - Constructor for class org.LexGrid.util.file.CopyrightFieldScrubber
 
CopyrightScrubber - Class in org.LexGrid.util.file
 
CopyrightScrubber() - Constructor for class org.LexGrid.util.file.CopyrightScrubber
 
count_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
count_ - Variable in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
CountBasedLexGridSchemaCheck - Class in org.lexevs.dao.database.setup.schemacheck
The Class CountBasedLexGridSchemaCheck.
CountBasedLexGridSchemaCheck() - Constructor for class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
Instantiates a new count based lex grid schema check.
CountBasedLexGridSchemaCheck(DataSource, SystemVariables) - Constructor for class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
Instantiates a new count based lex grid schema check.
CountConceptReference - Class in org.lexevs.dao.database.service.codednodegraph.model
This class is used when I want to create a conceptReference that needs to also hold its child count.
CountConceptReference() - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.CountConceptReference
Instantiates a new count concept reference.
CountConceptReference(ConceptReference, int) - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.CountConceptReference
Instantiates a new count concept reference.
CountConceptReference(String, String, String, int) - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.CountConceptReference
Instantiates a new count concept reference.
countOfCodeSystemVersions - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
countOfCodeSystemVersionsWithNoConcepts - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
countOfMultipleCodeConcepts - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
countQuery(SQLInterface, ArrayList<Operation>, boolean, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
This returns a list of CountConceptReferences that hold the count of the concepts at the next/prev level depending the value of the forward flag
CREATE_CONCEPT_FOR_OBJECT_PROP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
CREATE_CONCEPT_FOR_OBJECT_PROP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
createAbsoluteCodingSchemeVersionReference(String, String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Creates the absolute coding scheme version reference.
createAbsoluteCodingSchemeVersionReference(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create an AbsoluteCodingSchemeReference
createAbsoluteCodingSchemeVersionReference(CodingSchemeSummary) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createAbsoluteCodingSchemeVersionReference(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create an AbsoluteCodingSchemeReference
createAbsoluteCodingSchemeVersionReference(CodingSchemeSummary) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create an AbsoluteCodingSchemeReference
createAllTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createAllTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createAllTables() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
Creates the Tables
createArrayOf(String, Object[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createAssociation() - Static method in class org.LexGrid.custom.concepts.EntityFactory
Create a default Concept with its Entity Type set to Concept
createAssociationMapping(EntryState, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, AssociationSource[], String, String, Date, AssociationQualification[], Revision, boolean) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createAssociationMapping(EntryState, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, AssociationSource[], String, String, Date, AssociationQualification[], Revision, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creating a mapping to persist to an existing set of maps in a specified coding scheme If no mapping set exists -- start a new mapping set
createAssociationPredicate(String, AssociationSource[]) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createAssociationPredicate(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createAssociationPredicate(String, AssociationSource[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Populates the predicate only -- does not persist.
createAssociationPredicate(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creates and persists an association predicate (association type).
createAssociationQualification(String, String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createAssociationQualification(RDFProperty, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createAssociationQualification(String, String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createAssociationQualifier(QualifierResolver<T>, T) - Static method in class org.lexgrid.loader.data.DataUtils
 
createAssociationSource(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createAssociationSource(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createAssociationSource(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String, String, AssociationTarget[]) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createAssociationSource(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String, String, AssociationTarget[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creates and persists an Association source and target set in a given terminology.
createAssociationTarget(MrMap, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
createAssociationTarget(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createAssociationTarget(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createAssociationTarget(EntryState, Versionable, String, Boolean, Boolean, List<String>, List<AssociationQualification>, AbsoluteCodingSchemeVersionReference, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createAssociationTarget(EntryState, Versionable, String, Boolean, Boolean, List<String>, List<AssociationQualification>, AbsoluteCodingSchemeVersionReference, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creates and returns an AssocitionTarget Object Must be created with a source and persisted as a revision Used as a method for creating targets when creating the source..
CreateAssociationTargetTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
CreateAssociationTargetTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateAssociationTargetTest
 
createAssociationTextData(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createAssociationTextData(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createBlob() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createCache() - Static method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.AssociationEntityCacheFactory
 
createCache() - Static method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.AssociationSourceCacheFactory
 
createCachingMessageDirectorIF() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
createChooseFileDialog(Group, String, String) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
createClob() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createCodedNodeGraph() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
createCodedNodeSet() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
createCodedNodeSet(String[], String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a CodedNodeSet from a set of concept codes from a coding scheme.
createCodeNodeSet(String[], String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Create a CodedNodeSet from a set of concept codes in a coding scheme.
createCodeNodeSet(String[], String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
createCodingSchemeHistoryTables(String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createCodingSchemeHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createCodingSchemeHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createCodingSchemeHistoryTables(String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createCodingSchemeIdSetter(String, String) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
createCodingSchemeTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createCodingSchemeTables(String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createCodingSchemeTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createCodingSchemeTables(String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createCodingSchemeUriVersionCodeNamespaceKey(String, String, String, String) - Static method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
createCodingSchemeUriVersionKey(String, String) - Static method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Creates the coding scheme uri version key.
createCodingSchemeVersionOrTag(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createCodingSchemeVersionOrTagFromTag(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createCodingSchemeVersionOrTagFromVersion(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createCodingSchemeVersionsTable() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createComment(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createComment(String, String, String, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createComment(String, String, String, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createCommonTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createCommonTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createConceptHistoryTable() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createConceptReference(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReference from a code / codesystem combination.
createConceptReference(String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReference from a code / namespace / codesystem combination.
createConceptReference(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a ConceptReference from a code / codesystem combination.
createConceptReferenceList(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReferenceList from a single concept code.
createConceptReferenceList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a conceptReferenceList from multiple codes.
createConceptReferenceList(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReferenceList from a single concept / codesystem combination.
createConceptReferenceList(String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReferenceList from a single concept / namespace/ codesystem combination.
createConceptReferenceList(String[], String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReferenceList from a set of codes.
createConceptReferenceList(String[], String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a ConceptReferenceList from a set of codes.
createConceptReferenceList(String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a ConceptReferenceList from a single concept code.
createConceptReferenceList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a conceptReferenceList from multiple codes.
createConceptReferenceList(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a ConceptReferenceList from a single concept / codesystem combination.
createConceptReferenceList(String[], String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a ConceptReferenceList from a set of codes.
created_by - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
createDatabase(String, String, String, String, String, boolean) - Static method in class org.LexGrid.util.sql.DBUtility
 
createDataFieldMaxValueIncrementer() - Method in class org.lexevs.dao.database.key.incrementer.AbstractKeyIncrementer
Creates the data field max value incrementer.
createDataFieldMaxValueIncrementer() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
 
createDataFieldMaxValueIncrementer() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
createDataFieldMaxValueIncrementer() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
 
createDefaultInserter() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
createDefaultInserter(CodingScheme) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
createDefaultMappingCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createDefaultMappingsEntryState(String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createDefaultMappingsEntryState(String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creates and returns an entry state with some preset meta data.
createDefaultRelationsContainer(String, String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createDefaultTableConstraints() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Inserts table constraints
createDefaultTableIndexes() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createDefaultTables() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Initializes, creates, and indexes all tables
createDefaultTables(boolean) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Initializes and creates all tables, optionally indexing
createDefinition(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createDefinition(String, String, String, Boolean, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createDefinition(String, String, String, Boolean, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createDifferentBaseName(String, List<String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createEntityDescription(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create an EntityDescription object.
createEntryStateIfAbsent(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
createEntryStateIfAbsent(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
createIndex() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
createIndex(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
Creates the index.
createIndex(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
createIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
createIndex(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
createIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
createIndex(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
createIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
createIndexDirectory(String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
createIndexForExternalValueSets() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
createIndexReader(Directory) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
createIndexReader(List<LuceneDirectoryFactory.NamedDirectory>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
createIndexSearcher(IndexReader) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
createIndexWriter(LuceneDirectoryFactory.NamedDirectory) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
createIndexWriter(LuceneDirectoryFactory.NamedDirectory) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
createKey(List<AbsoluteCodingSchemeVersionReference>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
createKey(String, String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
createKey(AbsoluteCodingSchemeVersionReference) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
createList(Class<T>, T...) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Creates the list.
createListenerId() - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
Creates the listener id.
createLocalNameList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a LocalNameList out of a set of Strings.
createLocalNameList(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a LocalNameList from a single entry.
createLocalNameList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a LocalNameList out of a set of Strings.
createLocalNameList(String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a LocalNameList from a single entry.
createLuceneIndexTemplate(String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
createMappingScheme(CodingScheme, AssociationSource[], String, String, String, String, String, String, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createMappingScheme(CodingScheme, AssociationSource[], String, String, String, String, String, String, String, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Allows user to control every detail of the creation of a new mapping coding scheme.
createMappingWithDefaultValues(AssociationSource[], String, String, String, String, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createMappingWithDefaultValues(AssociationSource[], String, String, String, String, String, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Create a new mapping coding scheme with many coding scheme meta data values preset.
createMetaDataTable() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createMinimalSchemeForRevision(CodingScheme, String, String, Entity, AssociationEntity) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createMrMapScheme(Relations, String, String, String, String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
CreateMrMapSchemeTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
CreateMrMapSchemeTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateMrMapSchemeTest
 
createNameAndValue(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a NameAndValue from a name / val combination.
createNameAndValue(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a NameAndValue from a name / value combination.
createNameAndValueList(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a NameAndValueList from a single name.
createNameAndValueList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a NameAndValueList from multiple names.
createNameAndValueList(String[], String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a NameAndValueList from a set of names.
createNameAndValueList(String, String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a NameAndValueList from a name and a value pair.
createNameAndValueList(String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a NameAndValueList from a single concept name.
createNameAndValueList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a NameAndValueList from multiple names.
createNameAndValueList(String[], String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a NameAndValueList from multiple names / value combination.
createNameAndValueList(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a NameAndValue from a name / value combination.
createNCIHistoryTable() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createNciHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createNciHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createNClob() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
CreateNewAssociationDataTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
CreateNewAssociationDataTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateNewAssociationDataTest
 
createNewAssociationSourceWithTarget(MrMap, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
CreateNewAssociationSourceWithTargetTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
CreateNewAssociationSourceWithTargetTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateNewAssociationSourceWithTargetTest
 
createNewTablesForLoad() - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
createNewTablesForLoad() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
createNewTablesForLoad() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
createNewTablesForLoad() - Method in interface org.lexevs.system.service.SystemResourceService
Creates the new tables for load.
createNonTypedList(T...) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
createParentDocument(String, String, String, String, String, Entity, String) - Method in class org.lexevs.dao.index.indexer.AssertedValueSetEntityIndexer
 
createParentDocument(String, String, String, String, String, EntityDescription, Boolean, Boolean, Boolean, String[], String, String, Boolean) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Adds the entity boundry document.
createPreferenceLoader(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderFactory
 
createPresentation(String, String, String, boolean) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createPresentation(String, String, String, Boolean, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createPresentation(String, String, String, Boolean, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createProductionTag() - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a "PRODUCTION" tag
createProductionTag() - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Create a "PRODUCTION" tag
createProperty(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createProperty(String, String, String, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createProperty(String, String, String, SupportedMappings, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createPropertyQualifier(ClaMLConfig, UsageKind) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLUtils
Creates the property qualifier.
createPropertyQualifier(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createPropertyQualifier(String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createPropertyQualifier(String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createPropertyQualifier(PropertyQualifierResolver<T>, T) - Static method in class org.lexgrid.loader.data.DataUtils
 
createPropertyQualifier(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createRandomIdentifier() - Method in class org.lexevs.dao.database.access.AbstractBaseDao
 
createReader(IndexReader[]) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
createRelationsContainer(EntryState, CodingScheme, String, Date, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, boolean, String, Properties) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createRelationsContainer(EntryState, CodingScheme, String, Date, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, boolean, String, Properties) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Creates and returns an entry state with mapping related data members populated.
createSequence(String) - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Creates the sequence.
createSingleSourceTargetPair(String, boolean, String, String, String, String, String, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createSMQProperty(String, MedDRARecord_smq_content) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
createSortOption(String, Boolean) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createSortOption(String, Boolean) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
 
createSortOptionList(String[], Boolean[]) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createSortOptionList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
 
createSortOptionList(String[], Boolean[]) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
 
createSortOptionList(String[]) - Static method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
 
createSource(String, String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createSource(String, String, String, SupportedMappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createSource(SourceResolver<T>, T) - Static method in class org.lexgrid.loader.data.DataUtils
 
createSQLXML() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createStagingDatabase(Resource) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
Creates the staging database.
createStatement() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createStatement(int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createStatement(int, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createStruct(String, Object[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
createSubcontext(String, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
createSubcontext(Name, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
createSubcontext(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
createSubcontext(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
createSuffixForSourceDefinedResolvedValueSet(String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createSupportedCodingScheme(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createSupportedConceptDomain(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createSupportedNamespace(String, String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createSupportedSource(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createSupportedStatus(String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
createSynonym(String, Vector<String>) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
createSystemReleaseTables() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createTable(DbSchema, String, CodingSchemeVersionOrTag, String, String...) - Method in class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
Creates the table.
createTable(DbSchema, String, CodingSchemeVersionOrTag, String, String...) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
Creates the table.
createTableConstraints() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
Creates the constraints on the tables
createTargetData(MrMap) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
createText(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
createText(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createText(String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Creates the text.
createText(String, String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Creates the text.
createText(String) - Static method in class org.LexGrid.LexBIG.Utility.Constructors
Create a Text object.
createTripleIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
createTripleIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingTripleIterator
 
createTripleIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleIterator
 
createUniqueId() - Method in class org.lexevs.dao.database.access.AbstractBaseDao
 
createUniqueKeyForSource(String, String) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Generate a unique key for a Source object.
createUniqueKeyForSource(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Generate a unique key for a Source object.
createUri(String, String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
createURIFromString(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGMain
 
CreateUtils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
CreateUtils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.CreateUtils
 
CreateUtils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
 
CreateUtils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.CreateUtils
 
createValueSetHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createValueSetHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createValueSetsTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
createValueSetsTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
createVersionsTable() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
createWeight(IndexSearcher, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
creation_date - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
CryptoUtility - Class in org.lexevs.system.utility
The Class CryptoUtility.
CS_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
CS_NAME - Static variable in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
CsmfAssociationDefinition - Class in org.LexGrid.LexOnt
Class CsmfAssociationDefinition.
CsmfAssociationDefinition() - Constructor for class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
CsmfAssociationDefinitionDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfAssociationDefinitionDescriptor.
CsmfAssociationDefinitionDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
 
CsmfCodingSchemeName - Class in org.LexGrid.LexOnt
A name identifier based on lgBuiltin:localId.
CsmfCodingSchemeName() - Constructor for class org.LexGrid.LexOnt.CsmfCodingSchemeName
 
CsmfCodingSchemeName(String) - Constructor for class org.LexGrid.LexOnt.CsmfCodingSchemeName
 
CsmfCodingSchemeNameDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfCodingSchemeNameDescriptor.
CsmfCodingSchemeNameDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
 
CsmfCodingSchemeURI - Class in org.LexGrid.LexOnt
A name identifier based on lgCommon:registeredName.
CsmfCodingSchemeURI() - Constructor for class org.LexGrid.LexOnt.CsmfCodingSchemeURI
 
CsmfCodingSchemeURI(String) - Constructor for class org.LexGrid.LexOnt.CsmfCodingSchemeURI
 
CsmfCodingSchemeURIDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfCodingSchemeURIDescriptor.
CsmfCodingSchemeURIDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
 
CsmfDefaultLanguage - Class in org.LexGrid.LexOnt
Based on lgCommon:defaultLanguage.
CsmfDefaultLanguage() - Constructor for class org.LexGrid.LexOnt.CsmfDefaultLanguage
 
CsmfDefaultLanguage(String) - Constructor for class org.LexGrid.LexOnt.CsmfDefaultLanguage
 
CsmfDefaultLanguageDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfDefaultLanguageDescriptor.
CsmfDefaultLanguageDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
 
CsmfEntityDescription - Class in org.LexGrid.LexOnt
Based on lgCommon:entityDescription.
CsmfEntityDescription() - Constructor for class org.LexGrid.LexOnt.CsmfEntityDescription
 
CsmfEntityDescriptionDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfEntityDescriptionDescriptor.
CsmfEntityDescriptionDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
 
CsmfFormalName - Class in org.LexGrid.LexOnt
A name identifier based on lgBuiltin:tsCaseIgnoreIA5String.
CsmfFormalName() - Constructor for class org.LexGrid.LexOnt.CsmfFormalName
 
CsmfFormalName(String) - Constructor for class org.LexGrid.LexOnt.CsmfFormalName
 
CsmfFormalNameDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfFormalNameDescriptor.
CsmfFormalNameDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
 
CsmfLocalName - Class in org.LexGrid.LexOnt
A name identifier based on lgBuiltin:tsCaseIgnoreIA5String.
CsmfLocalName() - Constructor for class org.LexGrid.LexOnt.CsmfLocalName
 
CsmfLocalName(String) - Constructor for class org.LexGrid.LexOnt.CsmfLocalName
 
CsmfLocalNameDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfLocalNameDescriptor.
CsmfLocalNameDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
 
CsmfMappings - Class in org.LexGrid.LexOnt
Based on lgCS:mappings.
CsmfMappings() - Constructor for class org.LexGrid.LexOnt.CsmfMappings
 
CsmfMappingsDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfMappingsDescriptor.
CsmfMappingsDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
 
CsmfSource - Class in org.LexGrid.LexOnt
Based on lgCommon:source.
CsmfSource() - Constructor for class org.LexGrid.LexOnt.CsmfSource
 
CsmfSource(String) - Constructor for class org.LexGrid.LexOnt.CsmfSource
 
CsmfSourceDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfSourceDescriptor.
CsmfSourceDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
 
CsmfText - Class in org.LexGrid.LexOnt
Based on lgCommon:text.
CsmfText() - Constructor for class org.LexGrid.LexOnt.CsmfText
 
CsmfTextDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfTextDescriptor.
CsmfTextDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
 
CsmfVersion - Class in org.LexGrid.LexOnt
Based on lgCommon:version.
CsmfVersion() - Constructor for class org.LexGrid.LexOnt.CsmfVersion
 
CsmfVersion(String) - Constructor for class org.LexGrid.LexOnt.CsmfVersion
 
CsmfVersionDescriptor - Class in org.LexGrid.LexOnt.descriptors
Class CsmfVersionDescriptor.
CsmfVersionDescriptor() - Constructor for class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
 
csNamespaceToName_ - Static variable in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
The cs namespace to name_.
csNamespaceToName_ - Static variable in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
csr - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
css - Variable in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
csUID - Variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
csvSupportedLanguageFlag - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
csvSupportedLanguages - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
cui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
cui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
curID - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
curRange - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
CURRENT_LEXGRID_SCHEMA_DESCRIPTION - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
The Constant CURRENT_LEXGRID_SCHEMA_DESCRIPTION.
CURRENT_LEXGRID_SCHEMA_VERSION - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
The Constant CURRENT_LEXGRID_SCHEMA_VERSION.
CurrentPersistenceSchemeVersionFactory - Class in org.lexevs.dao.database.scheme
A factory for creating CurrentPersistenceSchemeVersion objects.
CurrentPersistenceSchemeVersionFactory() - Constructor for class org.lexevs.dao.database.scheme.CurrentPersistenceSchemeVersionFactory
 
currentVersion - Variable in class org.lexevs.dao.database.access.DaoManager
 
CUSTOM - Static variable in class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
CustomStringWriter - Class in org.LexGrid.LexBIG.gui.logging
A StringWriter implementation that writes to a SWT StyledText Composite.
CustomStringWriter(StyledText) - Constructor for class org.LexGrid.LexBIG.gui.logging.CustomStringWriter
 
cvf - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
CVF_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
CvfAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
CvfAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.CvfAssocQualResolver
 
CycleDetectingCallback - Interface in org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
The Interface CycleDetectingCallback.
CyclingCharDbPrefixGenerator - Class in org.lexevs.dao.database.prefix
The Class CyclingCharDbPrefixGenerator.
CyclingCharDbPrefixGenerator() - Constructor for class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
CyclingCharDbPrefixGeneratorTest - Class in org.lexevs.dao.database.prefix
The Class CyclingCharDbPrefixGeneratorTest.
CyclingCharDbPrefixGeneratorTest() - Constructor for class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
 

D

DaoCallbackService - Interface in org.lexevs.dao.database.service.daocallback
The Interface DatabaseService.
DaoCallbackService.DaoCallback<T> - Interface in org.lexevs.dao.database.service.daocallback
The Interface DaoCallback.
DaoFactory<T extends LexGridSchemaVersionAwareDao> - Class in org.lexevs.dao.database.access.factory
A factory for creating Dao objects.
DaoFactory() - Constructor for class org.lexevs.dao.database.access.factory.DaoFactory
 
DaoManager - Class in org.lexevs.dao.database.access
The Class DaoManager.
DaoManager() - Constructor for class org.lexevs.dao.database.access.DaoManager
 
DaoManagerDaoCallbackService - Class in org.lexevs.dao.database.service.daocallback
The Class DaoManagerDaoCallbackService.
DaoManagerDaoCallbackService() - Constructor for class org.lexevs.dao.database.service.daocallback.DaoManagerDaoCallbackService
 
DaoUtility - Class in org.lexevs.dao.database.utility
The Class DaoUtility.
DaoUtility() - Constructor for class org.lexevs.dao.database.utility.DaoUtility
 
DaoUtility.Equality<T> - Interface in org.lexevs.dao.database.utility
 
DaoUtility.EqualsEquality<T> - Class in org.lexevs.dao.database.utility
 
DaoUtility.SortContainer - Class in org.lexevs.dao.database.utility
 
DATA_TYPE_ENTITY_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
Database - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
Database() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.Database
 
DatabaseConstants - Class in org.lexevs.dao.database.constants
The Class PersistenceLayerConstants.
DatabaseConstants() - Constructor for class org.lexevs.dao.database.constants.DatabaseConstants
 
DatabaseEntityRecord - Interface in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
DatabaseError - Interface in org.lexevs.dao.database.service.error
The Interface DatabaseError.
DatabaseErrorIdentifier - Annotation Type in org.lexevs.dao.database.service.error
The Interface DatabaseErrorIdentifier.
DatabaseMapRecord - Interface in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
DatabaseRecord - Interface in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
DatabaseRegistry - Class in org.lexevs.registry.service
The Class DatabaseRegistry.
DatabaseRegistry() - Constructor for class org.lexevs.registry.service.DatabaseRegistry
 
DatabaseRegistryTest - Class in org.lexevs.registry.service
The Class DatabaseRegistryTest.
DatabaseRegistryTest() - Constructor for class org.lexevs.registry.service.DatabaseRegistryTest
 
DatabaseRegistryTest.TestingRegistryXmlToDatabaseTransfer - Class in org.lexevs.registry.service
 
DatabaseServiceEntityKeyResolver - Class in org.lexgrid.loader.database.key
 
DatabaseServiceEntityKeyResolver() - Constructor for class org.lexgrid.loader.database.key.DatabaseServiceEntityKeyResolver
 
DatabaseServiceEventListener - Interface in org.lexevs.dao.database.service.event
The listener interface for receiving databaseServiceEvent events.
DatabaseServiceEventSupport - Class in org.lexevs.dao.database.service.event
The Class DatabaseServiceEventSupport.
DatabaseServiceEventSupport() - Constructor for class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
 
DatabaseServiceManager - Class in org.lexevs.dao.database.service
The Class DatabaseServiceManager.
DatabaseServiceManager() - Constructor for class org.lexevs.dao.database.service.DatabaseServiceManager
 
databaseServiceManager - Variable in class org.lexgrid.loader.database.key.DatabaseServiceEntityKeyResolver
 
DatabaseServiceManagerTest - Class in org.lexevs.dao.database.service
The Class DatabaseServiceManagerTest.
DatabaseServiceManagerTest() - Constructor for class org.lexevs.dao.database.service.DatabaseServiceManagerTest
 
DatabaseType - Enum in org.lexevs.dao.database.type
The Enum DatabaseType.
DatabaseTypeFactory - Class in org.lexevs.dao.database.type
A factory for creating DatabaseType objects.
DatabaseTypeFactory() - Constructor for class org.lexevs.dao.database.type.DatabaseTypeFactory
 
DatabaseUtility - Interface in org.lexevs.dao.database.utility
General Database utility methods.
DatabaseValidationQueryFactory - Class in org.lexevs.dao.database.utility
A factory for creating DatabaseDialect objects.
DatabaseValidationQueryFactory() - Constructor for class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
 
DataLoadTestBase - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
DataLoadTestBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
 
DataLoadTestBase - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
The Class DataLoadTestBase.
DataLoadTestBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
 
DataPartitioner<I> - Interface in org.lexgrid.loader.rrf.partition
The Interface DataPartitioner.
DataSourceFactory - Class in org.lexevs.tree.dao
Deprecated.
DataSourceFactory() - Constructor for class org.lexevs.tree.dao.DataSourceFactory
Deprecated.
 
DataSourceFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
A factory for creating DataSource objects.
DataSourceFactory() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.DataSourceFactory
 
DATATYPE_BOOLEAN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DATATYPE_BOOLEAN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DATATYPE_BOOLEAN_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DATATYPE_BOOLEAN_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DATATYPE_PROP_SWITCH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DATATYPE_PROP_SWITCH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DATATYPE_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DATATYPE_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DATATYPE_STRING_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DATATYPE_STRING_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DataUtils - Class in org.lexgrid.loader.data
The Class DataUtils.
DataUtils() - Constructor for class org.lexgrid.loader.data.DataUtils
 
DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
DATE - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
DATE_FORMAT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
dateFormat - Static variable in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
The date format.
DATEFORMATS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DateTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
 
DateTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.DateTypeHandler
 
DBEntry() - Constructor for class org.lexevs.registry.service.XmlRegistry.DBEntry
 
dbName - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The db name.
dbName - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The db name.
dbName - Variable in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
The db name.
dbs - Variable in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
dbURL - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The db url.
dbURL - Variable in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
The db url.
DBUtility - Class in org.LexGrid.util.sql
This class holds many utility type methods for common DB related tasks - getting booleans out of a SQL server, escaping things for LDAP, etc.
DBUtility() - Constructor for class org.LexGrid.util.sql.DBUtility
 
dbXrefs - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
DC_ASSOCIATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DC_ASSOCIATIONS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
DC_ROLES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
DC_ROLES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
deactivate(XmlRegistry.DBEntry) - Method in class org.lexevs.registry.service.XmlRegistry
Deactivate.
deactivate(AbsoluteCodingSchemeVersionReference, Date) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Deactivate.
deactivateCodingSchemeVersion(AbsoluteCodingSchemeVersionReference, Date) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
deactivateCodingSchemeVersion(AbsoluteCodingSchemeVersionReference, Date) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Mark a coding scheme as inactive.
DeactivateScheme - Class in org.LexGrid.LexBIG.admin
Deactivates a coding scheme based on unique URN and version.
DeactivateScheme() - Constructor for class org.LexGrid.LexBIG.admin.DeactivateScheme
 
deactiveDate - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The deactive date.
debug(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Take a debug message.
debug(String) - Method in class org.lexevs.logging.Logger
 
debug(String, Throwable) - Method in class org.lexevs.logging.Logger
Debug.
debug(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
debug(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
debug(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
debug(String) - Method in class org.lexevs.logging.SimpleLogger
 
debug(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
debug(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
debug(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Take a debug message.
debugEnableOverride() - Static method in class org.lexevs.system.constants.SystemVariables
 
debugEnableOverrideRemove() - Static method in class org.lexevs.system.constants.SystemVariables
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
declareAllowedOptions(OptionHolder) - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
decorateNext(T) - Method in class org.lexevs.paging.AbstractPageableIterator
Decorate next.
decorateNext(AbstractPageableIterator<T>, T) - Method in class org.lexevs.paging.AbstractPageableIterator.NextDecorator
Decorate next.
decorateNext(AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
decorateQuery(Query) - Method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
 
decreaseSpace() - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
decreaseSpace() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
decrypt(String) - Static method in class org.lexevs.system.utility.CryptoUtility
Decrypts cipher text using the shared passphrase.
deepClone(T) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
deepCloneProperty(T) - Static method in class org.lexgrid.loader.data.DataUtils
 
deepCopy(T) - Static method in class org.lexgrid.loader.data.DataUtils
Makes a deep copy of an Object -- assumes the Object to be copied has a Constructor that accepts a String Example: String stringCopy = new String(String originalString);.
DEFAULT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
DEFAULT_BASE_FOLDER - Static variable in class org.LexGrid.LexBIG.gui.plugin.PluginRetriever
 
DEFAULT_CODINGSCHEME_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_CODINGSCHEME_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DEFAULT_CODINGSCHEME_TAG - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_CODINGSCHEME_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
DEFAULT_CODINGSCHEME_URI - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_CODINGSCHEME_URI - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DEFAULT_COPYRIGHT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
DEFAULT_COPYRIGHT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_DO_PUBLISH_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_DO_PUBLISH_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DEFAULT_DO_PUBLISH_VALUE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_DO_PUBLISH_VALUE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DEFAULT_ENTITY_DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_FORMAL_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_LANG - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_LANGUAGE - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
DEFAULT_LANGUAGE_EN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
DEFAULT_LANGUAGE_EN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
DEFAULT_LANGUAGE_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The DEFAUL t_ languag e_ property.
DEFAULT_MAPPING_NAME - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
DEFAULT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_NS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
DEFAULT_PREFIX_PLACEHOLDER - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
The Constant PREFIX_PLACEHOLDER.
DEFAULT_ROOT_NODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
DEFAULT_ROOT_NODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
DEFAULT_ROOT_NODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_SINGLE_INDEX_NAME - Static variable in class org.lexevs.dao.index.factory.IndexLocationFactory
 
DEFAULT_SOURCE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFAULT_SOURCE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DEFAULT_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
DEFAULT_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
DEFAULT_VS_HIERARCHY_RELATION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DefaultCodeHolder - Class in org.LexGrid.LexBIG.Impl.helpers
Class to hold unique concepts per code system that should be returned as a result of a query.
DefaultCodeHolder(List<CodeToReturn>) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
DefaultCodeHolder() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
DefaultCodeToReturnResolver - Class in org.LexGrid.LexBIG.Impl.helpers
The Class DefaultCodeToReturnResolver.
DefaultCodeToReturnResolver() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeToReturnResolver
 
DefaultCompiler - Class in org.lexgrid.valuesets.helper
 
DefaultCompiler(VSDServiceHelper) - Constructor for class org.lexgrid.valuesets.helper.DefaultCompiler
 
DefaultDatabaseError - Class in org.lexevs.dao.database.service.error
The Class DefaultDatabaseError.
DefaultDatabaseError(String, Object, Exception) - Constructor for class org.lexevs.dao.database.service.error.DefaultDatabaseError
Instantiates a new default database error.
DefaultDatabaseError(String, Object, String, Exception) - Constructor for class org.lexevs.dao.database.service.error.DefaultDatabaseError
Instantiates a new default database error.
DefaultDatabaseUtility - Class in org.lexevs.dao.database.utility
Spring JDBC implementation of DefaultDatabaseUtility.
DefaultDatabaseUtility() - Constructor for class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
DefaultDefinitionPropertyResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class DefaultDefinitionPropertyResolver.
DefaultDefinitionPropertyResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
DefaultGraphQueryBuilder - Class in org.LexGrid.LexBIG.Impl.pagedgraph.query
The Class DefaultGraphQueryBuilder.
DefaultGraphQueryBuilder(String, String, GraphQuery) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
DefaultGraphQueryBuilder(String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
Instantiates a new default graph query builder.
DefaultGraphQueryBuilder.InvalidMatchCodeNamspacePair - Class in org.LexGrid.LexBIG.Impl.pagedgraph.query
 
defaultInstance() - Static method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
defaultInstance() - Static method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
Default instance.
defaultInstance() - Static method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
Returns a default singleton instance of the service.
defaultInstance() - Static method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
defaultInstance() - Static method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
Returns a default singleton instance of the service.
defaultInstance() - Static method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
Returns a default singleton instance of the service.
defaultInstance() - Static method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
defaultLanguage - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
defaultLanguage_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
DefaultLanguageAddingListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving defaultLanguageAdding events.
DefaultLanguageAddingListener() - Constructor for class org.lexevs.dao.database.service.listener.DefaultLanguageAddingListener
 
DefaultLexEvsDatabaseOperations - Class in org.lexevs.dao.database.operation
The Class LexEvsPersistenceConnectionManager.
DefaultLexEvsDatabaseOperations() - Constructor for class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
DefaultLexEvsIndexOperations - Class in org.lexevs.dao.index.operation
 
DefaultLexEvsIndexOperations() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
DefaultLexEVSIndexOperationsCleanupIndexesTest - Class in org.lexevs.dao.index.operation
 
DefaultLexEVSIndexOperationsCleanupIndexesTest() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCleanupIndexesTest
 
DefaultLexEVSIndexOperationsCreateIndexTest - Class in org.lexevs.dao.index.operation
 
DefaultLexEVSIndexOperationsCreateIndexTest() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateIndexTest
 
DefaultLexEVSIndexOperationsCreateMultipleIndexesTest - Class in org.lexevs.dao.index.operation
 
DefaultLexEVSIndexOperationsCreateMultipleIndexesTest() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateMultipleIndexesTest
 
DefaultLexEVSIndexOperationsRemoveTest - Class in org.lexevs.dao.index.operation
 
DefaultLexEVSIndexOperationsRemoveTest() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
DefaultLexEVSIndexOperationsWriteOverIndexTest - Class in org.lexevs.dao.index.operation
 
DefaultLexEVSIndexOperationsWriteOverIndexTest() - Constructor for class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsWriteOverIndexTest
 
DefaultLexEvsPrefixResolver - Class in org.lexevs.tree.dao.prefixresolver
Deprecated.
DefaultLexEvsPrefixResolver() - Constructor for class org.lexevs.tree.dao.prefixresolver.DefaultLexEvsPrefixResolver
Deprecated.
 
DefaultLexEvsPrefixResolver - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver
The Class DefaultLexEvsPrefixResolver.
DefaultLexEvsPrefixResolver() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver.DefaultLexEvsPrefixResolver
 
DefaultLexEVSPropertiesFactory - Class in org.lexgrid.loader.properties.impl
A factory for creating DefaultLexEVSProperties objects.
DefaultLexEVSPropertiesFactory() - Constructor for class org.lexgrid.loader.properties.impl.DefaultLexEVSPropertiesFactory
 
DefaultLuceneDirectoryCreator - Class in org.lexevs.dao.index.lucenesupport
The Class DefaultLuceneDirectoryCreator.
DefaultLuceneDirectoryCreator() - Constructor for class org.lexevs.dao.index.lucenesupport.DefaultLuceneDirectoryCreator
 
DefaultMrconsoEntityDescriptionResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class DefaultMrconsoEntityDescriptionResolver.
DefaultMrconsoEntityDescriptionResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.DefaultMrconsoEntityDescriptionResolver
 
DefaultMrconsoNoCodeHandler - Class in org.lexgrid.loader.rrf.data.entity
The Class DefaultMrconsoNoCodeHandler.
DefaultMrconsoNoCodeHandler() - Constructor for class org.lexgrid.loader.rrf.data.entity.DefaultMrconsoNoCodeHandler
 
DefaultMrconsoNoCodeHandlerTest - Class in org.lexgrid.loader.rrf.data.entity
The Class DefaultMrconsoNoCodeHandlerTest.
DefaultMrconsoNoCodeHandlerTest() - Constructor for class org.lexgrid.loader.rrf.data.entity.DefaultMrconsoNoCodeHandlerTest
 
DefaultMrrankUtility - Class in org.lexgrid.loader.rrf.data.property
The Class DefaultMrrankUtility.
DefaultMrrankUtility() - Constructor for class org.lexgrid.loader.rrf.data.property.DefaultMrrankUtility
 
DefaultMrsabUtility - Class in org.lexgrid.loader.rrf.data.codingscheme
The Class DefaultMrsabUtility.
DefaultMrsabUtility() - Constructor for class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
 
DefaultMrsatUtility - Class in org.lexgrid.loader.rrf.data.property
The Class DefaultMrsatUtility.
DefaultMrsatUtility() - Constructor for class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
 
DefaultNamespaceHandler - Class in org.LexGrid.LexBIG.Impl.namespace
 
DefaultNamespaceHandler() - Constructor for class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandler
 
DefaultNamespaceHandler(LexEvsServiceLocator) - Constructor for class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandler
 
DefaultNamespaceHandlerTest - Class in org.LexGrid.LexBIG.Impl.namespace
 
DefaultNamespaceHandlerTest() - Constructor for class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
DefaultOptionHolder - Class in edu.mayo.informatics.lexgrid.convert.options
The Class DefaultOptionHolder.
DefaultOptionHolder() - Constructor for class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
DefaultPagingCodingSchemeInserter - Class in edu.mayo.informatics.lexgrid.convert.inserter
The Class DefaultPagingCodingSchemeInserter.
DefaultPagingCodingSchemeInserter() - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
DefaultPagingCodingSchemeInserter(ResolverProcessor) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
DefaultPrefixResolver - Class in org.lexevs.dao.database.prefix
The Class DefaultPrefixResolver.
DefaultPrefixResolver() - Constructor for class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
DefaultResolverProcessor - Class in edu.mayo.informatics.lexgrid.convert.validator.processor
The Class DefaultResolverProcessor.
DefaultResolverProcessor() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.processor.DefaultResolverProcessor
 
DefaultRootBuilder - Class in org.lexevs.dao.database.operation.root
 
DefaultRootBuilder() - Constructor for class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
DefaultRootBuilderTest - Class in org.lexevs.dao.database.operation.root
 
DefaultRootBuilderTest() - Constructor for class org.lexevs.dao.database.operation.root.DefaultRootBuilderTest
 
DefaultRubricProcessorImpl - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces
 
DefaultRubricProcessorImpl(ClaML, CodingScheme, Entity, ClaMLConfig, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces.DefaultRubricProcessorImpl
 
DefaultServiceEventListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving defaultServiceEvent events.
DefaultServiceEventListener() - Constructor for class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
defaultSource(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
DefaultStagingManager - Class in org.lexgrid.loader.staging
The Class DefaultStagingManager.
DefaultStagingManager() - Constructor for class org.lexgrid.loader.staging.DefaultStagingManager
 
DefaultStagingManagerTest - Class in org.lexgrid.loader.staging
 
DefaultStagingManagerTest() - Constructor for class org.lexgrid.loader.staging.DefaultStagingManagerTest
 
DefaultSystemEventListener - Class in org.lexevs.system.listener
 
DefaultSystemEventListener() - Constructor for class org.lexevs.system.listener.DefaultSystemEventListener
 
DefaultTransitivityBuilder - Class in org.lexevs.dao.database.operation.transitivity
 
DefaultTransitivityBuilder() - Constructor for class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
DefaultTransitivityBuilder.TripleIterator - Class in org.lexevs.dao.database.operation.transitivity
 
DefaultTransitivityBuilderTest - Class in org.lexevs.dao.database.operation.transitivity
 
DefaultTransitivityBuilderTest() - Constructor for class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
DefaultVersion20Scheme - Class in org.lexevs.dao.database.scheme
The Class DefaultVersion20Scheme.
DefaultVersion20Scheme() - Constructor for class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
 
DEFINED_BY - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
DefinedNode - Class in org.lexevs.dao.database.access.association.model
 
DefinedNode() - Constructor for class org.lexevs.dao.database.access.association.model.DefinedNode
 
DEFINING_CONCEPTS - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
DEFINING_ROLES - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
definition - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
Definition - Class in org.LexGrid.concepts
A property that defines the entity in a particular langage or context..
Definition() - Constructor for class org.LexGrid.concepts.Definition
 
definition - Static variable in class org.lexgrid.exporter.owlrdf.Skos
 
definition(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
DEFINITION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
DEFINITION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DefinitionDescriptor - Class in org.LexGrid.concepts.descriptors
Class DefinitionDescriptor.
DefinitionDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.DefinitionDescriptor
 
DefinitionEntry - Class in org.LexGrid.valueSets
A reference to an entry code, a coding scheme or another value set definition along with the instructions about how the reference is applied.
DefinitionEntry() - Constructor for class org.LexGrid.valueSets.DefinitionEntry
 
DefinitionEntryContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Value Set Definition Entry SWT Table.
DefinitionEntryContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.DefinitionEntryContentProvider
 
DefinitionEntryDescriptor - Class in org.LexGrid.valueSets.descriptors
Class DefinitionEntryDescriptor.
DefinitionEntryDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
 
DefinitionOperator - Enum in org.LexGrid.valueSets.types
The description of how a given definition entry is applied
DefinitionOperatorDescriptor - Class in org.LexGrid.valueSets.types.descriptors
Class DefinitionOperatorDescriptor.
DefinitionOperatorDescriptor() - Constructor for class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
 
DefinitionPropertyDataTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
DefinitionPropertyDataTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
 
definitionSources - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
DEFINITON_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
degreeOfFidelity - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
DelegatingDatabaseToXmlRegistry - Class in org.lexevs.registry.service
The Class DelegatingDatabaseToXmlRegistry.
DelegatingDatabaseToXmlRegistry() - Constructor for class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
DelegatingSystemResourceService - Class in org.lexevs.system.service
The Class DelegatingSystemResourceService.
DelegatingSystemResourceService() - Constructor for class org.lexevs.system.service.DelegatingSystemResourceService
 
DELETE_ALL_CODINGSCHEME_PROPERTIES_OF_CODINGSCHEME_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
DELETE_ALL_DEFINITIONENTRY_PROPERTIES_OF_VALUESET_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_ALL_ENTITY_PROPERTIES_OF_CODINGSCHEME_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The DELET e_ al l_ entit y_ propertie s_ o f_ codingschem e_ sql.
DELETE_ALL_PICKLIST_DEFINITION_PROPERTIES_OF_PCIKLIST_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_ALL_PICKLIST_ENTRY_PROPERTIES_OF_PCIKLIST_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_ALL_PROPERTIES_OF_PARENT_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
DELETE_ALL_RELATION_PROPERTIES_OF_CODINGSCHEME_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
DELETE_ALL_VALUESET_DEFINITION_PROPERTIES_OF_VALUESET_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_CONTEXT_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
DELETE_CONTEXT_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
DELETE_MAPPINGS_By_REFERENCE_GUID_TYPE_AND_SUPP_ATTRIB_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
DELETE_PICKLIST_ENTRY_CONTEXT_BY_PICKLIST_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
DELETE_PICKLIST_ENTRY_CONTEXT_BY_PICKLIST_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
DELETE_PROP_MULTI_ATTRIB_BY_PROP_UID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_PROPERTY_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
DELETE_PROPERTY_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
DELETE_PROPERTY_MULTIATTRIB_BY_PROPERTY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
DELETE_SOURCE_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
DELETE_SOURCE_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
DELETE_URIMAPS_BY_REFERENCE_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
DELETE_URIMAPS_BY_REFERENCE_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
deleteAllAssocQualsByAssocDataUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
deleteAllAssocQualsByAssocDataUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
deleteAllCodingSchemePropertiesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Delete all coding scheme properties of coding scheme.
deleteAllCodingSchemePropertiesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
deleteAllDefinitionEntityPropertiesOfValueSetDefinition(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Delete all DefinitionEntity properties of value set definition.
deleteAllDefinitionEntityPropertiesOfValueSetDefinition(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteAllEntityPropertiesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Delete all entity properties of coding scheme.
deleteAllEntityPropertiesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
deleteAllEntityPropertiesOfCodingScheme() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Delete all entity properties of coding scheme.
deleteAllEntryStateByEntryUIdAndType(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStateByEntryUIdAndType(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllEntryStateEntriesByEntryUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStateEntriesByEntryUId(String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
deleteAllEntryStateEntriesByEntryUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllEntryStateEntriesByEntryUId(String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
deleteAllEntryStateOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
deleteAllEntryStateOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
deleteAllEntryStateOfEntity(String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
deleteAllEntryStateOfEntity(String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
deleteAllEntryStateOfRelation(String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
deleteAllEntryStateOfRelation(String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
deleteAllEntryStatesOfPickListDefinitionByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStatesOfPickListDefinitionByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllEntryStatesOfPLEntryNodeByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStatesOfPLEntryNodeByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllEntryStatesOfValueSetDefinitionByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStatesOfValueSetDefinitionByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllEntryStatesOfVsPropertiesByParentUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
 
deleteAllEntryStatesOfVsPropertiesByParentUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
deleteAllPickListDefinitionProperties(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Delete all properties of a pick list definition.
deleteAllPickListDefinitionProperties(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteAllPickListEntityPropertiesOfPickListDefinition(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Delete all PickListEntity properties of pick list definition.
deleteAllPickListEntityPropertiesOfPickListDefinition(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteAllPickListEntryNodeProperties(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
deleteAllPickListEntryNodeProperties(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteAllPropertiesOfParent(String, String, PropertyDao.PropertyType) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Delete all entity properties of coding scheme.
deleteAllPropertiesOfParent(String, String, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
deleteAllRelationPropertiesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Delete all relation properties of coding scheme.
deleteAllRelationPropertiesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
deleteAllValueSetDefinitionProperties(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Delete all properties of a value set definition.
deleteAllValueSetDefinitionProperties(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteAssnTargetByUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
deleteAssnTargetByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
deleteAssociationData(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
deleteAssociationData(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
deleteAssociationMultiAttribsByAssociationTargetUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
deleteAssociationMultiAttribsByAssociationTargetUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
deleteAssociationQualificationsByCodingSchemeUId(String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
deleteAssociationQualificationsByCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
deleteAssociationQualificationsByRelationUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
deleteAssociationQualificationsByRelationUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
deleteCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Delete coding scheme.
deleteCodingSchemeByUId(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Delete coding scheme by id.
deleteCodingSchemeByUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
deleteCodingSchemeByUId(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
deleteCodingSchemeLocalNames(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
deleteCodingSchemeLocalNames(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
deleteCodingSchemeLocalNames(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
deleteCodingSchemeMappings(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
deleteCodingSchemeMappings(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
deleteCodingSchemeMappings(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
deleteCodingSchemeSources(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
deleteCodingSchemeSources(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Delete source.
deleteCodingSchemeSources(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
deleteDefinitionEntry(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
deleteDefinitionEntry(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
deleteDocuments(String, String, Term) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
deleteDocuments(String, String, Query) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
deleteDocuments(String, String, Query) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
deleteDocuments(String, String, Query) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
deleteDocuments(String, String, Term) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
deleteDocuments(String, String, Query) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
deleteDocuments(String, String, Query) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
deleteEntityFromIndex(String, String, Entity) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
deleteEntityFromIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
deleteEntityFromIndex(String, String, String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.AssertedValueSetSearchIndexService
Deletes an entity to the index targeted by source coding scheme and defined further by the value set URI
deleteEntityFromIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
deleteEntityFromIndex(String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
deleteEntityFromIndex(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
deleteEntityFromIndex(String, String, String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
deleteEntityFromIndex(String, String, Entity) - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
deleteEntityFromIndexTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
DeleteFromOneVSButNotTheOther() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
deleteFromTransitiveTable(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
deleteFromTransitiveTableByCodingSchemeUid(String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
deleteFromTransitiveTableByCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
deleteIndex(String, String) - Method in class org.lexevs.dao.index.connection.IndexInterface
Delete index.
deleteIndex(String) - Method in class org.lexevs.dao.indexer.api.IndexerService
Delete an index from this indexerService.
DeleteLexGridTerminology - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for removing a terminology from a server.
DeleteLexGridTerminology() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
deletePickListDefinitionMappings(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
deletePLEntryNodeByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
deletePLEntryNodeByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
deletePropertyByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
deletePropertyByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
deleteRecursive(File) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
deleteRegistryEntry(RegistryEntry) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Delete registry entry.
deleteRegistryEntry(RegistryEntry) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
deleteRegistryXmlFile() - Method in class org.lexevs.registry.service.DatabaseRegistryTest.TestingRegistryXmlToDatabaseTransfer
 
deleteRegistryXmlFile() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Delete registry xml file exist.
deleteURIMap(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Removes value set supported attribute
deleteURIMap(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
deleteValueSetDefinitionMappings(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
DELIM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
DELIM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
DELIM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
DELIMITER - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
DELIMITER_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
DEPRECATED_NAME_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The FORMA l_ nam e_ property.
depth - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
DESCENDING - Static variable in class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
Describable - Class in org.LexGrid.commonTypes
Any resource that can have an associated description.
Describable() - Constructor for class org.LexGrid.commonTypes.Describable
 
DescribableDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class DescribableDescriptor.
DescribableDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
 
description() - Method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.ClassKinds
 
description() - Method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.RubricKinds
 
description - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
description - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
The DESCRIPTION.
DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
The DESCRIPTION.
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.HL7_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MedDRA_Loader
 
DESCRIPTION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
 
DESCRIPTION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MIFVocabularyLoader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MrMap_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OBO_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OWL2_Loader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OWL_Loader
 
DESCRIPTION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.ResolvedValueSetDefinitionLoader
 
DESCRIPTION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.SourceAssertedVStoCodingSchemeLoader
 
description - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.Text_Loader
 
DESCRIPTION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
 
description - Variable in class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
description - Static variable in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
description_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
description_ - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
description_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
description_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
destroy() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
destroy() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
destroy() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
destroy() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
destroy() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
destroy() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
destroy() - Method in class org.lexevs.cache.CacheRegistry
 
destroy() - Static method in class org.lexevs.cache.CacheSessionManager
 
destroy() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
 
destroy() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Destroy.
destroy() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
destroy() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
 
destroy() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
destroy() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
destroy() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
destroy() - Method in class org.lexevs.locator.LexEvsServiceLocator
 
destroy() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
destroyIndex(String) - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
destroyIndex(String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
destroyScheme() - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
 
destroyScheme() - Method in interface org.lexevs.dao.database.scheme.PersistenceScheme
Destroy scheme.
destroySubcontext(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
destroySubcontext(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
DialectSettingPostProcessor - Class in org.lexevs.dao.database.spring
Spring Bean Post Processor to set the dynamically determined Dialect.
DialectSettingPostProcessor() - Constructor for class org.lexevs.dao.database.spring.DialectSettingPostProcessor
 
dialog_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
DialogHandler - Class in org.LexGrid.LexBIG.gui
Class to simplify putting error messages into dialogs.
DialogHandler(Shell) - Constructor for class org.LexGrid.LexBIG.gui.DialogHandler
 
DIFFERENCE - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
difference(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
difference(CodeHolder) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Difference.
difference(CodeHolder) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
difference(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Return a coded node set that represents the set of nodes in this set that are not included by the given set.
diffInShortName(String, List<String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
DirectCodingSchemeInserter - Class in edu.mayo.informatics.lexgrid.convert.inserter
The Class DirectCodingSchemeInserter.
DirectCodingSchemeInserter() - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.DirectCodingSchemeInserter
 
DirectionalName - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the DirectionalName restrictions.
DirectionalName() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.DirectionalName
 
directionalNames - Variable in class org.LexGrid.LexBIG.gui.restrictions.DirectionalName
 
Display - Class in org.LexGrid.LexBIG.gui.displayResults
Hack class to fix bad behavior.
Display(Visualization) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.Display
 
displayAndGetSelection() - Method in class org.LexGrid.LexBIG.admin.CodingSchemeSelectionMenu
Display the list of available coding schemes and process the user selection.
displayAndGetSelection() - Method in class org.LexGrid.LexBIG.example.CodingSchemeSelectionMenu
Display the list of available coding schemes and process the user selection.
displayAndGetSelection(String) - Method in class org.LexGrid.LexBIG.example.RevolvedValueSetSelectionMenu
Display the list of available coding schemes and process the user selection.
displayAndGetSelection(String) - Method in class org.LexGrid.LexBIG.example.ValueSetDefinitionSelectionMenu
Display the list of available value set definitions and process the user selection.
displayAndGetSelection() - Method in class org.lexgrid.valuesets.admin.CodingSchemeSelectionMenu
Display the list of available coding schemes and process the user selection.
displayAndLogError(String, Throwable) - Static method in class org.LexGrid.LexBIG.admin.Util
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogError(Throwable) - Static method in class org.LexGrid.LexBIG.admin.Util
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogError(String, Throwable) - Static method in class org.lexgrid.valuesets.admin.Util
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogError(Throwable) - Static method in class org.lexgrid.valuesets.admin.Util
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogError(String, Throwable) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogError(Throwable) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Outputs messages to the error log and administration console, with additional tagging to assist servicability.
displayAndLogMessage(String) - Static method in class org.LexGrid.LexBIG.admin.Util
Outputs messages to the information log and administration console, with additional tagging to assist service-ability.
displayAndLogMessage(String) - Static method in class org.lexgrid.valuesets.admin.Util
Outputs messages to the information log and administration console, with additional tagging to assist service-ability.
DisplayCodedNodeSet - Class in org.LexGrid.LexBIG.gui.displayResults
This class displays the results of a CodedNodeSet query in a shell.
DisplayCodedNodeSet(LB_GUI, CodedNodeGraph, SortOptionList, boolean, boolean, boolean, int, int, ConceptReference) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
DisplayCodedNodeSet(LB_GUI, CodedNodeSet, SortOptionList) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
displayCodingSchemes() - Method in class org.LexGrid.LexBIG.admin.CodingSchemeSelectionMenu
Displays a list of available coding schemes.
displayCodingSchemes() - Method in class org.LexGrid.LexBIG.example.CodingSchemeSelectionMenu
Displays a list of available coding schemes.
displayCodingSchemes() - Method in class org.LexGrid.LexBIG.example.RevolvedValueSetSelectionMenu
Displays a list of available coding schemes.
displayCodingSchemes() - Method in class org.lexgrid.valuesets.admin.CodingSchemeSelectionMenu
Displays a list of available coding schemes.
displayCommandOptions(String, Options, String, Throwable) - Static method in class org.LexGrid.LexBIG.admin.Util
Outputs a standard message to administration console indicating supported command line options.
displayCommandOptions(String, Options, String, Throwable) - Static method in class org.lexgrid.valuesets.admin.Util
Outputs a standard message to administration console indicating supported command line options.
displayCommandOptions(String, Options, String, Throwable) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Outputs a standard message to administration console indicating supported command line options.
displayConceptDetails(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
displayConceptDetails(ResolvedPickListEntry) - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
displayConceptDetails(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
displayConceptDetails(String) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayFilterResult
 
displayExporterStatus(Exporter) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays any available status messages, polling periodically and returning when the export operation is complete.
displayExporterStatus(Exporter) - Static method in class org.lexgrid.valuesets.admin.Util
Displays any available status messages, polling periodically and returning when the export operation is complete.
displayExporterStatus(Exporter) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Displays any available status messages, polling periodically and returning when the export operation is complete.
displayHelp() - Static method in class org.LexGrid.util.file.CopyrightFieldScrubber
Displays basic information regarding the program and its usage to standard output.
displayHelp() - Static method in class org.LexGrid.util.file.CopyrightScrubber
Displays basic information regarding the program and its usage to standard output.
displayLoaderStatus(Loader) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays any available status messages, polling periodically and returning when the load operation is complete.
displayLoaderStatus(Loader) - Static method in class org.lexgrid.valuesets.admin.Util
Displays any available status messages, polling periodically and returning when the load operation is complete.
displayLoaderStatus(Loader) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Displays any available status messages, polling periodically and returning when the load operation is complete.
displayMessage(String) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays a message to the administration console.
displayMessage(String) - Static method in class org.lexgrid.valuesets.admin.Util
Displays a message to the administration console.
displayMessage(String) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Displays a message to the administration console.
displayStatus(StatusReporter) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays any available status messages, polling periodically and returning when the export operation is complete.
displayStatus(StatusReporter) - Static method in class org.lexgrid.valuesets.admin.Util
Displays any available status messages, polling periodically and returning when the export operation is complete.
displayTaggedMessage(String) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays a message to the administration console, with additional tagging to assist servicability.
displayTaggedMessage(String, Throwable, String) - Static method in class org.LexGrid.LexBIG.admin.Util
Displays a message to the administration console, with additional tagging to assist servicability.
displayTaggedMessage(String) - Static method in class org.lexgrid.valuesets.admin.Util
Displays a message to the administration console, with additional tagging to assist servicability.
displayTaggedMessage(String, Throwable, String) - Static method in class org.lexgrid.valuesets.admin.Util
Displays a message to the administration console, with additional tagging to assist servicability.
displayTaggedMessage(String) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Displays a message to the administration console, with additional tagging to assist servicability.
displayTaggedMessage(String, Throwable, String) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Displays a message to the administration console, with additional tagging to assist servicability.
displayValueSetDefinitions() - Method in class org.LexGrid.LexBIG.example.ValueSetDefinitionSelectionMenu
Displays a list of available value set definitions.
dispose() - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.DefinitionEntryContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceContentProvider
 
dispose() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
DO_WITH_EMF - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
doApplyCommonManifestElements(CodingSchemeManifest, CodingScheme, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
Method applies the given manifest data to an EMF-based CodingScheme based on the suitable flag values and conditions.
doBuildAssociationList(String, String, String, String, String, boolean, boolean, int, int, int, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback, AssociationListBuilder.AssociationDirection) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
Do build association list.
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractContainsSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchBoostingSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
Do build query.
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractStartsWithSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LeadingAndTrailingWildcardSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSearch
 
doBuildQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SpellingErrorTolerantSubStringSearch
 
doBuildResolvedConceptReference(CodeToReturn, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeToReturnResolver
 
doBuildSql(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int, boolean) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
 
doBuildSql(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
 
doCacheMethod(T) - Method in class org.lexevs.cache.AbstractMethodCachingBean
Cache method.
doClassify(I, Map<Class<? extends URIMap>, String>) - Method in class org.lexevs.dao.database.constants.classifier.mapping.AbstractMappingClassifier
Do classify.
doClassify(Class<? extends URIMap>, Map<Class<? extends URIMap>, String>) - Method in class org.lexevs.dao.database.constants.classifier.mapping.ClassToStringMappingClassifier
 
doClassify(String, Map<Class<? extends URIMap>, String>) - Method in class org.lexevs.dao.database.constants.classifier.mapping.StringToClassMappingClassifier
 
doCompact() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
 
doCompact() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
doCompare(T, T, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Do compare.
DoConversion() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.BaseLoader.DoConversion
 
doCreateValueSetDefinitionCompiler() - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
 
DocumentFromStringsGenerator - Class in org.lexevs.dao.indexer.api.generators
This class assists in building 'proper' documents for the index.
DocumentFromStringsGenerator() - Constructor for class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
doDistinctQuery(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Do distinct query.
doDropCodingSchemeTables(String, String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doDropIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
doDropIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.SearchIndexAwareEntityIndexService
 
doDumpSqlScripts(DatabaseType, Resource, String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doesAssociationExist(CodingScheme, String, String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
doesCodeParticipateInMapping(String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
Does code participate in mapping.
doesDBExist(String, String, String, String, String, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
doesEntityParticipateInRelationships(String, String, String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
doesEntityParticipateInRelationships(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.operation.LexEvsIndexOperations
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
doesIndexExist(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
doesIndexHaveMatchingRegistryEntry(File, List<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
doesOptionExist(List<? extends BaseOption<?>>, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doesPrefixAlreadyExistInDatabase(String) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
doesRegistryXmlFileExist() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Does registry xml file exist.
doesSearchStringContainSpecialCharacters(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
Does search string contain special characters.
doesServiceContainAssertedValueSetTerminology(AssertedValueSetParameters) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
doesServiceContainAssertedValueSetTerminology(AssertedValueSetParameters) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Use a parameter set to determine whether this terminology service contains the source asserted value set source terminology defined in the parameter set.
doesStatusExist(CodingScheme, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
doesTableExist(String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Does table exist.
doesTableExist(String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
doExecute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
doExecute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.IndexingTasklet
 
doExecute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
 
doExecute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
doExecute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
doExecutePage() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Do execute page.
doExecutePage() - Method in class org.lexevs.paging.AbstractPageableIterator
Do execute page.
doExecutePage() - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator
 
doExecutePageOnSize(int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Do execute page.
doExecutePageOnSize(int) - Method in class org.lexevs.paging.AbstractPageableIterator
Do execute page.
doExecuteSql(Resource, DefaultLexEvsDatabaseOperations.PlatformActor) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doExecuteSql(Resource, DefaultLexEvsDatabaseOperations.PlatformActor, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doExport() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
doExport() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
doExport() - Method in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
doExport() - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
doFinalize() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
doGetAreCodesRelated(ConceptReference, ConceptReference, NameAndValue, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
doGetAssociatedConcepts(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], List<String>, List<CodedNodeGraphService.Sort>, CodedNodeGraphDao.TripleNode) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
Do get associated concepts.
doGetAssociationDirectionalName(String, CodingSchemeVersionOrTag, String, LexBIGServiceConvenienceMethodsImpl.DirectionalName) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
doGetAssociationNames(String, CodingSchemeVersionOrTag, LexBIGServiceConvenienceMethodsImpl.DirectionalName) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
doGetConceptReferences(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, CodedNodeGraphDao.TripleNode, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doGetCountConceptReferences(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, CodedNodeGraphDao.TripleNode) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doGetDao(String, String, List<T>) - Method in class org.lexevs.dao.database.access.DaoManager
Do get dao.
doGetDao(String, List<T>) - Method in class org.lexevs.dao.database.access.DaoManager
 
doGetDao(String, String, List<T>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Do get dao.
doGetFieldSelector() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyLazyCodeToReturn
 
doGetPropertyLinks(String, String, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Deprecated.
doGetPropertyMultiAttrib(String, String, Class<T>) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
doGetPropertyMultiAttrib(String, Class<T>) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces.AbstractJoinQueryRestriction
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToAnonymous
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToCodes
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToEntityTypes
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingProperties
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
doGetQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToStatus
 
doGetRefresh() - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator
Do get refresh.
doGetRefresh() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
doGetRefresh() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
doGetRefresh() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
doGetRefresh() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
doGetSql(Resource, DefaultLexEvsDatabaseOperations.PlatformActor) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doGetSql(DatabaseType, Resource, DefaultLexEvsDatabaseOperations.PlatformActor) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
doGetStringFields() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyLazyCodeToReturn
 
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.access.AbstractBaseIndexDao
Do get supported lex evs index format versions.
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.lucene.v2009.entity.LuceneEntity2009Dao
 
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
doGetSupportedLexEvsIndexFormatVersions() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.access.AbstractBaseDao
Do get supported lg schema versions.
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetHierarchyDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
doGetSupportedLgSchemaVersions() - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
doGetTripleUids(String, String, String, String, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, CodedNodeGraphDao.TripleNode, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doGetTripleUidsCount(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, CodedNodeGraphDao.TripleNode) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
doGetValidClasses() - Method in class edu.mayo.informatics.lexgrid.convert.validator.AbstractValidator
Do get valid classes.
doGetValidClasses() - Method in class edu.mayo.informatics.lexgrid.convert.validator.NullNamespaceValidator
 
doGetValidErrorCodes() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver
 
doGetValidErrorCodes() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
Do get valid error codes.
doGetValidErrorCodes() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.NullNamespaceResolver
 
doGroupsMatch(List<Mrconso>, List<Mrsat>) - Method in class org.lexgrid.loader.meta.reader.support.MrconsoMrsatCompositeGroupComparator
 
doGroupsMatch(List<Mrrel>, List<Mrhier>) - Method in class org.lexgrid.loader.meta.reader.support.MrrelMrhierCompositeGroupComparator
 
doGroupsMatch(List<Mrsty>, List<Mrdef>) - Method in class org.lexgrid.loader.meta.reader.support.MrstyMrdefCompositeGroupComparator
 
doGroupsMatch(List<CompositeReaderChunk<Mrconso, Mrsat>>, List<CompositeReaderChunk<Mrsty, Mrdef>>) - Method in class org.lexgrid.loader.meta.reader.support.TotalEntityCompositeGroupComparator
 
doGroupsMatch(List<I1>, List<I2>) - Method in interface org.lexgrid.loader.reader.support.CompositeGroupComparator
Do groups match.
doHandleNoCode(Mrconso) - Method in class org.lexgrid.loader.rrf.data.entity.AbstractMrconsoNoCodeHandler
Do handle no code.
doHandleNoCode(Mrconso) - Method in class org.lexgrid.loader.rrf.data.entity.DefaultMrconsoNoCodeHandler
 
doHistoryTablesExist(String, String, String, String, String) - Static method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
doHistoryTablesExist() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
doHydrate() - Method in class org.lexevs.dao.database.lazyload.AbstractLazyLoadable
Do hydrate.
doHydrate() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Do hydrate.
doInBlockJoinIndexSearcher(BaseLuceneIndexTemplate.ToParentBlockJoinIndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
doInBlockJoinIndexSearcher(ToParentBlockJoinIndexSearcher) - Method in interface org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate.ToParentBlockJoinIndexSearcherCallback
 
doIndex(AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doInIndexReader(BaseLuceneIndexTemplate.IndexReaderCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
doInIndexReader(IndexReader) - Method in interface org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate.IndexReaderCallback
 
doInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
doInIndexSearcher(IndexSearcher) - Method in interface org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate.IndexSearcherCallback
 
doInIndexSearcher(MetaDataIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
doInIndexSearcher(IndexSearcher) - Method in interface org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate.IndexSearcherCallback
 
doInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
doInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
doInIndexWriter(IndexWriter) - Method in interface org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate.IndexWriterCallback
 
doInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
doInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
doInsertAssociationData(String, String, String, AssociationSource, AssociationData, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
doInsertAssociationPredicate(String, String, String, String, AssociationPredicate) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
Do insert association predicate.
doInsertAssociationSource(String, String, String, Relations, String, List<AssociationSource>) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
Do insert association source.
doInsertAssociationTarget(String, String, String, AssociationSource, AssociationTarget, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
doInsertCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
 
doInsertCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
 
doInsertCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DirectCodingSchemeInserter
 
doInsertCodingScheme(String, String, CodingScheme, String, String, boolean) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Do insert coding scheme.
doInsertCodingSchemeLocalName(String, String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
doInsertCodingSchemeSource(String, String, String, String, Source) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
doInsertDependentChanges(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
doInsertDependentChanges(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
doInsertDependentChanges(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, CodingScheme) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
doInsertDependentChanges(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
doInsertDependentChanges(RevisableAbstractDatabaseService.ParentUidReferencingId, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
doInsertDependentChanges(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
doInsertDependentChanges(I, T) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Do insert dependent changes.
doInsertEntity(String, String, Entity, Inserter, boolean) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Insert entity.
doInsertHistoryEntity(String, String, Entity, Inserter, boolean) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
doInsertHistoryProperty(String, String, Property, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
doInsertHistoryRelation(String, String, Relations, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
doInsertIntoTransitiveClosure(String, String, String, String, String, String, String, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Insert into transitive closure.
doInsertProperty(String, String, String, VSPropertyDao.ReferenceType, Property, Inserter) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Insert property.
doInsertProperty(String, String, String, Property, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Do insert property.
doInsertPropertyLink(String, String, String, String, String, String, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Do insert property link.
doInsertPropertyQualifier(String, String, String, String, PropertyQualifier, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Insert property qualifier.
doInsertPropertyQualifier(String, String, String, PropertyQualifier, Inserter) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Insert property qualifier.
doInsertPropertySource(String, String, String, String, Source, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Insert property source.
doInsertPropertySource(String, String, String, Source, Inserter) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Insert property source.
doInsertPropertyUsageContext(String, String, String, String, String, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Insert property usage context.
doInsertPropertyUsageContext(String, String, String, String, Inserter) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Insert property usage context.
doInsertRelations(String, String, String, Relations, boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
doJobRepositoryTablesExist() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Insert prefix variable.
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
doLoad() - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
doLoad() - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
doLoad() - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
doLoad() - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
doLoad() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
doLoadNonPagedItems(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
domain - Variable in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
doMain(String[]) - Method in class org.lexevs.dao.database.operation.tools.ScriptProducingLauncher
 
doMain(String[]) - Method in class org.lexevs.dao.index.operation.tools.CleanUpLuceneIndexLauncher
 
doMain(String[]) - Method in class org.LexGrid.LexBIG.admin.CleanUpMetadataLauncher
 
domain - Variable in class org.lexgrid.lexevs.ndfrt.data.RoleDef
 
DOMAIN - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
doPage(int, int) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder.TripleIterator
 
doPage(int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Returns a page of results.
doPage(int, int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
doPage(AbstractAssertedVSResolvedConceptReferenceIterator<T>, int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.Pager
Do page.
doPage(AbstractAssertedVSResolvedConceptReferenceIterator<T>, int, int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.Pager
 
doPage(int, int) - Method in class org.lexevs.paging.AbstractPageableIterator
Returns a page of results.
doPage(AbstractPageableIterator<T>, int, int) - Method in class org.lexevs.paging.AbstractPageableIterator.Pager
Do page.
doPage(int, int) - Method in class org.lexevs.paging.codednodegraph.TripleUidIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingTripleUidIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
doPage(int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.RootConceptReferenceIterator
 
doPage(int, int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
doPage(int, int, int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
doPostProcessing(OptionHolder, AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doProcess(I) - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Do process.
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.EntityPropertyQualifierProcessor
 
doProcess(I) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
doProcess(Mrsat) - Method in class org.lexgrid.loader.umls.processor.MrsatPropertyProcessor
Mrsat Properties are always set to 'isPreferred' = false; This processor assumes that all skippable entries in Mrsat have been skipped.
doProcess(Mrsty) - Method in class org.lexgrid.loader.umls.processor.MrstyPropertyProcessor
Mrsty Properties are always set to 'isPreferred' = false; This processor assumes that all skippable entries in Mrsty have been skipped.
doRefershingPage(AbstractRefereshingPageableIterator<R, T>, int, int) - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator.RefershingPager
Do refershing page.
doRefresh(R) - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator
Do refresh.
doRefresh(T) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
doRefresh(Map<String, ResolvedConceptReferencesIterator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
doRefresh(RootConceptReferenceIterator) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
doRefresh(Iterator<String>) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
doRefreshRemaining(AbstractAssertedVSResolvedConceptReferenceIterator<T>, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.RemainingRefresher
Do page.
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement.SupplementExtensionImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.ApproxNumOfConceptsPostProcessor
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
 
doRegister(ExtensionRegistry, ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
doRemoveProperty(String, String, String, Property, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Do remove property.
doResolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
Do resolve as list.
doResolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
doResolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
doResolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
doResolveAsValidatedParameterList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean, CycleDetectingCallback) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
doResolveAsValidatedParameterList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean, PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy, CycleDetectingCallback) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
doResolveAsValidatedParameterList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean, PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy, CycleDetectingCallback) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl
 
doResolveAsValidatedParameterList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean, PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy, CycleDetectingCallback) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.utility.ValidatedParameterResolvingCallback
 
doResolveError(EntityBatchInsertError.EntityBatchInsertErrorItem) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver
 
doResolveError(T) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
Do resolve error.
doResolveError(Object) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.NullNamespaceResolver
 
doResolveErrors(List<LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
 
doResolveErrors(List<LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
doResolvePropertiesOfParentByRevision(String, String, String, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Do resolve properties of parent by revision.
doRestrict(CodedNodeSetBackedMapping.DoRestrict, MappingExtension.Mapping.SearchContext) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
doReviseProperty(String, String, String, Property, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Do revise property.
doRunProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat, LgMessageDirectorIF, ProcessStatus) - Method in class org.LexGrid.LexBIG.Impl.loaders.AbstractProcessRunner
 
doRunProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat, LgMessageDirectorIF, ProcessStatus) - Method in class org.LexGrid.LexBIG.Impl.loaders.AssertedValueSetIndexLoaderImpl
 
doRunProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat, LgMessageDirectorIF, ProcessStatus) - Method in class org.LexGrid.LexBIG.Impl.loaders.IndexLoaderImpl
 
doRunProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat, LgMessageDirectorIF, ProcessStatus) - Method in class org.LexGrid.LexBIG.Impl.loaders.LoaderPostProcessRunner
 
doTablesExist(String, String, String, String, String) - Static method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
doTablesExist() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
doTransform(Set<AbsoluteCodingSchemeVersionReference>, ProxyProtectedScoreDocWrapper) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocTransformer
 
doTransform(Set<AbsoluteCodingSchemeVersionReference>, ProxyProtectedScoreDocWrapper) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedScoreDocTransformer
 
doTransform(C, I) - Method in interface org.LexGrid.LexBIG.Impl.helpers.Transformer
 
doTransitiveAndIndex(AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doTransitiveTable(AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
doTruncate(String[], Object, int) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Do truncate.
DOUBLE - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
DOUBLE_METAPHONE_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant DOUBLE_METAPHONE_PREFIX.
DOUBLE_METAPHONE_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The DOUBL e_ metaphon e_ propert y_ valu e_ field.
doubleMetaphoneEnabled_ - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The double metaphone enabled_.
doubleMetaphoneEnabled_ - Static variable in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
DoubleMetaphoneSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class DoubleMetaphoneSearch.
DoubleMetaphoneSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.DoubleMetaphoneSearch
 
doUpdateEntity(String, String, String, Entity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
doUpdateProperty(String, String, String, Property, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Do update property.
doUpdateRelation(String, String, String, Relations) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
doValidate(T, List<LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.validator.AbstractValidator
Do validate.
doValidate(Object, List<LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.validator.NullNamespaceValidator
 
doValidate(String, String, Entity) - Method in class org.lexevs.dao.database.service.listener.AbstractPreEntityInsertValidatingListener
Do validate.
doValidate(String, String, Entity) - Method in class org.lexevs.dao.database.service.listener.DuplicatePropertyIdListener
 
doValidate(String, String, Entity) - Method in class org.lexevs.dao.database.service.listener.InvalidPropertyLinkListener
 
doValidate(String, String, Entity) - Method in class org.lexevs.dao.database.service.listener.NullEntityNamespaceListener
 
doValidateNullNamespace(String, String, Relations, AssociationSource) - Method in class org.lexevs.dao.database.service.listener.AbstractPreAssociationInsertValidatingListener
Do validate null namespace.
doValidateNullNamespace(String, String, Relations, AssociationSource) - Method in class org.lexevs.dao.database.service.listener.NullAssociationNamespaceListener
 
doWrite(CodingSchemeUriVersionPair, List<T>) - Method in class org.lexgrid.loader.writer.AbstractCodingSchemeIdHolderWriter
 
doWrite(CodingSchemeUriVersionPair, List<ParentIdHolder<T>>) - Method in class org.lexgrid.loader.writer.AbstractParentIdHolderWriter
 
doWrite(CodingSchemeUriVersionPair, List<ParentIdHolder<AssociationQualification>>) - Method in class org.lexgrid.loader.writer.AssociationQualifierWriter
 
doWrite(CodingSchemeUriVersionPair, List<ParentIdHolder<AssociationSource>>) - Method in class org.lexgrid.loader.writer.AssociationSourceWriter
 
doWrite(CodingSchemeUriVersionPair, List<ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.writer.EntityPropertyWriter
 
doWrite(CodingSchemeUriVersionPair, List<Entity>) - Method in class org.lexgrid.loader.writer.EntityWriter
 
driver - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
driver - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The driver.
drivers - Static variable in class org.LexGrid.LexBIG.gui.Constants
 
dropAllStagingDatabases() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
dropAllStagingDatabases() - Method in interface org.lexgrid.loader.staging.StagingManager
Drop all staging databases.
dropAllTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropAllTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropAssertedValueSetIndex() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.CleanUpResolvedValueSetUpdateLoads
 
dropCodingSchemeHistoryTables(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeHistoryTables(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCodingSchemeHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCodingSchemeHistoryTablesByPrefix(String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeHistoryTablesByPrefix(String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCodingSchemeTables(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeTables(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCodingSchemeTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCodingSchemeTablesByPrefix(String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCodingSchemeTablesByPrefix(String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropCommonTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropCommonTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropDatabase(String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Drop database.
dropDatabase(String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
dropDatabase(String, String, String, String, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
dropDefaultTableConstraints() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Drops the constraints from the table
dropIndex() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
dropIndex(String, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
dropIndex(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
Drop index.
dropIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
dropIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
dropIndex(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
dropIndex(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
dropIndexForAllValueSets(String, String) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
dropJobRepositoryDatabases() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Drop job repository databases.
dropJobRepositoryDatabasesOnClose() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
dropNciHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropNciHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropSequence(String) - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Drop sequence.
dropStagingDatabase(String) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
dropStagingDatabase(String) - Method in interface org.lexgrid.loader.staging.StagingManager
Drop staging database.
dropTableConstraints() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
 
dropTables() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Drop tables.
dropTables() - Method in class org.lexevs.dao.database.connection.SQLInterface
Drop tables.
dropTables() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Drop all of the tables from a LexGrid database (in the correct order) This does drop all tables - including the optional ones.
dropValueSetHistoryTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropValueSetHistoryTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dropValueSetsTables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dropValueSetsTables() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
dumpCacheContentsToStdOut() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
dumpCacheContentsToStdOut() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
dumpCacheContentsToStdOut() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
dumpCacheContentsToStdOut() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
dumpCacheContentsToStdOut() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
dumpCacheContentsToStdOut() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
dumpLogQueue() - Static method in class org.lexevs.system.ResourceManager
Deprecated.
Dump log queue.
dumpSqlScripts(DatabaseType, String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
dumpSqlScripts(DatabaseType, String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
DuplicatePropertyIdListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving duplicatePropertyId events.
DuplicatePropertyIdListener() - Constructor for class org.lexevs.dao.database.service.listener.DuplicatePropertyIdListener
 
DuplicatePropertyIdListenerTest - Class in org.lexevs.dao.database.service.listener
 
DuplicatePropertyIdListenerTest() - Constructor for class org.lexevs.dao.database.service.listener.DuplicatePropertyIdListenerTest
 
DynamicPropertyApplicationContext - Class in org.lexevs.dao.database.spring
Generates a Spring Application Context.
DynamicPropertyApplicationContext(String, Properties) - Constructor for class org.lexevs.dao.database.spring.DynamicPropertyApplicationContext
Instantiates a new dynamic property application context.

E

EditHistory - Class in org.LexGrid.versions
An ordered collection of revisions
EditHistory() - Constructor for class org.LexGrid.versions.EditHistory
 
EditHistoryDescriptor - Class in org.LexGrid.versions.descriptors
Class EditHistoryDescriptor.
EditHistoryDescriptor() - Constructor for class org.LexGrid.versions.descriptors.EditHistoryDescriptor
 
edu.mayo.informatics.lexgrid.convert.Conversions - package edu.mayo.informatics.lexgrid.convert.Conversions
 
edu.mayo.informatics.lexgrid.convert.directConversions - package edu.mayo.informatics.lexgrid.convert.directConversions
 
edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets - package edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
edu.mayo.informatics.lexgrid.convert.directConversions.claml - package edu.mayo.informatics.lexgrid.convert.directConversions.claml
 
edu.mayo.informatics.lexgrid.convert.directConversions.claml.config - package edu.mayo.informatics.lexgrid.convert.directConversions.claml.config
 
edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces - package edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces
 
edu.mayo.informatics.lexgrid.convert.directConversions.fma - package edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
edu.mayo.informatics.lexgrid.convert.directConversions.hl7 - package edu.mayo.informatics.lexgrid.convert.directConversions.hl7
 
edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary - package edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon - package edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
edu.mayo.informatics.lexgrid.convert.directConversions.medDRA - package edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data - package edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
edu.mayo.informatics.lexgrid.convert.directConversions.mrmap - package edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2 - package edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
 
edu.mayo.informatics.lexgrid.convert.directConversions.owlapi - package edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl - package edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
 
edu.mayo.informatics.lexgrid.convert.directConversions.semnet - package edu.mayo.informatics.lexgrid.convert.directConversions.semnet
 
edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon - package edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
 
edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon - package edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
 
edu.mayo.informatics.lexgrid.convert.errorcallback - package edu.mayo.informatics.lexgrid.convert.errorcallback
 
edu.mayo.informatics.lexgrid.convert.exceptions - package edu.mayo.informatics.lexgrid.convert.exceptions
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor
 
edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util - package edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util
 
edu.mayo.informatics.lexgrid.convert.formats - package edu.mayo.informatics.lexgrid.convert.formats
 
edu.mayo.informatics.lexgrid.convert.formats.baseFormats - package edu.mayo.informatics.lexgrid.convert.formats.baseFormats
 
edu.mayo.informatics.lexgrid.convert.formats.inputFormats - package edu.mayo.informatics.lexgrid.convert.formats.inputFormats
 
edu.mayo.informatics.lexgrid.convert.formats.outputFormats - package edu.mayo.informatics.lexgrid.convert.formats.outputFormats
 
edu.mayo.informatics.lexgrid.convert.inserter - package edu.mayo.informatics.lexgrid.convert.inserter
 
edu.mayo.informatics.lexgrid.convert.inserter.error - package edu.mayo.informatics.lexgrid.convert.inserter.error
 
edu.mayo.informatics.lexgrid.convert.inserter.resolution - package edu.mayo.informatics.lexgrid.convert.inserter.resolution
 
edu.mayo.informatics.lexgrid.convert.options - package edu.mayo.informatics.lexgrid.convert.options
 
edu.mayo.informatics.lexgrid.convert.utility - package edu.mayo.informatics.lexgrid.convert.utility
 
edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences - package edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences
 
edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces - package edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces
 
edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders - package edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
 
edu.mayo.informatics.lexgrid.convert.validator - package edu.mayo.informatics.lexgrid.convert.validator
 
edu.mayo.informatics.lexgrid.convert.validator.error - package edu.mayo.informatics.lexgrid.convert.validator.error
 
edu.mayo.informatics.lexgrid.convert.validator.exception - package edu.mayo.informatics.lexgrid.convert.validator.exception
 
edu.mayo.informatics.lexgrid.convert.validator.processor - package edu.mayo.informatics.lexgrid.convert.validator.processor
 
edu.mayo.informatics.lexgrid.convert.validator.resolution - package edu.mayo.informatics.lexgrid.convert.validator.resolution
 
edu.mayo.informatics.resourcereader.core - package edu.mayo.informatics.resourcereader.core
 
edu.mayo.informatics.resourcereader.core.IF - package edu.mayo.informatics.resourcereader.core.IF
 
edu.mayo.informatics.resourcereader.core.impl - package edu.mayo.informatics.resourcereader.core.impl
 
edu.mayo.informatics.resourcereader.obo - package edu.mayo.informatics.resourcereader.obo
 
edu.mayo.informatics.resourcereader.obo.exceptions - package edu.mayo.informatics.resourcereader.obo.exceptions
 
EhCacheWrapper(String, CacheManager) - Constructor for class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
emailErrors() - Method in class org.lexevs.system.constants.SystemVariables
 
EmailTrigger - Class in org.lexevs.logging
Need to implement this class to make the SMTP appender work the way I want it to.
EmailTrigger() - Constructor for class org.lexevs.logging.EmailTrigger
 
emptyCache() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
emptyIterableIfNull(Iterable<T>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
emptyIterableIfNull(T[]) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
enabled - Variable in class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
enableListeners() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
 
enableListeners() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
encrypt(String) - Static method in class org.lexevs.system.utility.CryptoUtility
Encrypts data.
END_TM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
endDocument(XMLEventWriter) - Method in class org.lexgrid.loader.writer.NoClosingRootTagStaxEventItemWriter
 
endElement(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
endElement(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
endElement(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
endRange(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
ENFORCE_INTEGRITY - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
enforcePreviousRevisionId(CodingScheme, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
ENGLISH - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
Entities - Class in org.LexGrid.concepts
A set of entity codes and their lexical descriptions
Entities() - Constructor for class org.LexGrid.concepts.Entities
 
EntitiesDescriptor - Class in org.LexGrid.concepts.descriptors
Class EntitiesDescriptor.
EntitiesDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.EntitiesDescriptor
 
EntitiesUtil - Class in org.LexGrid.custom.concepts
Common utility class to support concepts and related model objects.
EntitiesUtil() - Constructor for class org.LexGrid.custom.concepts.EntitiesUtil
 
ENTITY - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The ENTITY.
Entity - Class in org.LexGrid.concepts
A set of lexical assertions about the intended meaning of a particular entity code.
Entity() - Constructor for class org.LexGrid.concepts.Entity
 
ENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_ASSOCIATION_TO_D_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_ASSOCIATION_TO_DATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_ASSOCIATION_TO_E_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_ASSOCIATION_TO_ENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_ASSOCIATION_TO_ENTITY_TRANSITIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_BATCH_INSERT_ERROR_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
The ENTIT y_ batc h_ inser t_ erro r_ code.
ENTITY_CODE_NAMESPACE_PARAM - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The ENTIT y_ cod e_ namespac e_ param.
ENTITY_CODE_PARAM - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The ENTIT y_ cod e_ param.
ENTITY_DESCRIPTION_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The ENTIT y_ descriptio n_ property.
ENTITY_ID_PARAM - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The ENTIT y_ i d_ param.
ENTITY_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The ENTIT y_ namespace.
ENTITY_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
ENTITY_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_PROPERTY_LINKS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_PROPERTY_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_TYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITY_UID_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The STEMMIN g_ propert y_ valu e_ field.
EntityAsscToEntityMrsatQualsProcessor<I> - Class in org.lexgrid.loader.processor
 
EntityAsscToEntityMrsatQualsProcessor() - Constructor for class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
EntityAssnsToEntityDataTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
EntityAssnsToEntityDataTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
 
EntityAssnsToEntityProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityAssnsToEntityProcessor.
EntityAssnsToEntityProcessor() - Constructor for class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
EntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy - Enum in org.lexgrid.loader.processor
 
EntityAssnToEQualsListProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityAssnToEQualsListProcessor.
EntityAssnToEQualsListProcessor() - Constructor for class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
EntityAssnToEQualsProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityAssnToEQualsProcessor.
EntityAssnToEQualsProcessor() - Constructor for class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
EntityBatchingIndexCreator - Class in org.lexevs.dao.index.indexer
The Class EntityBatchingIndexCreator.
EntityBatchingIndexCreator() - Constructor for class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
EntityBatchInsertError - Class in edu.mayo.informatics.lexgrid.convert.inserter.error
The Class EntityBatchInsertError.
EntityBatchInsertError(EntityBatchInsertError.EntityBatchInsertErrorItem) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
Instantiates a new entity batch insert error.
EntityBatchInsertError(Object, Exception) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
 
EntityBatchInsertError.EntityBatchInsertErrorItem - Class in edu.mayo.informatics.lexgrid.convert.inserter.error
The Class EntityBatchInsertErrorItem.
EntityBatchInsertErrorItem(String, String, String, List<Entity>) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
Instantiates a new entity batch insert error item.
EntityBatchInsertEvent - Class in org.lexevs.dao.database.service.event.entity
The Class EntityBatchInsertEvent.
EntityBatchInsertEvent(String, String, List<? extends Entity>) - Constructor for class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Instantiates a new entity batch insert event.
EntityBatchInsertResolver - Class in edu.mayo.informatics.lexgrid.convert.inserter.resolution
 
EntityBatchInsertResolver() - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver
 
EntityBatchInsertResolver.EntityExceptionPair - Class in edu.mayo.informatics.lexgrid.convert.inserter.resolution
 
EntityCodeAndCodingSchemeResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface EntityCodeAndCodingSchemeResolver.
entityCodeOrAssociationId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
entityCodeOrAssociationName - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
entityCodeOrEntityId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
entityCodeOrId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
EntityCodeResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface EntityCodeResolver.
EntityDao - Interface in org.lexevs.dao.database.access.entity
The Interface EntityDao.
EntityDao - Interface in org.lexevs.dao.index.access.entity
The Interface EntityDao.
entityDescription - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is SOS or MAPSETNAME use corresponding ATV from MRSAT
entityDescription - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
EntityDescription - Class in org.LexGrid.commonTypes
The description of a resource.
EntityDescription() - Constructor for class org.LexGrid.commonTypes.EntityDescription
 
EntityDescriptionDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class EntityDescriptionDescriptor.
EntityDescriptionDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
 
EntityDescriptionPostSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
Entity description sort which implements the Sort interface.
EntityDescriptionPostSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionPostSort
 
EntityDescriptionResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface EntityDescriptionResolver.
EntityDescriptionSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
Entity description sort which implements the Sort interface.
EntityDescriptionSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort
 
EntityDescriptionSort.CodeToReturnEntityDescritpionSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
 
EntityDescriptionSort.ResolvedConceptReferenceEntityDescritpionSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
 
EntityDescriptor - Class in org.LexGrid.concepts.descriptors
Class EntityDescriptor.
EntityDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.EntityDescriptor
 
EntityEditDialog - Class in org.LexGrid.LexBIG.gui.edit
 
EntityEditDialog(LB_GUI, String, boolean, String, Shell, DialogHandler, ResolvedConceptReference) - Constructor for class org.LexGrid.LexBIG.gui.edit.EntityEditDialog
 
EntityExceptionPair(Entity, Exception) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver.EntityExceptionPair
 
EntityFactory - Class in org.LexGrid.custom.concepts
 
EntityFactory() - Constructor for class org.LexGrid.custom.concepts.EntityFactory
 
EntityIndexer - Interface in org.lexevs.dao.index.indexer
 
EntityIndexService - Interface in org.lexevs.dao.index.service.entity
The Interface EntityIndexService.
EntityInsertOrRemoveEvent - Class in org.lexevs.dao.database.service.event.entity
The Class EntityInsertOrRemoveEvent.
EntityInsertOrRemoveEvent() - Constructor for class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Instantiates a new entity insert or remove event.
EntityInsertOrRemoveEvent(String, String, Entity) - Constructor for class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Instantiates a new entity insert or remove event.
entityInUse(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
entityInUse(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
entityInUse(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
EntityKeyResolver - Interface in org.lexgrid.loader.database.key
 
EntityListIterator - Interface in org.LexGrid.LexBIG.Utility.Iterators
 
EntityNamespaceResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface EntityNamespaceResolver.
entityPageSize - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
The entity page size.
EntityProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityProcessor.
EntityProcessor() - Constructor for class org.lexgrid.loader.processor.EntityProcessor
 
EntityProcessorTest - Class in org.lexgrid.loader.processor
The Class EntityProcessorTest.
EntityProcessorTest() - Constructor for class org.lexgrid.loader.processor.EntityProcessorTest
 
EntityPropertyEntityDescriptionResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class EntityPropertyEntityDescriptionResolver.
EntityPropertyEntityDescriptionResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.EntityPropertyEntityDescriptionResolver
 
EntityPropertyKeyResolver - Interface in org.lexgrid.loader.database.key
 
EntityPropertyListIdAddingDecorator<I> - Class in org.lexgrid.loader.processor.decorator
The Class EntityPropertyListIdAddingDecorator.
EntityPropertyListIdAddingDecorator(ItemProcessor<List<I>, List<ParentIdHolder<Property>>>) - Constructor for class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
Instantiates a new entity property list id adding decorator.
EntityPropertyListProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityPropertyListProcessor.
EntityPropertyListProcessor() - Constructor for class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
EntityPropertyProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityPropertyProcessor.
EntityPropertyProcessor() - Constructor for class org.lexgrid.loader.processor.EntityPropertyProcessor
 
EntityPropertyPropertyComparator - Class in org.lexgrid.loader.umls.data.property
The Class PresentationPropertyComparator.
EntityPropertyPropertyComparator() - Constructor for class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
 
EntityPropertyPropertyComparatorTest - Class in org.lexgrid.loader.umls.data.property
The Class EntityPropertyPropertyComparatorTest.
EntityPropertyPropertyComparatorTest() - Constructor for class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparatorTest
 
EntityPropertyQualifierAndSourceAddingDecorator<I> - Class in org.lexgrid.loader.processor.decorator
 
EntityPropertyQualifierAndSourceAddingDecorator(EntityPropertyProcessor<I>) - Constructor for class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
EntityPropertyQualifierProcessor<I> - Class in org.lexgrid.loader.processor
The Class EntityPropertyQualifierProcessor.
EntityPropertyQualifierProcessor() - Constructor for class org.lexgrid.loader.processor.EntityPropertyQualifierProcessor
 
EntityPropertyWriter - Class in org.lexgrid.loader.writer
 
EntityPropertyWriter() - Constructor for class org.lexgrid.loader.writer.EntityPropertyWriter
 
EntityReference - Class in org.LexGrid.valueSets
A reference to an entityCode and/or one or more entityCodes that have a relationship to the specified entity code.
EntityReference() - Constructor for class org.LexGrid.valueSets.EntityReference
 
EntityReferenceContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Entity Reference Contents SWT Table.
EntityReferenceContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceContentProvider
 
EntityReferenceDescriptor - Class in org.LexGrid.valueSets.descriptors
Class EntityReferenceDescriptor.
EntityReferenceDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
 
EntityReferenceLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Entry SWT table view.
EntityReferenceLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
EntityReferenceView - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
EntityReferenceView(ValueSetDefinitionDetails, Shell, ValueSetDefinition, DefinitionEntry) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceView
 
EntityReferencingAssociatedConcept - Class in org.lexevs.dao.database.ibatis.codednodegraph.model
 
EntityReferencingAssociatedConcept() - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.model.EntityReferencingAssociatedConcept
 
EntityResolver<I> - Interface in org.lexgrid.loader.processor.support
The Interface EntityResolver.
EntityReviseEvent - Class in org.lexevs.dao.database.service.event.revision
The Class EntityReviseEvent.
EntityReviseEvent() - Constructor for class org.lexevs.dao.database.service.event.revision.EntityReviseEvent
 
EntityService - Interface in org.lexevs.dao.database.service.entity
The Interface EntityService.
EntityToRVSTransformer - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
EntityToRVSTransformer(String, String, String, String, AbsoluteCodingSchemeVersionReference, LexBIGService, String, String, SupportedCodingScheme, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
EntityToRVSTransformerTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
EntityToRVSTransformerTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformerTest
 
EntityToVSDTransformer - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
EntityToVSDTransformer(String, String, String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
EntityToVSDTransFormerTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
EntityToVSDTransFormerTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
entityType - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITYTYPE_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITYTYPE_CONCEPT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTITYTYPE_INSTANCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
entityTypeColDef - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
EntityTypes - Enum in org.LexGrid.commonTypes.types
A list of entityTypes to be used where appropriate.
EntityTypesDescriptor - Class in org.LexGrid.commonTypes.types.descriptors
Class EntityTypesDescriptor.
EntityTypesDescriptor() - Constructor for class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
 
EntityUpdateEvent - Class in org.lexevs.dao.database.service.event.entity
The Class EntityUpdateEvent.
EntityUpdateEvent() - Constructor for class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Instantiates a new entity update event.
EntityUpdateEvent(String, String, Entity, Entity) - Constructor for class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Instantiates a new entity update event.
EntityVersion - Class in org.LexGrid.versions
A static snapshot of the given entity.NOTE: This type is here for backwards compatbility with the LexBIG API, and is not otherwise used in the current LexGrid model.
EntityVersion() - Constructor for class org.LexGrid.versions.EntityVersion
 
EntityVersionDescriptor - Class in org.LexGrid.versions.descriptors
Class EntityVersionDescriptor.
EntityVersionDescriptor() - Constructor for class org.LexGrid.versions.descriptors.EntityVersionDescriptor
 
EntityWriter - Class in org.lexgrid.loader.writer
 
EntityWriter() - Constructor for class org.lexgrid.loader.writer.EntityWriter
 
EntityWriterTest - Class in org.lexgrid.loader.writer
 
EntityWriterTest() - Constructor for class org.lexgrid.loader.writer.EntityWriterTest
 
ENTRY_STATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ATTRIBUTE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ATTRIBUTE - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
ENTRY_STATE_TYPE_CODINGSCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_CODINGSCHEMEPROP - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ENTITYASSNSTODATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ENTITYASSNSTOENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_ENTITYPROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_MAPPING - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_PICKLIST - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_PICKLISTENTRY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_VALUEDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRY_STATE_TYPE_VALUEDOMAINENTRY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
ENTRYID_INCREMENT - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
EntryState - Class in org.LexGrid.versions
Represents a change that occurred between the current state of the versionable entry and an immediately preceeding state of the same entry.
EntryState() - Constructor for class org.LexGrid.versions.EntryState
 
EntryStateDescriptor - Class in org.LexGrid.versions.descriptors
Class EntryStateDescriptor.
EntryStateDescriptor() - Constructor for class org.LexGrid.versions.descriptors.EntryStateDescriptor
 
entryStateExists(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
entryStateExists(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
entryStateExists(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
entryStateExists(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
entryStateExists(String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
entryStateExists(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
entryStateExists(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Method finds if the given entryState already exists.
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
entryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
entryStateExists(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
entryStateExists(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
entryStateExists(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
entryStateExists(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
entryStateExists(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
entryStateExists(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
entryStateExists(RevisableAbstractDatabaseService.ParentUidReferencingId, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
entryStateExists(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
entryStateExists(I, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Entry state exists.
entryStateExists(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
entryStateId_ - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
EntryStateTypeClassifier - Class in org.lexevs.dao.database.constants.classifier.property
 
EntryStateTypeClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.property.EntryStateTypeClassifier
 
enumerateAbsoluteCodingSchemeVersionReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method enumerateAbsoluteCodingSchemeVersionReference.
enumerateAnyObject() - Method in class org.LexGrid.builtins.TsAnyType
Method enumerateAnyObject.
enumerateAnyObject() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method enumerateAnyObject.
enumerateAssoc() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method enumerateAssoc.
enumerateAssociatedConcept() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method enumerateAssociatedConcept.
enumerateAssociatedConcept() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
enumerateAssociatedData() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method enumerateAssociatedData.
enumerateAssociation() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method enumerateAssociation.
enumerateAssociationEntity() - Method in class org.LexGrid.concepts.Entities
Method enumerateAssociationEntity.
enumerateAssociationNames() - Method in class org.LexGrid.naming.SupportedHierarchy
Method enumerateAssociationNames.
enumerateAssociationPredicate() - Method in class org.LexGrid.relations.Relations
Method enumerateAssociationPredicate.
enumerateAssociationQualification() - Method in class org.LexGrid.relations.AssociatableElement
Method enumerateAssociationQualification.
enumerateChangedEntry() - Method in class org.LexGrid.versions.Revision
Method enumerateChangedEntry.
enumerateCodedNodeReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method enumerateCodedNodeReference.
enumerateCodingScheme() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method enumerateCodingScheme.
enumerateCodingSchemeRendering() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method enumerateCodingSchemeRendering.
enumerateCodingSchemeSummary() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method enumerateCodingSchemeSummary.
enumerateComment() - Method in class org.LexGrid.concepts.Entity
Method enumerateComment.
enumerateConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method enumerateConceptReference.
enumerateContext() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method enumerateContext.
enumerateDefaultPickContext() - Method in class org.LexGrid.valueSets.PickListDefinition
Method enumerateDefaultPickContext.
enumerateDefinition() - Method in class org.LexGrid.concepts.Entity
Method enumerateDefinition.
enumerateDefinitionEntry() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method enumerateDefinitionEntry.
enumerateEntity() - Method in class org.LexGrid.concepts.Entities
Method enumerateEntity.
enumerateEntityType() - Method in class org.LexGrid.concepts.Entity
Method enumerateEntityType.
enumerateEntityType() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method enumerateEntityType.
enumerateEntityVersions() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method enumerateEntityVersions.
enumerateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method enumerateEntry.
enumerateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method enumerateEntry.
enumerateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method enumerateEntry.
enumerateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method enumerateEntry.
enumerateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method enumerateEntry.
enumerateEntry() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method enumerateEntry.
enumerateExtensionDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method enumerateExtensionDescription.
enumerateLocalName() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method enumerateLocalName.
enumerateLocalName() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method enumerateLocalName.
enumerateMetadataProperty() - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method enumerateMetadataProperty.
enumerateModuleDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method enumerateModuleDescription.
enumerateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method enumerateName.
enumerateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method enumerateName.
enumerateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method enumerateName.
enumerateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method enumerateName.
enumerateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method enumerateName.
enumerateNameAndValue() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method enumerateNameAndValue.
enumeratePickContext() - Method in class org.LexGrid.valueSets.PickListEntry
Method enumeratePickContext.
enumeratePickListDefinition() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method enumeratePickListDefinition.
enumeratePickListEntryNode() - Method in class org.LexGrid.valueSets.PickListDefinition
Method enumeratePickListEntryNode.
enumeratePresentation() - Method in class org.LexGrid.concepts.Entity
Method enumeratePresentation.
enumerateProperty() - Method in class org.LexGrid.commonTypes.Properties
Method enumerateProperty.
enumerateProperty() - Method in class org.LexGrid.concepts.Entity
Method enumerateProperty.
enumeratePropertyLink() - Method in class org.LexGrid.concepts.Entity
Method enumeratePropertyLink.
enumeratePropertyQualifier() - Method in class org.LexGrid.commonTypes.Property
Method enumeratePropertyQualifier.
enumerateRelations() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method enumerateRelations.
enumerateRepresentsRealmOrContext() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method enumerateRepresentsRealmOrContext.
enumerateResolvedConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method enumerateResolvedConceptReference.
enumerateResolvedConceptReference() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
enumerateResolvedPickListEntry() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method enumerateResolvedPickListEntry.
enumerateRestrictToContext() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method enumerateRestrictToContext.
enumerateRevision() - Method in class org.LexGrid.versions.EditHistory
Method enumerateRevision.
enumerateSortDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method enumerateSortDescription.
enumerateSource() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method enumerateSource.
enumerateSource() - Method in class org.LexGrid.commonTypes.Property
Method enumerateSource.
enumerateSource() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method enumerateSource.
enumerateSource() - Method in class org.LexGrid.relations.AssociationPredicate
Method enumerateSource.
enumerateSource() - Method in class org.LexGrid.valueSets.PickListDefinition
Method enumerateSource.
enumerateSource() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method enumerateSource.
enumerateSupportedAssociation() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedAssociation.
enumerateSupportedAssociationQualifier() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedAssociationQualifier.
enumerateSupportedCodingScheme() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedCodingScheme.
enumerateSupportedConceptDomain() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedConceptDomain.
enumerateSupportedContainerName() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedContainerName.
enumerateSupportedContext() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedContext.
enumerateSupportedDataType() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedDataType.
enumerateSupportedDegreeOfFidelity() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedDegreeOfFidelity.
enumerateSupportedElement() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method enumerateSupportedElement.
enumerateSupportedEntityType() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedEntityType.
enumerateSupportedHierarchy() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedHierarchy.
enumerateSupportedLanguage() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedLanguage.
enumerateSupportedNamespace() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedNamespace.
enumerateSupportedProperty() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedProperty.
enumerateSupportedPropertyLink() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedPropertyLink.
enumerateSupportedPropertyQualifier() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedPropertyQualifier.
enumerateSupportedPropertyQualifierType() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedPropertyQualifierType.
enumerateSupportedPropertyType() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedPropertyType.
enumerateSupportedRepresentationalForm() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedRepresentationalForm.
enumerateSupportedSortOrder() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedSortOrder.
enumerateSupportedSource() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedSource.
enumerateSupportedSourceRole() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedSourceRole.
enumerateSupportedStatus() - Method in class org.LexGrid.naming.Mappings
Method enumerateSupportedStatus.
enumerateSystemRelease() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method enumerateSystemRelease.
enumerateTag() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method enumerateTag.
enumerateTarget() - Method in class org.LexGrid.relations.AssociationSource
Method enumerateTarget.
enumerateTargetData() - Method in class org.LexGrid.relations.AssociationSource
Method enumerateTargetData.
enumerateUsageContext() - Method in class org.LexGrid.commonTypes.Property
Method enumerateUsageContext.
enumerateUsageContext() - Method in class org.LexGrid.relations.AssociatableElement
Method enumerateUsageContext.
enumerateValueSetDefinition() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method enumerateValueSetDefinition.
equalReferences(ConceptReference, ConceptReference) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Determine whether two concept references refer to the same thing in the context of a single coding scheme!
equals(Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
equals(Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
equals(Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
equals(Object) - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
equals(Object) - Method in class org.lexevs.dao.database.access.association.model.DefinedNode
 
equals(Object) - Method in class org.lexevs.dao.database.access.association.model.Node
 
equals(Object) - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
 
equals(Object) - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Sort
 
equals(Object) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
 
equals(Object) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
 
equals(Object) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
equals(T, T) - Method in interface org.lexevs.dao.database.utility.DaoUtility.Equality
 
equals(T, T, DaoUtility.Equality<T>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
equals(T, T) - Method in class org.lexevs.dao.database.utility.DaoUtility.EqualsEquality
 
equals(Object) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry.CodingSchemeUriVersionPair
 
equals(Object) - Method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
 
equals(Object) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
equals(Object) - Method in class org.lexevs.registry.model.Registry
 
equals(Object) - Method in class org.lexevs.registry.model.RegistryEntry
 
equals(Object) - Method in class org.lexevs.system.utility.CodingSchemeReference
 
equals(Object) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
 
equals(Object) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
equals(Object) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
equals(Object) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
equals(Object) - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.loaders.helpers.CategoryNameValue
 
equals(Object) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
equals(Object) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
equals(Object) - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
equals(Object) - Method in class org.lexgrid.loader.wrappers.Pair
 
equals(Object) - Method in class org.lexgrid.loader.wrappers.RelationHolder
 
equals(Object) - Method in class org.lexgrid.loader.wrappers.Triple
 
EqualsEquality() - Constructor for class org.lexevs.dao.database.utility.DaoUtility.EqualsEquality
 
error(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a non-fatal error to the user.
error(String, Throwable) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a non-fatal error to the user
error(String) - Method in class org.lexevs.logging.Logger
 
error(String, Throwable) - Method in class org.lexevs.logging.Logger
 
error(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
error(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
error(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
error(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
error(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
error(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
error(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
error(String) - Method in class org.lexevs.logging.SimpleLogger
 
error(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
error(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
error(SAXParseException) - Method in class org.LexGrid.LexBIG.Impl.helpers.SAXPrintHandler
 
error(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
error(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
error(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a non-fatal error to the user.
error(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a non-fatal error to the user
ErrorCallbackDatabaseServiceFactory - Class in org.lexevs.dao.database.service.error
A factory for creating ErrorCallbackDatabaseService objects.
ErrorCallbackDatabaseServiceFactory() - Constructor for class org.lexevs.dao.database.service.error.ErrorCallbackDatabaseServiceFactory
 
ErrorCallbackInterceptor - Class in org.lexevs.dao.database.service.error
The Class LazyLoadingCodeToReturnInterceptor.
ErrorCallbackInterceptor(ErrorCallbackListener) - Constructor for class org.lexevs.dao.database.service.error.ErrorCallbackInterceptor
Instantiates a new dao validating interceptor.
ErrorCallbackListener - Interface in org.lexevs.dao.database.service.error
The listener interface for receiving errorCallback events.
ErrorCallbackListenerFactory - Class in edu.mayo.informatics.lexgrid.convert.errorcallback
 
ErrorCallbackListenerFactory() - Constructor for class edu.mayo.informatics.lexgrid.convert.errorcallback.ErrorCallbackListenerFactory
 
ErrorHandlingService - Annotation Type in org.lexevs.dao.database.service.error
The Interface ErrorHandlingService.
ErrorReportingDataSourceDecorator - Class in org.lexevs.dao.database.datasource
 
ErrorReportingDataSourceDecorator(DataSource) - Constructor for class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
ErrorResolutionReport - Class in edu.mayo.informatics.lexgrid.convert.validator.resolution
The Class ErrorResolutionReport.
ErrorResolutionReport(ErrorResolutionReport.ResolutionStatus, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
Instantiates a new error resolution report.
ErrorResolutionReport.ResolutionStatus - Enum in edu.mayo.informatics.lexgrid.convert.validator.resolution
The Enum ResolutionStatus.
ErrorResolvingErrorCallbackListener - Class in edu.mayo.informatics.lexgrid.convert.errorcallback
 
ErrorResolvingErrorCallbackListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.errorcallback.ErrorResolvingErrorCallbackListener
 
errors - Variable in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver
 
escapeLdapCode(String) - Static method in class org.LexGrid.util.sql.DBUtility
 
escapeLdapDN(String, boolean) - Static method in class org.LexGrid.util.sql.DBUtility
 
escapeLdapDN(String) - Static method in class org.LexGrid.util.sql.DBUtility
 
escapeQuotedComma(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
This function replaces comma's that are in quoted sentences with a @escapedcomma@ tag.
estimateMappingNumber(ResolvedConceptReferencesIterator, ResolvedConceptReferencesIterator, ResolvedConceptReferencesIterator) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
EvsTreeConverter - Interface in org.lexevs.tree.evstree
Deprecated.
EvsTreeConverter - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.evstree
The Interface JsonConverter.
EvsTreeConverterFactory - Class in org.lexevs.tree.evstree
Deprecated.
EvsTreeConverterFactory() - Constructor for class org.lexevs.tree.evstree.EvsTreeConverterFactory
Deprecated.
 
EvsTreeConverterFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.evstree
A factory for creating JsonConverter objects.
EvsTreeConverterFactory() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.EvsTreeConverterFactory
 
ExactMatchSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class ExactMatchSearch.
ExactMatchSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.ExactMatchSearch
 
excapeSpecialCharacters(String) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
Excape special characters.
EXCLUDES1 - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
EXCLUDES2 - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
execute() - Method in interface org.lexevs.dao.database.access.LexGridSchemaVersionAwareDao.IndividualDaoCallback
Execute.
execute(DaoManager) - Method in interface org.lexevs.dao.database.service.daocallback.DaoCallbackService.DaoCallback
Execute.
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
 
execute(StepContribution, ChunkContext) - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
 
execute(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
execute() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
execute(String, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
execute(String, int[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
execute(String, String[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeBatch() - Method in class org.lexevs.dao.database.ibatis.batch.InOrderOrderingBatchInserterDecorator
 
executeBatch() - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
 
executeBatch() - Method in interface org.lexevs.dao.database.inserter.BatchInserter
Execute batch.
executeBatch() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeInBlockJoinIndexSearcher(BaseLuceneIndexTemplate.ToParentBlockJoinIndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
executeInDaoLayer(DaoCallbackService.DaoCallback<T>) - Method in interface org.lexevs.dao.database.service.daocallback.DaoCallbackService
Execute in dao layer.
executeInDaoLayer(DaoCallbackService.DaoCallback<T>) - Method in class org.lexevs.dao.database.service.daocallback.DaoManagerDaoCallbackService
Execute in dao layer.
executeInIndexReader(BaseLuceneIndexTemplate.IndexReaderCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
executeInIndexReader(BaseLuceneIndexTemplate.IndexReaderCallback<T>) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
executeInIndexReader(BaseLuceneIndexTemplate.IndexReaderCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
executeInIndexReader(BaseLuceneIndexTemplate.IndexReaderCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
executeInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
executeInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
executeInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
executeInIndexSearcher(BaseLuceneIndexTemplate.IndexSearcherCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
executeInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
executeInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
executeInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
executeInIndexWriter(BaseLuceneIndexTemplate.IndexWriterCallback<T>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
executeInTransaction(LexGridSchemaVersionAwareDao.IndividualDaoCallback<T>) - Method in interface org.lexevs.dao.database.access.LexGridSchemaVersionAwareDao
Execute in transaction.
executeInTransaction(LexGridSchemaVersionAwareDao.IndividualDaoCallback<T>) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
 
executeInTransaction(LexGridSchemaVersionAwareDao.IndividualDaoCallback<T>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
executeInTransaction(LexGridSchemaVersionAwareDao.IndividualDaoCallback<T>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
executeInTransaction(LexGridSchemaVersionAwareDao.IndividualDaoCallback<T>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
executeQuery() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeQuery(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeScript(Resource) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Execute script.
executeScript(Resource, String, String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Execute script.
executeScript(String, String, String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
 
executeScript(Resource, String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
 
executeScript(String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Execute script.
executeScript(String, String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
 
executeScript(Resource) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeScript(Resource, String, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeScript(Resource, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeScript(String, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeScript(String, String, String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeScript(String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
executeUpdate() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeUpdate(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeUpdate(String, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeUpdate(String, int[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
executeUpdate(String, String[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
exists(ResolvedConceptReference) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheEhcacheImpl
 
exists(ResolvedConceptReference) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationSourceCacheNoopImpl
 
exists(ResolvedConceptReference) - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationSourceCache
 
exitFailedDescription(JobExecution) - Method in class org.lexgrid.loader.listener.SetupListener
 
expand(TreeItem) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
expandable - Variable in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
expandable - Variable in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
expandableStatusToInt(LexEvsTreeNode.ExpandableStatus) - Method in class org.lexevs.tree.evstree.ChildPagingEvsTreeConverter
Deprecated.
Expandable status to int.
expandableStatusToInt(LexEvsTreeNode.ExpandableStatus) - Method in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
Expandable status to int.
expandableStatusToInt(LexEvsTreeNode.ExpandableStatus) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
Expandable status to int.
expandableStatusToInt(LexEvsTreeNode.ExpandableStatus) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
Expandable status to int.
export(AbsoluteCodingSchemeVersionReference, URI) - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Export a CodingScheme resource to a URI destination.
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Export content from the underlying LexGrid repository.
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.OBO_Exporter
Export content from the underlying LexGrid repository.
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.OWL_Exporter
Export content from the underlying LexGrid repository.
export(AbsoluteCodingSchemeVersionReference, URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
export(AbsoluteCodingSchemeVersionReference, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
exportCodingSchemeData() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportCodingSchemeData() - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
Exporter - Interface in org.LexGrid.LexBIG.Extensions.Export
Defines a class of object used to export content from the underlying LexGrid repository to another repository or file format.
ExporterExtensionShell - Class in org.LexGrid.LexBIG.gui.export
The Class ExporterExtensionShell.
ExporterExtensionShell(LB_GUI, Exporter, AbsoluteCodingSchemeVersionReference) - Constructor for class org.LexGrid.LexBIG.gui.export.ExporterExtensionShell
Instantiates a new loader extension shell.
ExporterExtensionShell(LB_VSD_GUI, Exporter, URI, boolean) - Constructor for class org.LexGrid.LexBIG.gui.export.ExporterExtensionShell
Instantiates a new loader extension shell for exporting value set definition
ExporterExtensionShell(LB_VSD_GUI, Exporter, String) - Constructor for class org.LexGrid.LexBIG.gui.export.ExporterExtensionShell
Instantiates a new loader extension shell for exporting pick list definition.
ExporterMessageDirector - Class in org.LexGrid.LexBIG.Impl.exporters
A message director to redirect messages as necessary for LexBig.
ExporterMessageDirector(String, ProcessStatus) - Constructor for class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
ExportLgXML - Class in org.LexGrid.LexBIG.admin
ExportLgXML Exports content from the repository to a file in the LexGrid canonical XML format.
ExportLgXML() - Constructor for class org.LexGrid.LexBIG.admin.ExportLgXML
 
exportLogDebug(String) - Method in class org.lexevs.logging.Logger
 
exportLogDebug(String) - Method in class org.lexevs.logging.SimpleLogger
 
exportLogDebug(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
exportLogError(String, Throwable) - Method in class org.lexevs.logging.Logger
 
exportLogError(String) - Method in class org.lexevs.logging.Logger
 
exportLogError(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
exportLogError(String) - Method in class org.lexevs.logging.SimpleLogger
 
exportLogError(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
exportLogError(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
exportLogWarn(String, Throwable) - Method in class org.lexevs.logging.Logger
 
exportLogWarn(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
exportLogWarn(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
ExportOBO - Class in org.LexGrid.LexBIG.admin
Exports content from the repository to a file in the Open Biomedical Ontologies (OBO) format.
ExportOBO() - Constructor for class org.LexGrid.LexBIG.admin.ExportOBO
 
ExportOwlRdf - Class in org.LexGrid.LexBIG.admin
 
ExportOwlRdf() - Constructor for class org.LexGrid.LexBIG.admin.ExportOwlRdf
 
exportPickListDefinition(String, URI) - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Export a Pick List Definition resource to a URI destination.
exportPickListDefinition(String, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Export content of PickList Definition from the underlying LexGrid repository.
exportPickListDefinition(String, URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
exportPickListDefinition(String, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportPickListDefinition(String, String, boolean, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
exportPickListDefinition(String, String, boolean, boolean) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Exports the pick list definition in LexGrid XML format.
exportPickListDefinitionData() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
ExportStatus - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Reports the state of LexBIG export operations.
ExportStatus() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExportStatus
 
ExportStatusDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class ExportStatusDescriptor.
ExportStatusDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
 
exportToLocation(File) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.ExportUtility
 
ExportUtility - Class in org.LexGrid.LexBIG.Impl.dataAccess
This class assists in exporting LexGrid config information.
ExportUtility() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.ExportUtility
 
exportValueSetDefinition(URI, String, URI) - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Export a Value Set Definition resource to a URI destination.
exportValueSetDefinition(URI, String, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Export Value Set Definition from the underlying LexGrid repository.
exportValueSetDefinition(URI, String, URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
exportValueSetDefinition(URI, String, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportValueSetDefinition(URI, String, String, boolean, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetDefinition(URI, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetDefinition(ValueSetDefinition) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetDefinition(URI, String, String, boolean, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Export value set definition to LexGrid canonical XML format.
exportValueSetDefinition(URI, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Exports Value Set Definition to StringBuffer in LexGrid XML format.
exportValueSetDefinition(ValueSetDefinition) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Exports supplied Value Set Definition to StringBuffer in LexGrid XML format.
exportValueSetDefinitionData() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportValueSetResolution(URI, String, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Exports expanded contents of Value Set Definition from the underlying LexGrid repository.
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Exports expanded contents of supplied Value Set Definition object.
exportValueSetResolution(URI, String, URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
exportValueSetResolution(URI, String, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportValueSetResolution(URI, String, URI, AbsoluteCodingSchemeVersionReferenceList, String, boolean, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, URI, AbsoluteCodingSchemeVersionReferenceList, String, boolean, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, AbsoluteCodingSchemeVersionReferenceList, String, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetResolution(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
exportValueSetResolution(URI, String, URI, AbsoluteCodingSchemeVersionReferenceList, String, boolean, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Exports contents of Value Set Definition as Coding Scheme in LexGrid canonical XML format.
exportValueSetResolution(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolves and Exports contents of Value Set Resolution as Coding Scheme in LexGrid canonical XML format.
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, URI, AbsoluteCodingSchemeVersionReferenceList, String, boolean, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolve and Exports contents of supplied Value Set Definition object as Coding Scheme in LexGrid canonical XML format.
exportValueSetResolution(ValueSetDefinition, HashMap<String, ValueSetDefinition>, AbsoluteCodingSchemeVersionReferenceList, String, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolves and Exports contents of supplied Value Set Definition object as Coding Scheme in LexGrid canonical XML format.
exportValueSetResolutionData() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
exportValueSetResolutionDataToWriter(ValueSetDefinition, ResolvedValueSetCodedNodeSet, LgMessageDirectorIF) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Generate LexGrid Coding Scheme object for the Value Set Resolution
Extendable - Interface in org.LexGrid.LexBIG.Extensions
Marks a class as an extension to the LexBIG application programming interface.
EXTENSION_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.ApproxNumOfConceptsPostProcessor
The EXTENSIO n_ name.
EXTENSION_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
The EXTENSION Name.
EXTENSION_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
The EXTENSION Name
EXTENSION_NAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
The EXTENSION Name.
ExtensionDescription - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Describes an add-on module registered to the LexBIG environment.
ExtensionDescription() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
 
ExtensionDescriptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class ExtensionDescriptionDescriptor.
ExtensionDescriptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
 
ExtensionDescriptionList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class ExtensionDescriptionList.
ExtensionDescriptionList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
ExtensionDescriptionListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class ExtensionDescriptionListDescriptor.
ExtensionDescriptionListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
 
ExtensionLoadingListenerRegistry - Class in org.lexevs.dao.database.service.event.registry
The Class ExtensionLoadingListenerRegistry.
ExtensionLoadingListenerRegistry() - Constructor for class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
 
ExtensionRegistry - Interface in org.LexGrid.LexBIG.Extensions
Allows registration and lookup of implementors for extensible pieces of the LexBIG architecture.
ExtensionRegistryImpl - Class in org.LexGrid.LexBIG.Impl.Extensions
Implementation of the LexGrid Extension Registry.
ExternalResolvedValueSetIndexingTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
ExternalResolvedValueSetIndexingTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
ExternalResolvedValueSetIndexService - Class in org.lexgrid.resolvedvalueset.impl
 
ExternalResolvedValueSetIndexService() - Constructor for class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
extractDataFromDB(String, Map, String, String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Runs SQL Statement "SELECT" with supplied attributes and where clause
extractTerms(Set<Term>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 

F

FactoryBeanReader<T> - Class in org.lexgrid.loader.reader
The Class FactoryBeanReader.
FactoryBeanReader() - Constructor for class org.lexgrid.loader.reader.FactoryBeanReader
 
FAIL_ON_ERROR - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
FAIL_ON_ERROR_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
FAIL_ON_ERROR_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
fatal(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a fatal error to the user.
fatal(String, Throwable) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a fatal error to the user.
fatal(String) - Method in class org.lexevs.logging.Logger
 
fatal(String, Throwable) - Method in class org.lexevs.logging.Logger
 
fatal(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
fatal(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
fatal(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
fatal(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
fatal(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
fatal(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
fatal(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
fatal(String) - Method in class org.lexevs.logging.SimpleLogger
 
fatal(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
fatal(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
fatal(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
fatal(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
fatal(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a fatal error to the user.
fatal(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a fatal error to the user.
FATAL_ERROR_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.validator.error.FatalError
The FATA l_ erro r_ code.
FATAL_ERROR_DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.validator.error.FatalError
The FATA l_ erro r_ description.
fatalAndThrowException(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a fatal error to the user - and then throw an exception.
fatalAndThrowException(String, Throwable) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a fatal error to the user - and then throw an exception.
fatalAndThrowException(String) - Method in class org.lexevs.logging.Logger
 
fatalAndThrowException(String, Throwable) - Method in class org.lexevs.logging.Logger
 
fatalAndThrowException(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
fatalAndThrowException(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
fatalAndThrowException(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
fatalAndThrowException(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
fatalAndThrowException(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
fatalAndThrowException(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
fatalAndThrowException(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
fatalAndThrowException(String) - Method in class org.lexevs.logging.SimpleLogger
 
fatalAndThrowException(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
fatalAndThrowException(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
fatalAndThrowException(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
fatalAndThrowException(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
fatalAndThrowException(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a fatal error to the user - and then throw an exception.
fatalAndThrowException(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a fatal error to the user - and then throw an exception.
fatalError(SAXParseException) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
fatalError(SAXParseException) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
FatalError - Class in edu.mayo.informatics.lexgrid.convert.validator.error
The Class FatalError.
FatalError(Object, Exception) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.FatalError
Instantiates a new fatal error.
fatalError(SAXParseException) - Method in class org.LexGrid.LexBIG.Impl.helpers.SAXPrintHandler
 
fieldAdded(String, Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
fieldAdded(String, Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
fieldAdded(String, Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
fieldAdded(String, Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
fieldAdded(String, Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
FieldsAsString(String, Field[], DatabaseRecord, int[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
fieldString(String, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
fieldsValid() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseRecord
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
fieldsValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
fieldsValid(DatabaseRecord, int[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
FieldTruncatingWriterDecorator<O> - Class in org.lexgrid.loader.writer.decorator
The Class FieldTruncatingWriterDecorator.
FieldTruncatingWriterDecorator(ItemWriter<O>) - Constructor for class org.lexgrid.loader.writer.decorator.FieldTruncatingWriterDecorator
Instantiates a new field truncating writer decorator.
FileBase - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Common bits for formats that read or write from a file.
FileBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
FileFormatter - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor
 
FileFormatter() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor.FileFormatter
 
fileLocation - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
fileLocation - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
filename() - Method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
filePath - Variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
FileSystemCachingValueSetDefinitionCompilerDecorator - Class in org.lexgrid.valuesets.helper.compiler
The Class FileSystemCachingValueSetDefinitionCompilerDecorator.
FileSystemCachingValueSetDefinitionCompilerDecorator(ValueSetDefinitionCompiler, VSDServiceHelper) - Constructor for class org.lexgrid.valuesets.helper.compiler.FileSystemCachingValueSetDefinitionCompilerDecorator
Instantiates a new caching value set definition compiler decorator.
Filter - Interface in org.LexGrid.LexBIG.Extensions.Query
Allows for additional filtering of query results.
filter(List<T>) - Method in interface org.lexgrid.loader.processor.support.ListFilter
Filter.
filter(List<Mrconso>) - Method in class org.lexgrid.loader.umls.processor.support.filter.UniqueCuiListFilter
 
filterList(List<AssociatedConcept>) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
 
FilterParser - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util
 
FilterParser() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.FilterParser
 
finalize() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
finalize() - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
finalize() - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
finalize() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
finalize() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayFilterResult
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiResolvedValueSetLoaderImpl
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
finalize() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
findAssociationEntityInCodingScheme(String, String, Entities) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
findAssociationEntityInDatabase(String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
FindCodesForDescription - Class in org.LexGrid.LexBIG.example
Example showing how to find codes matching descriptive text.
FindCodesForDescription() - Constructor for class org.LexGrid.LexBIG.example.FindCodesForDescription
 
FindConcept - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FindDescriptionForCode - Class in org.LexGrid.LexBIG.example
Example showing how to find the entity description assigned to a specific code.
FindDescriptionForCode() - Constructor for class org.LexGrid.LexBIG.example.FindDescriptionForCode
 
findMultiValueOption(String, List<MultiValueOption<T>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
findNextChar(char) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Find next char.
findNodeInTree(String) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Find node in tree.
findNodeInTree(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Find node in tree.
findOption(String, List<Option<T>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
findOption(String, Class<T>, List<Option<?>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
FindPropsAndAssocForCode - Class in org.LexGrid.LexBIG.example
Example showing how to find concept properties and associations based on a code.
FindPropsAndAssocForCode() - Constructor for class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
 
FindRelatedCodes - Class in org.LexGrid.LexBIG.example
Example showing how to find all concepts codes related to another code with distance 1.
FindRelatedCodes() - Constructor for class org.LexGrid.LexBIG.example.FindRelatedCodes
 
FindRelatedCodesWithPropertyLinks - Class in org.LexGrid.LexBIG.example
Example showing how to find all concepts codes related to another code with distance 1, plus the Property Link relations.
FindRelatedCodesWithPropertyLinks() - Constructor for class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
 
FindRelatedNodesForTermAndAssoc - Class in org.LexGrid.LexBIG.example
Example showing how to find all endpoints of a named association for which the given term matches as source or target.
FindRelatedNodesForTermAndAssoc() - Constructor for class org.LexGrid.LexBIG.example.FindRelatedNodesForTermAndAssoc
 
findTypedOption(String, List<T>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
Find typed option.
FindUMLSContextsForCUI - Class in org.LexGrid.LexBIG.example
NOTE: This example is intended to run only against code systems representing the entire Metathesaurus.
FindUMLSContextsForCUI() - Constructor for class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
 
FindUMLSContextsForCUI.TreeItem - Class in org.LexGrid.LexBIG.example
Inner class to hold tree items for printout.
finished() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
Called on the event dispatching thread (not on the worker thread) after the construct method has returned.
finishLogConfig(SystemVariables) - Method in class org.lexevs.logging.Logger
Finish log config.
fireCodingSchemeInsertErrorEvent(CodingScheme, T) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire coding scheme insert error event.
fireCodingSchemeUpdateEvent(String, String, CodingScheme, CodingScheme) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire coding scheme update event.
fireEntityReviseEvent(EntityReviseEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire entity revise event.
fireEntityUpdateEvent(EntityUpdateEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire entity update event.
fireNodeAddedEvent(LexEvsTreeNode) - Method in class org.lexevs.tree.listener.NodeAddedListenerSupport
Deprecated.
Fire node added event.
fireNodeAddedEvent(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListenerSupport
Fire node added event.
firePostBatchEntityInsertEvent(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post batch entity insert event.
firePostCodingSchemeInsertEvent(CodingScheme) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post coding scheme insert event.
firePostEntityInsertEvent(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post entity insert event.
firePostEntityRemoveEvent(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post entity remove event.
firePostPropertyInsertEvent(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post property insert event.
firePostPropertyRemoveEvent(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire post property remove event.
firePreBatchAssociationInsertEvent(AssociationBatchInsertEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire pre batch association insert event.
firePreBatchEntityInsertEvent(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire pre batch entity insert event.
firePreCodingSchemeInsertEvent(CodingScheme) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire coding scheme insert event.
firePreEntityInsertEvent(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire pre entity insert event.
firePreEntityRemoveEvent(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire pre entity remove event.
firePropertyUpdateEvent(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Fire property update event.
fireRemoveCodingSchemeResourceFromSystemEvent(String, String) - Method in class org.lexevs.system.event.SystemEventSupport
Fire coding scheme insert event.
fireTagUpdateEvent(String, RegistryEntry) - Method in class org.lexevs.registry.event.RegistryEventSupport
Fire tag update event.
FIRST_CHARACTER - Static variable in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
The FIRS t_ character.
FLOAT - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
flushCache() - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
FMA2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FMA2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
FMA2LGDynamicMapHolders - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FMA2LGDynamicMapHolders() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
FMA2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FMA2LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGMain
 
FMA2LGStaticMapHolders - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FMA2LGStaticMapHolders() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGStaticMapHolders
 
FMA2LGUtils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.fma
 
FMA2LGUtils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
FMA_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
focusCode(String, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
focusCode(String, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
folderLocation_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
folderLocation_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
FORCE_FORMAT_B - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
FORCE_FORMAT_B_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
FORMAL_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
FORMAL_NAME - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
FORMAL_NAME_PROPERTY - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The FORMA l_ nam e_ property.
formalName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
FORMAT_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
formatMemStat(long) - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Static method for changing a long representing memory size to a human friendly string
formatOrPresentationFormat - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
formatTimeDiff(long) - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Used to convert the time difference between snapshots to a human readable format
fromexpr - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
fromid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
value of FROMID column from MRMAP.RRF
fromres - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
FROMRSAB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
FROMRSAB - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
fromrule - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
fromsid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
fromtype - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
fromValue(String) - Static method in enum org.LexGrid.commonTypes.types.EntityTypes
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.commonTypes.types.PropertyTypes
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.valueSets.types.DefinitionOperator
Method fromValue.
fromValue(String) - Static method in enum org.LexGrid.versions.types.ChangeType
Method fromValue.
FROMVSAB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
FROMVSAB - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 

G

GAssociation - Class in org.LexGrid.LexBIG.Impl.helpers.graph
Association object to help in constructing the graph.
GAssociation(GAssociationInfo) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
GAssociationComparator - Class in org.LexGrid.LexBIG.Impl.helpers.graph
Deprecated.
GAssociationComparator(SortOptionList) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationComparator
Deprecated.
 
GAssociationInfo - Class in org.LexGrid.LexBIG.Impl.helpers.graph
AssociationInfo object to assist in building the graph.
GAssociationInfo(String, String, String, String, String, Boolean) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
GENERATED_ID_PREFIX - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
 
generateDatatypeID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Constructs a new datatype id with the given integer suffix.
generateDatatypeID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Constructs a new datatype id with the given integer suffix.
generateDatatypeInstanceID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Constructs a new datatype instance id (e.g., instance of xsd:int is "24") with the given integer suffix.
generateDatatypeInstanceID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Constructs a new datatype instance id (e.g., instance of xsd:int is "24") with the given integer suffix.
generateKey(String...) - Method in class org.lexgrid.loader.data.association.AbstractReproducibleIdResolver
Generate key.
generateMD5() - Method in class org.lexgrid.valuesets.helper.ValueSetResolutionMD5Generator
 
generateNextDatabasePrefix(String) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
generateNextDatabasePrefix(String) - Method in interface org.lexevs.dao.database.prefix.NextDatabasePrefixGenerator
Generate next database prefix.
generatePropertyID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Constructs a new property id with the given integer suffix.
generatePropertyID(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Constructs a new property id with the given integer suffix.
generateReverseNameForAssociation(String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Returns a string which is generated by prepending "reverse_" to the forward_name provided.
generateStartingCyclingPrefix() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Generate starting cycling prefix.
generateUniqueKey(String[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Generates a unique but reproducible key based on the given base of string values.
generateUniqueKey(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Generates a unique but random key, using the given integer as seed.
generator_ - Variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The generator_.
GENERIC - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
GENERIC - Static variable in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
GenericExtension - Interface in org.LexGrid.LexBIG.Extensions.Generic
The generic extension class.
GenericListWriter - Class in org.lexgrid.loader.writer
The Class GenericListWriter.
GenericListWriter() - Constructor for class org.lexgrid.loader.writer.GenericListWriter
 
GenericSQLModifier - Class in org.LexGrid.util.sql
A class to read my quasi-sql and convert it to database specific sql.
GenericSQLModifier(Connection, boolean) - Constructor for class org.LexGrid.util.sql.GenericSQLModifier
 
GenericSQLModifier(Connection) - Constructor for class org.LexGrid.util.sql.GenericSQLModifier
 
GenericSQLModifier(String, boolean) - Constructor for class org.LexGrid.util.sql.GenericSQLModifier
 
genericURL - Variable in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
get(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.Database
 
get(String) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
get(String) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
get(String) - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
get(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.OptionHolder
 
get() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
Return the value created by the construct method.
get(K) - Method in interface org.lexevs.cache.CacheRegistry.CacheWrapper
 
get(K) - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
get() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory.KeyIncrementerThreadLocal
 
get(String, OntologyFormat) - Static method in class org.lexgrid.exporter.owlrdf.LexRdfMap
 
get(int, int) - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Returns a specific range of items without altering cursor position.
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingResolvedConceptReferenceIterator
 
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetScoreDocIteratorWrapper
 
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
get(int, int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
get(int, int) - Method in interface org.LexGrid.LexBIG.Utility.Iterators.ResolvedConceptReferencesIterator
Return concept references from the underlying list, from the start point (inclusive) to the end point (exclusive).
get(int, int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
get5DigitRandom() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
GET_ALL_HISTORY_PROPERTY_UIDS_OF_PARENT_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GET_ALL_PROPERTIES_OF_PARENT_BY_REVISION_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
GET_ALL_PROPERTIES_OF_PARENT_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The GE t_ al l_ propertie s_ o f_ paren t_ sql.
GET_ALL_PROPERTIES_OF_PARENT_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
GET_ASSOCIATION_ENTITY_BY_CODE_AND_NAMESPACE_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
get_assocToChildMap() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
get_auis() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
get_code() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
GET_CODING_SCHEMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
GET_CONCEPT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
GET_CONTEXT_LIST_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_CONTEXT_LIST_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_CONTEXT_LIST_FROM_HISTORY_BY_PARENT_ENTRYSTATEGUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_CONTEXT_LIST_FROM_HISTORY_BY_PARENT_ENTRYSTATEGUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_DEFINITION_ENTRY_BY_VALUESET_DEFINITION_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_DEFINITION_ENTRY_LIST_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_ENTITIES_BY_UIDS_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTITY_ATTRIBUTES_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTITY_BY_CODE_AND_NAMESPACE_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The GE t_ entit y_ b y_ cod e_ an d_ namespac e_ sql.
GET_ENTITY_BY_ID_AND_REVISION_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTITY_BY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTITY_COUNT_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The GE t_ entit y_ coun t_ sql.
GET_ENTITY_UID_BY_CODE_AND_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTITY_UIDS_OF_CODING_SCHEME_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The GE t_ entitie s_ o f_ codin g_ schem e_ sql.
GET_ENTRY_STATE - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_ENTRY_STATE_BY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
The GE t_ entr y_ stat e_ b y_ i d_ sql.
get_id() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
get_ns() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
GET_PICKLIST_DEFINITION_BY_PICKLISTID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
The GE t_ picklis t_ definitio n_ b y_ picklisti d_ sql.
GET_PICKLIST_DEFINITION_ID_FOR_ENTITYCODE_ENTITYCODENAMESPACE_PROPERTYID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_DEFINITION_ID_FOR_ENTITYCODE_ENTITYCODENAMESPACE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_DEFINITION_ID_FOR_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_DEFINITION_METADATA_BY_PICKLISTID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_ENTRYNODE_BEAN_BY_PICKLIST_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_ENTRYNODEGUID_BY_PICKLISTID_AND_PLENTRYID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PICKLIST_GUID_BY_PICKLISTID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
The GE t_ picklis t_ gui d_ b y_ picklisti d_ sql.
GET_PICKLIST_IDS_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
The GE t_ picklis t_ id s_ sql.
GET_PICKLISTID_FOR_SUPPORTED_TAG_AND_VALUE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_PROPERTIES_OF_PARENT_UIDS_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GET_PROPERTY_ATTRIBUTES_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GET_PROPERTY_ATTRIBUTES_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
GET_PROPERTY_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
GET_PROPERTY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The GE t_ propert y_ i d_ sql.
GET_PROPERTY_LINKS_BY_ENTITY_UIDS_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_PROPERTY_MULTIATTRIB_BY_PROPERTY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GET_PROPERTY_MULTIATTRIB_BY_PROPERTY_ID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
GET_PROPERTY_UID_BY_ID_AND_NAME - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GET_RESOLVED_CODED_NODE_REFERENCE_BY_CODE_AND_NAMESPACE_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
GET_SOURCE_LIST_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_SOURCE_LIST_BY_PARENT_GUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_SOURCE_LIST_FROM_HISTORY_BY_PARENT_ENTRYSTATEGUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_SOURCE_LIST_FROM_HISTORY_BY_PARENT_ENTRYSTATEGUID_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_SYSTEM_RELEASE_ID_BY_URI - Static variable in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
The GE t_ syste m_ releas e_ i d_ b y_ uri.
GET_SYSTEM_RELEASE_ID_BY_URI - Static variable in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
The GE t_ syste m_ releas e_ i d_ b y_ uri.
get_text() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
GET_URIMAPS_BY_REFERENCE_GUID_LOCALNAME_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_URIMAPS_BY_REFERENCE_GUID_LOCALNAME_AND_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_URIMAPS_BY_REFERENCE_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
GET_URIMAPS_BY_REFERENCE_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEF_PROPERTY_LIST_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEFINITION_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEFINITION_GUID_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEFINITION_METADATA_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEFINITION_URI_FOR_VALUESET_NAME_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESET_DEFINITION_URIS_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESETDEFINITIONURI_FOR_SUPPORTED_TAG_AND_VALUE_AND_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESETDEFINITIONURI_FOR_SUPPORTED_TAG_AND_VALUE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
GET_VALUESETSCHEMEREF_FOR_TOP_NODE_SOURCE_CODE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getAbbreviation() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
getAbbreviationByCodeOrURL(OBOAbbreviations, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
getAbsoluteCodingSchemeVersionReference(String, CodingSchemeRenderingList) - Static method in class edu.mayo.informatics.lexgrid.convert.options.CodingSchemeReferencesStringArrayPickListOption
 
getAbsoluteCodingSchemeVersionReference(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method getAbsoluteCodingSchemeVersionReference.
getAbsoluteCodingSchemeVersionReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method getAbsoluteCodingSchemeVersionReference.Returns the contents of the collection in an Array.
getAbsoluteCodingSchemeVersionReference(String, CodingSchemeVersionOrTag, boolean) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the absolute coding scheme version reference.
getAbsoluteCodingSchemeVersionReference(String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return a list of all the versions of the supplied coding scheme URI or local identifier that are supported by the service
getAbsoluteCodingSchemeVersionReferenceCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method getAbsoluteCodingSchemeVersionReferenceCount.
getAbsoluteCodingSchemeVersionReferenceFromOptionString(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getAbsoluteIndexLocation() - Static method in class org.lexevs.system.constants.SystemVariables
 
getAccessMode() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getAccessMode.
getAccessMode() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getAccessMode.
getAction() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getActivationDate() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the activation date.
getActiveOption() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToStatus
 
getActiveOptionName() - Method in class org.LexGrid.LexBIG.DataModel.enums.ActiveOption
Returns the value of field 'activeOptionName'.
getActualTableSetPrefix() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
 
getAddress() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getAliases() - Method in enum org.lexevs.dao.database.type.DatabaseType
 
getAllAncestorTriplesTrOfCodingScheme(String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllAncestorTriplesTrOfCodingScheme(String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getAllAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getAllAssocQualifiersFromRRF_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getAllCodes() - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Gets the all codes.
getAllCodes() - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
getAllCodingSchemeRevisions(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
getAllCodingSchemeRevisions(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getAllCodingSchemeRevisions(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
GetAllConcepts - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the GetAllConcepts operation.
GetAllConcepts(String, CodingSchemeVersionOrTag) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.GetAllConcepts
 
GetAllConcepts(String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.GetAllConcepts
 
getAllDescendantTriplesTrOfCodingScheme(String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllDescendantTriplesTrOfCodingScheme(String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllDifferent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getAllDifferent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getAllEntitiesOfCodingScheme(String, int, int) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Gets the all entities of coding scheme.
getAllEntitiesOfCodingScheme(String, int, int) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getAllEntitiesOfCodingScheme(String, int, int) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getAllEntityAssocToEntityGuidsOfCodingScheme(String, String, int, int) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllEntityAssocToEntityGuidsOfCodingScheme(String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllGraphDbTriplesOfCodingScheme(String, String, int, int) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllGraphDbTriplesOfCodingScheme(String, List<String>) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllGraphDbTriplesOfCodingScheme(String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllGraphDbTriplesOfCodingScheme(String, List<String>) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllGraphtTriplesOfCodingSchemeTestStart() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllGraphtTriplesPlusEntityOfCodingSchemeLimit1() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllHistoryPropertiesOfParentByRevisionGuid(String, String, VSPropertyDao.ReferenceType) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
getAllHistoryPropertiesOfParentByRevisionGuid(String, String, VSPropertyDao.ReferenceType) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getAllHistoryPropertyUidsOfParentByRevisionId(String, String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getAllHistoryPropertyUidsOfParentByRevisionId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
GetAllIncomingConceptsForAssociation - Class in org.LexGrid.LexBIG.example
 
GetAllIncomingConceptsForAssociation() - Constructor for class org.LexGrid.LexBIG.example.GetAllIncomingConceptsForAssociation
 
getallIncomingConceptsForAssociation(String, CodingSchemeVersionOrTag, String, String, int) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
getallIncomingConceptsForAssociation(String, CodingSchemeVersionOrTag, String, String, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAllMembers() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
getAllMembers() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
getAllMembers() - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
getAllMembers() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
getAllMembers() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
getAllMembers() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
getAllowedFileExtensions() - Method in class edu.mayo.informatics.lexgrid.convert.options.URIOption
 
getAllowedFileExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.URIOption
Gets the allowed file extensions.
getAllProperties() - Method in class org.LexGrid.concepts.Entity
Returns all of the Properties (and subclasses of Property) contained by this Entity.
getAllPropertiesOfParent(String, String, PropertyDao.PropertyType) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Gets the all properties of parent.
getAllPropertiesOfParent(String, VSPropertyDao.ReferenceType) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Gets the all properties of parent.
getAllPropertiesOfParent(String, String, PropertyDao.PropertyType) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getAllPropertiesOfParent(String, VSPropertyDao.ReferenceType) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getAllRegistryEntries() - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the all registry entries.
getAllRegistryEntries() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getAllRegistryEntries() - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getAllRegistryEntries() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getAllRegistryEntries() - Method in interface org.lexevs.registry.service.Registry
Gets the all registry entries.
getAllRegistryEntries() - Method in class org.lexevs.registry.service.XmlRegistry
 
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the all registry entries of type.
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in interface org.lexevs.registry.service.Registry
Gets the all registry entries of type.
getAllRegistryEntriesOfType(Registry.ResourceType) - Method in class org.lexevs.registry.service.XmlRegistry
 
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the all registry entries of type and URI.
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in interface org.lexevs.registry.service.Registry
Gets the all registry entries of type and URI.
getAllRegistryEntriesOfTypeAndURI(Registry.ResourceType, String) - Method in class org.lexevs.registry.service.XmlRegistry
 
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the all registry entries of type, URI and version.
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in interface org.lexevs.registry.service.Registry
Gets the all registry entries of type, URI and version.
getAllRegistryEntriesOfTypeURIAndVersion(Registry.ResourceType, String, String) - Method in class org.lexevs.registry.service.XmlRegistry
 
getAllRegistryEntriesOfUriAndTypes(String, Registry.ResourceType[]) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
 
getAllRegistryEntriesOfUriAndTypes(String, Registry.ResourceType...) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getAllRevisions() - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
get all system release entries.
getAllRevisions() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getAllSourceAssertedValueSetEntities() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getAllSourceAssertedValueSetEntities() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
 
getAllSQLInterfaces() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the all sql interfaces.
getAllSystemRelease() - Method in interface org.lexevs.dao.database.access.systemRelease.SystemReleaseDao
get all system release entries.
getAllSystemRelease() - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
getAllTriplesOfCodingScheme(String, String, int, int) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAllTriplesOfCodingScheme(String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAllTriplesOfCodingSchemeLimit1() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllTriplesOfCodingSchemeTestStart() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllTriplesTrAncestorsTest() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllTriplesTrDescendantsTest() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
getAllURIMappings(Mappings) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Insert into mappings.
getAllUsedRelationsDelete() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
Don't use this function as the rel.isUsed is not being set correctly while the OBO file is being read.
getAllValidValueSetTopNodeCodes(String, String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns a set of Nodes that also provide a description of the top node.
getAllValidValueSetTopNodeCodes(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getAllValidValueSetTopNodeCodes() - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getAllValidValueSetTopNodeCodes() - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getAllValueSetDefinitionsWithNoName() - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Return the URI's of all unnamed value set definition(s).
getAllValueSetDefinitionsWithNoName() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getAllValueSetDefinitionsWithNoName() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Return the URI's of all unnamed value set definition(s).
getAllValueSetDefinitionsWithNoName() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getAllValueSetDefinitionsWithNoName() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getAllValueSetDefinitionsWithNoName() - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Return the URI's of all unnamed value set definition(s).
getAllValueSetNodesWithoutSource(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getAllVSTriples(String, String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetHierarchyDao
Getting any values that are defined as value set members by a specified association and a "can publish" flag
getAllVSTriples(String, String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetHierarchyDao
 
getAllVSTriplesTrOfVSNode(String, String, String, String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetHierarchyDao
Highly specialized for an asserted value set hierarchy such as that found in the NCIthesaurus.
getAllVSTriplesTrOfVSNode(String, String, String, String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetHierarchyDao
 
getAlternativeNamingForShortName(String, String, HashMap<String, String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getAltIds() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getAnalyzer() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getAnalyzer() - Method in interface org.lexevs.dao.index.indexer.EntityIndexer
 
getAnalyzer() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
getAnalyzer() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getAnalyzer() - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getAnalyzer() - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
getAnalyzer() - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getAnalyzer() - Static method in class org.lexevs.dao.indexer.utility.Utility
 
getAnalyzerTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
getAnaylzer() - Static method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
getAncestors(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getAncestors(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getAncestors(String, ConceptReference) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the ancestors.
getAncestors(String, ConceptReference) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getAncestors(ConceptReference) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the list of change events identifying the immediate ancestors of the given concept reference.
getAncestors(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getAncestors(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getAncestors(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getAncestors(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getAncestors(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getAncestorsInTransitiveClosure(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
getAncestorsInTransitiveClosure(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAndVerifyURIFromTextField(Text) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
getAnonDesignationForPredicate(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAnonDesignationForPredicate(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAnonymousOption() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToAnonymous
 
getAnonymousStatus() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getAnyExternallyDefinedNodes(String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getAnyExternallyDefinedNodesTest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
getAnyObject(int) - Method in class org.LexGrid.builtins.TsAnyType
Method getAnyObject.
getAnyObject() - Method in class org.LexGrid.builtins.TsAnyType
Method getAnyObject.Returns the contents of the collection in an Array.
getAnyObject(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method getAnyObject.
getAnyObject() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method getAnyObject.Returns the contents of the collection in an Array.
getAnyObjectAsReference() - Method in class org.LexGrid.builtins.TsAnyType
Method getAnyObjectAsReference.Returns a reference to '_anyObject'.
getAnyObjectCount() - Method in class org.LexGrid.builtins.TsAnyType
Method getAnyObjectCount.
getAnyObjectCount() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method getAnyObjectCount.
getApplicationContext() - Method in class org.lexevs.tree.service.ApplicationContextFactory
Deprecated.
Gets the application context.
getApplicationContext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.ApplicationContextFactory
Gets the application context.
getApplicationListener() - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
getApproxNumberOfConcepts() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
getApproxNumConcepts() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'approxNumConcepts'.
getArgumentKey(Object, ParameterKey) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getArgumentKey(Object) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getArguments(T) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getArguments(MethodInvocation) - Method in class org.lexevs.cache.MethodCachingInterceptor
 
getArguments(ProceedingJoinPoint) - Method in class org.lexevs.cache.MethodCachingProxy
 
getAscending() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
Returns the value of field 'ascending'.
getAssemblyRule() - Method in class org.LexGrid.naming.SupportedSource
Returns the value of field 'assemblyRule'.
getAssertedValueSetCodingSchemeName() - Method in class org.lexevs.system.constants.SystemVariables
 
getAssertedValueSetCodingSchemeTag() - Method in class org.lexevs.system.constants.SystemVariables
 
getAssertedValueSetCodingSchemeURI() - Method in class org.lexevs.system.constants.SystemVariables
 
getAssertedValueSetDao() - Method in class org.lexevs.dao.database.access.DaoManager
 
getAssertedValueSetHierarchyVSRelation() - Method in class org.lexevs.system.constants.SystemVariables
 
getAssertedValueSetIndexName() - Static method in class org.lexevs.system.constants.SystemVariables
 
getAssertedValueSetIndexService() - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
getAssertedValueSetRelation() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getAssertedValueSetService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
getAssertedValueSetVersion() - Method in class org.lexevs.system.constants.SystemVariables
 
getAssnQualsAndUsageContext() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
 
getAssnQualsAndUsageContext() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
 
getAssoc(int) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method getAssoc.
getAssoc() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method getAssoc.Returns the contents of the collection in an Array.
getAssocAsReference() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method getAssocAsReference.Returns a reference to '_assocList'.
getAssocCount() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method getAssocCount.
getAssocDataService() - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Gets the assoc data service.
getAssociatedConcept(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method getAssociatedConcept.
getAssociatedConcept() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method getAssociatedConcept.Returns the contents of the collection in an Array.
getAssociatedConcept() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
getAssociatedConcept(int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
getAssociatedConceptCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method getAssociatedConceptCount.
getAssociatedConceptCount() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
getAssociatedConceptFromUidSource(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the associated concept from uid source.
getAssociatedConceptFromUidSource(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociatedConceptFromUidTarget(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the associated concept from uid target.
getAssociatedConceptFromUidTarget(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociatedConceptInGraph(String, AssociatedConcept) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.CycleDetectingCallback
Gets the associated concept in graph.
getAssociatedConceptInGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.ReferenceReturningCycleDetectingCallback
 
getAssociatedConceptInGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
 
getAssociatedConceptNode(AssociationListBuilder.AssociationDirection) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
Gets the associated concept node.
getAssociatedConcepts() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'associatedConcepts'.
getAssociatedConceptsFromUid(String, List<String>, List<CodedNodeGraphService.Sort>, CodedNodeGraphDao.TripleNode) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getAssociatedConceptsFromUid(String, List<String>, List<CodedNodeGraphService.Sort>, CodedNodeGraphDao.TripleNode) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getAssociatedConceptsFromUidSource(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], List<CodedNodeGraphService.Sort>, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the associated concepts from uid source.
getAssociatedConceptsFromUidSource(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], List<CodedNodeGraphService.Sort>, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociatedConceptsFromUidTarget(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], List<CodedNodeGraphService.Sort>, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the associated concepts from uid target.
getAssociatedConceptsFromUidTarget(String, String, boolean, LocalNameList, CodedNodeSet.PropertyType[], List<CodedNodeGraphService.Sort>, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociatedData(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method getAssociatedData.
getAssociatedData() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method getAssociatedData.Returns the contents of the collection in an Array.
getAssociatedData() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'associatedData'.
getAssociatedDataCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method getAssociatedDataCount.
getAssociatedURL() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'associatedURL'.
getAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
getAssociation(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getAssociation(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getAssociation() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getAssociation(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method getAssociation.
getAssociation() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method getAssociation.Returns the contents of the collection in an Array.
getAssociationCodeFromAssociationName(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the Association Entity Code given an Association Name.
getAssociationCodeFromAssociationName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method getAssociationCount.
getAssociationDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the association dao.
getAssociationDao() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getAssociationDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the association daos.
getAssociationData() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Gets the association data.
getAssociationDataByUid(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getAssociationDataByUid(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getAssociationDataDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the association data dao.
getAssociationDataDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationDataDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getAssociationDataService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the association data service.
getAssociationDataText() - Method in class org.LexGrid.relations.AssociationData
Returns the value of field 'associationDataText'.
getAssociationDataUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getAssociationDataUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getAssociationDefinitions() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'associationDefinitions'.
getAssociationDefList(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getAssociationEntity() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
getAssociationEntity() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
getAssociationEntity() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationEntityBean
 
getAssociationEntity(String, String, String, String) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the association entity.
getAssociationEntity() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
getAssociationEntity(String, String, String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getAssociationEntity(int) - Method in class org.LexGrid.concepts.Entities
Method getAssociationEntity.
getAssociationEntity() - Method in class org.LexGrid.concepts.Entities
Method getAssociationEntity.Returns the contents of the collection in an Array.
getAssociationEntity(String, CodingSchemeVersionOrTag, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
 
getAssociationEntityAsReference() - Method in class org.LexGrid.concepts.Entities
Method getAssociationEntityAsReference.Returns a reference to '_associationEntityList'.
getAssociationEntityByCodeAndNamespace(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getAssociationEntityByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getAssociationEntityByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getAssociationEntityCount() - Method in class org.LexGrid.concepts.Entities
Method getAssociationEntityCount.
getAssociationEntityWithWrongType() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
getAssociationForwardAndReverseNames(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return all the association forward name and reverse name for the coding scheme.
getAssociationForwardAndReverseNames(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getAssociationForwardAndReverseNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationForwardAndReverseNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return all the association forward name and reverse name for the coding scheme.
getAssociationForwardName(String, String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the forward name for the identified association.
getAssociationForwardName(String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationForwardNames(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return all the association forward name for the coding scheme.
getAssociationForwardNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationForwardNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return all the association forward name for the coding scheme.
getAssociationForwardOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of the association between the concepts with the given code in the forward direction of the association in the specified relation containerName.
getAssociationForwardOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationForwardOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return all of the concepts that come one level in the forward direction of the association when traversing the graph from the concept code.
getAssociationInfo(String, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
getAssociationInfo() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getAssociationInfo(String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns a shared structure containing identifying information for the given association; a new information object is automatically created if necessary.
getAssociationInstanceId() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getAssociationInstanceId() - Method in class org.LexGrid.relations.AssociatableElement
Returns the value of field 'associationInstanceId'.
getAssociationInstanceIdResolver() - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
getAssociationInstanceIdResolver() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getAssociationInstanceIdResolver() - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
getAssociationInstanceIdResolver() - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
getAssociationInstanceIdResolver() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getAssociationInstanceKeyResolver() - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
getAssociationLabel(String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
getAssociationLabel(String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
getAssociationName() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getAssociationName() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'associationName'.
getAssociationName() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Gets the association name.
getAssociationName(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
getAssociationName(String) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
getAssociationName(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the association name.
getAssociationName() - Method in class org.LexGrid.relations.AssociationPredicate
Returns the value of field 'associationName'.
getAssociationNameForDirectionalName(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Gets the association names that contain a directional name.
getAssociationNameForDirectionalName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationNameFromAssociationCode(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the Association Name given an Association Entity Code.
getAssociationNameFromAssociationCode(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationNames() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
 
getAssociationNames() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the association names.
getAssociationNames(List<SupportedHierarchy>) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the association names.
getAssociationNames() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the association names.
getAssociationNames(List<SupportedHierarchy>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the association names.
getAssociationNames(int) - Method in class org.LexGrid.naming.SupportedHierarchy
Method getAssociationNames.
getAssociationNames() - Method in class org.LexGrid.naming.SupportedHierarchy
Method getAssociationNames.Returns the contents of the collection in an Array.
getAssociationNamesAsReference() - Method in class org.LexGrid.naming.SupportedHierarchy
Method getAssociationNamesAsReference.Returns a reference to '_associationNamesList'.
getAssociationNamesCount() - Method in class org.LexGrid.naming.SupportedHierarchy
Method getAssociationNamesCount.
getAssociationPairFromMappings(Mappings, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getAssociationPredicate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
getAssociationPredicate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
getAssociationPredicate() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationPredicateBean
Gets the association predicate.
getAssociationPredicate(Relations, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getAssociationPredicate(int) - Method in class org.LexGrid.relations.Relations
Method getAssociationPredicate.
getAssociationPredicate() - Method in class org.LexGrid.relations.Relations
Method getAssociationPredicate.Returns the contents of the collection in an Array.
getAssociationPredicateAsReference() - Method in class org.LexGrid.relations.Relations
Method getAssociationPredicateAsReference.Returns a reference to '_associationPredicateList'.
getAssociationPredicateByUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateCount() - Method in class org.LexGrid.relations.Relations
Method getAssociationPredicateCount.
getAssociationPredicateId() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the association predicate id.
getAssociationPredicateId() - Method in class org.lexevs.dao.database.access.association.model.Triple
 
getAssociationPredicateKeyResolver() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getAssociationPredicateKeyResolver() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getAssociationPredicateName() - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Gets the association predicate name.
getAssociationPredicateNameForAssociationInstanceId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateNameForAssociationInstanceId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateNameForUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateNameForUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateNames(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
Gets the association predicate names.
getAssociationPredicateNamesForCodingScheme(String, String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the association predicate names for coding scheme.
getAssociationPredicateNamesForCodingScheme(String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociationPredicateNamesForCodingSchemeUid(String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getAssociationPredicateNamesForCodingSchemeUid(String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getAssociationPredicateUid() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsBean
 
getAssociationPredicateUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Gets the association predicate id.
getAssociationPredicateUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Gets the association predicate id.
getAssociationPredicateUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Gets the association predicate id.
getAssociationPredicateUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the association predicate id.
getAssociationPredicateUid(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
Gets the association predicate uid.
getAssociationPredicateUIdByContainerName(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateUIdByContainerName(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateUIdByContainerUId(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Gets the association predicate id.
getAssociationPredicateUIdByContainerUId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateUids(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
Gets the association predicate uids.
getAssociationPredicateUidsForAssociationName(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateUidsForAssociationName(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateUidsForDirectionalName(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateUidsForDirectionalName(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationPredicateUidsForNames(String, String, String, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the association predicate uids for names.
getAssociationPredicateUidsForNames(String, String, String, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getAssociationPredicateUIdsForRelationsUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getAssociationPredicateUIdsForRelationsUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationQualification() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getAssociationQualification(int) - Method in class org.LexGrid.relations.AssociatableElement
Method getAssociationQualification.
getAssociationQualification() - Method in class org.LexGrid.relations.AssociatableElement
Method getAssociationQualification.Returns the contents of the collection in an Array.
getAssociationQualificationAsReference() - Method in class org.LexGrid.relations.AssociatableElement
Method getAssociationQualificationAsReference.Returns a reference to '_associationQualificationList'.
getAssociationQualificationCount() - Method in class org.LexGrid.relations.AssociatableElement
Method getAssociationQualificationCount.
getAssociationQualifier() - Method in class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Gets the association qualifier.
getAssociationQualifier() - Method in class org.LexGrid.relations.AssociationQualification
Returns the value of field 'associationQualifier'.
getAssociationQualifiers(MrMap) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
getAssociationQualifiers() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getAssociationQualifiers() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getAssociationQualifiers() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
Returns the value of field 'associationQualifiers'.
getAssociationQualifiers() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToAssociations
 
getAssociationQualifiers() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToDirectionalNames
 
GetAssociationQualifiersTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
GetAssociationQualifiersTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.GetAssociationQualifiersTest
 
getAssociationReference(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Gets the association reference.
getAssociationReference() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'associationReference'.
getAssociationReference(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
getAssociationReference() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getAssociationReverseName(String, String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the reverse name for the identified association.
getAssociationReverseName(String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationReverseNames(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return all the association reverse name for the coding scheme.
getAssociationReverseNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationReverseNames(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return all the association reverse name for the coding scheme
getAssociationReverseOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of the association between the concepts with the given code in the reverse direction of the association in the specified relation containerName.
getAssociationReverseOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getAssociationReverseOneLevel(String, String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return all of the concepts that are one level in the reverse direction of the association to the concept code in the graph.
getAssociations() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getAssociations() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getAssociations() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToAssociations
 
getAssociationService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the association service.
getAssociationSource() - Method in class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Gets the association source.
getAssociationSource() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Gets the association source.
getAssociationSource() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Gets the association source.
getAssociationSource() - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Gets the association source.
getAssociationTarget() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Gets the association target.
getAssociationTarget(String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Gets the association target.
getAssociationTarget(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getAssociationTargetDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the association Target dao.
getAssociationTargetDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getAssociationTargetDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getAssociationTargetService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the association target service.
getAssociationTargetUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
getAssociationTargetUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getAssociationTripleByAssociationInstanceId(String, String, String) - Method in interface org.lexevs.dao.database.service.association.AssociationService
Gets the association triple by association instance id.
getAssociationTripleByAssociationInstanceId(String, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
 
getAssocInstance_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getAssocQualifier_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getAssocQualifierFromRRF_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getAssocTargetService() - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Gets the assoc target service.
getAtn() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getAtn() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getAtn() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getAtnl() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getAtomText(ResolvedConceptReference, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns a string representing the AUIs and text presentations applicable only for the given source abbreviation (SAB).
getAtomText(Property) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns text for AUI qualifiers for the given property.
getAttributeCache() - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
getAttributeId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the attribute id.
getAttributes(String, String[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getAttributes(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getAttributes(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getAttributes(Name, String[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getAttributeType() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Gets the attribute type.
getAttributeType() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the attribute type.
getAttributeType() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getAttributeValue() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Gets the attribute value.
getAttributeValue() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the attribute value.
getAttributeValue() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getAtui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getAtui() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getAtui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getAtui() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getAtv() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getAtv() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getAtv() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getAui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getAui() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getAui() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getAui(I) - Method in interface org.lexgrid.loader.rrf.processor.support.AuiResolver
 
getAui() - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver
 
getAui(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver
 
getAui1() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getAui2() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getAUIFromPresentation_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getAuiToReturn() - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver
 
getAuthoringService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the authoring service.
getAutoCommit() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getAutoLoadDBDriver() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadDBParameters() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadDBPassword() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadDBPrefix() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadDBURL() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadDBUsername() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadIndexLocation() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadRegistryPath() - Method in class org.lexevs.system.constants.SystemVariables
 
getAutoLoadSingleDBMode() - Method in class org.lexevs.system.constants.SystemVariables
Deprecated.
getAvailableTerminologies() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridLDAP
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
getAvailableTerminologies() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
getBasedOnRelease() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'basedOnRelease'.
getBaseIndexerService() - Method in class org.lexevs.dao.index.connection.IndexInterface
Gets the base indexer service.
getBaseLines(String, Date, Date) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getBaseLines(String, Date, Date) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getBaseLines(String, Date, Date) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the base lines.
getBaseLines(String, Date, Date) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getBaselines(Date, Date) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return a list of baselines supported by this service that were released on or after the first supplied date and were released on or before the second date.
getBaselines(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getBaseLines(String, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getBaselines(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getBaseLines(String, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getBaselines(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getBaseMetaDataLoader() - Method in class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
getBaseMetaDataLoader() - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
getBaseModel(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
getBaseRevision() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the base revision.
getBaseValueSetURI() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getBatch() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
Gets the batch.
getBatch() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
Gets the batch.
getBatchSize() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Gets the batch size.
getBatchSize() - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
getBatchTemplateInserter(SqlMapExecutor) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
 
getBean() - Method in class org.lexevs.system.constants.IndividualVariableFactory
Gets the bean.
getBlockJoinSearcher() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
getBooleanFromResultSet(ResultSet, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
getbooleanFromResultSet(ResultSet, String) - Static method in class org.LexGrid.util.sql.DBUtility
 
getBooleanOption(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getBooleanOption(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the boolean option.
getBooleanOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getBooleanOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the boolean options.
getBoundaryDocFilterMap() - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getBoundaryDocFilterMap() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getBreakAndIndent() - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns the text used to introduce line break and indentation as set for the current thread.
getBreakAndIndent() - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns the text used to introduce line break and indentation as set for the current thread.
getBrowserVsDescription() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getById(int) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
getById(int) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getById(int) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
getById(int) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getById(int) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
getById(int) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getById(Set<AbsoluteCodingSchemeVersionReference>, int) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getCache() - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
getCache(String, boolean) - Method in class org.lexevs.cache.CacheRegistry
 
getCache() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
getCache() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the cache.
getCache() - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptor
Gets the cache.
getCache_CodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache codingScheme copyRitght information, which maps from key (derived from request parameters) to CopyRight String.
getCache_CopyRights() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache codingScheme information, which maps from key (derived from request parameters) to CodingScheme object.
getCache_HIDs() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache hierarchy ID information, which maps from key (derived from request parameters) to an array of hierarchy IDs (String[]).
getCache_HPathToRootExists() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache hierarchy root existence, which maps from key (derived from request parameters) to a Boolean value.
getCache_HRootCodes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache hierarchy root code information, which maps from key (derived from request parameters) to an array of root codes (String[]).
getCache_HRoots() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the map used to cache hierarchy root information, which maps from key (derived from request parameters) to a ResolvedConceptReferenceList.
getCachedRootCodes() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
 
getCacheFromName(String, boolean) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getCacheKey(Object...) - Method in class org.lexevs.tree.dao.hierarchy.CachingHierarchyResolver
Deprecated.
Gets the cache key.
getCacheKey(Object[]) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return a cache key based on the given items.
getCacheKey(Object...) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.CachingHierarchyResolver
Gets the cache key.
getCacheKey(String, String, Object[]) - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptor
Gets the cache key.
getCacheManager() - Method in class org.lexevs.cache.CacheRegistry
 
getCacheRegistry() - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getCaches() - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getCaches() - Method in class org.lexevs.cache.CacheRegistry
 
getCacheSize() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Gets the cache size.
getCacheSize() - Method in class org.lexevs.system.constants.SystemVariables
 
getCacheStatisticsStringRepresentation() - Method in class org.lexevs.cache.CacheRegistry
 
getCacheWrappingFactory() - Method in class org.lexevs.locator.LexEvsServiceLocator
 
getCachingStatus() - Static method in class org.lexevs.cache.CacheSessionManager
 
getCatalog() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getCategoryValue() - Method in class org.LexGrid.LexBIG.Impl.loaders.helpers.CategoryNameValue
 
getCenc() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getCfr() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getChangeAgent() - Method in class org.LexGrid.versions.Revision
Returns the value of field 'changeAgent'.
getChanged() - Method in class org.lexevs.dao.database.service.event.revision.ReviseEvent
Gets the changed.
getChangedCodingSchemeEntry() - Method in class org.LexGrid.versions.ChangedEntry
Returns the value of field 'changedCodingSchemeEntry'.
getChangedEntry(int) - Method in class org.LexGrid.versions.Revision
Method getChangedEntry.
getChangedEntry() - Method in class org.LexGrid.versions.Revision
Method getChangedEntry.Returns the contents of the collection in an Array.
getChangedEntryAsReference() - Method in class org.LexGrid.versions.Revision
Method getChangedEntryAsReference.Returns a reference to '_changedEntryList'.
getChangedEntryCount() - Method in class org.LexGrid.versions.Revision
Method getChangedEntryCount.
getChangeDocumentation() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'changeDocumentation'.
getChangedPickListDefinitionEntry() - Method in class org.LexGrid.versions.ChangedEntry
Returns the value of field 'changedPickListDefinitionEntry'.
getChangedValueSetDefinitionEntry() - Method in class org.LexGrid.versions.ChangedEntry
Returns the value of field 'changedValueSetDefinitionEntry'.
getChangeInstructions() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'changeInstructions'.
getChangeInstructions() - Method in class org.LexGrid.versions.Revision
Returns the value of field 'changeInstructions'.
getChangeType() - Method in class org.LexGrid.versions.EntryState
Returns the value of field 'changeType'.
getCheckBox(String) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getCheckBoxContent(String) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getCheckTableName() - Method in class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
Gets the check table name.
getChild(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getChildCount() - Method in class org.lexevs.dao.database.service.codednodegraph.model.CountConceptReference
Gets the child count.
getChildCount() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getChildIterator() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the child iterator.
getChildIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the child iterator.
getChildlessNodes(SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns all nodes maintained by the graph that are target but not source of any relationship.
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in class org.lexevs.tree.dao.GraphLexEvsTreeDao
Deprecated.
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in class org.lexevs.tree.dao.GraphLexEvsTreeDao
Deprecated.
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in interface org.lexevs.tree.dao.LexEvsTreeDao
Deprecated.
Gets the children.
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in interface org.lexevs.tree.dao.LexEvsTreeDao
Deprecated.
Gets the children.
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.GraphLexEvsTreeDao
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.GraphLexEvsTreeDao
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
 
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int, int) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao
Gets the children.
getChildren(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, List<String>, int, int) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao
Gets the children.
getChildren(SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getChildren() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getChildren_nodes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.lexevs.tree.dao.GraphLexEvsTreeDao
Deprecated.
 
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
 
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in interface org.lexevs.tree.dao.LexEvsTreeDao
Deprecated.
Gets the children count.
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.GraphLexEvsTreeDao
 
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
 
getChildrenCount(String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao
Gets the children count.
GetChildrenSqlBuilder - Class in org.lexevs.tree.dao.sqlbuilder
Deprecated.
GetChildrenSqlBuilder() - Constructor for class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
 
GetChildrenSqlBuilder - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder
The Class GetChildrenSqlBuilder.
GetChildrenSqlBuilder() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
 
getChoiceValue() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
Returns the value of field 'choiceValue'.
getChoiceValue() - Method in class org.LexGrid.relations.AssociationSource
Returns the value of field 'choiceValue'.
getChoiceValue() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'choiceValue'.
getChoiceValue() - Method in class org.LexGrid.versions.ChangedEntry
Returns the value of field 'choiceValue'.
getClamlDefaultLang() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getClamlPackageName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getClassAssociationQualifier() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getClassLoader() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
Gets the class loader.
getClassLoader() - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getClassLoader() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getClassLoader() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getClassLoader() - Method in interface org.lexevs.system.service.SystemResourceService
Gets the class loader.
getCleanedCodeList(ConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getClientInfo() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getClientInfo(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getCng() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.CnsCngPair
 
getCns() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.CnsCngPair
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
getCode() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getCode() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
Gets the code.
getCode() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the code.
getCode() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Returns the value of field 'code'.
getCode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the code.
getCode() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getCode() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getCode() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getCode() - Method in class org.LexGrid.LexBIG.Impl.loaders.helpers.CategoryNameValue
 
getCode() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Gets the code.
getCode() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getCode() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getCode() - Method in class org.lexgrid.loader.rrf.staging.model.CodeSabPair
Gets the code.
getCode() - Method in class org.lexgrid.loader.wrappers.CodeCodingSchemePair
Gets the code.
getCodeAndCodingScheme(String, String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodeAndCodingScheme(String, String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
Gets the code and coding scheme.
getCodeAndSab(String, String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodeAndSab(String, String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
Gets the code and sab.
getCodeDescription(LexBIGService, String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Returns the entity description for the given code.
getCodeDescription(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Returns the entity description for the given resolved concept reference.
getCodedNodeGraph(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphFactory
Gets the coded node graph.
getCodedNodeGraphDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
 
getCodedNodeGraphDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getCodedNodeGraphService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the coded node graph service.
getCodedNodeReference(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method getCodedNodeReference.
getCodedNodeReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method getCodedNodeReference.Returns the contents of the collection in an Array.
getCodedNodeReferenceCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method getCodedNodeReferenceCount.
getCodedNodeSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
 
getCodedNodeSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
 
getCodedNodeSet(String, CodingSchemeVersionOrTag, Boolean, LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetFactory
Gets the coded node graph.
getCodedNodeSet() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
getCodedNodeSet() - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetCodedNodeSet
 
getCodedNodeSetForValueSet(ValueSetDefinition, HashMap<String, String>, String, HashMap<String, ValueSetDefinition>) - Method in class org.lexgrid.valuesets.helper.DefaultCompiler
Resolves the supplied valueSetDefinition object against the list of coding scheme versions
getCodedNodeSetForValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getCodedNodeSetForValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, CodedNodeSet.AnonymousOption) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getCodedNodeSetForValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns unresolved CodedNodeSet populated using definition entries in the value set definition.
getCodedNodeSetForValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, CodedNodeSet.AnonymousOption) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns unresolved CodedNodeSet populated using definition entries in the value set definition.
getCodeExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getCodeForCUI_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getCodeForCUINoAUI_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getCodeFromAui - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The get code from aui.
getCodeFromAui(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodeFromAui(String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
Gets the code from aui.
getCodeFromCuiAndAui - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The get code from cui and aui.
getCodeHolderFactory() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getCodeListForVersion(String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getCodeListForVersion(String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getCodeListForVersion(String, String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
 
getCodeListForVersion(String, String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getCodeListForVersion(String) - Method in interface org.LexGrid.LexBIG.History.HistoryService
 
getCodeListForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getCodeListForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getCodeListForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getCodeMap() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the code map.
getCodeMap() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the code map.
getCodeNamespace() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Returns the value of field 'codeNamespace'.
getCodeNamespace() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
GetCodeRelationshipsBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
GetCodeRelationshipsBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getCodes() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeRestriction
 
getCodes(String, String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodes(String, String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
Gets the codes.
getCodesFromCodedNodeSet(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
getCodesFromCui - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodesFromCui(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCodesFromCui(String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
 
getCodesFromCuiAndSab - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The get codes from cui and sab.
getCodeSystem() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
getCodeSystemKeys() - Method in class org.lexevs.dao.index.connection.IndexInterface
Gets the code system keys.
getCodeSystems() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getCodeSystemVersions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getCodeTypes() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getCodingScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
getCodingScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextToSQL
 
getCodingScheme(String, String) - Method in interface org.lexevs.dao.database.access.codednodeset.CodedNodeSetDao
Gets the coding scheme.
getCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
Gets the coding scheme.
getCodingScheme() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeInsertErrorEvent
Gets the coding scheme.
getCodingScheme() - Method in class org.lexevs.dao.database.service.event.codingscheme.PostCodingSchemeInsertEvent
Gets the coding scheme.
getCodingScheme() - Method in class org.lexevs.dao.database.service.event.codingscheme.PreCodingSchemeInsertEvent
Gets the coding scheme.
getCodingScheme(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
getCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.lexevs.tree.dao.hierarchy.CachingHierarchyResolver
Deprecated.
Gets the coding scheme.
getCodingScheme() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the coding scheme.
getCodingScheme(int) - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method getCodingScheme.
getCodingScheme() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method getCodingScheme.Returns the contents of the collection in an Array.
getCodingScheme() - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
getCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Primitive method to resolve and cache coding scheme representations.
getCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.CachingHierarchyResolver
Gets the coding scheme.
getCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the coding scheme.
getCodingScheme(URI, LgMessageDirectorIF, boolean, CodingSchemeManifest) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getCodingScheme() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'codingScheme'.
getCodingScheme() - Method in class org.lexgrid.loader.wrappers.CodeCodingSchemePair
Gets the coding scheme.
getCodingScheme() - Method in class org.LexGrid.naming.SupportedAssociation
Returns the value of field 'codingScheme'.
getCodingScheme() - Method in class org.LexGrid.valueSets.CodingSchemeReference
Returns the value of field 'codingScheme'.
getCodingScheme() - Method in class org.LexGrid.valueSets.PropertyReference
Returns the value of field 'codingScheme'.
getCodingSchemeAsReference() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method getCodingSchemeAsReference.Returns a reference to '_codingSchemeList'.
getCodingSchemeByNameAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme by name and version.
getCodingSchemeByNameAndVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeByNameAndVersion(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeByRevision(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeByUId(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme by id.
getCodingSchemeByUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeByUId(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeByUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme by uri and version.
getCodingSchemeByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeByUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Gets the coding scheme by uri and version.
getCodingSchemeByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getCodingSchemeByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeConcepts(String, CodingSchemeVersionOrTag, boolean) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
Deprecated. 
getCodingSchemeConcepts(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getCodingSchemeConcepts(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the set of all concepts in the specified coding scheme.
getCodingSchemeConcepts(String, CodingSchemeVersionOrTag, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Deprecated.
Replaced by use of base getCodingSchemeConcepts() method and use of the ActiveStatus restriction.
getCodingSchemeCopyright(String, String) - Method in interface org.lexevs.dao.database.access.codednodeset.CodedNodeSetDao
Gets the coding scheme copyright.
getCodingSchemeCopyright(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
getCodingSchemeCopyright(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Gets the coding scheme copyright.
getCodingSchemeCopyright(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the copyright text for the coding scheme.
getCodingSchemeCopyright(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
getCodingSchemeCopyright(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Primitive method to resolve and cache coding scheme copyRight text.
getCodingSchemeCount() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method getCodingSchemeCount.
getCodingSchemeDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the coding scheme dao.
getCodingSchemeDao() - Method in class org.lexevs.dao.database.utility.CodingSchemeUriVersionToUUID
Gets the coding scheme dao.
getCodingSchemeDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the coding scheme daos.
getCodingSchemeDescription() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Returns the value of field 'codingSchemeDescription'.
getCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.registry.service.Registry
Gets the coding scheme entry.
getCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
 
getCodingSchemeFilter(String, String) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
getCodingSchemeFilter(String, String) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getCodingSchemeFilter(String, String) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
getCodingSchemeFilterMap() - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getCodingSchemeFilterMap() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getCodingSchemeForNamespace(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandler
 
getCodingSchemeForNamespace(String, String, String) - Method in interface org.LexGrid.LexBIG.Impl.namespace.NamespaceHandler
 
getCodingSchemeHistoryXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getCodingSchemeId(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
Gets the coding scheme id.
getCodingSchemeId() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
Gets the coding scheme id.
getCodingSchemeId() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
Gets the coding scheme id.
getCodingSchemeId() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Gets the coding scheme id.
getCodingSchemeId(String, String) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
getCodingSchemeId(String, String) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.listener.CleanupListener
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.processor.CodingSchemeIdAwareProcessor
Gets the coding scheme name setter.
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.processor.support.SameAsCodingSchemeNameEntityNamespaceResolver
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
Gets the coding scheme name setter.
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
Gets the coding scheme name setter.
getCodingSchemeIdSetter() - Method in class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
getCodingSchemeKey(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getCodingSchemeKey(String, String) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getCodingSchemeKey(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getCodingSchemeKey(String, String) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getCodingSchemeList() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getCodingSchemeManifest() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.ReadImpl
 
getCodingSchemeManifest() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
getCodingSchemeManifest() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Get the CodingSchemeManifest that would be used to modify the ontology content.
getCodingSchemeManifest() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Get the CodingSchemeManifest that would be used to modify the ontology content.
getCodingSchemeManifest() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getCodingSchemeManifest() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getCodingSchemeManifest() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getCodingSchemeManifestURI() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Get the URI of the codingSchemeManifest that would be used to modify the ontology content.
getCodingSchemeManifestURI() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Get the URI of the codingSchemeManifest that would be used to modify the ontology content.
getCodingSchemeManifestURI() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getCodingSchemeManifestURI() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getCodingSchemeManifestURI() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getCodingSchemeMatchQuery(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getCodingSchemeMetaData(String, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
getCodingSchemeMetaData(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getCodingSchemeMetaDataForNameAndVersion(String, String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getCodingSchemeMetaDataForUriAndVersion(String, String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getCodingSchemeName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
 
getCodingSchemeName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextToSQL
 
getCodingSchemeName() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getCodingSchemeName() - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Gets the coding scheme name.
getCodingSchemeName() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'codingSchemeName'.
getCodingSchemeName() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Returns the value of field 'codingSchemeName'.
getCodingSchemeName(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the coding scheme name.
getCodingSchemeName() - Method in interface org.lexgrid.loader.data.codingScheme.CodingSchemeIdSetter
Gets the coding scheme name.
getCodingSchemeName() - Method in class org.lexgrid.loader.data.codingScheme.SimpleCodingSchemeIdSetter
 
getCodingSchemeName() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getCodingSchemeName() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
getCodingSchemeName() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
getCodingSchemeName() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getCodingSchemeNameForMininumReference(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getCodingSchemeNameForNamespace(String, Mappings) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getCodingSchemeNameForNamespace(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandler
 
getCodingSchemeNameForNamespace(String, String, String) - Method in interface org.LexGrid.LexBIG.Impl.namespace.NamespaceHandler
 
getCodingSchemeNameForNamespaceName(Mappings, String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the local identifier of the coding scheme name associated with the supplied namespace name in the context of the supplied mapping.
getCodingSchemeNameFromManifest(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Helper method to check if the Coding Scheme Name is changed in the Manifest.
getCodingSchemeNameFromSab(String) - Method in class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
 
getCodingSchemeNameFromSab(String) - Method in interface org.lexgrid.loader.rrf.data.codingscheme.MrsabUtility
Gets the coding scheme name from sab.
getCodingSchemeNames(URNVersionPair[]) - Static method in class edu.mayo.informatics.lexgrid.convert.utility.URNVersionPair
 
getCodingSchemeNamespace(CodingScheme, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getCodingSchemeNameWithoutVersion() - Method in class org.lexevs.system.model.LocalCodingScheme
Gets the coding scheme name without version.
getCodingSchemeProperties() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
Gets the coding scheme properties.
getCodingSchemeProperties() - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
Gets the coding scheme properties.
getCodingSchemeRef() - Method in class org.LexGrid.LexBIG.admin.LoadMetaBatchWithMetadata
 
getCodingSchemeReference() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getCodingSchemeReference() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'codingSchemeReference'.
getCodingSchemeReferences() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Returns absolute references for coding schemes loaded or used by the most recent operation; empty if not applicable.
getCodingSchemeReferences() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getCodingSchemeReferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getCodingSchemeReferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getCodingSchemeReferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getCodingSchemeReferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getCodingSchemeRefs() - Method in class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
Gets the AbsoluteCodingSchemeVersionReference.
getCodingSchemeRefs() - Method in class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
Gets the AbsoluteCodingSchemeVersionReference.
getCodingSchemeRefs() - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Gets the AbsoluteCodingSchemeVersionReference.
getCodingSchemeRendering(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method getCodingSchemeRendering.
getCodingSchemeRendering() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method getCodingSchemeRendering.Returns the contents of the collection in an Array.
getCodingSchemeRenderingCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method getCodingSchemeRenderingCount.
getCodingSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
getCodingSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
getCodingSchemes() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getCodingSchemes() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'codingSchemes'.
getCodingSchemeService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the coding scheme service.
getCodingSchemeService() - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Gets the coding scheme service.
getCodingSchemesInValueSetDefinition(URI) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getCodingSchemesInValueSetDefinition(URI) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of coding scheme summary that is referenced by the supplied value set definition.
getCodingSchemeSummary(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method getCodingSchemeSummary.
getCodingSchemeSummary() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method getCodingSchemeSummary.Returns the contents of the collection in an Array.
getCodingSchemeSummary() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Returns the value of field 'codingSchemeSummary'.
getCodingSchemeSummaryByUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme summary by uri and version.
getCodingSchemeSummaryByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeSummaryByUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Gets the coding scheme summary by uri and version.
getCodingSchemeSummaryByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getCodingSchemeSummaryByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeSummaryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method getCodingSchemeSummaryCount.
getCodingSchemesWithSupportedAssociation(String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the coding schemes who supported association matching with associationName.
getCodingSchemesWithSupportedAssociation(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getCodingSchemesWithSupportedAssociation(String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return the coding schemes who supported association matching with associationName.
getCodingSchemeTag() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getCodingSchemeUid() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getCodingSchemeUid() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getCodingSchemeUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateRelationsBean
Gets the coding scheme id.
getCodingSchemeUId() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Gets the coding scheme id.
getCodingSchemeUId() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Gets the coding scheme id.
getCodingSchemeUId() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
Gets the coding scheme id.
getCodingSchemeUId(String, String) - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Gets the coding scheme id.
getCodingSchemeUId() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Gets the coding scheme u id.
getCodingSchemeUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the coding scheme uid.
getCodingSchemeUid(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
 
getCodingSchemeUid(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
 
getCodingSchemeUIdByNameAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme id by name and version.
getCodingSchemeUIdByNameAndVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeUIdByNameAndVersion(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeUIdByUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme id by uri and version.
getCodingSchemeUIdByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getCodingSchemeUIdByUriAndVersion(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getCodingSchemeUri() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.event.revision.EntityReviseEvent
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId
Gets the coding scheme uri.
getCodingSchemeUri() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getCodingSchemeUri() - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Gets the coding scheme uri.
getCodingSchemeURI() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'codingSchemeURI'.
getCodingSchemeURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Returns the value of field 'codingSchemeURI'.
getCodingSchemeURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Returns the value of field 'codingSchemeURI'.
getCodingSchemeURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'codingSchemeURI'.
getCodingSchemeUri() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Gets the coding scheme uri.
getCodingSchemeURI() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'codingSchemeURI'.
getCodingSchemeUri() - Method in interface org.lexgrid.loader.data.codingScheme.CodingSchemeIdSetter
 
getCodingSchemeUri() - Method in class org.lexgrid.loader.data.codingScheme.SimpleCodingSchemeIdSetter
 
getCodingSchemeUri() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getCodingSchemeUri() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
getCodingSchemeUri() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
getCodingSchemeURI() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getCodingSchemeURIForEntityCodeNamespace(Mappings, String) - Static method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the coding scheme URI that corresponds to the supplied entityCodeNamespace.
getCodingSchemeURIs(ValueSetDefinition) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return a string representation the URI's of all of the coding schemes used in the supplied value domain
getCodingSchemeURN() - Method in class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference
Returns the value of field 'codingSchemeURN'.
getCodingSchemeVersion() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
getCodingSchemeVersion() - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Gets the coding scheme version.
getCodingSchemeVersion() - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Gets the coding scheme version.
getCodingSchemeVersion() - Method in class org.lexevs.dao.database.service.event.revision.EntityReviseEvent
Gets the coding scheme version.
getCodingSchemeVersion() - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId
Gets the coding scheme version.
getCodingSchemeVersion() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getCodingSchemeVersion() - Method in class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference
Returns the value of field 'codingSchemeVersion'.
getCodingSchemeVersion() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Returns the value of field 'codingSchemeVersion'.
getCodingSchemeVersion() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'codingSchemeVersion'.
getCodingSchemeVersion() - Method in interface org.lexgrid.loader.data.codingScheme.CodingSchemeIdSetter
 
getCodingSchemeVersion() - Method in class org.lexgrid.loader.data.codingScheme.SimpleCodingSchemeIdSetter
 
getCodingSchemeVersion() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getCodingSchemeVersion() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
getCodingSchemeVersion() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
getCodingSchemeVersion() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getCodingSchemeVersionFromSab(String) - Method in class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
 
getCodingSchemeVersionFromSab(String) - Method in interface org.lexgrid.loader.rrf.data.codingscheme.MrsabUtility
 
getCodingSchemeVersionRefList() - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetCodedNodeSet
 
getCodingSchemeVersionRefList() - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetDefinition
 
getCodingSchemeVersions(String) - Method in class org.lexgrid.valuesets.admin.RemoveResolvedValueSet
 
getCodingSchemeVersions(String) - Method in class org.lexgrid.valuesets.admin.RemoveVSResolvedFromCodingSchemes
 
getCodingSchemeXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getColor(VisualItem) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView.NodeColorAction
 
getColor(VisualItem) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView.NodeColorAction
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
getColumnImage(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
getColumnSortType() - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Sort
Gets the column sort type.
getColumnSortTypeForName(String) - Static method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the column sort type for name.
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
getColumnText(Object, int) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
getCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getCombinedPrefix(String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Gets the combined prefix.
getCombinedQueryFromSchemes(List<AbsoluteCodingSchemeVersionReference>, BooleanQuery) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getCombinedQueryFromSchemes(List<AbsoluteCodingSchemeVersionReference>, BooleanQuery) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getCombinedQueryFromSchemes(List<AbsoluteCodingSchemeVersionReference>, BooleanQuery) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getCombinedQueryFromSchemes(List<AbsoluteCodingSchemeVersionReference>, BooleanQuery) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getComment() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getComment(int) - Method in class org.LexGrid.concepts.Entity
Method getComment.
getComment() - Method in class org.LexGrid.concepts.Entity
Method getComment.Returns the contents of the collection in an Array.
getCommentAsReference() - Method in class org.LexGrid.concepts.Entity
Method getCommentAsReference.Returns a reference to '_commentList'.
getCommentCount() - Method in class org.LexGrid.concepts.Entity
Method getCommentCount.
getComments() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getComments() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getCommonEntityDao(List<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getCommonLuceneIndexTemplate() - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getCommonLuceneIndexTemplate(List<AbsoluteCodingSchemeVersionReference>) - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getCommonLuceneIndexTemplate() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getCommonLuceneIndexTemplate(List<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getCommonXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getComparatorForSearchClass(Class<T>) - Method in interface org.LexGrid.LexBIG.Extensions.Query.Sort
Gets the comparator for search class.
getComparatorForSearchClass(Class<T>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
 
getComplementOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getComplementOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getCompleteCodingScheme(String, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Returns entire codingScheme.
getCompleteCodingScheme(String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getCompleteSet() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'completeSet'.
getCompositeGroupComparator() - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
getConcept(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptList
 
getConceptChangeVersions(String, String, Date, Date) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getConceptChangeVersions(String, String, Date, Date) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getConceptChangeVersions(String, ConceptReference, Date, Date) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the concept change versions.
getConceptChangeVersions(String, ConceptReference, Date, Date) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getConceptChangeVersions(ConceptReference, Date, Date) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return a list of all of the coding scheme versions in which the supplied concept changed between the two supplied times (inclusive).
getConceptChangeVersions(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getConceptChangeVersions(String, ConceptReference, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getConceptChangeVersions(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getConceptChangeVersions(String, ConceptReference, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getConceptChangeVersions(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getConceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
getConceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getConceptCode() - Method in class org.LexGrid.LexBIG.DataModel.Core.ConceptReference
Returns the value of field 'conceptCode'.
getConceptcode() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'conceptcode'.
getConceptCodeForURI(URI) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getConceptCodes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getConceptCreateVersion(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getConceptCreateVersion(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getConceptCreationVersion(String, ConceptReference) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the concept creation version.
getConceptCreationVersion(String, ConceptReference) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getConceptCreationVersion(ConceptReference) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the coding scheme version in which the supplied concept was created.
getConceptCreationVersion(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getConceptCreationVersion(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getConceptCreationVersion(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getConceptCreationVersion(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getConceptCreationVersion(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getConceptDC() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getConceptDomain() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getConceptDomain() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'conceptDomain'.
getConceptDomainBindings(String, String) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainBindings(String, String) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Returns list of value set definition URIs that are bound to given concept domain.
getConceptDomainCodedNodeSet(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainCodedNodeSet(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Returns coded node set for concept domain entities.
getConceptDomainCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainCodingScheme(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Gets the concept domain coding scheme.
getConceptDomainCodingSchemeSummary(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainCodingSchemeSummary(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Gets the concept domain coding scheme summary.
getConceptDomainEntitisWithName(String, String, CodingSchemeVersionOrTag, CodedNodeSet.SearchDesignationOption, String, String) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainEntitisWithName(String, String, CodingSchemeVersionOrTag, CodedNodeSet.SearchDesignationOption, String, String) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Returns list of concept domain entities matching the name provided.
getConceptDomainEntity(String, String, String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
getConceptDomainEntity(String, String, String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Returns concept domain entity object of the concept domain id.
getConceptDomainValueFromEntityProperty(Entity, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getConceptName() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'conceptName'.
getConceptProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getConceptReference(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method getConceptReference.
getConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method getConceptReference.Returns the contents of the collection in an Array.
getConceptReferenceCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method getConceptReferenceCount.
getConceptReferenceList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToCodes
 
getConceptReferences() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCountConceptReferenceBean
 
GetConceptReferencesClosure - Class in org.LexGrid.LexBIG.example
 
GetConceptReferencesClosure() - Constructor for class org.LexGrid.LexBIG.example.GetConceptReferencesClosure
 
getConceptReferencesContainingObject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getConceptReferencesContainingObject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getConceptReferencesContainingSubject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getConceptReferencesContainingSubject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getConceptReferencesFromUid(String, List<String>, CodedNodeGraphDao.TripleNode, List<CodedNodeGraphService.Sort>) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getConceptReferencesFromUid(String, List<String>, CodedNodeGraphDao.TripleNode, List<CodedNodeGraphService.Sort>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getConceptReferencesFromUidSource(String, String, List<CodedNodeGraphService.Sort>, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the concept references from uid source.
getConceptReferencesFromUidSource(String, String, List<CodedNodeGraphService.Sort>, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getConceptReferencesFromUidTarget(String, String, List<CodedNodeGraphService.Sort>, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the concept references from uid target.
getConceptReferencesFromUidTarget(String, String, List<CodedNodeGraphService.Sort>, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getConceptRelationships() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getConcepts() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
getConcepts() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceContents
 
getConcepts() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
The function returns a Collection of OBOTerm
getConcurrentMetaData() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getConcurrentMetaData() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getConcurrentMetaData() - Method in class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
getConcurrentMetaData() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getConcurrentMetaData() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getConcurrentMetaData() - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getConfigFileLocation() - Method in class org.lexevs.system.constants.SystemVariables
If the configuration was loaded from a properties file - this will have the path of the properties file.
getConfigResources() - Method in class org.lexevs.dao.database.spring.DynamicPropertyApplicationContext
 
getConnection() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getConnection(String, String) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getConnection(String, Properties) - Method in class org.LexGrid.util.sql.sqlReconnect.ConnectionHelper
 
getConnection(String, Properties) - Method in interface org.LexGrid.util.sql.sqlReconnect.ConnectionHelperIF
 
getConnection() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getConnectionManager() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
getConnectionSummary(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getConnectionSummary(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getConnectionSummary(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
getConnectionSummary() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
Get a summary of the connection parameters.
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
getConnectionSummary() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.OutputFormatInterface
Get a summary of the connection parameters.
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
getConnectionSummary() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
getCononicalDiffValue(String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getConsider() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getConsoleCharacter() - Static method in class org.LexGrid.LexBIG.admin.Util
Read and return a single character based on user input to the Administration console.
getConsoleCharacter() - Static method in class org.lexgrid.valuesets.admin.Util
Read and return a single character based on user input to the Administration console.
getConsoleCharacter() - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Read and return a single character based on user input to the Administration console.
getContainerName() - Method in class org.lexgrid.loader.meta.processor.support.MetaRelationResolver
 
getContainerName(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the container name.
getContainerName() - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getContainerName() - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the container name.
getContainerName() - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getContainerName() - Method in class org.lexgrid.loader.rrf.processor.support.MinimalRrfRelationResolver
 
getContainerName() - Method in class org.lexgrid.loader.umls.processor.support.AuiBasedRelationResolver
 
getContainerName() - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
getContainerName() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
 
getContainerName() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'containerName'.
getContainingRevision() - Method in class org.LexGrid.versions.EntryState
Returns the value of field 'containingRevision'.
getContent() - Method in class org.LexGrid.builtins.TsAnyType
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.commonTypes.EntityDescription
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.commonTypes.Source
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.commonTypes.Text
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
getContent() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfFormalName
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfLocalName
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfSource
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.LexOnt.CsmfVersion
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedAssociation
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedAssociationQualifier
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedCodingScheme
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedConceptDomain
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedContainerName
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedContext
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedDataType
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedEntityType
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedHierarchy
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedLanguage
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedNamespace
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedProperty
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedPropertyLink
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedPropertyQualifier
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedPropertyType
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedRepresentationalForm
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedSortOrder
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedSource
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedSourceRole
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.SupportedStatus
Returns the value of field 'content'.
getContent() - Method in class org.LexGrid.naming.URIMap
Returns the value of field 'content'.
getContents(boolean, boolean) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceReader
 
getContents(boolean, boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
getContext(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method getContext.
getContext() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method getContext.Returns the contents of the collection in an Array.
getContextCount() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method getContextCount.
getContextList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
getControl() - Method in interface org.LexGrid.LexBIG.gui.plugin.TabbedContent
Returns the Control that is placed in the tab
getConvenienceMethods() - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns a cached instance of convenience methods.
getConvenienceMethods() - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns a cached instance of convenience methods.
getCopyright() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'copyright'.
getCopyright(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return copyright text for the given coding scheme; null if not available.
getCopyright() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'copyright'.
getCorrectColumnName(String, String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
getCorrectColumnName(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
getCorrectDaoForIndexVersion(List<T>, LexEvsIndexFormatVersion) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Gets the correct dao for index version.
getCorrectDaoForSchemaVersion(List<T>, LexGridSchemaVersion) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the correct dao for schema version.
GetCountConceptReferenceBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
GetCountConceptReferenceBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.GetCountConceptReferenceBean
 
getCountConceptReferencesContainingObject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getCountConceptReferencesContainingObject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getCountConceptReferencesContainingSubject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getCountConceptReferencesContainingSubject(String, String, List<ConceptReference>, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getCreateConceptForObjectProp() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'createConceptForObjectProp'.
getCreated_by() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getCreateScript() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Gets the creates the script.
getCreation_date() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getCreationScriptPrefix() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Gets the creation script prefix.
getCsCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getCsCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
getCsCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
getCsCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getCsMultiAttribList() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
 
getCsUid() - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getCsVersionList() - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
getCsVersionTag() - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
getCsvReleaseDate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getCsvReleaseDate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
getCsvReleaseDate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
getCsvReleaseDate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getCui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getCui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getCui() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getCui() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getCui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getCui() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getCui1() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getCui2() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getCuiFromAui - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCuiFromAui(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCuiFromAui(String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
 
getCuiFromAuiAndSab - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The get cui from aui and sab.
getCuiFromAuiAndSab(String, String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCuiFromAuiAndSab(String, String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
Gets the cui from aui and sab.
getCuiNumber() - Method in class org.lexgrid.loader.rrf.reader.support.MrconsoCuiNumberBasedSkipPolicy
Gets the cui number.
getCuiNumber() - Method in class org.lexgrid.loader.rrf.reader.support.MrdefCuiNumberBasedSkipPolicy
Gets the cui number.
getCuiNumber() - Method in class org.lexgrid.loader.rrf.reader.support.MrrelCuiNumberBasedSkipPolicy
Gets the cui number.
getCuiNumber() - Method in class org.lexgrid.loader.rrf.reader.support.MrsatCuiNumberBasedSkipPolicy
Gets the cui number.
getCuiNumber() - Method in class org.lexgrid.loader.rrf.reader.support.MrstyCuiNumberBasedSkipPolicy
Gets the cui number.
getCuisFromCode - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCuisFromCode(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getCuisFromCode(String) - Method in interface org.lexgrid.loader.rrf.staging.MrconsoStagingDao
 
getCurrentAssertedValueSetDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current asserted value set dao.
getCurrentAssociationDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current association dao.
getCurrentAssociationDataDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current association data dao.
getCurrentAssociationTargetDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current association target dao.
getCurrentCodedNodeGraphDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current codednodegraph dao.
getCurrentCodingScheme() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getCurrentCodingScheme() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
Gets the current coding scheme.
getCurrentCodingSchemeDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current coding scheme dao.
getCurrentCodingSchemeUri() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
Gets the current coding scheme uri.
getCurrentCodingSchemeUri() - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
getCurrentCodingSchemeUri() - Method in class org.lexgrid.loader.listener.CleanupListener
Gets the current coding scheme uri.
getCurrentCodingSchemeVersion() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
Gets the current coding scheme version.
getCurrentCodingSchemeVersion() - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
getCurrentCodingSchemeVersion() - Method in class org.lexgrid.loader.listener.CleanupListener
Gets the current coding scheme version.
getCurrentEntityDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current entity dao.
getCurrentEntry(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
getCurrentEntry(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getCurrentEntry(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getCurrentEntry(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getCurrentEntry(RevisableAbstractDatabaseService.ParentUidReferencingId, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
getCurrentEntry(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
getCurrentEntry(I, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the current entry.
getCurrentEntryStateUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
getCurrentEntryStateUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getCurrentEntryStateUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getCurrentEntryStateUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getCurrentEntryStateUid(RevisableAbstractDatabaseService.ParentUidReferencingId, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
getCurrentEntryStateUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
getCurrentEntryStateUid(I, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the current entry state uid.
getCurrentFocus() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the current focus.
getCurrentFocus() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the current focus.
getCurrentIndexVersion() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Gets the current index version.
getCurrentPersistenceScheme() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
Gets the current persistence scheme.
getCurrentPersistenceScheme() - Method in class org.lexevs.system.constants.SystemVariables
 
getCurrentPickListDefinitionDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current pick list dao.
getCurrentPickListEntryNodeDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current pick list entry node dao.
getCurrentValueSetDefinitionDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current value set definition dao.
getCurrentValueSetHiearchyDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current value set hierarchy dao.
getCurrentVersion() - Method in class org.lexevs.dao.database.access.DaoManager
 
getCurrentVSDefinitionEntryDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current value set definition entry dao.
getCurrentVsEntryStateDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current value set EntryState dao.
getCurrentVsPropertyDao() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the current value set property dao.
getCurver() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getCvf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getCvf() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getCxn() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getCxty() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getDaoCallbackService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the dao callback service.
getDaoManager() - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Gets the dao manager.
getDaoManager() - Method in class org.lexevs.dao.database.service.daocallback.DaoManagerDaoCallbackService
Gets the dao manager.
getDatabase() - Method in class org.lexgrid.loader.listener.CleanupListener
 
getDatabaseRegistry() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
Gets the database registry.
getDatabaseRegistry() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Gets the database registry.
getDatabaseServiceManager() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
Gets the database service manager.
getDatabaseServiceManager() - Method in class org.lexevs.dao.database.lazyload.AbstractLazyLoadable
Gets the database service manager.
getDatabaseServiceManager() - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
getDatabaseServiceManager() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getDatabaseServiceManager() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
getDatabaseServiceManager() - Method in class org.lexevs.locator.LexEvsServiceLocator
Gets the database service manager.
getDatabaseServiceManager() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the database service manager.
getDatabaseServiceManager() - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.database.key.AssociationPredicateCreatingKeyResolver
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.database.key.DatabaseServiceEntityKeyResolver
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
getDatabaseServiceManager() - Method in class org.lexgrid.loader.writer.AbstractDatabaseServiceWriter
 
getDatabaseType() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Gets the database type.
getDatabaseType() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Gets the database type.
getDatabaseType() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getDatabaseType() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Gets the database type.
getDatabaseType() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
Gets the database type.
getDatabaseType() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Gets the database type.
getDatabaseType(DataSource) - Static method in enum org.lexevs.dao.database.type.DatabaseType
Gets the database type.
getDatabaseType() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the database type.
getDatabaseType() - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
Gets the database type.
getDatabaseType() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
getDatabaseType() - Method in class org.LexGrid.util.sql.GenericSQLModifier
 
getDatabaseType() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
Returns the specific database type
getDatabaseUtility() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Gets the database utility.
getDatabaseUtility() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getDatabaseUtility() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Gets the database utility.
getDatabaseUtility() - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
getDataSource() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Gets the data source.
getDataSource() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Gets the data source.
getDataSource() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getDataSource() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Gets the data source.
getDataSource() - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Gets the data source.
getDataSource() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
Gets the data source.
getDataSource() - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
Gets the data source.
getDataSource() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the data source.
getDataSource() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the data source.
getDatatype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDatatype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getDataType() - Method in class org.LexGrid.commonTypes.Text
Returns the value of field 'dataType'.
getDataType() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Returns the value of field 'dataType'.
getDataTypePropertySwitch() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getDataTypePropertySwitch() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getDatatypePropSwitch() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'datatypePropSwitch'.
getDatatypeValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDatatypeValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getDate() - Method in class org.LexGrid.LexBIG.gui.VersionProperties
 
getDateForVersion(String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getDateForVersion(String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getDateForVersion(String, String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
 
getDateForVersion(String, String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getDateForVersion(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
getDateForVersion(String) - Method in interface org.LexGrid.LexBIG.History.HistoryService
 
getDateForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getDateForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getDateForVersion(String) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getDb2Name() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getDbCheckSql() - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Gets the db check sql.
getDbCheckSql() - Method in class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
 
getDBCodingSchemeEntry(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the dB coding scheme entry.
getDBEntries() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the db entries.
getDbName() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the db name.
getdbName() - Method in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
Gets the db name.
getDbSchemaDescription() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the db schema description.
getDbSchemaVersion() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the db schema version.
getDbUri() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the db uri.
getDbUrl() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
Gets the db url.
getDbxref() - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
getDbXrefs() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getDeactivateDate(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the deactivate date.
getDeactivateDate() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Returns the value of field 'deactivateDate'.
getDeactivationDate() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the deactivation date.
getDecoratedProcessor() - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
 
getDef() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getDefaultCodingScheme() - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
getDefaultCodingScheme() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'defaultCodingScheme'.
getDefaultCodingSchemePrefix() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
Gets the default coding scheme prefix.
getDefaultEntityCodeNamespace() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'defaultEntityCodeNamespace'.
getDefaultHierarchyVSRelation() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getDefaultHistoryPrefix() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
Gets the default history prefix.
getDefaultLanguage() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getDefaultLanguage() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'defaultLanguage'.
getDefaultLanguage() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'defaultLanguage'.
getDefaultLanguage() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Gets the default language.
getDefaultLanguage() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'defaultLanguage'.
getDefaultMappingRelationsContainer(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
getDefaultNameSpace() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getDefaultNamespaceFromCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.NullNamespaceResolver
Gets the default namespace from coding scheme.
getDefaultPickContext(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method getDefaultPickContext.
getDefaultPickContext() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getDefaultPickContext.Returns the contents of the collection in an Array.
getDefaultPickContextAsReference() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getDefaultPickContextAsReference.Returns a reference to '_defaultPickContextList'.
getDefaultPickContextCount() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getDefaultPickContextCount.
getDefaultPresentation(Entity) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
 
getDefaultRelationshipIDPrefix() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getDefaultSortOrder() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'defaultSortOrder'.
getDefaultSource() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getDefaultSourceIfNull(String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getDefaultTableKeys() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
getDefaultValueSetServiceForVersion(AssertedValueSetParameters) - Static method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getDefaultValueSetServiceForVersion(AssertedValueSetParameters, LexBIGService) - Static method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getDefinedSource(String, Entity) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getDefiningCodeSystemURN() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getDefiningCodeSystemVersion() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getDefinition() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getDefinition() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getDefinition() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
 
getDefinition(int) - Method in class org.LexGrid.concepts.Entity
Method getDefinition.
getDefinition() - Method in class org.LexGrid.concepts.Entity
Method getDefinition.Returns the contents of the collection in an Array.
getDefinition() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getDefinitionAsReference() - Method in class org.LexGrid.concepts.Entity
Method getDefinitionAsReference.Returns a reference to '_definitionList'.
getDefinitionCount() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
 
getDefinitionCount() - Method in class org.LexGrid.concepts.Entity
Method getDefinitionCount.
getDefinitionEntry() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getDefinitionEntry(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getDefinitionEntry.
getDefinitionEntry() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getDefinitionEntry.Returns the contents of the collection in an Array.
getDefinitionEntryAsReference() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getDefinitionEntryAsReference.Returns a reference to '_definitionEntryList'.
getDefinitionEntryCount() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getDefinitionEntryCount.
getDefinitionEntryUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
getDefinitionEntryUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getDefinitions() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getDefinitionSources() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getDegreeOfFidelity() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getDegreeOfFidelity() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
getDegreeOfFidelity() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'degreeOfFidelity'.
getDegreeOfFidelity(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getDegreeOfFidelity(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getDegreeOfFidelity(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getDegreeOfFidelity(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the degree of fidelity.
getDegreeOfFidelity(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getDegreeOfFidelity(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getDegreeOfFidelity(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getDegreeOfFidelity(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getDegreeOfFidelity(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getDegreeOfFidelity(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getDelegate() - Method in class org.lexgrid.loader.processor.AbstractListProcessor
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
 
getDelegate() - Method in class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.processor.BasicListProcessor
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.reader.SkippingItemReader
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.writer.GenericListWriter
Gets the delegate.
getDelegate() - Method in class org.lexgrid.loader.writer.ListWriter
Gets the delegate.
getDelegateSystemResourceService() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
Gets the delegate system resource service.
getDelta(List<T>, List<T>, DaoUtility.Equality<T>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
getDescendants(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getDescendants(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getDescendants(String, ConceptReference) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the descendants.
getDescendants(String, ConceptReference) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getDescendants(ConceptReference) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the list of change events identifying the immediate descendants of the given concept reference.
getDescendants(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getDescendants(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getDescendants(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getDescendants(String, ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getDescendants(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getDescendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
getDescendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getDescription() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
Get the description of the input type.
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
getDescription() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.OutputFormatInterface
The description of the output type.
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
getDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
getDescription() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getDescription() - Method in class org.lexevs.dao.database.access.association.model.DefinedNode
 
getDescription() - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
getDescription() - Method in interface org.lexevs.dao.database.access.tablemetadata.TableMetadataDao
Gets the description.
getDescription() - Method in class org.lexevs.dao.database.ibatis.tablemetadata.parameter.InsertTableMetadataBean
Gets the description.
getDescription() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Returns the value of field 'description'.
getDescription() - Method in interface org.LexGrid.LexBIG.Extensions.Extendable
Return a description of the extension.
getDescription() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getDescription() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getDescription() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getDescription() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getDescriptionForType(int) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
getDesignation() - Method in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
getDesignationForName(String) - Method in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
getDestination() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExportStatus
Returns the value of field 'destination'.
getDetailedText(ResolvedConceptReference, String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns contextual text for the given item in the format [CUI]:[AUI]:[SAB]:[Text].
getDialect() - Method in class org.lexevs.dao.database.spring.DialectSettingPostProcessor
Gets the dialect.
getDialogHandler() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getDiff(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getDifferentFrom() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDifferentFrom() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getDir() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getDirection() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the direction.
getDirection(List<SupportedHierarchy>) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the direction.
getDirection() - Method in class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.MappingSortOption
Gets the direction.
getDirection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the direction.
getDirection(List<SupportedHierarchy>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the direction.
getDirection(boolean, boolean) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
getDirectionalLabel(LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, Association, boolean) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Returns the label to display for the given association and directional indicator.
getDirectionalLabel(String, CodingSchemeVersionOrTag, Association, boolean) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns the label to display for the given association and directional indicator.
getDirectionalLabel(String, CodingSchemeVersionOrTag, Association, boolean) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns the label to display for the given association and directional indicator.
getDirectionalName() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'directionalName'.
getDirectionalNames() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToDirectionalNames
 
getDirectory(String, File) - Method in class org.lexevs.dao.index.lucenesupport.DefaultLuceneDirectoryCreator
 
getDirectory(String, File) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneDirectoryCreator
Gets the directory.
getDirectory() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
getDirectory() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getDirectoryCreator() - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
getDiscriminatingValue(Mrconso) - Method in class org.lexgrid.loader.meta.reader.support.MetaMrconsoDiscriminator
 
getDiscriminatingValue(Mrrel) - Method in class org.lexgrid.loader.meta.reader.support.MetaMrrelDiscriminator
 
getDiscriminatingValue(Mrconso) - Method in class org.lexgrid.loader.meta.reader.support.MrconsoMetaEntityGroupDiscriminator
 
getDiscriminatingValue(Mrdef) - Method in class org.lexgrid.loader.meta.reader.support.MrdefMetaEntityGroupDiscriminator
 
getDiscriminatingValue(Mrrel) - Method in class org.lexgrid.loader.meta.reader.support.MrrelMetaEntityGroupDiscriminator
 
getDiscriminatingValue(Mrsat) - Method in class org.lexgrid.loader.meta.reader.support.MrsatMetaEntityGroupDiscriminator
 
getDiscriminatingValue(Mrsty) - Method in class org.lexgrid.loader.meta.reader.support.MrstyMetaEntityGroupDiscriminator
 
getDiscriminatingValue(T) - Method in interface org.lexgrid.loader.reader.support.GroupDiscriminator
Returning Object MUST implement 'equals()'.
getDiscriminatingValue(Mrdoc) - Method in class org.lexgrid.loader.rrf.reader.support.MrdocDiscriminator
 
getDiscriminatingValue(Mrsty) - Method in class org.lexgrid.loader.rrf.reader.support.MrstyGroupDiscriminator
 
getDiscriminatingValue(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityGroupDiscriminator
 
getDiscriminatingValue(Mrconso) - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrconsoGroupDiscriminator
 
getDiscriminatingValue(Mrrel) - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrrelGroupDiscriminator
 
getDisjointUnion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDisjointWith() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDisjointWith() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getDistinctEntityNamespacesFromCode(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getDistinctEntityNamespacesFromCode(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getDistinctEntityNamespacesFromCode(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getDistinctEntityTypesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct entity types of coding scheme.
getDistinctEntityTypesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctEntityTypesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctFormatsOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct formats of coding scheme.
getDistinctFormatsOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctFormatsOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctLanguagesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct languages of coding scheme.
getDistinctLanguagesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctLanguagesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctNamespacesOfCode(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Gets the distinct namespaces of a code.
getDistinctNamespacesOfCode(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getDistinctNamespacesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct namespaces of coding scheme.
getDistinctNamespacesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctNamespacesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctPropertyNameAndType(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct property name and type.
getDistinctPropertyNameAndType(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctPropertyNameAndType(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctPropertyNamesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct property names of coding scheme.
getDistinctPropertyNamesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctPropertyNamesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctPropertyQualifierNamesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct property qualifier names of coding scheme.
getDistinctPropertyQualifierNamesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctPropertyQualifierNamesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctPropertyQualifierTypesOfCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the distinct property qualifier types of coding scheme.
getDistinctPropertyQualifierTypesOfCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getDistinctPropertyQualifierTypesOfCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getDistinctSourceNodesForAssociationPredicate(String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getDistinctSourceNodesForAssociationPredicate(String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getDistinctSourceTriples(String, String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getDistinctSourceTriples() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
getDistinctTargetNodesForAssociationPredicate(String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getDistinctTargetNodesForAssociationPredicate(String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getDistinctTargetTriples(String, String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getDistinctTargetTriples(String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getDocIdSet(Filter) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getDocIdSet(Filter) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getDocIdSet(Filter) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getDocIdSet(Filter) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getDockey() - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
getDocument() - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
getDocumentById(int) - Method in interface org.lexevs.dao.index.access.entity.CommonEntityDao
 
getDocumentById(String, String, int) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
getDocumentById(String, String, int, Set<String>) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
getDocumentById(String, String, int) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
getDocumentById(String, String, int, Set<String>) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
getDocumentById(int) - Method in class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
getDocumentById(int) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getDocumentById(int, Set<String>) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getDocumentById(int, StoredFieldVisitor) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getDocumentById(int, StoredFieldVisitor) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getDocumentById(int) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getDocumentById(int, Set<String>) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getDocumentById(int, StoredFieldVisitor) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getDocumentById(int) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getDocumentById(int, Set<String>) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getDocumentById(int, StoredFieldVisitor) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getDocumentById(int) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getDocumentById(int, Set<String>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getDocumentById(String, String, int) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
getDocumentById(String, String, int, Set<String>) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
getDocumentById(String, String, int) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getDocumentById(String, String, int, Set<String>) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getDocumentFromCommonIndexById(List<AbsoluteCodingSchemeVersionReference>, int) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
getDocumentFromCommonIndexById(List<AbsoluteCodingSchemeVersionReference>, int) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getDocumentId() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Gets the document id.
getDomain() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getDomain() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getDomain() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getDriver() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getDriver() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getDriverClass() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
Gets the driver class.
getDriverClassLoader() - Static method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getDropScript() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Gets the drop script.
getDropScriptPrefix() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Gets the drop script prefix.
getEarliestBaseLine(String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getEarliestBaseLine(String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getEarliestBaseLine(String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the earliest base line.
getEarliestBaseLine(String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getEarliestBaseline() - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the earliest baseline version in the list.
getEarliestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getEarliestBaseLine(String) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getEarliestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getEarliestBaseLine(String) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getEarliestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getEditaction() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'editaction'.
getEditActionList(String, String, Date) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getEditActionList(String, String, Date, Date) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getEditActionList(String, String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getEditActionList(String, String, Date) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getEditActionList(String, String, Date, Date) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getEditActionList(String, String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getEditActionList(String, ConceptReference, Date) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the edits the action list.
getEditActionList(String, ConceptReference, Date, Date) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the edits the action list.
getEditActionList(String, ConceptReference, URI) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the edits the action list.
getEditActionList(String, ConceptReference, Date) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getEditActionList(String, ConceptReference, Date, Date) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getEditActionList(String, ConceptReference, URI) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getEditActionList(ConceptReference, CodingSchemeVersion) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the list of available NCI-defined change events for the given concept and coding scheme version.
getEditActionList(ConceptReference, Date, Date) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the list of available NCI-defined change events for the given concept and date range.
getEditActionList(ConceptReference, URI) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return the list of NCI-defined change events for the given concept and release; empty if not applicable.
getEditActionList(ConceptReference, CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getEditActionList(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getEditActionList(ConceptReference, URI) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getEditActionList(String, ConceptReference, CodingSchemeVersion) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getEditActionList(String, ConceptReference, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getEditActionList(String, ConceptReference, URI) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getEditActionList(ConceptReference, CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getEditActionList(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getEditActionList(ConceptReference, URI) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getEditActionList(String, ConceptReference, CodingSchemeVersion) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getEditActionList(String, ConceptReference, Date, Date) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getEditActionList(String, ConceptReference, URI) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getEditActionList(ConceptReference, CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getEditActionList(ConceptReference, Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getEditActionList(ConceptReference, URI) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getEditDate() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'editDate'.
getEditHistory() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'editHistory'.
getEditHistoryEntryPoint() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
getEditOrder() - Method in class org.LexGrid.versions.Revision
Returns the value of field 'editOrder'.
getEffectiveDate() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'effectiveDate'.
getEffectiveDate() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'effectiveDate'.
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.DefinitionEntryContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionContentProvider
 
getElements(Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceContentProvider
 
getEmailTo() - Method in class org.lexevs.system.constants.SystemVariables
 
getEMFSpecificOptions(InputFormatInterface, OutputFormatInterface, OptionHolder) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.CombinationOptions
 
getEndTime() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'endTime'.
getEnitiesForAssociationAndTargetEntity(String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
getEntities(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
getEntities(String, List<String>) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntities(String, List<String>, List<String>, List<String>) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntities(String, List<String>, List<String>, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntities(String, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntities(String, String, int, int) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the entities.
getEntities(String, String, int, int) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntities() - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Gets the entities.
getEntities(String, List<String>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntities(String, List<String>, List<String>, List<String>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntities() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'entities'.
getEntitiesForAssociation(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
getEntitiesForUidMap(List<String>) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getEntitiesForUidMap(List<String>) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getEntitiesWithUidMap(String, List<String>, List<String>, List<String>) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntitiesWithUidMap(String, List<String>, List<String>, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntitiesWithUidMap(String, List<String>, List<String>, List<String>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntity() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver.EntityExceptionPair
 
getEntity() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
Gets the entity.
getEntity(String, String, String, String) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the entity.
getEntity(String, String, String, String, List<String>, List<String>) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the entity.
getEntity(String, String, String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntity(String, String, String, String, List<String>, List<String>) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntity() - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Gets the entity.
getEntity() - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Gets the entity.
getEntity(int) - Method in class org.LexGrid.concepts.Entities
Method getEntity.
getEntity() - Method in class org.LexGrid.concepts.Entities
Method getEntity.Returns the contents of the collection in an Array.
getEntity() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'entity'.
getEntity(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getEntity(String, String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the entity.
getEntityAsReference() - Method in class org.LexGrid.concepts.Entities
Method getEntityAsReference.Returns a reference to '_entityList'.
getEntityAssnsGuid() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
GetEntityAssnUidsBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
GetEntityAssnUidsBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsBean
 
GetEntityAssnUidsCountBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
GetEntityAssnUidsCountBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getEntityByCodeAndNamespace(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Gets the entity by code and namespace.
getEntityByCodeAndNamespace(String, String, String, List<String>, List<String>) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntityByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityByCodeAndNamespace(String, String, String, List<String>, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityByCodeAndNamespace(String, String, String, List<String>, List<String>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityByCodeAndNamespace(String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
getEntityByEntryStateUid(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityByUId(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntityByUId(String, String, List<String>, List<String>) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntityByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityByUId(String, String, List<String>, List<String>) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityByUId(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityByUId(String, String, List<String>, List<String>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityCode() - Method in class org.lexevs.dao.database.access.association.model.Node
 
getEntityCode() - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
getEntityCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getEntityCode() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getEntityCode() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getEntityCode() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'entityCode'.
getEntityCode(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrconsoEntityCodeResolver
 
getEntityCode(Mrdef) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrdefEntityCodeResolver
 
getEntityCode(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrrelEntityCodeResolver
 
getEntityCode(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatEntityCodeResolver
 
getEntityCode(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstyEntityCodeResolver
 
getEntityCode(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
 
getEntityCode(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
getEntityCode(T) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
 
getEntityCode(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
getEntityCode(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the entity code.
getEntityCode(T) - Method in interface org.lexgrid.loader.processor.support.EntityCodeResolver
Gets the entity code.
getEntityCode(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the entity code.
getEntityCode(Object) - Method in class org.lexgrid.loader.processor.support.NoopEntityCodeResolver
 
getEntityCode(T) - Method in interface org.lexgrid.loader.processor.support.PropertyLinkResolver
Gets the entity code.
getEntityCode(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the entity code.
getEntityCode(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityCodeResolver
 
getEntityCode(Mrdef) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrdefEntityCodeResolver
 
getEntityCode(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrrelEntityCodeResolver
 
getEntityCode(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrsatEntityCodeResolver
 
getEntityCode() - Method in class org.LexGrid.naming.SupportedAssociation
Returns the value of field 'entityCode'.
getEntityCode() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
getEntityCode() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'entityCode'.
getEntityCode() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'entityCode'.
getEntityCode() - Method in class org.LexGrid.valueSets.PickListEntryExclusion
Returns the value of field 'entityCode'.
getEntityCodeAndCodingScheme(T) - Method in interface org.lexgrid.loader.processor.support.EntityCodeAndCodingSchemeResolver
Gets the entity code and coding scheme.
getEntityCodeAndCodingScheme(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.UmlsSourceEntityCodeAndCodingSchemeResolver
 
getEntityCodeAndCodingScheme(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.UmlsTargetEntityCodeAndCodingSchemeResolver
 
getEntityCodeFromValueSetDefinition(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getEntityCodeNamespace() - Method in class org.lexevs.dao.database.access.association.model.Node
 
getEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getEntityCodeNamespace() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'entityCodeNamespace'.
getEntityCodeNamespace(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
getEntityCodeNamespace(T) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
 
getEntityCodeNamespace(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
getEntityCodeNamespace(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the entity code namespace.
getEntityCodeNamespace(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the entity code namespace.
getEntityCodeNamespace(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
 
getEntityCodeNamespace(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getEntityCodeNamespace(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getEntityCodeNamespace(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getEntityCodeNamespace(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getEntityCodeNamespace(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getEntityCodeNamespace() - Method in class org.LexGrid.naming.SupportedAssociation
Returns the value of field 'entityCodeNamespace'.
getEntityCodeNamespace() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
getEntityCodeNamespace() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'entityCodeNamespace'.
getEntityCodeNamespace() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'entityCodeNamespace'.
getEntityCodeNamespace() - Method in class org.LexGrid.valueSets.PickListEntryExclusion
Returns the value of field 'entityCodeNamespace'.
getEntityCodeResolver() - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Gets the entity code resolver.
getEntityCodeResolver() - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
Gets the entity code resolver.
getEntityCount(String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Gets the entity count.
getEntityCount(String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityCount(String, String) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the entity count.
getEntityCount(String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntityCount(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityCount() - Method in class org.LexGrid.concepts.Entities
Method getEntityCount.
getEntityDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the entity dao.
getEntityDao() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Gets the entity dao.
getEntityDao(String, String) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Gets the entity dao.
getEntityDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the entity daos.
getEntityDaos() - Method in class org.lexevs.dao.index.access.IndexDaoManager
Gets the entity daos.
getEntityDescription(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntityDescription(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityDescription(String, String, String, String) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the entity description.
getEntityDescription(String, String, String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntityDescription(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityDescription() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the entity description.
getEntityDescription() - Method in class org.LexGrid.commonTypes.Describable
Returns the value of field 'entityDescription'.
getEntityDescription() - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
Returns the value of field 'entityDescription'.
getEntityDescription() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'entityDescription'.
getEntityDescription(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns the entity description for the given code.
getEntityDescription(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns the entity description for the given code.
getEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the entity description.
getEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getEntityDescription(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Returns the entity description for the given code.
getEntityDescription() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'entityDescription'.
getEntityDescription(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
getEntityDescription(T) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
 
getEntityDescription(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the entity description.
getEntityDescription(T) - Method in interface org.lexgrid.loader.processor.support.EntityDescriptionResolver
Gets the entity description.
getEntityDescription(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the entity description.
getEntityDescription(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultMrconsoEntityDescriptionResolver
 
getEntityDescription(Property) - Method in class org.lexgrid.loader.rrf.processor.support.EntityPropertyEntityDescriptionResolver
 
getEntityDescriptionResolver() - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Gets the entity description resolver.
getEntityDescriptionText(EntityDescription) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
getEntityforTopNodeEntityCode(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getEntityforTopNodeEntityCode(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getEntityGuid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.model.EntityReferencingAssociatedConcept
 
getEntityId() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Gets the entity id.
getEntityIdForCode(String, String, String) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
getEntityIndexer() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getEntityIndexer() - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
getEntityIndexer() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getEntityIndexer() - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getEntityIndexer() - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getEntityIndexService() - Method in class org.lexevs.dao.index.service.IndexServiceManager
Gets the entity index service.
getEntityIndexService() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the entity index service.
getEntityIndexService() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
 
getEntityKeyResolver() - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
 
getEntityNamespace(T) - Method in interface org.lexgrid.loader.processor.support.EntityNamespaceResolver
Gets the entity namespace.
getEntityNamespace(Object) - Method in class org.lexgrid.loader.processor.support.SameAsCodingSchemeNameEntityNamespaceResolver
 
getEntityNamespaceResolver() - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Gets the entity namespace resolver.
getEntityNamespaceResolver() - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
getEntityProperties(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getEntityProperties(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getEntityReference() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'entityReference'.
getEntityResolver() - Method in class org.lexgrid.loader.processor.EntityProcessor
Gets the entity resolver.
getEntityService() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Gets the entity service.
getEntityService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the entity service.
getEntityService() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Gets the entity service.
getEntityTables() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
getEntityType(int) - Method in class org.LexGrid.concepts.Entity
Method getEntityType.
getEntityType() - Method in class org.LexGrid.concepts.Entity
Method getEntityType.Returns the contents of the collection in an Array.
getEntityType(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method getEntityType.
getEntityType() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method getEntityType.Returns the contents of the collection in an Array.
getEntityTypeAsReference() - Method in class org.LexGrid.concepts.Entity
Method getEntityTypeAsReference.Returns a reference to '_entityTypeList'.
getEntityTypeCount() - Method in class org.LexGrid.concepts.Entity
Method getEntityTypeCount.
getEntityTypeCount() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method getEntityTypeCount.
getEntityTypes() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getEntityTypes() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getEntityTypes(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaEntityResolver
 
getEntityTypes(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
 
getEntityTypes(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityResolver
 
getEntityTypeTablePrefix() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
getEntityUId(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Gets the entity id.
getEntityUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationEntityBean
 
getEntityUId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntityUId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Gets the entity id.
getEntityUId(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntityUid() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getEntityUid() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getEntityUpdates() - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Gets the entity updates.
getEntityVersions(int) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method getEntityVersions.
getEntityVersions() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method getEntityVersions.Returns the contents of the collection in an Array.
getEntityVersionsCount() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method getEntityVersionsCount.
getEntriesForUri(String) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getEntriesForUri(String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getEntriesForUri(String) - Method in interface org.lexevs.registry.service.Registry
Gets the entries for uri.
getEntriesForUri(String) - Method in class org.lexevs.registry.service.XmlRegistry
 
getEntry(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the entry.
getEntry(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method getEntry.
getEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method getEntry.Returns the contents of the collection in an Array.
getEntry(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method getEntry.
getEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method getEntry.Returns the contents of the collection in an Array.
getEntry(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method getEntry.
getEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method getEntry.Returns the contents of the collection in an Array.
getEntry(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method getEntry.
getEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method getEntry.Returns the contents of the collection in an Array.
getEntry(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method getEntry.
getEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method getEntry.Returns the contents of the collection in an Array.
getEntry(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method getEntry.
getEntry() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method getEntry.Returns the contents of the collection in an Array.
getEntryAsReference() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method getEntryAsReference.Returns a reference to '_entryList'.
getEntryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method getEntryCount.
getEntryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method getEntryCount.
getEntryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method getEntryCount.
getEntryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method getEntryCount.
getEntryCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method getEntryCount.
getEntryCount() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method getEntryCount.
getEntryLevel() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'entryLevel'.
getEntryOrder() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getEntryOrder() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
getEntryOrder() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'entryOrder'.
getEntryPointType(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
getEntryState(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntryState() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Gets the entry state.
getEntryState() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'entryState'.
getEntryStateByEntryUidAndRevisionId(String, String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
getEntryStateByEntryUidAndRevisionId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
getEntryStateByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
Gets the entry state by UID.
getEntryStateByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
getEntryStateId() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Gets the entry state id.
getEntryStateId(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
getEntryStateUId(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the entry state id.
getEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getEntryStateUId() - Method in class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Gets the entry state id.
getEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getEntryStateUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getEntryStateUId(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getEntryStateUId(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getEntryTime() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'entryTime'.
getEntryType() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Gets the entry type.
getEntryUId() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Gets the entry id.
getEntryUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
getEntryUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getEntryUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, CodingScheme) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getEntryUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getEntryUid(RevisableAbstractDatabaseService.ParentUidReferencingId, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
getEntryUid(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
getEntryUid(I, T) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the entry uid.
getEnvironment() - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getEquivalentClass() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getEquivalentClass() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getEquivalentCodingScheme() - Method in class org.LexGrid.naming.SupportedNamespace
Returns the value of field 'equivalentCodingScheme'.
getEquivalentProperty() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getEquivalentProperty() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getEraseLogsAfter() - Method in class org.lexevs.system.constants.SystemVariables
 
getError() - Method in class org.LexGrid.LexBIG.Impl.helpers.SAXPrintHandler
Returns the most recent error or fatal error.
getErrorCallbackDatabaseService(T, ErrorCallbackListener) - Method in class org.lexevs.dao.database.service.error.ErrorCallbackDatabaseServiceFactory
Gets the error callback database service.
getErrorCallbackDatabaseServiceFactory() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
getErrorCallbackListener() - Static method in class edu.mayo.informatics.lexgrid.convert.errorcallback.ErrorCallbackListenerFactory
 
getErrorCode() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
 
getErrorCode() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
 
getErrorCode() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.NullNamespaceError
 
getErrorCode() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorCode() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error code.
getErrorCode() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getErrorDescription() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
 
getErrorDescription() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
 
getErrorDescription() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.FatalError
 
getErrorDescription() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.NullNamespaceError
 
getErrorDescription() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorDescription() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error description.
getErrorDescription() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getErrorException() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorException() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error exception.
getErrorException() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getErrorMessage() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorMessage() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error message.
getErrorMessage() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getErrorObject() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorObject() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error object.
getErrorObject() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getErrorObjectDescription() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError
 
getErrorObjectDescription() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError
 
getErrorObjectDescription() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.FatalError
 
getErrorObjectDescription() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.NullNamespaceError
 
getErrorObjectDescription() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Gets the error object description.
getErrorResolutionReport() - Method in interface edu.mayo.informatics.lexgrid.convert.validator.error.ResolvedLoadValidationError
Gets the error resolution report.
getErrorResolutionReport() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorsLogged() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'errorsLogged'.
getErrorTime() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getErrorTime() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the error time.
getErrorTime() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
 
getEvsTreeConverter() - Static method in class org.lexevs.tree.evstree.EvsTreeConverterFactory
Deprecated.
Gets the json converter.
getEvsTreeConverter() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getEvsTreeConverter() - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the evsTree converter.
getEvsTreeConverter() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.EvsTreeConverterFactory
Gets the json converter.
getEvsTreeConverter() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getEvsTreeConverter(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getEvsTreeConverter() - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the evsTree converter.
getEvsTreeConverter(int) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the json converter
getException() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver.EntityExceptionPair
 
getException(Object) - Method in class org.lexevs.dao.database.constants.classifier.mapping.AbstractMappingClassifier
Gets the exception.
getException() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeInsertErrorEvent
Gets the exception.
getExcludesAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getExcludesAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getExclusionEntry() - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Returns the value of field 'exclusionEntry'.
getExistingTableVersion() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
getExpandableStatus() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the expandable status.
getExpandableStatus(String, CodingSchemeVersionOrTag, String, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the expandable status.
getExpandableStatus() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the expandable status.
getExpandableStatus(String, CodingSchemeVersionOrTag, String, String, String, LexEvsTreeDao.Direction, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the expandable status.
getExpandedForm(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Return the detailed name of the given RRF name; null if not available.
getExpectedMap(List<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getExpirationDate() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'expirationDate'.
getExpl() - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
getExporter(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getExporter(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Return an instance of the named export extension.
getExportExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getExportExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getExportExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to export information loaded to a LexBIGService.
getExportExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getExportExtensions() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getExportExtensions() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Returns a description of all registered extensions used to export information loaded to a LexBIGService.
getExtensionBaseClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Returns the value of field 'extensionBaseClass'.
getExtensionClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Returns the value of field 'extensionClass'.
getExtensionDescription(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method getExtensionDescription.
getExtensionDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method getExtensionDescription.Returns the contents of the collection in an Array.
getExtensionDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
Gets the extension description.
getExtensionDescriptionCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method getExtensionDescriptionCount.
getExtensionDescriptions() - Method in class org.lexevs.system.utility.MyClassLoader
Gets the extension descriptions.
getExtensionName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
Returns the value of field 'extensionName'.
getExtensionProvider() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Returns the value of field 'extensionProvider'.
getExtensionRegistry() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getExtensionRegistry() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Returns the object used to manage all externally registered extensions to this service.
getExternalCodingSchemeNameForUserCodingSchemeNameOrId(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the external coding scheme name for user coding scheme name or id.
getExternallyDefinedValueSetsForAssertedSource(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getExternallyDefinedValueSetsForAssertedSourceTest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
getExternalResolvedValueSetCodingSchemes() - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
getExtraWhitespaceCharaters() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.IndexQueryParserFactory
 
getFetchDirection() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getFetchSize() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getField(Field, DatabaseRecord) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
getField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
getField(Object, String) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Gets the field.
getFieldPath(String) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Gets the field path.
getFieldsToTruncate() - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Gets the fields to truncate.
getFileChooseButton(Composite, Text, String[], String[]) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
getFileLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
getFileLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
getFileSaveButton(Composite, Text, String[], String[]) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
getFilter(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getFilter(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getFilter(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns an instance of the filter extension registered with the given name.
getFilteredNodeChildren(String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getFilteredPropertyResolvers() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getFilteredSortedIndividualizedNodeChildren(String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getFilterExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getFilterExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getFilterExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to provide additional filtering of query results.
getFilterExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getFilterExtensions() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getFilterExtensions() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns a description of all registered extensions used to provide additional filtering of query results.
getFilterMapKey(String, String) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getFirstTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
Gets the first term lucene search field.
getFirstTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSubStringSearch
 
getFirstTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SubStringSearch
 
getFixedAssociations() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGStaticMapHolders
 
getFixedAssociations() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
getFixedAtRevision() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the fixed at revision.
getFixedProperties() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGStaticMapHolders
 
getFixedProperties() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
getFixedSources() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
getFMACodingScheme(KnowledgeBase) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGStaticMapHolders
 
getFolderChooseButton(Composite, Text) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
getFolderLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
getFolderLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
getFormalName() - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Gets the formal name.
getFormalName() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'formalName'.
getFormalName() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Returns the value of field 'formalName'.
getFormalName() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'formalName'.
getFormat() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getFormat(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getFormat(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getFormat(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getFormat(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the format.
getFormat(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getFormat(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getFormat(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getFormat(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getFormat(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getFormat(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getFormatVersion() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getForwardName() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
getForwardName() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getForwardName(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicAssociationResolver
 
getForwardName(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the forward name.
getForwardName() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'forwardName'.
getForwardNameList() - Method in class org.lexgrid.loader.rrf.reader.support.MrrelRelationBasedSkipPolicy
 
getFromexpr() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFromid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFromLastIndexOfColonOrHash(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
getFromLastIndexOfColonOrHash(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
getFromres() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFromrule() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFromsid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFromtype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getFullDescription() - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
getFullDescription() - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeSet
 
getFullServiceValueSetTree() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getFullServiceValueSetTree() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
getGeneratedKeys() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getGenericExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getGenericExtension(String, Class<T>) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
 
getGenericExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getGenericExtension(String, Class<T>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getGenericExtension(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getGenericExtension(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns an instance of the application-specific extension registered with the given name.
getGenericExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to implement application-specific behavior that is centrally accessible from a LexBIGService.
getGenericExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getGenericExtensions() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getGenericExtensions() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns a description of all registered extensions used to implement application-specific behavior that is centrally accessible from a LexBIGService.
getGenericOption(String, Class<T>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getGenericOption(String, Class<T>) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the generic option.
getGenericOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getGenericOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the generic option.
getGenericSQLModifier() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
getGenericURL() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
getGetChildrenSqlBuilder() - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
Gets the gets the children sql builder.
getGetChildrenSqlBuilder() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
Gets the gets the children sql builder.
getGetNodeSqlBuilder() - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
Gets the gets the node sql builder.
getGetNodeSqlBuilder() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
Gets the gets the node sql builder.
getGlobalPosition() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Gets the global position.
getGlobalPosition() - Method in class org.lexevs.paging.AbstractPageableIterator
Gets the global position.
getGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
getGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
getGraph() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.Intersection
 
getGraph() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.Union
 
getGraph1() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
Gets the graph1.
getGraph2() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
Gets the graph2.
getGraphdbpwd() - Method in class org.lexevs.system.constants.SystemVariables
 
getGraphdbUrl() - Method in class org.lexevs.system.constants.SystemVariables
 
getGraphdbUser() - Method in class org.lexevs.system.constants.SystemVariables
 
getGraphQueryBuilder() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Gets the graph query builder.
getGroupCui(List<Mrsty>) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
Gets the group cui.
getGroupDiscriminator() - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
Gets the group discriminator.
getGuidFromvalueSetDefinitionURI(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Gets the GUID from value set definition URI
getGuidFromvalueSetDefinitionURI(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getGuidToInstanceMap(String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getGuidToInstanceMap(String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getHcd() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getHCDText(ResolvedConceptReference, String) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns text for an assigned presentation matching the given context identifier (HCD).
getHeapUsage() - Method in class org.LexGrid.util.SimpleMemUsageReporter.Snapshot
 
getHeapUsageDelta(SimpleMemUsageReporter.Snapshot) - Method in class org.LexGrid.util.SimpleMemUsageReporter.Snapshot
 
getHelpText() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
getHelpText() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.BaseOption
Gets the help text.
getHierarchies(String, CodingSchemeVersionOrTag) - Method in class org.lexevs.tree.dao.hierarchy.CachingHierarchyResolver
Deprecated.
 
getHierarchies(String, CodingSchemeVersionOrTag) - Method in interface org.lexevs.tree.dao.hierarchy.HierarchyResolver
Deprecated.
Gets the hierarchies.
getHierarchies(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.CachingHierarchyResolver
 
getHierarchies(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.HierarchyResolver
Gets the hierarchies.
getHierarchy(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.dao.hierarchy.CachingHierarchyResolver
Deprecated.
 
getHierarchy(String, CodingSchemeVersionOrTag, String) - Method in interface org.lexevs.tree.dao.hierarchy.HierarchyResolver
Deprecated.
Gets the hierarchy.
getHierarchy(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.CachingHierarchyResolver
 
getHierarchy(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy.HierarchyResolver
Gets the hierarchy.
getHierarchyIDs(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns the identifiers for hierarchical relationships available for navigation within a coding scheme.
getHierarchyIDs(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyIDs(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Returns the identifiers for hierarchical relationships available for navigation within a coding scheme.
getHierarchyLevelNext(String, CodingSchemeVersionOrTag, String, String, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and its immediate descendants.
getHierarchyLevelNext(String, CodingSchemeVersionOrTag, String, String, boolean, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and its immediate descendants.
getHierarchyLevelNext(String, CodingSchemeVersionOrTag, String, String, boolean, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelNext(String, CodingSchemeVersionOrTag, String, String, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelNext(String, CodingSchemeVersionOrTag, String[], boolean, String, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Primitive method to retrieve next level of hierarchy based on association names and directionality, but could ultimately be linked to several root nodes based on supported hierarchy definitions.
getHierarchyLevelNext(String, String, String, CodingSchemeVersionOrTag, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return a representation of associations between a concept and its immediate descendants.
getHierarchyLevelNextCount(String, CodingSchemeVersionOrTag, String, ConceptReference) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a count of the number of concepts at the next level in the hierarchy.
getHierarchyLevelNextCount(String, CodingSchemeVersionOrTag, String, ConceptReferenceList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns a ConceptReferenceList of CountConceptReference that holds the count of concepts at the next level in the hierarchy.
getHierarchyLevelNextCount(String, CodingSchemeVersionOrTag, String, ConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelNextCount(String, CodingSchemeVersionOrTag, String, ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelNextCount(String, CodingSchemeVersionOrTag, String, ConceptReferenceList, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelNextCountBackwardCompatible(String, CodingSchemeVersionOrTag, String, ConceptReferenceList, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelPrev(String, CodingSchemeVersionOrTag, String, String, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and its immediate ancestor(s).
getHierarchyLevelPrev(String, CodingSchemeVersionOrTag, String, String, boolean, boolean, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and its immediate ancestor(s).
getHierarchyLevelPrev(String, CodingSchemeVersionOrTag, String, String, boolean, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelPrev(String, CodingSchemeVersionOrTag, String, String, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelPrev(String, CodingSchemeVersionOrTag, String, String, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return a representation of associations between a concept and its immediate ancestor(s).
getHierarchyLevelPrevCount(String, CodingSchemeVersionOrTag, String, ConceptReference) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a count of the number of concepts at the previous level in the hierarchy.
getHierarchyLevelPrevCount(String, CodingSchemeVersionOrTag, String, ConceptReferenceList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns a ConceptReferenceList of CountConceptReference that holds the count of concepts at the previous level in the hierarchy.
getHierarchyLevelPrevCount(String, CodingSchemeVersionOrTag, String, ConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyLevelPrevCount(String, CodingSchemeVersionOrTag, String, ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyNodesNext(String, CodingSchemeVersionOrTag, String[], boolean, String, boolean, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Primitive method to retrieve next level of hierarchy based on association names and directionality, but could ultimately be linked to several root nodes based on supported hierarchy definitions.
getHierarchyOrphanedConcepts(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns all concepts that can not be reached by traversing the hierarchy specified by the hierarchyId from the root.
getHierarchyOrphanedConcepts(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String, String, boolean, LexBIGServiceConvenienceMethods.HierarchyPathResolveOption, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and hierarchical root node(s).
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String, String, String, boolean, LexBIGServiceConvenienceMethods.HierarchyPathResolveOption, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return a representation of associations between a concept and hierarchical root node(s).
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String, String, boolean, LexBIGServiceConvenienceMethods.HierarchyPathResolveOption, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String, String, String, boolean, LexBIGServiceConvenienceMethods.HierarchyPathResolveOption, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String[], boolean, String, String, String, boolean, NameAndValueList, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns a list of associations representing navigable paths between the given concept and root node combination.
getHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String, String, String, boolean, LexBIGServiceConvenienceMethods.HierarchyPathResolveOption, NameAndValueList) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return a representation of associations between a concept and hierarchical root node(s).
getHierarchyPathToRootPrim(String, CodingSchemeVersionOrTag, String[], boolean, String, String, String, boolean, NameAndValueList, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Resolves all links representing navigable paths between the start and stop codes for the given association, adding them to the returned association list.
getHierarchyPathToRootPrim(String, CodingSchemeVersionOrTag, String[], boolean, String, String, String, boolean, NameAndValueList, int, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyResolver() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the hierarchy resolver.
getHierarchyResolver() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the hierarchy resolver.
getHierarchyRootCodes(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return a basic array of strings containing root codes for the given hierarchy ID.
getHierarchyRoots(ClaML) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLUtils
Gets the hierarchy roots.
getHierarchyRoots(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns all root nodes for the given hierarchy and coding scheme.
getHierarchyRoots(String, CodingSchemeVersionOrTag, String, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns all root nodes for the given hierarchy and coding scheme.
getHierarchyRoots(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyRoots(String, CodingSchemeVersionOrTag, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyRoots(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Returns all root nodes for the given hierarchy and coding scheme.
getHierarchyRootSet(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns all root nodes for the given hierarchy as a CodeNodeSet, which can be further restricted.
getHierarchyRootSet(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getHierarchyRootSet(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Returns all root nodes for the given hierarchy as a CodeNodeSet, which can be further restricted.
getHierarchyValueSetRoots(String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
getHierarchyValueSetRoots(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getHierarchyValueSetRoots(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getHierarchyValueSetRoots(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
getHierAssocNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Returns the names of the hierarchical associations in use for the LexGrid code system of the given name.
getHierAssocNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Returns the names of the hierarchical associations in use for the LexGrid code system of the given name.
getHierRelas() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Relation names in the RRF (RELA field) for hierarchical associations specific to the source distribution.
getHierRels() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Standard names (REL field in the RRF) for hierarchical associations in the UMLS.
getHistoryAssociationDataByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getHistoryAssociationDataByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getHistoryCodingSchemeByRevision(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the coding scheme by revision.
getHistoryCodingSchemeByRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getHistoryCodingSchemeByRevision(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getHistoryCodingSchemeByRevisionWithHistoryFromHistory() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
getHistoryCodingSchemeByRevisionWithHistoryFromHistoryWithMultiple() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
getHistoryCodingSchemeByRevisionWithLocalName() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
getHistoryCodingSchemeByRevisionWithSource() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
getHistoryDBSchema() - Method in class org.lexevs.system.constants.SystemVariables
 
getHistoryEntityByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getHistoryEntityByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getHistoryEntityByRevision(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getHistoryEntries() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the history entries.
getHistoryEntry(String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the history entry.
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.ParentUidReferencingId, String, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
getHistoryEntryByRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
getHistoryEntryByRevisionId(I, String, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the history entry by revision id.
getHistoryPrefix() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Gets the history prefix.
getHistoryPropertyByRevisionId(String, String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getHistoryPropertyByRevisionId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getHistoryPropertyTable() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
getHistoryRelationByRevisionId(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getHistoryRelationByRevisionId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getHistoryService(String) - Method in class org.LexGrid.LexBIG.Impl.History.HistoryServiceFactory
 
getHistoryService(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getHistoryService(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Resolve a reference to the history api servicing the given coding scheme.
getHistoryTripleByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
getHistoryTripleByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getHistoryVersionFileLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getHlgt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
getHlgt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getHlgt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
getHlgt_costart_sym() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_harts_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_icd10_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_icd9_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_icd9cm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_jart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getHlgt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getHlt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
getHlt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
getHlt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getHlt_costart_sym() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_harts_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_icd10_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_icd9_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_icd9cm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_jart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHlt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getHlt_whoart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getHoldability() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getHolder(ConceptReference, boolean, boolean, int, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
getHost() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getHref() - Method in class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
Returns the value of field 'href'.
getHsqlName() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getHtgt_whoart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getIbatisAssociationDao() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getIbatisCodingSchemeDao() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getIbatisPropertyDao() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Gets the ibatis property dao.
getIbatisRevisionDao() - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
getIbatisVersionsDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Gets the ibatis versions dao.
getIbatisVersionsDao() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Gets the ibatis versions dao.
getIbatisVersionsDao() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Gets the ibatis versions dao.
getIbatisVersionsDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Gets the ibatis versions dao.
getId() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getId() - Method in class org.lexevs.dao.database.ibatis.entity.model.IdableAssociationEntity
 
getId() - Method in class org.lexevs.dao.database.ibatis.entity.model.IdableEntity
 
getId() - Method in class org.lexevs.registry.model.Registry
Gets the id.
getId() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the id.
getId() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Returns the value of field 'id'.
getId() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'id'.
getId(I) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
getId(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the id.
getId(T) - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the id.
getId() - Method in class org.lexgrid.loader.rrf.staging.model.IdableMrconso
Gets the id.
getIdentity() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getIdentity.
getIdentity() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getIdentity.
getIdSpaceMappings() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getIdVal(T) - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the id val.
getIdValueMaxSize() - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
getImeta() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getImportedOBOOntologies() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
getImportedOntologies() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getInclude() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getIncludesAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getIncludesAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getInclusionEntry() - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Returns the value of field 'inclusionEntry'.
getIncomingLinkCount() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getIncomplete() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Returns the value of field 'incomplete'.
getIndex(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getIndex(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Return an instance of the named index extension.
getIndexCreator() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getIndexCreator() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
Gets the index creator.
getIndexCreator() - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getIndexCreator() - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
Gets the index dao manager.
getIndexDaoManager() - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
getIndexDaoManager() - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
Gets the index dao manager.
getIndexDaoManager() - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
getIndexDaoManager() - Method in class org.lexevs.locator.LexEvsServiceLocator
 
getIndexDirectory() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
getIndexDirectory() - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
getIndexDirectory() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
getIndexDirectoryFactory() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getIndexDirectoryName() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getIndexerFormatVersion() - Method in class org.lexevs.dao.index.indexer.AssertedValueSetEntityIndexer
 
getIndexerFormatVersion() - Method in interface org.lexevs.dao.index.indexer.EntityIndexer
 
getIndexerFormatVersion() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
 
getIndexes() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getIndexExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getIndexExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getIndexExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to index information that has been previously loaded to a LexBIGService.
getIndexExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getIndexExtensions() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getIndexExtensions() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Return a list of registered index extensions supported by this service; empty if none are defined.
getIndexInterface(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the index interface.
getIndexLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getIndexLocation(String, String) - Method in class org.lexevs.dao.index.connection.IndexInterface
Gets the index location.
getIndexLocations() - Method in class org.lexevs.system.constants.SystemVariables
 
getIndexMetaData(String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getIndexMetaDataForFileName(String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getIndexMetaDataKeys() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getIndexMetaDataValue(String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getIndexName() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getIndexName() - Method in interface org.lexevs.dao.index.access.entity.CommonEntityDao
 
getIndexName(String, String) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
getIndexName(String, String) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
getIndexName() - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
getIndexName(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getIndexName(String, String) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
getIndexName() - Method in class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
getIndexName(String, String) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getIndexName(String, String) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
getIndexName() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getIndexName() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
getIndexName() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
getIndexName() - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getIndexName() - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getIndexName() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getIndexName(String, String) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
getIndexName(String, String) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getIndexName(AbsoluteCodingSchemeVersionReference) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
getIndexReader() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getIndexReader() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
getIndexReader() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getIndexRegistry() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getIndexRegistry() - Method in class org.lexevs.dao.index.lucene.AbstractFilteringLuceneIndexTemplateDao
 
getIndexRegistry() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getIndexRegistry() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getIndexSearcher() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getIndexSearcher() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
getIndexSearcher() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getIndexServiceManager() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getIndexServiceManager() - Method in class org.lexevs.locator.LexEvsServiceLocator
Gets the index service manager.
getIndividualIdSetter() - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
Gets the individual id setter.
getInheritanceLevel() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.SemNetLoaderPreferences
Returns the value of field 'inheritanceLevel'.
getInOrderConceptReferences() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getInputResource() - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Gets the input resource.
getInsertStatementSQL(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
Returns a specific statement based on a key
getInstance() - Method in class org.lexevs.dao.database.access.association.model.InstanceToGuid
 
getInstance() - Static method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getInstance() - Static method in class org.lexevs.locator.LexEvsServiceLocator
Gets the single instance of LexEvsServiceLocator.
getInstance() - Static method in class org.lexevs.tree.dao.DataSourceFactory
Deprecated.
Gets the single instance of DataSourceFactory.
getInstance() - Static method in class org.lexevs.tree.service.ApplicationContextFactory
Deprecated.
Gets the single instance of ApplicationContextFactory.
getInstance() - Static method in class org.lexevs.tree.service.TreeServiceFactory
Deprecated.
Gets the single instance of TreeServiceFactory.
getInstance() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.DataSourceFactory
Gets the single instance of DataSourceFactory.
getInstance() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.ApplicationContextFactory
Gets the single instance of ApplicationContextFactory.
getInstance() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeServiceFactory
Gets the single instance of TreeServiceFactory.
getInstances() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
The function returns a Collection of OBOInstance
getInstanceToGuidCache(String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getInstanceToGuidCache(String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getIntegerOption(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getIntegerOption(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the integer option.
getIntegerOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getIntegerOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the integer options.
getInterceptor() - Method in class org.lexevs.cache.CacheWrappingFactory
 
getInternalCodingSchemeName() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.GetAllConcepts
 
getInternalCodingSchemeNameForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getInternalCodingSchemeNameForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getInternalCodingSchemeNameForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getInternalCodingSchemeNameForUserCodingSchemeName(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Gets the internal coding scheme name for user coding scheme name.
getInternalId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
getInternalID() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getInternalVersionString() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.GetAllConcepts
 
getInternalVersionStringForTag(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getInternalVersionStringForTag(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getInternalVersionStringForTag(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getInternalVersionStringForTag(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Gets the internal version string for tag.
getInThreadCacheClearingState() - Method in class org.lexevs.cache.CacheRegistry
 
getIntl_ord_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
getIntValue(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGrid
 
getInverseId(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the inverse id.
getInverseName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getInverseOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getInverseOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getInverseOf() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsActive() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'isActive'.
getIsActive(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaEntityResolver
 
getIsActive(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getIsActive(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getIsActive(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getIsActive(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the checks if is active.
getIsActive(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the checks if is active.
getIsActive(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getIsActive(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getIsActive(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getIsActive(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getIsActive(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getIsActive(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityResolver
 
getIsActive(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getIsAnonymous() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'isAnonymous'.
getIsAnonymous(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaEntityResolver
 
getIsAnonymous(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the checks if is anonymous.
getIsAnonymous(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityResolver
 
getIsAntiReflexive(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is anti reflexive.
getIsAntiSymmetric() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsAntiSymmetric(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is anti symmetric.
getIsAntiTransitive(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is anti transitive.
getIsComplete() - Method in class org.LexGrid.LexBIG.DataModel.Core.SupportedElement
Returns the value of field 'isComplete'.
getIsComplete() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'isComplete'.
getIsCyclic() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsDBXrefRepform() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isDBXrefRepform'.
getIsDBXrefSource() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isDBXrefSource'.
getIsDefault() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'isDefault'.
getIsDefined() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'isDefined'.
getIsDefined(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaEntityResolver
 
getIsDefined(I) - Method in interface org.lexgrid.loader.processor.support.EntityResolver
Gets the checks if is defined.
getIsDefined(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityResolver
 
getIsDefining() - Method in class org.LexGrid.relations.AssociatableElement
Returns the value of field 'isDefining'.
getIsForwardNavigable() - Method in class org.LexGrid.naming.SupportedHierarchy
Returns the value of field 'isForwardNavigable'.
getIsFunctional(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is functional.
getIsImported() - Method in class org.LexGrid.naming.SupportedCodingScheme
Returns the value of field 'isImported'.
getIsInferred() - Method in class org.LexGrid.relations.AssociatableElement
Returns the value of field 'isInferred'.
getIsLocked() - Method in class org.lexevs.registry.model.RegistryEntry
 
getIsMapping() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'isMapping'.
getIsNavigable() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
getIsNavigable() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
Returns the value of field 'isNavigable'.
getIsNavigable() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getIsNavigable(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is navigable.
getIsNavigable() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'isNavigable'.
getIsoMap() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getIsoMap() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getIsoMap() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getIsoMap() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
getIsoMap() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
getISOString(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getIspref() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getIsPreferred() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getIsPreferred() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
getIsPreferred() - Method in class org.LexGrid.concepts.Definition
Returns the value of field 'isPreferred'.
getIsPreferred() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'isPreferred'.
getIsReflexive() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsReflexive(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is reflexive.
getIsReverseFunctional(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is reverse functional.
getIsSingleIndex() - Method in class org.lexevs.system.constants.SystemVariables
 
getIsSymmetric() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsSymmetric(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is symmetric.
getIsTransitive() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getIsTransitive() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
getIsTransitive(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the checks if is transitive.
getIsTransitive() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'isTransitive'.
getIsTransitiveManaged() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isTransitiveManaged'.
getItem() - Method in class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
getItem1List() - Method in class org.lexgrid.loader.reader.support.CompositeReaderChunk
Gets the item1 list.
getItem2List() - Method in class org.lexgrid.loader.reader.support.CompositeReaderChunk
Gets the item2 list.
getIteratorIdleTime() - Method in class org.lexevs.system.constants.SystemVariables
 
getJarFileLocations() - Method in class org.lexevs.system.constants.SystemVariables
 
getJavaClass() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getJavaClass.
getJavaClass() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getJavaClass.
getJobExecution() - Method in interface org.LexGrid.LexBIG.Extensions.Load.SpringBatchLoader
 
getJobExecution() - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
getJobRepositoryManager() - Method in class org.lexgrid.loader.listener.CleanupListener
Gets the job repository manager.
getJsonConverter() - Static method in class org.lexevs.tree.json.JsonConverterFactory
Deprecated.
Gets the json converter.
getJsonConverter() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getJsonConverter() - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the json converter.
getJsonConverter() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.JsonConverterFactory
Gets the json converter.
getJsonConverter() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getJsonConverter(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getJsonConverter() - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the json converter.
getJsonConverter(int) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the evsTree converter
getKey() - Method in class org.lexevs.dao.database.connection.SQLConnectionInfo
Gets the key.
getKey() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Gets the key.
getKey() - Method in class org.lexevs.dao.database.connection.SQLInterface
Gets the key.
getKey(Object) - Method in class org.lexevs.dao.database.key.COMBKeyGenerator
 
getKey(Object) - Method in class org.lexevs.dao.database.key.Java5UUIDKeyGenerator
 
getKey(I) - Method in interface org.lexevs.dao.database.key.KeyProvider
Gets the key.
getKey(Object) - Method in class org.lexevs.dao.database.key.NanoTimeLongKeyGenerator
 
getKey() - Method in class org.lexevs.system.model.LocalCodingScheme
Gets the key.
getKey() - Static method in class org.lexevs.system.utility.CryptoUtility
Gets the key.
getKey(String, String) - Static method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getKey() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getKey() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getKey(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getKey(Mrconso) - Method in class org.lexgrid.loader.meta.staging.processor.AuiToCuiProcessor
 
getKey(I) - Method in class org.lexgrid.loader.staging.processor.AbstractKeyValueProcessor
Gets the key.
getKey() - Method in class org.lexgrid.loader.staging.support.KeyValuePair
Gets the key.
getKeyedTreeItem(Object) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
getKeyForAssociationInstanceId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getKeyForAssociationInstanceId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Gets the key for association instance id.
getKeyFromMethod(String, String, Object[], Annotation[][]) - Method in class org.lexevs.cache.AbstractMethodCachingBean
Gets the key from method.
getKeyLength() - Method in class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
getKeyLength() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Gets the key length.
getKeyLength() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
getKeys() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
getKeys() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
getKeys() - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
getKeyType() - Method in class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
getKeyType() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Gets the key type.
getKeyType() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
getKindDefList(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getKnownChildrenCodes() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Gets the known children codes.
getKnownChildrenCodes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Gets the known children codes.
getLangauage() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getLanguage() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
getLanguage() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
getLanguage() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getLanguage() - Method in class org.LexGrid.commonTypes.Property
Returns the value of field 'language'.
getLanguage() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
getLanguage() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingProperties
 
getLanguage(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getLanguage(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getLanguage(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getLanguage(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the language.
getLanguage(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getLanguage(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getLanguage(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getLanguage(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getLanguage(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getLanguage(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getLanguage() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'language'.
getLastMetaDataType() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
getLastNumberOfCui(String) - Static method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitioner
Gets the last number of cui.
getLastRevisionElement(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
getLastUpdateDate() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the last update date.
getLastUpdateDate(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the last update date.
getLastUpdateTime() - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the last update time.
getLastUpdateTime() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getLastUpdateTime() - Method in class org.lexevs.registry.model.Registry
Gets the last update time.
getLastUpdateTime() - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getLastUpdateTime() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getLastUpdateTime() - Method in interface org.lexevs.registry.service.Registry
Gets the last update time.
getLastUpdateTime() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the last update time.
getLastUpdateTime() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Returns the value of field 'lastUpdateTime'.
getLastUpdateTime() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getLastUpdateTime() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return the last time that the content of this service was changed; null if no changes have occurred.
getLastUsedDbIdentifer() - Method in class org.lexevs.registry.model.Registry
Gets the last used db identifer.
getLastUsedDbIdentifier() - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the last used db identifier.
getLastUsedDbIdentifier() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getLastUsedHistoryIdentifer() - Method in class org.lexevs.registry.model.Registry
Gets the last used history identifer.
getLastUsedHistoryIdentifier() - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the last used history identifier.
getLastUsedHistoryIdentifier() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getLat() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getLat() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getLatestBaseLine(String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getLatestBaseLine(String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getLatestBaseLine(String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the latest base line.
getLatestBaseLine(String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getLatestBaseline() - Method in interface org.LexGrid.LexBIG.History.HistoryService
Get the latest baseline in the list.
getLatestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getLatestBaseLine(String) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getLatestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getLatestBaseLine(String) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getLatestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getLatestRevision(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getLatestRevision(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
getLatestRevision(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getLatestRevision(String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
getLatestRevision(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
getLatestRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getLatestRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getLatestRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getLatestRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getLatestRevision(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getLatestRevision(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getLatestRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
getLatestRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
getLatestRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getLatestRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getLatestRevisionId(RevisableAbstractDatabaseService.ParentUidReferencingId, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
getLatestRevisionId(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
getLatestRevisionId(I, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Gets the latest revision id.
getLbGui() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getLbs() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
getLbs() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getLeafOnly() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'leafOnly'.
getLexBIGService() - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns a cached instance of a LexBIG service.
getLexBIGService() - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns a cached instance of a LexBIG service.
getLexBIGService() - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
getLexBIGService() - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
getLexBIGService() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return the associated LexBIGService instance; lazy initialized as required.
getLexBIGService() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
getLexBIGService() - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
Return the associated LexBIGService instance; lazy initialized as required.
getLexBIGService() - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return a persistent link to the LexBIG service
getLexBIGService() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
Return the associated LexBIGService instance; lazy initialized as required.
getLexBIGService() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
Return the associated LexBIGService instance; lazy initialized as required.
getLexBIGService() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getLexEVSBuildTimestamp() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getLexEVSBuildTimestamp() - Static method in class org.LexGrid.LexBIG.Impl.LexEVSVersion
 
getLexEVSBuildTimestamp() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the timestamp of when LexEVS was built.
getLexEVSBuildVersion() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getLexEVSBuildVersion() - Static method in class org.LexGrid.LexBIG.Impl.LexEVSVersion
 
getLexEVSBuildVersion() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the version of when LexEVS.
getLexEvsDatabaseOperations() - Method in class org.lexevs.locator.LexEvsServiceLocator
Gets the lex evs database operations.
getLexEvsDatabaseOperations() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Gets the lex evs database operations.
getLexEvsDatabaseOperations() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the lex evs database operations.
getLexEvsDatabaseOperations() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
getLexEvsDatabaseOperations() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
getLexEvsDatabaseSchemaSetup() - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
Gets the lex evs database schema setup.
getLexEvsDatabaseSchemaSetup() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getLexEVSIndexLocation() - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
getLexEVSIndexLocation() - Method in interface org.lexevs.dao.index.operation.LexEvsIndexOperations
 
getLexEvsIndexOperations() - Method in class org.lexevs.locator.LexEvsServiceLocator
 
getLexEvsServiceLocator() - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
getLexEvsTreeDao() - Method in class org.lexevs.tree.dao.DataSourceFactory
Deprecated.
Gets the lex evs tree dao.
getLexEvsTreeDao() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Gets the lex evs tree dao.
getLexEvsTreeDao() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the lex evs tree dao.
getLexEvsTreeDao() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.DataSourceFactory
Gets the lex evs tree dao.
getLexEvsTreeDao() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Gets the lex evs tree dao.
getLexEvsTreeDao() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the lex evs tree dao.
getLexEvsTreeNodesFromAssociatedConcepts(AssociatedConceptList, Map<String, LexEvsTreeNode>) - Method in class org.lexevs.tree.transform.AssociationListToTreeNodeList
Deprecated.
Gets the lex evs tree nodes from associated concepts.
getLexEvsTreeNodesFromAssociatedConcepts(AssociatedConceptList, Map<String, LexEvsTreeNode>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.transform.AssociationListToTreeNodeList
Gets the lex evs tree nodes from associated concepts.
getLexGridSchemaVersion(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the lex grid schema version.
getLexGridSchemaVersion(String) - Method in class org.lexevs.dao.database.access.DaoManager
 
getLexGridSchemaVersion() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
Gets the lex grid schema version.
getLexGridSchemaVersion() - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
 
getLexGridSchemaVersion() - Method in interface org.lexevs.dao.database.scheme.PersistenceScheme
Gets the lex grid schema version.
getLexGridSchemaVersion(String, String) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Gets the lex grid schema version.
getLink() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Gets the link.
getLink(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
 
getLink(T) - Method in interface org.lexgrid.loader.processor.support.PropertyLinkResolver
Gets the link.
getList() - Method in class org.lexgrid.loader.reader.ListReader
Gets the list.
getListenerRegistry() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the listener registry.
getListenerRegistry() - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Gets the listener registry.
getListFilter() - Method in class org.lexgrid.loader.processor.PreFilteringListProcessor
 
getListIdSetter() - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
 
getListIdSetter() - Method in class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
getListOfCodingSchemeVersionsUsedInResolution(CodingScheme) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
Return a list of AbsoluteCodingSchemeVersionReference that was used for resolving the resolvedValueSet
getListOfCodingSchemeVersionsUsedInResolution(CodingScheme) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Return a list of AbsoluteCodingSchemeVersionReferences used for resolving the resolvedValueSet
getListOfCodingSchemeVersionsUsedInResolution(CodingScheme) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getListOfCodingSchemeVersionsUsedInResolution(CodingScheme) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Return a list of AbsoluteCodingSchemeVersionReferences that were used for resolving the resolvedValueSet
getLlt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_costart_sym() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_currency() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_currency() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getLlt_harts_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_icd10_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_icd9_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_icd9cm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_jart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLlt_whoart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getLoadedCodingSchemeName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSToSQL
 
getLoadedCodingSchemes(ApplicationContext) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
getLoadedCodingSchemes() - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
getLoadedCodingSchemes(ApplicationContext) - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
getLoadedCodingSchemes(ApplicationContext) - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
getLoadedCodingSchemes(ApplicationContext) - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
getLoadedHeader(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
getLoader() - Method in interface org.LexGrid.LexBIG.Extensions.Index.Index
Returns an object used to administer and maintain the Index.
getLoader(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getLoader(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Return an instance of the named loader extension.
getLoaderClass() - Static method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Gets the loader class.
getLoaderName() - Static method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Gets the loader name.
getLoaderPreferences() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.ReadImpl
Returns the loader's current LoaderPreferences
getLoaderPreferences() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
Returns the loader's current LoaderPreferences
getLoaderPreferences() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Returns the current LoaderPreferences object.
getLoaderPreferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Returns the current LoaderPreferences object.
getLoaderPreferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getLoaderPreferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getLoaderPreferences() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getLoadExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getLoadExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getLoadExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to load information for access by a LexBIGService.
getLoadExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getLoadExtensions() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
getLoadExtensions() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Returns a description of all registered extensions used to load information for access by a LexBIGService.
getLoadSource() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Returns the value of field 'loadSource'.
getLoadValidationError() - Method in exception edu.mayo.informatics.lexgrid.convert.validator.exception.LoadValidationException
 
getLocalCodingScheme(String, String) - Static method in class org.lexevs.system.model.LocalCodingScheme
Gets the local coding scheme.
getLocalId() - Method in class org.LexGrid.naming.URIMap
Returns the value of field 'localId'.
getLocalName(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getLocalName.
getLocalName() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getLocalName.Returns the contents of the collection in an Array.
getLocalName() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Returns the value of field 'localName'.
getLocalName(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getLocalName.
getLocalName() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getLocalName.Returns the contents of the collection in an Array.
getLocalNameAsReference() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getLocalNameAsReference.Returns a reference to '_localNameList'.
getLocalNameAsReference() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getLocalNameAsReference.Returns a reference to '_localNameList'.
getLocalNameCount() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getLocalNameCount.
getLocalNameCount() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getLocalNameCount.
getLocalNames() - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Gets the local names.
getLocation() - Method in class org.lexevs.dao.indexer.lucene.Index
 
getLocator() - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
getLocator() - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
getLockCount() - Method in class org.lexevs.registry.WriteLockManager
Gets the lock count.
getLog(LogLevel) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
getLog(LogLevel) - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Returns log entries for the current or most recent export operation that match a particular status; null if no operation has been attempted.
getLog(LogLevel) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Returns log entries for the current or most recent load operation that match a particular status; null if no operation has been attempted.
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.StatusReportingCallback
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getLog(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getLog(LogLevel) - Method in interface org.LexGrid.LexBIG.Utility.logging.CachingMessageDirectorIF
Gets the LogEntries given a specified LogLevel.
getLog(LogLevel) - Method in interface org.LexGrid.LexBIG.Utility.logging.StatusReporter
 
getLogChange() - Method in class org.lexevs.system.constants.SystemVariables
 
getLogEntries(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
getLogEntries(LogLevel) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
getLogEntries() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getLogEntries() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getLogEntries() - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
 
getLogEntries() - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
getLogger() - Static method in class edu.mayo.informatics.resourcereader.core.impl.Resource
 
getLogger() - Method in class org.lexevs.cache.AbstractMethodCachingBean
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.connection.SQLInterface
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getLogger() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getLogger() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
getLogger() - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Gets the logger.
getLogger() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
getLogger() - Method in class org.lexevs.dao.index.connection.IndexInterface
Gets the logger.
getLogger() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getLogger() - Method in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
getLogger() - Method in class org.lexevs.logging.AbstractLoggingBean
Gets the logger.
getLogger() - Static method in class org.lexevs.logging.LoggerFactory
Returns a lightweight logger if lightweight is true, otherwise returns the SystemResourceService's logger.
getLogger() - Method in interface org.lexevs.logging.LoggingBean
 
getLogger() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the logger.
getLogger() - Static method in class org.lexevs.registry.WriteLockManager
Gets the logger.
getLogger() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the logger.
getLogger() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getLogger() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.IndexQueryParserFactory
 
getLogger() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.RestrictionImplementations
 
getLogger() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getLogger() - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getLogger() - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getLogger() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
The logger.
getLogger() - Method in class org.lexgrid.loader.logging.LoggingBean
 
getLogId() - Method in exception org.lexevs.exceptions.InternalException
Gets the log id.
getLogId() - Method in exception org.LexGrid.LexBIG.Exceptions.LBInvocationException
 
getLoginTimeout() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getLogLocation() - Method in class org.lexevs.system.constants.SystemVariables
 
getLogWriter() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getLucene() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getLuceneDirectoryCreator() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getLuceneDirectoryCreator() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
getLuceneDirectoryCreator() - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
getLuceneDirectoryCreator() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
getLuceneEntityDao() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
getLuceneEntityDao() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
 
getLuceneIndexTemplate(String, String) - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getLuceneIndexTemplate(String, String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getLuceneIndexTemplate() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getLuceneIndexTemplate(String, String) - Method in class org.lexevs.dao.index.lucene.v2009.entity.LuceneEntity2009Dao
 
getLuceneIndexTemplate(String, String) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
getLuceneIndexTemplate() - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
getLuceneIndexTemplate(String, String) - Method in class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
getLuceneIndexTemplate() - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
getLuceneIndexTemplate(String, String) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getLuceneIndexTemplate(List<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getLuceneIndexTemplate() - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
getLuceneIndexTemplate() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
getLuceneMaxClauseCount() - Method in class org.lexevs.system.constants.SystemVariables
 
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractContainsSearch
Gets the lucene search field.
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractExactMatchSearch
Gets the lucene search field.
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractStartsWithSearch
Gets the lucene search field.
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.ContainsSearch
 
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.ExactMatchSearch
 
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralContainsSearch
 
getLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.StartsWithSearch
 
getLui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getLui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getLui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getMajorVersion() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Gets the major version.
getManifest(URI) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
This method validates and returns the manifest object for the manifestURI_.
getManifestLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
getManifestLocation() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getManifestUtil() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getMapAndTermsForMappingAndReferences(String, String, String, Relations, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getMapAndTermsForMappingAndReferences(String, String, String, Relations, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getMapForwardNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMapForwardNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMapid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapping(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension
Gets the a mapping, which may be restricted and resolved.
getMapping(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
getMappingCodingSchemeFilter(String, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
Gets the concept reference list filter.
getMappingCodingSchemesEntityParticipatesIn(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension
Resolve a list of Mapping Coding Scheme References that the given Entity participates in as either a Source or Target.
getMappingCodingSchemesEntityParticipatesIn(String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
getMappingCodingSchemeUid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getMappingColumn() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the mapping column.
getMappings(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the mappings.
getMappings(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getMappings(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getMappings() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'mappings'.
getMappings() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'mappings'.
getMappings() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'mappings'.
getMappings() - Method in class org.LexGrid.valueSets.PickListDefinitions
Returns the value of field 'mappings'.
getMappings() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'mappings'.
getMappings() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Returns the value of field 'mappings'.
getMappingsFromScheme(String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getMappingSortOptionName() - Method in class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.MappingSortOption
Gets the mapping sort option name.
getMappingSortOptionName() - Method in class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.QualifierSortOption
 
getMappingTriples(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<String>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the mapping triples.
getMappingTriples(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getMappingTriplesCount(String, String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the mapping triples count.
getMappingTriplesCount(String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getMappingTriplesCountForCodes(String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getMappingTriplesCountForCodes(String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getMappingUri() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
Gets the mapping uri.
getMappingVersion() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
Gets the mapping version.
getMapRank() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getMapres() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapReverseNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMapReverseNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMaprule() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapsab() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapsetcui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapsid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapsubsetid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMapTables() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
getMaptype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getMasterGroupItemReader() - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
getMatchAlgorithm() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getMatchAlgorithm() - Method in class org.LexGrid.valueSets.PropertyMatchValue
Returns the value of field 'matchAlgorithm'.
getMatchAlgorithms() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getMatchAlgorithms() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the full description of all supported match algorithms.
getMatchAllDocs() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getMatchConceptCode() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchConceptCode'.
getMatchConceptStatus() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchConceptStatus'.
getMatchIfNoContext() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getMatchIfNoContext() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
getMatchIfNoContext() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'matchIfNoContext'.
getMatchIfNoContext(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getMatchIfNoContext(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getMatchIfNoContext(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getMatchIfNoContext(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the match if no context.
getMatchIfNoContext(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getMatchIfNoContext(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getMatchIfNoContext(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getMatchIfNoContext(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getMatchIfNoContext(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getMatchIfNoContext(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getMatchIfNoContext() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'matchIfNoContext'.
getMatchingCodingSchemeResources(SystemResourceService.CodingSchemeMatcher) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getMatchingCodingSchemeResources(SystemResourceService.CodingSchemeMatcher) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getMatchingCodingSchemeResources(SystemResourceService.CodingSchemeMatcher) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getMatchingCodingSchemeResources(SystemResourceService.CodingSchemeMatcher) - Method in interface org.lexevs.system.service.SystemResourceService
Gets the matching coding scheme resources.
getMatchNoopNamespaces() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchNoopNamespaces'.
getMatchPattern_conceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_conceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_conceptStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_conceptStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_inactiveStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_inactiveStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_noopNamespaces() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_noopNamespaces() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_rootName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_rootName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_xmlRepFormNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_xmlRepFormNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_xmlSourceNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_xmlSourceNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchPattern_xmlTextNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchPattern_xmlTextNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchRootName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getMatchRootName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getMatchRootName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchRootName'.
getMatchText() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getMatchXMLRepformNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchXMLRepformNames'.
getMatchXMLSourceNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchXMLSourceNames'.
getMatchXMLTextNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'matchXMLTextNames'.
getMax_value_set_cache() - Method in class org.lexevs.system.constants.SystemVariables
 
getMaxBufferSize() - Method in class org.lexgrid.loader.reader.SizeLimitedBufferedGroupItemReader
Gets the max buffer size.
getMaxBufferSize() - Method in class org.lexgrid.loader.writer.GenericListWriter
Gets the max buffer size.
getMaxBufferSize() - Method in class org.lexgrid.loader.writer.ListWriter
Gets the max buffer size.
getMaxConnectionsPerDB() - Method in class org.lexevs.system.constants.SystemVariables
 
getMaxDoc() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getMaxDoc() - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
getMaxDoc() - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
getMaxDoc() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getMaxEntitiesToReturn() - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
getMaxFieldSize() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getMaxLeafCacheSize() - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the maximum cache size for traversing graphs looking for leaf nodes
getMaxNamespaceLength() - Method in class org.lexgrid.loader.processor.support.validator.NamespaceSizeValidator
Gets the max namespace length.
getMaxResultSize() - Method in class org.lexevs.system.constants.SystemVariables
 
getMaxRows() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getMedDRA_version() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getMedDRAVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedDRA_Loader
 
getMedDRAVersion() - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
getMemberById(String) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
getMemberById(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
getMemberById(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
getMemberById(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
getMemberById(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
getMemberByName(String) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
getMemberByName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
getMemberByName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
getMemberByName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
getMemberByProperty(Object) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
getMemberByProperty(Object) - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
getMembersCount() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
getMembersCount() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
getMembersCount() - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
getMembersCount() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
getMembersCount() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
getMembersCount() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
getMessage() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'message'.
getMessage() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'message'.
getMessageDirector() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getMessageDirector() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getMessageNumber() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'messageNumber'.
getMessages_() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
getMetaData() - Method in class org.lexevs.dao.indexer.api.IndexerService
 
getMetaData() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getMetaData() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getMetadataAnalyzer() - Static method in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
getMetadataDao() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getMetadataDaos() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getMetadataFactory() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiIndexMetaDataFactoryTest
 
getMetaDataFileLocation() - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
getMetadataIndexCreator() - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
getMetaDataIndexName() - Static method in class org.lexevs.system.constants.SystemVariables
 
getMetadataIndexService() - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
getMetadataIndexService() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getMetaDataKeys() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
getMetadataProperty(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method getMetadataProperty.
getMetadataProperty() - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method getMetadataProperty.Returns the contents of the collection in an Array.
getMetadataPropertyCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method getMetadataPropertyCount.
getMetaDataValueUsingKey() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
getMetaDirectories() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getMetaLangName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getMetaMrconsoStagingDao() - Method in class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolver
 
getMetaName() - Static method in enum org.LexGrid.LexBIG.Extensions.Load.OntologyFormat
 
getMetaRootCuis() - Method in class org.lexgrid.loader.meta.staging.MetaJdbcMrconsoStagingDao
 
getMetaRootCuis() - Method in interface org.lexgrid.loader.meta.staging.processor.MetaMrconsoStagingDao
 
getMetaui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getMetaui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getMethod(T) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getMethod(MethodInvocation) - Method in class org.lexevs.cache.MethodCachingInterceptor
 
getMethod(ProceedingJoinPoint) - Method in class org.lexevs.cache.MethodCachingProxy
 
getMinimalResolvedValueSetSchemes() - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getMinimalResolvedValueSetSchemes() - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a minimal (i.e. no entities included) coding scheme object list
getMinimalResolvedVSCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getMinimalResolvedVSCodingSchemes() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return a list of minimal coding scheme objects of the resolved value set type, to be fully resolved by user later using resolveCodingScheme() method This method is temporarily using the dbName and dbURI columns in the registry Model changes for implementation will update the registry schema and model as necessary
getMinimalSourceAssertedValueSetSchemes() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getMinimalSourceAssertedValueSetSchemes() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a minimal (i.e. no entities included) coding scheme object list
getMinorVersion() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Gets the minor version.
getModelFormatVersion() - Method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
Gets the model format version.
getModifiedByProperty() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getModifier() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getModifiesAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getModifiesAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getModuleDescription(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method getModuleDescription.
getModuleDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method getModuleDescription.Returns the contents of the collection in an Array.
getModuleDescriptionCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method getModuleDescriptionCount.
getMonitorLoader() - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getMoreResults() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getMoreResults(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getMrconsoGroupEntityProcessor() - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.MrhierAssocAndPropQualProcessor
 
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
Gets the mrconso staging dao.
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
Gets the mrconso staging dao.
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrdefEntityCodeResolver
Gets the mrconso staging dao.
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
Gets the mrconso staging dao.
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
 
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.UmlsSourceEntityCodeAndCodingSchemeResolver
Gets the mrconso staging dao.
getMrconsoStagingDao() - Method in class org.lexgrid.loader.umls.processor.support.UmlsTargetEntityCodeAndCodingSchemeResolver
Gets the mrconso staging dao.
getMrdefItemProcessor() - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
getMrdocReader() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getMrrank(String, String) - Method in class org.lexgrid.loader.rrf.data.property.PropertyQualifierMrrankUtility
 
getMrrankList() - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrrankUtility
Gets the mrrank list.
getMrrankUtility() - Method in class org.lexgrid.loader.rrf.data.property.MrconsoPropertyComparator
Gets the mrrank utility.
getMrRankUtility() - Method in class org.lexgrid.loader.rrf.processor.support.MrrankPropertyQualifierResolver
 
getMrrankUtility() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Gets the mrrank utility.
getMrsabList() - Method in class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
Gets the mrsab list.
getMrsabRowFromRsab(String) - Method in class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
 
getMrsabRowFromRsab(String) - Method in interface org.lexgrid.loader.rrf.data.codingscheme.MrsabUtility
Gets the mrsab row from rsab.
getMrsabUtility() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Gets the mrsab utility.
getMrsabUtility() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
Gets the mrsab utility.
getMrsabUtility() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
Gets the mrsab utility.
getMrsatItemProcessor() - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
getMrsatMap() - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
Gets the mrsat map.
getMrsatUtility() - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
Gets the mrsat utility.
getMrsatUtility() - Method in class org.lexgrid.loader.umls.reader.support.MrsatSkipPolicy
Gets the mrsat utility.
getMrstyItemProcessor() - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
getMultiDirectoryFactory() - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
getMustHaveCodes() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getMustHaveEntityTypes() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getMustHaveEntityTypes() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getMustHaveNamespaces() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getMustHaveSourceCodes() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getMustHaveSourceNamespaces() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getMustHaveTargetCodes() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getMustHaveTargetNamespaces() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getMyClassLoader() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
getMyClassLoader() - Method in class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
Gets the my class loader.
getMysql_collation() - Method in class org.lexevs.system.constants.SystemVariables
 
getMysqlName() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getName() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getName() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getName() - Method in class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
getName() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Gets the name.
getName() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
getName() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the name.
getName() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Returns the value of field 'name'.
getName() - Method in class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
Returns the value of field 'name'.
getName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Returns the value of field 'name'.
getName() - Method in interface org.LexGrid.LexBIG.Extensions.Extendable
Return the name assigned to this service extension.
getName() - Static method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
getName() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
getName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getName() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getName() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
getName() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
getName() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getName() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getName(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method getName.
getName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method getName.Returns the contents of the collection in an Array.
getName(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method getName.
getName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method getName.Returns the contents of the collection in an Array.
getName(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method getName.
getName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method getName.Returns the contents of the collection in an Array.
getName(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method getName.
getName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method getName.Returns the contents of the collection in an Array.
getName(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method getName.
getName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method getName.Returns the contents of the collection in an Array.
getName() - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
getName() - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
getName() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
getName() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getName() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getNameAndValue(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method getNameAndValue.
getNameAndValue() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method getNameAndValue.Returns the contents of the collection in an Array.
getNameAndValueCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method getNameAndValueCount.
getNameCount() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method getNameCount.
getNameCount() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method getNameCount.
getNameCount() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method getNameCount.
getNameCount() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method getNameCount.
getNameCount() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method getNameCount.
getNamedDirectories(ConcurrentMetaData) - Static method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getNamedDirectories() - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
getNamedDirectory() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
getNamedDirectory(String) - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
getNameForConstant(int) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getNameForType(int) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
getNameInNamespace() - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getNameParser(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getNameParser(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getNameSpace(OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
getNameSpace(IRI) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
getNameSpace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
getNamespace() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getNamespace() - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
getNamespace() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
Gets the namespace.
getNamespace() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the namespace.
getNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the namespace.
getNamespace() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getNamespace() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getNamespace() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Gets the namespace.
getNameSpaceForCodingScheme(CodingScheme) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getNameSpaceFromAui - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
getNamespaceHandler() - Static method in class org.LexGrid.LexBIG.Impl.namespace.NamespaceHandlerFactory
 
getNameSpacePrefix() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getNameSpacePrefix.
getNameSpacePrefix() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getNameSpacePrefix.
getNameSpaceSet() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
getNamespacesForCodingScheme(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandler
 
getNamespacesForCodingScheme(String, String, String) - Method in interface org.LexGrid.LexBIG.Impl.namespace.NamespaceHandler
 
getNameSpaceURI() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getNameSpaceURI.
getNameSpaceURI() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getNameSpaceURI.
getNameVersionKey() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getNanoTimeLongKey() - Static method in class org.lexevs.dao.database.key.NanoTimeLongKeyGenerator
 
getNativeRelation(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Get the native relation for a coding scheme.
getNativeRelations(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Gets the native relations.
getNativeRelations(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
getNciHistoryDao(String) - Method in class org.lexevs.dao.database.access.DaoManager
 
getNciHistoryDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getNciHistoryService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the nci history service.
getNciHistoryXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getNCItSourceHistoryService() - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
getNetworkTimeout() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getNewIsActive(Entity) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Gets the new isActive value.
getNewLBS() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
getNewLBS() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getNewRevisionId() - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
 
getNewRevisionId() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getNext() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Returns items skipped by last scroll() without altering cursor position.
getNext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
getNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
getNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
getNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
getNext() - Method in interface org.LexGrid.LexBIG.Utility.Iterators.ResolvedConceptReferencesIterator
Return a list containing the items specified in the last scroll call.
getNext() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
getNextCodingSchemePrefix() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
getNextCodingSchemePrefix() - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Gets the next coding scheme prefix.
getNextDatabasePrefixGenerator() - Method in class org.lexevs.registry.service.DatabaseRegistry
Gets the next database prefix generator.
getNextDBIdentifier() - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getNextDBIdentifier() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getNextDBIdentifier() - Method in interface org.lexevs.registry.service.Registry
Gets the next db identifier.
getNextDBIdentifier() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the next db identifier.
getNextHistoryIdentifier() - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getNextHistoryIdentifier() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getNextHistoryIdentifier() - Method in interface org.lexevs.registry.service.Registry
Gets the next history identifier.
getNextHistoryIdentifier() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the next history identifier.
getNoCodeHandler() - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityCodeResolver
Gets the no code handler.
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.dao.GraphLexEvsTreeDao
Deprecated.
 
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
 
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.lexevs.tree.dao.LexEvsTreeDao
Deprecated.
Gets the node.
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.GraphLexEvsTreeDao
 
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
 
getNode(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao
Gets the node.
getNode(String, String, String, String[], String, boolean, boolean, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Locates and returns a graph node based on the given information; a new node is added to the graph if necessary.
getNodeAddedListener() - Method in class org.lexevs.tree.listener.NodeAddedListenerSupport
Deprecated.
Gets the node added listener.
getNodeAddedListener() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListenerSupport
Gets the node added listener.
getNodeCount() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns the total number of nodes tracked by the graph.
getNodeGraph(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getNodeGraph(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the node graph as represented in the particular relationship set in the coding scheme.
getNodeList() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
getNodeName(String, String, boolean, String) - Static method in class org.LexGrid.LexBIG.gui.displayResults.Graph
Utility method to return the graph based node name for the given concept reference.
getNodes() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
getNodeSet(String, CodingSchemeVersionOrTag, LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getNodeSet(String, CodingSchemeVersionOrTag, LocalNameList) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns the set of all entities in the specified coding scheme scheme of the given types.
getNodeSetForCodingScheme(ValueSetDefinition, String, HashMap<String, String>, String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the coded node set that represents all of the concept codes in the referenced coding scheme
getNodeSetForEntityReference(ValueSetDefinition, EntityReference, HashMap<String, String>, String) - Method in class org.lexgrid.valuesets.helper.DefaultCompiler
Return a coded node set that represents the supplied entity reference
getNodeSetForPropertyReference(ValueSetDefinition, PropertyReference, HashMap<String, String>, String) - Method in class org.lexgrid.valuesets.helper.DefaultCompiler
Return a coded node set that represents the supplied property reference
getNodesPath(String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getNodesPath(String, String, String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getNodesPath(String, CodingSchemeVersionOrTag, String, String, String, String, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return the path/transitive closure path between two nodes.
getNodesPath(String, CodingSchemeVersionOrTag, String, String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
GetNodesPathBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
GetNodesPathBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Instantiates a new insert transitive closure bean.
GetNodeSqlBuilder - Class in org.lexevs.tree.dao.sqlbuilder
Deprecated.
GetNodeSqlBuilder() - Constructor for class org.lexevs.tree.dao.sqlbuilder.GetNodeSqlBuilder
Deprecated.
 
GetNodeSqlBuilder - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder
The Class GetNodeSqlBuilder.
GetNodeSqlBuilder() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetNodeSqlBuilder
 
getNonBatchTemplateInserter() - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Gets the non batch template inserter.
getNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
getNonCodingSchemeEntry(String) - Method in interface org.lexevs.registry.service.Registry
Gets the non coding scheme entry.
getNonCodingSchemeEntry(String) - Method in class org.lexevs.registry.service.XmlRegistry
 
getNonCodingSchemeResourceTypes() - Method in class org.lexevs.registry.service.DatabaseRegistry
 
getNonEntityConceptReferenceList() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getNonPreferredPresentation(Entity) - Static method in class org.LexGrid.custom.concepts.EntitiesUtil
Returns the synonym presentation object for a entity
getNormConfigFile() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getNormConfigFile() - Method in class org.lexevs.system.constants.SystemVariables
 
getNull_field() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getNull_field() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getNull_field1() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
getNull_field2() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
getNull_field3() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
getNumberOfCodes() - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Gets the number of codes.
getNumberOfCodes() - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
getNumConceptsLoaded() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Returns the value of field 'numConceptsLoaded'.
getNumRelationsLoaded() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Returns the value of field 'numRelationsLoaded'.
getObject() - Method in class org.lexevs.cache.CacheConfigLocationFactory
 
getObject() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
 
getObject() - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
getObject() - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
getObject() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
 
getObject() - Method in class org.lexevs.dao.database.prefix.PrefixFactory
 
getObject() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
 
getObject() - Method in class org.lexevs.dao.database.scheme.CurrentPersistenceSchemeVersionFactory
 
getObject() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
getObject() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
getObject() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getObject() - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
 
getObject() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
 
getObject() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
getObject() - Method in class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
getObject() - Method in class org.lexevs.dao.index.factory.IndexerServiceFactory
 
getObject() - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
getObject() - Method in class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
getObject() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
getObject() - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiIndexMetaDataFactory
 
getObject() - Method in class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
getObject() - Method in class org.lexevs.system.constants.IndividualVariableFactory
 
getObject() - Method in class org.lexevs.system.constants.SystemVariablesFactory
 
getObject() - Method in class org.lexgrid.loader.logging.LgMessageDirectorIFFactory
 
getObject(Object, String) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Gets the object.
getObject() - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
 
getObject() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
 
getObject() - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
getObject() - Method in class org.lexgrid.loader.rrf.factory.MrsatUsageFactory
 
getObject() - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
 
getObjectColumn() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the object column.
getObjectType() - Method in class org.lexevs.cache.CacheConfigLocationFactory
 
getObjectType() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
 
getObjectType() - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
getObjectType() - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
getObjectType() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
 
getObjectType() - Method in class org.lexevs.dao.database.prefix.PrefixFactory
 
getObjectType() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
 
getObjectType() - Method in class org.lexevs.dao.database.scheme.CurrentPersistenceSchemeVersionFactory
 
getObjectType() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
getObjectType() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
getObjectType() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getObjectType() - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
 
getObjectType() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
 
getObjectType() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
getObjectType() - Method in class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
getObjectType() - Method in class org.lexevs.dao.index.factory.IndexerServiceFactory
 
getObjectType() - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
getObjectType() - Method in class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
getObjectType() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
getObjectType() - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiIndexMetaDataFactory
 
getObjectType() - Method in class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
getObjectType() - Method in class org.lexevs.system.constants.IndividualVariableFactory
 
getObjectType() - Method in class org.lexevs.system.constants.SystemVariablesFactory
 
getObjectType() - Method in class org.lexgrid.loader.logging.LgMessageDirectorIFFactory
 
getObjectType() - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
 
getObjectType() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
 
getObjectType() - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
getObjectType() - Method in class org.lexgrid.loader.rrf.factory.MrsatUsageFactory
 
getObjectType() - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
 
getOBOAbbreviationByURL(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
getOBOAbbreviations() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
getOBOCodingScheme(OBOResourceReader, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
getOBOInstances() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
getOBORelations() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
getOBOTerms() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
getOBOVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Export.OBO_Exporter
Return the OBO text file version that is supported by the loader.
getOBOVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Load.OBO_Loader
 
getOBOVersion() - Method in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
getOBOVersion() - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
getOntology() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
getOntology_node_child_count() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
getOntology_node_id() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
getOntology_node_name() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
getOntology_node_ns() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
getOntologyFormat() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Return the ontology format the loader can handle
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiResolvedValueSetLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getOntologyFormat() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getOntologyFormat() - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
getOntologyFormat() - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
getOntologyFormat() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
getOntologyShortFormProvider() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
getOntologyVersion() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getOperator() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'operator'.
getOptionalQualifierResolver() - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
getOptionDescription() - Method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
getOptionName() - Method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
getOptionName() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
getOptionName() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.BaseOption
Gets the option name.
getOptions() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
Get the additional options that must be supplied before the reading can happen.
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridLDAP
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
getOptions() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.OutputFormatInterface
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridLDAPOut
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
getOptions() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
getOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
 
getOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getOptions() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getOptionsForCombination(InputFormatInterface, OutputFormatInterface) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.CombinationOptions
 
getOptionValue() - Method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
getOptionValue() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
getOptionValue() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.BaseOption
Gets the option value.
getOracleName() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getOrder() - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Sort
Gets the order.
getOrderedGroups() - Method in class org.lexevs.dao.database.ibatis.batch.BatchOrderClassifier
 
getOriginal() - Method in class org.lexevs.dao.database.service.event.revision.ReviseEvent
Gets the original.
getOriginalCodingScheme() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Gets the original coding scheme.
getOriginalEntity() - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Gets the original entity.
getOverrideSingleDbMode() - Method in class org.lexevs.system.constants.SystemVariables
 
getOwner() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'owner'.
getPagedConceptReferenceByCursorAndCode(String, int, int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetEntityResolver
 
getPagedSourceAssertedValueSetEntities(String, int, int) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getPagedSourceAssertedValueSetEntities(String, int, int) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getPagedValueSetEntities(String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Paging capable method for value set members defined by a unique identifier passed in as the string mathchCode parameter.
getPagedValueSetEntities(String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getPageSize() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Gets the page size.
getPageSize() - Method in class org.lexevs.paging.AbstractPageableIterator
Gets the page size.
getPageSize() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Gets the page size.
getPageSize() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the page size.
getPageSize() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Gets the page size.
getPageSize() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the page size.
getPageSize() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Gets the page size.
getParam1() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameter
Gets the param1.
getParam2() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollection
 
getParam2() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTuple
Gets the param2.
getParam3() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTuple
 
getParam3() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTriple
Gets the param3.
getParam4() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTriple
 
getParam4() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuad
Gets the param4.
getParam5() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuint
 
getParam6() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterSextet
 
getParameterizedlistIdSetter() - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
getParameterMetaData() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getParameterName() - Method in exception org.LexGrid.LexBIG.Exceptions.LBParameterException
 
getParameterValue() - Method in exception org.LexGrid.LexBIG.Exceptions.LBParameterException
 
getParams() - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getParent(Concept[], int) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.TextUtility
 
getParent() - Method in class org.mayo.edu.lgModel.LexGridBase
 
getParentId() - Method in class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Gets the parent id.
getParentId() - Method in class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Gets the parent id.
getParentId() - Method in class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Gets the parent id.
getParentId() - Method in class org.lexgrid.loader.wrappers.ParentIdHolder
 
getParentlessNodes(SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns all nodes maintained by the graph that are source but not target of any relationship.
getParentLogger() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getParentOfSupplement(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SupplementExtension
Gets the parent of a supplement.
getParentOfSupplement(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement.SupplementExtensionImpl
 
getParentOfSupplement(String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the parent of a supplement.
getParentOfSupplement(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the parent of a supplement.
getParentType() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Gets the reference type.
getParentUId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Gets the entity id.
getParentUid() - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.ParentUidReferencingId
Gets the parent uid.
getPartitionNumberForInputRow(I) - Method in interface org.lexgrid.loader.rrf.partition.DataPartitioner
Gets the partition number for input row.
getPartitionNumberForInputRow(Mrrel) - Method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitioner
 
getPassword() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getPassword() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getPath() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getPath() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the path
getPath() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the transitive path from source to target
getPath() - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
getPathsFromRoot(LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, String, Map<String, EntityDescription>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Resolves one or more paths from the hierarchy root to the given code through a list of connected associations defined by the hierarchy.
getPathToRoot(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.dao.pathtoroot.LexEvsPathToRootResolver
Deprecated.
 
getPathToRoot(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.lexevs.tree.dao.pathtoroot.PathToRootResolver
Deprecated.
Gets the path to root.
getPathToRoot(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot.LexEvsPathToRootResolver
 
getPathToRoot(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot.PathToRootResolver
Gets the path to root.
getPathToRootAuis(String) - Method in class org.lexgrid.loader.rrf.processor.AbstractMrhierProcessor
 
getPathToRootChildren() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the path to root children.
getPathToRootChildren() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the path to root children.
getPathToRootParents() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Gets the path to root parents.
getPathToRootParents() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Gets the path to root parents.
getPathToRootResolver() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the path to root resolver.
getPathToRootResolver() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the path to root resolver.
getPathToRootResovleOption() - Method in class org.LexGrid.LexBIG.DataModel.enums.HierarchyPathResolveOption
Returns the value of field 'pathToRootResovleOption'.
getPaui() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getPersistenceScheme() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getPersistenceSchemes() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
Gets the persistence schemes.
getPickContext(int) - Method in class org.LexGrid.valueSets.PickListEntry
Method getPickContext.
getPickContext() - Method in class org.LexGrid.valueSets.PickListEntry
Method getPickContext.Returns the contents of the collection in an Array.
getPickContextAsReference() - Method in class org.LexGrid.valueSets.PickListEntry
Method getPickContextAsReference.Returns a reference to '_pickContextList'.
getPickContextCount() - Method in class org.LexGrid.valueSets.PickListEntry
Method getPickContextCount.
getPickList() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
 
getPickList() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
 
getPickList() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.MultiValueOption
 
getPickList() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.Option
 
getPickListDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the pick list definition daos.
getPickListDefinition() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
Gets the pick list definition.
getPickListDefinition(int) - Method in class org.LexGrid.valueSets.PickListDefinitions
Method getPickListDefinition.
getPickListDefinition() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method getPickListDefinition.Returns the contents of the collection in an Array.
getPickListDefinitionAsReference() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method getPickListDefinitionAsReference.Returns a reference to '_pickListDefinitionList'.
getPickListDefinitionById(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Gets the pick list definition by id.
getPickListDefinitionById(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListDefinitionById(String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getPickListDefinitionById(String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Returns pickList definition for supplied pickListId.
getPickListDefinitionByPickListId(String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Gets the pick list definition by pick list id.
getPickListDefinitionByPickListId(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
getPickListDefinitionCount() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method getPickListDefinitionCount.
getPickListDefinitionIdForEntityReference(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
getPickListDefinitionIdForEntityReference(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListDefinitionIdForEntityReference(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Gets the pick list definition id for entity reference.
getPickListDefinitionIdForEntityReference(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
getPickListDefinitionIdForSupportedTagAndValue(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Returns all the pickListIds that contain supplied supported tag and value.
getPickListDefinitionIdForSupportedTagAndValue(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListDefinitionIdForSupportedTagAndValue(String, String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Returns list of pick list definition IDs that contains supplied Supported Attribute Tag and Value.
getPickListDefinitionIdForSupportedTagAndValue(String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
getPickListDefinitionIdForValueSetDefinitionURI(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Gets the list of pick list definitions that are derived by supplied value set definition URI.
getPickListDefinitionIdForValueSetDefinitionURI(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListDefinitionIdForValueSetDefinitionUri(String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Gets the pick list definition id's by value set definition uri.
getPickListDefinitionIdForValueSetDefinitionUri(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
getPickListDefinitionIdForValueSetDefinitionUri(URI) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getPickListDefinitionIdForValueSetDefinitionUri(URI) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Returns all the pickList definition id's that represents supplied value set definition URI.
getPickListDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
getPickListDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
getPickListDefinitions() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'pickListDefinitions'.
getPickListDefinitionService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the pick list definition service.
getPickListDefinitionService() - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Gets the pick list definition service.
getPickListDefinitionService() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getPickListEntry() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getPickListEntryExclusion() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getPickListEntryId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getPickListEntryId() - Method in class org.LexGrid.valueSets.PickListEntryNode
Returns the value of field 'pickListEntryId'.
getPickListEntryNode() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getPickListEntryNode(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method getPickListEntryNode.
getPickListEntryNode() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getPickListEntryNode.Returns the contents of the collection in an Array.
getPickListEntryNodeAsReference() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getPickListEntryNodeAsReference.Returns a reference to '_pickListEntryNodeList'.
getPickListEntryNodeChoice() - Method in class org.LexGrid.valueSets.PickListEntryNode
Returns the value of field 'pickListEntryNodeChoice'.
getPickListEntryNodeCount() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getPickListEntryNodeCount.
getPickListEntryNodeDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListEntryNodeDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getPickListEntryNodeGuidByPickListIdAndPLEntryId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Returns the plEntryGUID for pickListId and pickListEntryId.
getPickListEntryNodeGuidByPickListIdAndPLEntryId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListEntryNodeService() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
Gets the pick list entry node service.
getPickListEntryNodeUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
getPickListEntryNodeUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getPickListEntryStateUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
getPickListEntryStateUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
getPickListEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getPickListGuidFromPickListId(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Gets the guid from pick list id.
getPickListGuidFromPickListId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListId() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getPickListId() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'pickListId'.
getPickListIds() - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Gets the pick list ids.
getPickListIds() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getPickListIdsForSupportedTagAndValue(String, String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getPickListIdsForSupportedTagAndValue(String, String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Returns all the pickListIds that contain supplied supported tag and value.
getPickListUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getPickListValueSetDefinition(String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getPickListValueSetDefinition(String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Returns an URI of the represented value set definition of the pickList.
getPickText() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getPickText() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
getPickText() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'pickText'.
getPLEntryByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getPopulatorSteps() - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
Gets the populator steps.
getPort() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getPostgreSqlName() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
getPostProcessor(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getPredicateGuidForValueSetRelation(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
getPredicateUid() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getPredUid(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getPreferencesURI() - Method in interface edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces.PreferenceLoader
Gets the URI of the loaded Preferences XML file.
getPreferencesURI() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
getPreferredOption() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
getPreferredSetter() - Method in class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
getPreferrredPresentation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getPrefix() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getPrefix() - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
Gets the prefix.
getPrefix() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
Gets the prefix.
getPrefix() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
Gets the prefix.
getPrefix() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the prefix.
getPrefix() - Method in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
Gets the prefix.
getPrefix(String, CodingSchemeVersionOrTag) - Method in class org.lexevs.tree.dao.prefixresolver.DefaultLexEvsPrefixResolver
Deprecated.
 
getPrefix(String, CodingSchemeVersionOrTag) - Method in interface org.lexevs.tree.dao.prefixresolver.PrefixResolver
Deprecated.
Gets the prefix.
getPrefix(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver.DefaultLexEvsPrefixResolver
 
getPrefix(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver.PrefixResolver
Gets the prefix.
getPrefix() - Method in class org.lexgrid.loader.data.property.ParameterizedSequentialIdSetter
Gets the prefix.
getPrefix() - Method in class org.lexgrid.loader.data.property.PrefixedSequentialIdSetter
Gets the prefix.
getPrefix() - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
getPrefix() - Method in class org.lexgrid.loader.listener.CleanupListener
 
getPrefix() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Gets the prefix.
getPrefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
getPrefix() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
getPrefix() - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
 
getPrefixKey() - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
getPrefixLengthLimit() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Gets the prefix length limit.
getPrefixNameShortFormProvider() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
getPrefixResolver() - Method in class org.lexevs.dao.database.access.AbstractBaseDao
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getPrefixResolver() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.dao.database.prefix.PrefixFactory
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the prefix resolver.
getPrefixResolver() - Method in class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
Gets the prefix resolver.
getPrefixResolver() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
Gets the prefix resolver.
getPresentation() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
 
getPresentation(int) - Method in class org.LexGrid.concepts.Entity
Method getPresentation.
getPresentation() - Method in class org.LexGrid.concepts.Entity
Method getPresentation.Returns the contents of the collection in an Array.
getPresentationAsReference() - Method in class org.LexGrid.concepts.Entity
Method getPresentationAsReference.Returns a reference to '_presentationList'.
getPresentationContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getPresentationCount() - Method in class org.LexGrid.concepts.Entity
Method getPresentationCount.
getPresentationExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getPresentationFormat() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getPresentationFromAUI(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Gets the Presentation ID (for example, T1) given a specific AUI, Code, and Coding Scheme Name first level nodes in hierarchical associations.
getPresentationPropertyByParent() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Gets the presentation property by parent.
getPresentationRank_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getPresentationResolver() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getPresentations() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getPresentations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getPreviousEntryStateUId() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Gets the previous entry state id.
getPreviousRevisionIdFromGivenRevisionIdForEntry(String, String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
getPreviousRevisionIdFromGivenRevisionIdForEntry(String, String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
getPreviousTag() - Method in class org.lexevs.registry.event.events.TagUpdateEvent
Gets the previous tag.
getPrevRevision() - Method in class org.LexGrid.versions.EntryState
Returns the value of field 'prevRevision'.
getPrevRevisionUId() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
 
getPrimary_soc_fg() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getPrimaryKeyIncrementer() - Method in class org.lexevs.dao.database.access.AbstractBaseDao
 
getPrimaryKeyIncrementer() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getPrimaryKeyIncrementer() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
getPrimaryKeyIncrementer() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
 
getPrimaryKeyIncrementers() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Gets the primary key incrementers.
getPrimaryKeyStrategy() - Method in class org.lexevs.system.constants.SystemVariables
 
getPrimarySystemResourceService() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
Gets the primary system resource service.
getPrintName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getPrioritized_comment_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getPrioritized_comment_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getPrioritized_definition_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getPrioritized_definition_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getPrioritized_presentation_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getPrioritized_presentation_names() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getPrioritizedCommentNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'prioritizedCommentNames'.
getPrioritizedDefinitionNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'prioritizedDefinitionNames'.
getPrioritizedPresentationNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'prioritizedPresentationNames'.
getProcessComplexProps() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'processComplexProps'.
getProcessor() - Method in class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
Gets the processor.
getProcessor() - Method in class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
Gets the processor.
getProcessor() - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
Gets the processor.
getProcessorList() - Method in class org.lexgrid.loader.processor.ClassifierCompositeProcessor
Gets the processor list.
getProcessors() - Method in class org.lexgrid.loader.processor.CombiningListProcessor
 
getProcessors() - Method in class org.lexgrid.loader.processor.CombiningProcessor
 
getProcessStatus() - Method in class org.lexgrid.loader.logging.SpringBatchMessageDirector
 
getProcessStatus() - Method in interface org.lexgrid.loader.logging.StatusTrackingLogger
 
getProcessUID() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'processUID'.
getProduct() - Method in class org.LexGrid.LexBIG.gui.VersionProperties
 
getProductionVersionForCodingSchemeURI(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
getProductionVersionFromTargetScheme(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getProductName() - Method in enum org.lexevs.dao.database.type.DatabaseType
Gets the product name.
getProgramName() - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Returns the value of field 'programName'.
getPromptForSchemeHelp() - Static method in class org.LexGrid.LexBIG.admin.Util
Returns common text to append to displayed help for commands that allow the user to prompt for coding scheme information instead of providing urn and version information as parameters.
getPromptForSchemeHelp() - Static method in class org.lexgrid.valuesets.admin.Util
Returns common text to append to displayed help for commands that allow the user to prompt for coding scheme information instead of providing urn and version information as parameters.
getPromptForSchemeHelp() - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Returns common text to append to displayed help for commands that allow the user to prompt for coding scheme information instead of providing urn and version information as parameters.
getPropertId() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Gets the propert id.
getProperties() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseEntityRecord
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getProperties() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'properties'.
getProperties(String) - Method in class org.lexgrid.loader.properties.impl.PropertiesFactory
Gets the properties.
getProperties() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'properties'.
getProperties() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'properties'.
getProperties() - Method in class org.LexGrid.valueSets.PickListEntryNode
Returns the value of field 'properties'.
getProperties() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'properties'.
getPropertiesForExistingLoad(String, String) - Method in interface org.lexgrid.loader.properties.ConnectionPropertiesFactory
Gets the properties for existing load.
getPropertiesForExistingLoad(String, String) - Method in class org.lexgrid.loader.properties.impl.DefaultLexEVSPropertiesFactory
 
getPropertiesForNewLoad() - Method in interface org.lexgrid.loader.properties.ConnectionPropertiesFactory
Gets the properties for new load.
getPropertiesForNewLoad() - Method in class org.lexgrid.loader.properties.impl.DefaultLexEVSPropertiesFactory
 
getPropertiesForPropertyName(List<Property>, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
getPropertiesForPropertyName(List<Property>, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getPropertiesOfParents(String, List<String>) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getPropertiesOfParents(String, List<String>, List<String>, List<String>) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getPropertiesOfParents(String, List<String>, List<String>, List<String>) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertiesOfParents(String, List<String>) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertiesOfParents() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Gets the property by parent.
getPropertiesOfParentsRestrictByName() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsRestrictByNameAndType() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsRestrictByNameAndTypeWrongMismatched() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsRestrictByNameAndTypeWrongName() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsRestrictByNameAndTypeWrongType() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsRestrictByType() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsTwoProperties() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsWithTwoDifferentEntities() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertiesOfParentsZeroProperties() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getProperty() - Method in class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Gets the property.
getProperty() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Gets the property.
getProperty() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.VSPropertyBean
 
getProperty(int) - Method in class org.LexGrid.commonTypes.Properties
Method getProperty.
getProperty() - Method in class org.LexGrid.commonTypes.Properties
Method getProperty.Returns the contents of the collection in an Array.
getProperty(int) - Method in class org.LexGrid.concepts.Entity
Method getProperty.
getProperty() - Method in class org.LexGrid.concepts.Entity
Method getProperty.Returns the contents of the collection in an Array.
getPropertyAsReference() - Method in class org.LexGrid.commonTypes.Properties
Method getPropertyAsReference.Returns a reference to '_propertyList'.
getPropertyAsReference() - Method in class org.LexGrid.concepts.Entity
Method getPropertyAsReference.Returns a reference to '_propertyList'.
getPropertyById(Entity, String) - Method in class org.LexGrid.LexBIG.gui.edit.EntityEditDialog
 
getPropertyByParent() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Gets the property by parent.
getPropertyByParentWithEverything() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
getPropertyByUid(String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getPropertyByUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
getPropertyByUid(String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertyByUId(String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertyByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getPropertyComparator() - Method in class org.lexgrid.loader.processor.SortingListProcessor
Gets the property comparator.
getPropertyContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getPropertyCount() - Method in class org.LexGrid.commonTypes.Properties
Method getPropertyCount.
getPropertyCount() - Method in class org.LexGrid.concepts.Entity
Method getPropertyCount.
getPropertyDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the property dao.
getPropertyDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getPropertyDao() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getPropertyDao() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Gets the property dao.
getPropertyDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the property daos.
getPropertyDefList(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getPropertyExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
getPropertyGuidFromParentGuidAndPropertyId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
getPropertyGuidFromParentGuidAndPropertyId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Gets the propertyGuid from parentGuid and prop id.
getPropertyId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getPropertyId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getPropertyId() - Method in class org.LexGrid.commonTypes.Property
Returns the value of field 'propertyId'.
getPropertyId(T) - Method in interface org.lexgrid.loader.processor.support.PropertyIdResolver
 
getPropertyId(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver
 
getPropertyId() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
getPropertyId() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'propertyId'.
getPropertyLink(int) - Method in class org.LexGrid.concepts.Entity
Method getPropertyLink.
getPropertyLink() - Method in class org.LexGrid.concepts.Entity
Method getPropertyLink.Returns the contents of the collection in an Array.
getPropertyLink() - Method in class org.LexGrid.concepts.PropertyLink
Returns the value of field 'propertyLink'.
getPropertyLinkAsReference() - Method in class org.LexGrid.concepts.Entity
Method getPropertyLinkAsReference.Returns a reference to '_propertyLinkList'.
getPropertyLinkCount() - Method in class org.LexGrid.concepts.Entity
Method getPropertyLinkCount.
getPropertyList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
getPropertyMatchValue() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getPropertyMatchValue() - Method in class org.LexGrid.valueSets.PropertyReference
Returns the value of field 'propertyMatchValue'.
getPropertyMultiAttribList() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
getPropertyName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptProperty
 
getPropertyName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getPropertyName() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getPropertyName() - Method in class org.LexGrid.commonTypes.Property
Returns the value of field 'propertyName'.
getPropertyName(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getPropertyName(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getPropertyName(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getPropertyName(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the property name.
getPropertyName(Mrsat) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
 
getPropertyName(Mrsat) - Method in interface org.lexgrid.loader.rrf.data.property.MrsatUtility
Gets the property name.
getPropertyName(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getPropertyName(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getPropertyName(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getPropertyName(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getPropertyName(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getPropertyName(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getPropertyName() - Method in class org.LexGrid.valueSets.PropertyReference
Returns the value of field 'propertyName'.
getPropertyName_primitive() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getPropertyName_primitive() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getPropertyName_type() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getPropertyName_type() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
getPropertyQualifier(int) - Method in class org.LexGrid.commonTypes.Property
Method getPropertyQualifier.
getPropertyQualifier() - Method in class org.LexGrid.commonTypes.Property
Method getPropertyQualifier.Returns the contents of the collection in an Array.
getPropertyQualifierAsReference() - Method in class org.LexGrid.commonTypes.Property
Method getPropertyQualifierAsReference.Returns a reference to '_propertyQualifierList'.
getPropertyQualifierCount() - Method in class org.LexGrid.commonTypes.Property
Method getPropertyQualifierCount.
getPropertyQualifierName() - Method in class org.LexGrid.commonTypes.PropertyQualifier
Returns the value of field 'propertyQualifierName'.
getPropertyQualifierType() - Method in class org.LexGrid.commonTypes.PropertyQualifier
Returns the value of field 'propertyQualifierType'.
getPropertyQualifierType(I) - Method in class org.lexgrid.loader.processor.support.AbstractPropertyQualifierResolver
 
getPropertyQualifierType(I) - Method in interface org.lexgrid.loader.processor.support.PropertyQualifierResolver
 
getPropertyQualifierValueForSource(List<PropertyQualifier>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
getPropertyQualifierValueForSource(List<PropertyQualifier>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getPropertyRefCodingScheme() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getPropertyReference() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'propertyReference'.
getPropertyResolver() - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
Gets the property resolver.
getPropertyResolvers() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getPropertyService() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
Gets the property service.
getPropertyService() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Gets the property service.
getPropertyService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the property service.
getPropertyService() - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
Gets the property service.
getPropertyService() - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Gets the property service.
getPropertyType() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getPropertyType(String) - Static method in class org.lexevs.dao.database.constants.classifier.property.PropertyTypeClassifier
 
getPropertyType() - Method in class org.LexGrid.commonTypes.Property
Returns the value of field 'propertyType'.
getPropertyType(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getPropertyType(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getPropertyType(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getPropertyType(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the property type.
getPropertyType(Mrsat) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
 
getPropertyType(Mrsat) - Method in interface org.lexgrid.loader.rrf.data.property.MrsatUtility
Gets the property type.
getPropertyType(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getPropertyType(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getPropertyType(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getPropertyType(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getPropertyType(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getPropertyType(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getPropertyType() - Method in class org.LexGrid.naming.SupportedProperty
Returns the value of field 'propertyType'.
getPropertyTypeClassifier() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Gets the property type classifier.
getPropertyTypeOption() - Method in class org.LexGrid.LexBIG.DataModel.enums.PropertyType
Returns the value of field 'propertyTypeOption'.
getPropertyTypes() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
getPropertyTypeString(Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertyTypeString(Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getPropertyUId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the property id.
getPropertyUIdByPropertyIdAndName(String, String, String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
getPropertyUIdByPropertyIdAndName(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
getPropertyUIdFromParentUIdAndPropId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Gets the property id from parent id and prop id.
getPropertyUpdates() - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Gets the property updates.
getPropertyUriMapForPropertyType(String, PropertyTypes) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the property URI map that matches the propertyType.
getPropertyUriMapForPropertyType(String, PropertyTypes) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getPropertyUriMapForPropertyType(String, PropertyTypes) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getPropertyValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getPropertyValue(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getPropertyValue(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getPropertyValue(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getPropertyValue(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the property value.
getPropertyValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getPropertyValue(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getPropertyValue(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getPropertyValue(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getPropertyValue(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getPropertyValue(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getPropIds_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getPropnamePrimitive() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'propnamePrimitive'.
getPropnameType() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'propnameType'.
getProvider() - Method in interface org.LexGrid.LexBIG.Extensions.Extendable
Return an identifier for the extension provider.
getProvider() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getProvider() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getProvider() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getProvider() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getPt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
getPt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getPt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getPt_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_costart_sym() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_harts_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_icd10_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_icd9_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_icd9cm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_jart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getPt_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_soc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getPt_soc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPt_whoart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
getPtr() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getPublishName() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getPublishValue() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getQualifier(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
getQualifierDefList(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getQualifierList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
getQualifierListResolvers() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getQualifierName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getQualifierName() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getQualifierName() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
Gets the qualifier name.
getQualifierName() - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.QualifierSort
Gets the qualifier name.
getQualifierName() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
Gets the qualifier name.
getQualifierName() - Method in class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.QualifierSortOption
Gets the qualifier name.
getQualifierName(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatMetauiPropertyQualifierResolver
 
getQualifierName(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatStypePropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaSourceCodePropertyQualifierResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaSourceQualifierResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.SourceAuiAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.TargetAuiAssocQualResolver
 
getQualifierName(T) - Method in interface org.lexgrid.loader.processor.support.QualifierResolver
Gets the qualifier name.
getQualifierName(T) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractSuppressPropertyQualifierResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.CvfAssocQualResolver
 
getQualifierName(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.HcdQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoAuiPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoCvfPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoLuiPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSauiPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoScuiPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSduiPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSuiPropertyQualifierResolver
 
getQualifierName(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefAtuiPropertyQualifierResolver
 
getQualifierName(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefAuiPropertyQualifierResolver
 
getQualifierName(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefCvfPropertyQualifierResolver
 
getQualifierName(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefSatuiPropertyQualifierResolver
 
getQualifierName(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.MrhierHcdPropertyQualifierResolver
 
getQualifierName(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.MrhierPtrPropertyQualifierResolver
 
getQualifierName(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrrankPropertyQualifierResolver
 
getQualifierName(Mrsat) - Method in class org.lexgrid.loader.rrf.processor.support.MrsatRuiAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RelaAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RgAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RuiAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.SruiAssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.Stype1AssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.Stype2AssocQualResolver
 
getQualifierName(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.SuppressAssocQualResolver
 
getQualifierResolver() - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
getQualifierResolver() - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
Gets the qualifier resolver.
getQualifierResolvers() - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
getQualifierResolvers() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getQualifierResolvers() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getQualifierResolvers() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getQualifierText() - Method in class org.LexGrid.relations.AssociationQualification
Returns the value of field 'qualifierText'.
getQualifierType() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
 
getQualifierValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getQualifierValue() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getQualifierValue() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
Gets the qualifier value.
getQualifierValue() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
Gets the qualifier value.
getQualifierValue(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatMetauiPropertyQualifierResolver
 
getQualifierValue(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatStypePropertyQualifierResolver
 
getQualifierValue(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatSuppressPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaSourceCodePropertyQualifierResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaSourceQualifierResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.SourceAuiAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.TargetAuiAssocQualResolver
 
getQualifierValue(T) - Method in interface org.lexgrid.loader.processor.support.QualifierResolver
Gets the qualifier value.
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.CvfAssocQualResolver
 
getQualifierValue(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.HcdQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoAuiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoCvfPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoLuiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSauiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoScuiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSduiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSuiPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrconsoSuppressPropertyQualifierResolver
 
getQualifierValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefAtuiPropertyQualifierResolver
 
getQualifierValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefAuiPropertyQualifierResolver
 
getQualifierValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefCvfPropertyQualifierResolver
 
getQualifierValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefSatuiPropertyQualifierResolver
 
getQualifierValue(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.MrdefSuppressPropertyQualifierResolver
 
getQualifierValue(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.MrhierHcdPropertyQualifierResolver
 
getQualifierValue(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.support.MrhierPtrPropertyQualifierResolver
 
getQualifierValue(Mrconso) - Method in class org.lexgrid.loader.rrf.processor.support.MrrankPropertyQualifierResolver
 
getQualifierValue(Mrsat) - Method in class org.lexgrid.loader.rrf.processor.support.MrsatRuiAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RelaAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RgAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.RuiAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.SruiAssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.Stype1AssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.Stype2AssocQualResolver
 
getQualifierValue(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.SuppressAssocQualResolver
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl.QueryBuilder
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.GetAllConcepts
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces.AbstractJoinQueryRestriction
 
getQuery() - Method in interface org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces.Restriction
 
getQuery(Restriction) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.RestrictionImplementations
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery
 
getQuery() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
getQuery() - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Gets the query.
getQueryParser() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Gets the query parser.
getQueryProcessor() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.IndexQueryParserFactory
 
getQueryResults(Set<AbsoluteCodingSchemeVersionReference>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.LexEVSSourceAssertedSearchServices
 
getQueryTimeout() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getRandomUUID() - Static method in class org.lexevs.dao.database.key.Java5UUIDKeyGenerator
Gets the random uuid.
getRange() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getRange() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getRange() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
getRank(String, String) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrrankUtility
 
getRank(String, String) - Method in interface org.lexgrid.loader.rrf.data.property.MrrankUtility
Gets the rank.
getRank() - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
getRcui() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getRDFResourceLocalName(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
getRdfType() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getRdfType() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getRealCodedNodeGraph(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
getRealCodedNodeSet(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeSet
 
getRef() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
getReferenceAssociation() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getReferenceAssociation() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'referenceAssociation'.
getReferencecode() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'referencecode'.
getReferencedEntry() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedConceptReference
Returns the value of field 'referencedEntry'.
getReferencedPLDefinitions(String, String, String, Boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getReferencedPLDefinitions(String, Boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getReferencedPLDefinitions(String, String, String, Boolean) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Return the map set of pick list id and pick list name that references given entityCode, namespace and optionally propertyId
getReferencedPLDefinitions(String, Boolean) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Return the map set of pick list id and pick list name that references value set definition URI
getReferenceForSchemes(List<CodingScheme>) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getReferenceLink() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Returns the value of field 'referenceLink'.
getReferencename() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Returns the value of field 'referencename'.
getReferences() - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Returns absolute references for resources written by the most recent operation; empty if not applicable.
getReferences() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getReferenceSet() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
getReferencesForVersion(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
getReferenceType() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
 
getReferenceType() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getReferenceUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
 
getReferenceUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getReferenceWeight(ResolvedConceptReference, List<String>) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Return a relative weight between 0 and 1 that indicates how well the given reference maps to a set of words.
getReflexivity() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getRefresh() - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator.RefreshResult
Gets the refresh.
getRefreshedRemaining() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
getRefs() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
getRegisteredListener(String) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
getRegisteredListener(String) - Method in interface org.lexevs.dao.database.service.event.registry.ListenerRegistry
Gets the registered listener.
getRegisteredListeners() - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
getRegisteredListeners() - Method in interface org.lexevs.dao.database.service.event.registry.ListenerRegistry
Gets the registered listeners.
getRegisteredNameFromManifest(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Helper method to check if the Registered name is changed in the Manifest.
getRegisteredStagingDatabases() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
Gets the registered staging databases.
getRegistry() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the registry.
getRegistry() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getRegistry() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
getRegistry() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Gets the registry.
getRegistry() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getRegistry() - Method in class org.lexevs.locator.LexEvsServiceLocator
Gets the registry.
getRegistry() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the registry.
getRegistry() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the registry.
getRegistryDao() - Method in class org.lexevs.registry.service.DatabaseRegistry
Gets the registry dao.
getRegistryDao() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Gets the registry dao.
getRegistryEntriesForUri(String) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the registry entries for uri.
getRegistryEntriesForUri(String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getRegistryEntry() - Method in class org.lexevs.registry.event.events.TagUpdateEvent
Gets the registry entry.
getRegistryEntryForCodingSchemeName(String, String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getRegistryEntryForCodingSchemeName() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
getRegistryEntryForUriAndVersion(String, String) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Gets the registry entry for uri and version.
getRegistryEntryForUriAndVersion(String, String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
getRegistryEntryforWrongVersionOfSchemeLEXEVS_669() - Method in class org.lexevs.dao.database.operation.transitivity.BuildTransitivityTableIssuesWithMock
 
getRegistryFile() - Method in class org.lexevs.registry.service.XmlRegistry
Gets the registry file.
getRegistryListeners() - Method in class org.lexevs.registry.event.RegistryEventSupport
Gets the registry listeners.
getRegistryMetadataEntry() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
Gets the registry metadata entry.
getRegularResolvedVSCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getRegularResolvedVSCodingSchemes() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
 
getRel() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getRel() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getRel() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getRela() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getRela() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getRela() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getRelaNames(UMLSBaseCode.SABString[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Resolve source-assigned relation names corresponding to the given array of standard UMLS relation names (e.g. resolve 'part_of' for 'PAR').
getRelatedSourceCodes(String, String, String, GraphQuery, SortOptionList, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
getRelatedTargetCodes(String, String, String, GraphQuery, SortOptionList, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
getRelation() - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Gets the relation.
getRelation(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getRelation(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the relation.
getRelation(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getRelation(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.MinimalRrfRelationResolver
 
getRelation() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the relation.
getRelationContainer(I) - Method in interface org.lexgrid.loader.processor.support.RelationContainerResolver
Gets the relation container.
getRelationContainer(Object) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationContainerResolver
 
getRelationContainerName() - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Gets the relation container name.
getRelationContainers(String, String, String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder
 
getRelationEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationInverseName(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Return the inverse name of the given RRF-based relation; null if not available.
getRelationLatestRevision(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationLatestRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
getRelationNamesForCodingScheme(String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the relation names for coding scheme.
getRelationNamesForCodingScheme(String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getRelationNamespace(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getRelationNamespace(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the relation namespace.
getRelationNamespace(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getRelationNamespace() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the relation namespace.
getRelationResolver() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
Gets the relation resolver.
getRelationResolver() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
Gets the relation resolver.
getRelations() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceContents
 
getRelations() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
The function returns a Collection of OBORelation
getRelations() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateRelationsBean
Gets the relations.
getRelations(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getRelations.
getRelations() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getRelations.Returns the contents of the collection in an Array.
getRelations(CodingScheme, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getRelationSABs(String[], String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Resolve UMLS source abbreviations corresponding to the given array of source-defined relation names (e.g. resolved from MRREL).
getRelationsAsReference() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getRelationsAsReference.Returns a reference to '_relationsList'.
getRelationsByUId(String, String, Boolean) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationsByUId(String, String, Boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationsContainerName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
getRelationsContainerName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
getRelationsContainerName() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getRelationsContainerName() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getRelationsContainerName() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getRelationsContainerName() - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Returns the value of field 'relationsContainerName'.
getRelationsContainerName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
getRelationsContainerName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
Gets the relations container name.
getRelationsContainerName() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Gets the relations container name.
getRelationsContainerNameForAssociationInstanceId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationsContainerNameForAssociationInstanceId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationsCount() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getRelationsCount.
getRelationService() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Gets the relation service.
getRelationService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the relation service.
getRelationsForMappingScheme(String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
 
getRelationshipCodingSchemeNameForURN(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Get a the urn (registered name) for a coding scheme label used in the relationship tables.
getRelationshipCodingSchemeNameForURN(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Get a the urn (registered name) for a coding scheme label used in the relationship tables.
getRelationshipCodingSchemeNameForURNorName(String, String, boolean) - Method in class org.lexevs.system.ResourceManager
Deprecated.
This works on the SupportedCodingScheme to URN mappings provided in the database.
getRelationshipKind() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getRelationshipName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getRelationshipNames() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
getRelationships() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
getRelationshipsDefinitionResource() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
getRelationsNamesForCodingSchemeUId(String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationsNamesForCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationsUIdsForCodingSchemeUId(String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
getRelationsUIdsForCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Gets the relations id.
getRelationUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
getRelationUId() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationPredicateBean
Gets the relation id.
getRelativeOrder() - Method in class org.LexGrid.versions.EntryState
Returns the value of field 'relativeOrder'.
getReleaseAgency() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'releaseAgency'.
getReleaseDate() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
getReleaseDate() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'releaseDate'.
getReleaseGuid() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
get system release guid
getReleaseId() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'releaseId'.
getReleaseUId() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
 
getReleaseUId() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertSystemReleaseBean
 
getReleaseURI() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'releaseURI'.
getReleaseURN() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'releaseURN'.
getRemaining() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.RemainingRefresher
 
getRemarks() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getRenderingDetail(CodingSchemeSummary) - Static method in class org.LexGrid.LexBIG.admin.Util
Returns rendering detail associated with the following coding scheme summary; null if not available.
getRenderingDetail() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Returns the value of field 'renderingDetail'.
getRenderingDetail(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return detailed rendering information (including coding scheme summary, version and status information, reference links, etc) for the given coding scheme; null if not available.
getRenderingDetail(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getRenderingDetail(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return detailed rendering information (including coding scheme summary, version and status information, reference links, etc) for the given coding scheme; null if not available.
getRenderingDetail(CodingSchemeSummary) - Static method in class org.lexgrid.valuesets.admin.Util
Returns rendering detail associated with the following coding scheme summary; null if not available.
getRenderingDetail(CodingSchemeSummary) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Returns rendering detail associated with the following coding scheme summary; null if not available.
getReplacedBy() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getRepresentationalForm() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
getRepresentationalForm() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'representationalForm'.
getRepresentationalForm(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
getRepresentationalForm(Mrsty) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
getRepresentationalForm(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
getRepresentationalForm(T) - Method in interface org.lexgrid.loader.processor.support.PropertyResolver
Gets the representational form.
getRepresentationalForm(Mrdef) - Method in class org.lexgrid.loader.rrf.processor.support.DefaultDefinitionPropertyResolver
 
getRepresentationalForm(Mrsat) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
getRepresentationalForm(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
getRepresentationalForm(Mrsty) - Method in class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
getRepresentationalForm(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
getRepresentationalForm(Mrconso) - Method in class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
getRepresentationForm() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
getRepresentsRealmOrContext() - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
getRepresentsRealmOrContext(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getRepresentsRealmOrContext.
getRepresentsRealmOrContext() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getRepresentsRealmOrContext.Returns the contents of the collection in an Array.
getRepresentsRealmOrContextAsReference() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getRepresentsRealmOrContextAsReference.Returns a reference to '_representsRealmOrContextList'.
getRepresentsRealmOrContextCount() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getRepresentsRealmOrContextCount.
getRepresentsValueSetDefinition() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'representsValueSetDefinition'.
getRepresentsVersion() - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Gets the represents version.
getRepresentsVersion() - Method in class org.LexGrid.codingSchemes.CodingScheme
Returns the value of field 'representsVersion'.
getRepresentsVersion() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Returns the value of field 'representsVersion'.
getRepresentsVersion() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Returns the value of field 'representsVersion'.
getRepresentsVersion() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'representsVersion'.
getRequiredSourcesCodesFromRelationshipRestriction(List<ConceptReference>, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
getResolutionDetails() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver
 
getResolutionDetails() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
Gets the resolution details.
getResolutionDetails() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
Gets the resolution details.
getResolutionDetails() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.NullNamespaceResolver
 
getResolutionStatus() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
Gets the resolution status.
getResolvedCodedNodeReference(String, String, String, String, boolean, List<String>, List<String>) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Gets the resolved coded node reference.
getResolvedCodedNodeReference(String, String, String, String, boolean, List<String>, List<String>) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
getResolvedCodedNodeReferenceByCodeAndNamespace(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
getResolvedCodedNodeReferenceByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
getResolvedCodedNodeReferenceByCodeAndNamespace(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
getResolvedCodedNodeSetForValueSet(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String, HashMap<String, ValueSetDefinition>) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Resolve a value domain definition.
getResolvedConceptReference(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method getResolvedConceptReference.
getResolvedConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method getResolvedConceptReference.Returns the contents of the collection in an Array.
getResolvedConceptReference() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
getResolvedConceptReference(int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
getResolvedConceptReferenceByCursorAndCode(String, int, int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetEntityResolver
 
getResolvedConceptReferenceCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method getResolvedConceptReferenceCount.
getResolvedConceptReferenceCount() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
getResolvedConceptReferenceIterator() - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetDefinition
 
getResolvedConceptReferenceList(int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns the fully resolved contents of the graph.
getResolvedConceptReferencesForExternalResolvedValueSet(String, String) - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
getResolvedConceptReferencesIterator(CodeHolder, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getResolvedPickListEntry(int) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method getResolvedPickListEntry.
getResolvedPickListEntry() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method getResolvedPickListEntry.Returns the contents of the collection in an Array.
getResolvedPickListEntryCount() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method getResolvedPickListEntryCount.
GetResolvedValueSetData - Class in org.LexGrid.LexBIG.example
 
GetResolvedValueSetData() - Constructor for class org.LexGrid.LexBIG.example.GetResolvedValueSetData
 
getResolvedValueSetForValueSetURI(URI) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getResolvedValueSetForValueSetURI(URI) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Gets the coding scheme representation of a value set for the unique uri of the value set
getResolvedValueSetsForConceptReference(ConceptReference) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getResolvedValueSetsForConceptReference(ConceptReference) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a list of Coding Scheme representations of value sets for an entity represented as a ConceptReference
getResolvedValueSetsforEntityCode(String) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getResolvedValueSetsforEntityCode(String) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a list of very minimal references to a coding scheme representation of a value sets containing entities with this entity code.
getResolvedValueSetsforTextSearch(String, SearchExtension.MatchAlgorithm) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getResolvedValueSetsforTextSearch(String, SearchExtension.MatchAlgorithm) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a list of very minimal references to a coding scheme representation of a value set containing an entity with a similar or exact textual representation of the matchText parameter.
getResolverProcessor() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
getResolverProcessor() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
Gets the resolver processor.
getResolversForCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.DefaultResolverProcessor
Gets the resolvers for code.
getResourceHeader(boolean) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceReader
 
getResourceHeader(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
getResourceLocation() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
getResourceManager() - Method in class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
Gets the resource manager.
getResourceManager() - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Gets the resource manager.
getResourceManager() - Method in class org.lexevs.locator.LexEvsServiceLocator
Deprecated.
getResourceManager() - Method in class org.lexevs.system.constants.SystemVariablesFactory
Gets the resource manager.
getResourceType() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceHeader
 
getResourceType() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getResourceType() - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceType
 
getResourceType() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the resource type.
getResourceUri() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the resource uri.
getResourceUri() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getResourceUri() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getResourceUri() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getResourceUri() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getResourceUri() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getResourceUriAllowedFileTypes() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getResourceUriAllowedFileTypes() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the resource uri allowed file types.
getResourceVersion() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the resource version.
getRestriction() - Method in class org.LexGrid.LexBIG.gui.restrictions.GraphRestrictionGUI
 
getRestrictToAnonymous() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getRestrictToAssociations() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to associations.
getRestrictToAssociationsQualifiers() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to associations qualifiers.
getRestrictToContext(int) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method getRestrictToContext.
getRestrictToContext() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method getRestrictToContext.Returns the contents of the collection in an Array.
getRestrictToContextCount() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method getRestrictToContextCount.
getRestrictToEntityTypes() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to entity types.
getRestrictToSourceCodes() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to source codes.
getRestrictToSourceCodeSystem() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to source code system.
getRestrictToTargetCodes() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to target codes.
getRestrictToTargetCodeSystem() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Gets the restrict to target code system.
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.DateTypeHandler
 
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NCIHistoryChangeTypeTypeHandler
From DB to Java.
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NumericBooleanTypeHandler
 
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.PropertyTypeHandler
From DB to Java.
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.StringArrayTypeHandler
From DB to Java.
getResult(ResultGetter) - Method in class org.lexevs.dao.database.ibatis.sqlmap.VariablePrimaryKeyTypeHandler
From DB to Java.
getResult() - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator.RefreshResult
Gets the result.
getResultComparator(SortOptionList, SortContext, Class<T>) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getResultSet() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getResultSetConcurrency() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getResultSetHoldability() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getResultSetType() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getRevAppliedDate() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
 
getReverseName() - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
getReverseName() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
getReverseName(I) - Method in interface org.lexgrid.loader.processor.support.AssociationResolver
Gets the reverse name.
getReverseName() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'reverseName'.
getRevision() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
get systemRelease object.
getRevision(int) - Method in class org.LexGrid.versions.EditHistory
Method getRevision.
getRevision() - Method in class org.LexGrid.versions.EditHistory
Method getRevision.Returns the contents of the collection in an Array.
getRevisionAsReference() - Method in class org.LexGrid.versions.EditHistory
Method getRevisionAsReference.Returns a reference to '_revisionList'.
getRevisionByGuid(String) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
get revision entry for a given guid.
getRevisionByGuid(String) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getRevisionByUri(String) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
get revision entry for a given uri.
getRevisionByUri(String) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getRevisionCount() - Method in class org.LexGrid.versions.EditHistory
Method getRevisionCount.
getRevisionDao() - Method in class org.lexevs.dao.database.access.DaoManager
 
getRevisionDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the revision daos.
getRevisionDate() - Method in class org.LexGrid.versions.Revision
Returns the value of field 'revisionDate'.
getRevisionEditing() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getRevisionGuid() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
 
getRevisionId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
getRevisionId() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Gets the revision id.
getRevisionId() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getRevisionId() - Method in class org.LexGrid.versions.Revision
Returns the value of field 'revisionId'.
getRevisionIdForAfterDate() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDaoTest
 
getRevisionIdForDate(Timestamp) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
 
getRevisionIdForDate(Timestamp) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getRevisionIdForFirstDate() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDaoTest
 
getRevisionIdForSecondDate() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDaoTest
 
getRevisionIdForThirdDate() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDaoTest
 
getRevisionUId() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
 
getRevisionUIdById(String) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
get revision guid by uri.
getRevisionUIdById(String) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getRevisionWhenNew(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
getRevisionWhenNew(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getRevisionWhenNew(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getRg() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getRmeta() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getRole() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Gets the role.
getRole() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the role.
getRole() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getRole() - Method in class org.LexGrid.commonTypes.Source
Returns the value of field 'role'.
getRole(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrconsoSourceResolver
 
getRole(Mrdef) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrdefSourceResolver
 
getRole(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatAuiCodePropertyQualifierResolver
 
getRole(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatSourceResolver
 
getRole(I) - Method in interface org.lexgrid.loader.processor.support.SourceResolver
 
getRoleDefList(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
getRoot(List<SupportedHierarchy>) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the root.
getRoot(LexEvsTreeNode) - Static method in class org.lexevs.tree.utility.TreeUtility
Deprecated.
Gets the root.
getRoot(List<SupportedHierarchy>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the root.
getRoot(LexEvsTreeNode) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.TreeUtility
Gets the root.
getRootBuilder() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getRootCode() - Method in class org.LexGrid.naming.SupportedHierarchy
Returns the value of field 'rootCode'.
getRootCodes(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getRootCodes() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
 
getRootCodesTest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
getRootColumn() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the root column.
getRootConcept() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getRootConceptReferenceIterator() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
getRootConceptReferences(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the root concept references.
getRootConceptReferences(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getRootCuis - Variable in class org.lexgrid.loader.meta.staging.MetaJdbcMrconsoStagingDao
 
getRootLocation() - Method in class org.lexevs.dao.indexer.api.IndexerService
 
getRootNodeResolver() - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Gets the root node resolver.
getRootNodeResolver() - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Gets the root node resolver.
getRootNodeResolver() - Method in interface org.lexgrid.loader.processor.decorator.RootResolvingNodeDecorator
Gets the root node resolver.
getRootNodes(String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getRootNodes(String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getRoots(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, SortOptionList, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
getRoots() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
getRrfDir() - Method in class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
Gets the rrf dir.
getRrfDir() - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Gets the rrf dir.
getRrfDir() - Method in class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
Gets the rrf dir.
getRrfDir() - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Gets the rrf dir.
getRrfFile() - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Gets the rrf file.
getRrfrelationType() - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
Gets the rrfrelation type.
getRsab() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getRui() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getRuleOrder() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'ruleOrder'.
getSab() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getSab() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getSab() - Method in class org.lexgrid.loader.rrf.staging.model.CodeSabPair
Gets the sab.
getSab() - Method in interface org.lexgrid.loader.umls.data.codingscheme.CodingSchemeSabNameSetter
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
Gets the sab.
getSab(I) - Method in class org.lexgrid.loader.umls.reader.support.AbstractSabSkippingPolicy
Gets the sab.
getSab() - Method in class org.lexgrid.loader.umls.reader.support.AbstractSabSkippingPolicy
Gets the sab.
getSab(Mrdef) - Method in class org.lexgrid.loader.umls.reader.support.MrdefSabSkipPolicy
 
getSab(Mrrel) - Method in class org.lexgrid.loader.umls.reader.support.MrrelSabSkipPolicy
 
getSab(Mrsat) - Method in class org.lexgrid.loader.umls.reader.support.MrsatAssocQualSkipPolicy
 
getSab(Mrsat) - Method in class org.lexgrid.loader.umls.reader.support.MrsatSkipPolicy
 
getSab() - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicy
Gets the sab.
getSabin() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSameAs() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getSameAs() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getSatui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getSatui() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getSatui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getSaui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSavedBy() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getScc() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSchema(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getSchema(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getSchema() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getSchemaClassDefinition(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getSchemaClassDefinition(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
getSchemaURL() - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Return a reference to the XML Schema that this loader supports.
getSchemaURL() - Method in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
Return a reference to the XML Schema that this loader supports.
getSchemaURL() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
getSchemaURL() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
getSchemaVersion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getSchemaVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Export.LexGrid_Exporter
Return the version identifier of the schema that this loader supports.
getSchemaVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
Return the version identifier of the schema that this loader supports.
getSchemaVersion() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
getSchemaVersion() - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
getSchemaVersionForCodingScheme(String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the schema version for coding scheme.
getScheme() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getSchemeUid(String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getScit() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getScope() - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
getScore() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getScore() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getScoreDoc() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ProxyProtectedScoreDocWrapper
 
getScriptsuffix() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Gets the scriptsuffix.
getScriptType() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Gets the script type.
getScui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSdui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSearchAlgorithm(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSearchDao() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getSearchDao(Set<CodingSchemeReference>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getSearchDaos() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getSearchDesignationOptionName() - Method in class org.LexGrid.LexBIG.DataModel.enums.SearchDesignationOption
Returns the value of field 'searchDesignationOptionName'.
getSearchExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getSearchExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSearchExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to provide additional sorting of query results.
getSearchExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSearchIndexName() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
getSearchIndexService() - Method in class org.lexevs.dao.index.service.entity.SearchIndexAwareEntityIndexService
 
getSearchIndexService() - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
getSearchLuceneIndexTemplate() - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
getSearchLuceneIndexTemplate() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getSelectedCodeSet() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
getSelectedCodeSet() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getSelfReferencingAssociationPolicy() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getSelfReferencingAssociationPolicy() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getSequenceName() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Gets the sequence name.
getSequentialUUID() - Static method in class org.lexevs.dao.database.key.COMBKeyGenerator
Gets the random uuid.
getServer() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getServer() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getServiceDN() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getServiceHandle() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Returns the value of field 'serviceHandle'.
getServiceHelper() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getServiceManager(Object) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getServiceManager(Object) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Validate the credentials and return an interface to the LexBig service manager.
getServiceMetadata() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getServiceMetadata() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return an interface to perform system-wide query over metadata for loaded code systems and providers.
getSeverity() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.AbstractError
 
getSeverity() - Method in interface edu.mayo.informatics.lexgrid.convert.validator.error.LoadValidationError
Gets the severity.
getSeverity() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getSf() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSHA1() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Returns a message digest to be used for fixed-length key generation. s
getShell() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getShell() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
getShell() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getShowCodesInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
Indicates whether codes should be displayed with text in the graph.
getShowCodesInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
Indicates whether codes should be displayed with text in the graph.
getShowCodesInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
Indicates whether codes should be displayed with text in the graph.
getShowSecondaryRelInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
Indicates whether edges should be drawn between secondary nodes.
getShowSecondaryRelInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
Indicates whether edges should be drawn between secondary nodes.
getShowSecondaryRelInGraph() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
Indicates whether edges should be drawn between secondary nodes.
getSkipPolicy() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
Gets the skip policy.
getSkipPolicy() - Method in class org.lexgrid.loader.reader.SkippingItemReader
Gets the skip policy.
getSl() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getSlaveGroupItemReader() - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
getSlc() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSmq_algorithm() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getSmq_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_description() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_level() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_note() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSmq_source() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSMTPServer() - Method in class org.lexevs.system.constants.SystemVariables
 
getSoc_abbrev() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getSoc_abbrev() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
getSoc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getSoc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
getSoc_costart_sym() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_harts_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_icd10_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_icd9_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_icd9cm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_jart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
getSoc_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSoc_whoart_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSon() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSortAlgorithm(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSortAlgorithm(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getSortAlgorithm(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns an instance of the sort extension registered with the given name.
getSortAlgorithms(SortContext) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getSortAlgorithms(SortContext) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Returns a description of all registered extensions used to provide additional sorting of query results in the given context.
getSortClazz() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Gets the sort clazz.
getSortDescription(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method getSortDescription.
getSortDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method getSortDescription.Returns the contents of the collection in an Array.
getSortDescriptionCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method getSortDescriptionCount.
getSortedExpandedTreeItems(List<VSHierarchyNode>) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getSortedNodeIterator(SortOptionList, Set<GNode>) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Returns an iterator that will sort the given nodes according to the specified sort options.
getSortExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns the description of a registered extension matching the given name.
getSortExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSortExtensions() - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Returns a description of all registered extensions used to provide additional sorting of query results.
getSortExtensions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
getSortForExtensionName(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Gets the sort for extension name.
getSortingListProcessor() - Method in class org.lexgrid.loader.processor.HighestRankingListProcessor
Gets the sorting list processor.
getSortList() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getSortOptions() - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSortOptions() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Gets the sort options.
getSorts() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsBean
 
getSorts() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getSorts() - Method in class org.lexevs.dao.database.utility.DaoUtility.SortContainer
 
getSource() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseMapRecord
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
getSource() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getSource() - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
getSource() - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Gets the source.
getSource(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getSource.
getSource() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getSource.Returns the contents of the collection in an Array.
getSource(int) - Method in class org.LexGrid.commonTypes.Property
Method getSource.
getSource() - Method in class org.LexGrid.commonTypes.Property
Method getSource.Returns the contents of the collection in an Array.
getSource() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getSource() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getSource(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getSource.
getSource() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getSource.Returns the contents of the collection in an Array.
getSource(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrconsoSourceResolver
 
getSource(Mrdef) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrdefSourceResolver
 
getSource(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatAuiCodePropertyQualifierResolver
 
getSource(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatSourceResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaRelationResolver
 
getSource(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getSource(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the source.
getSource(I) - Method in interface org.lexgrid.loader.processor.support.SourceResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.MinimalRrfRelationResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.AuiBasedRelationResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
getSource(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
 
getSource() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the source.
getSource(int) - Method in class org.LexGrid.relations.AssociationPredicate
Method getSource.
getSource() - Method in class org.LexGrid.relations.AssociationPredicate
Method getSource.Returns the contents of the collection in an Array.
getSource() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getSource() - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
getSource(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method getSource.
getSource() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getSource.Returns the contents of the collection in an Array.
getSource(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getSource.
getSource() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getSource.Returns the contents of the collection in an Array.
getSource_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getSourceAbbreviationsResource() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
getSourceAndSubRefAsVector(Vector<OBODbxref>) - Static method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getSourceAsReference() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAsReference() - Method in class org.LexGrid.commonTypes.Property
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAsReference() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAsReference() - Method in class org.LexGrid.relations.AssociationPredicate
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAsReference() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAsReference() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getSourceAsReference.Returns a reference to '_sourceList'.
getSourceAssertedResolvedVSCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getSourceAssertedResolvedVSCodingSchemes() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
 
getSourceAssertedValueSetEntitiesForEntityCode(String, String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns list of entities for top node entity code exact match.
getSourceAssertedValueSetEntitiesForEntityCode(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getSourceAssertedValueSetEntitiesForEntityCode(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getSourceAssertedValueSetEntitiesForEntityCode(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getSourceAssertedValueSetEntitiesForURI(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetEntitiesForURI(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of ResolvedConceptReference representations of the entities belonging to the CodingScheme representation of this value set identified by its uri designation as a String
getSourceAssertedValueSetEntityUidsforPredicateUid(int, int) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getSourceAssertedValueSetEntityUidsforPredicateUid(int, int) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getSourceAssertedValueSetforDescription(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getSourceAssertedValueSetforDescription(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getSourceAssertedValueSetforMemberEntityCode(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getSourceAssertedValueSetforMemberEntityCode(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getSourceAssertedValueSetforTopNodeEntityCode(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getSourceAssertedValueSetforTopNodeEntityCode(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getSourceAssertedValueSetforTopNodeEntityCode(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetforTopNodeEntityCode(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of Coding Scheme representations of a value set with the code that has the class instance defined relationship to this value set top node
getSourceAssertedValueSetforValueSetMemberEntityCode(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetforValueSetMemberEntityCode(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of coding scheme representations of a value set containing entities with this entity code.
getSourceAssertedValueSetForValueSetURI(URI) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetForValueSetURI(URI) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Gets the coding scheme representation of a value set for the unique uri of the value set
getSourceAssertedValueSetIteratorForURI(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetIteratorForURI(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns an iterator over ResolvedConceptReference representations of the entities belonging to the CodingScheme representation of this value set identified by its uri designation as a String
getSourceAssertedValueSetService(AssertedValueSetParameters) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getSourceAssertedValueSetService(String, String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getSourceAssertedValueSetsForConceptReference(ConceptReference) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetsForConceptReference(ConceptReference) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of Coding Scheme representations of value sets for an entity represented as a ConceptReference
getSourceAssertedValueSetsforTextSearch(String, SearchExtension.MatchAlgorithm) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetsforTextSearch(String, SearchExtension.MatchAlgorithm) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of very minimal references to a coding scheme representation of a value set containing an entity with a similar or exact textual representation of the matchText parameter.
getSourceAssertedValueSetsForVSMemberEntityCode(String, String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
A list of value set top nodes represented as Entity objects which are related to this the concept defined by the exact match of the unique identifier.
getSourceAssertedValueSetsForVSMemberEntityCode(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getSourceAssertedValueSetTopNodeDescription(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
A list of value set top nodes represented as Entity objects which are related to this the concept defined by the exact match of the description.
getSourceAssertedValueSetTopNodeDescription(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getSourceAssertedValueSetTopNodeForEntityCode(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
A list of value set top nodes represented as Entity objects which are related to this the concept defined by the exact match of the unique identifier.
getSourceAssertedValueSetTopNodeForEntityCode(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getSourceAssertedValueSetTopNodesForRootCode(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSourceAssertedValueSetTopNodesForRootCode(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Assumes a hierarchy of value sets is divided amongst a set of root nodes that have a relationship to this rootCode parameter which is a unique entity identifier in the system.
getSourceAssociation(GAssociationInfo) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getSourceAssociations() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getSourceAssociations(SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getSourceCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
getSourceCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getSourceCode() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getSourceCodesResolvedConceptReferencesIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getSourceCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Gets the source coding scheme.
getSourceCodingScheme() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'sourceCodingScheme'.
getSourceCodingSchemeName(AbsoluteCodingSchemeVersionReference) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
getSourceCodingSchemeName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Gets the source coding scheme name.
getSourceCodingSchemeUid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getSourceCodingSchemeVersion() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'sourceCodingSchemeVersion'.
getSourceColumnName(LexEvsTreeDao.Direction) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Gets the source column name.
getSourceColumnName(LexEvsTreeDao.Direction) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Gets the source column name.
getSourceConcept() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
getSourceConceptReferences() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
getSourceCount() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method getSourceCount.
getSourceCount() - Method in class org.LexGrid.commonTypes.Property
Method getSourceCount.
getSourceCount() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method getSourceCount.
getSourceCount() - Method in class org.LexGrid.relations.AssociationPredicate
Method getSourceCount.
getSourceCount() - Method in class org.LexGrid.valueSets.PickListDefinition
Method getSourceCount.
getSourceCount() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method getSourceCount.
getSourceDefinedTree() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getSourceDefinedTree() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
getSourceDescription() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getSourceEntityCode() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the source entity code.
getSourceEntityCode() - Method in class org.lexevs.dao.database.access.association.model.Triple
 
getSourceEntityCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Gets the source entity code.
getSourceEntityCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the source entity code.
getSourceEntityCode() - Method in class org.LexGrid.relations.AssociationSource
Returns the value of field 'sourceEntityCode'.
getSourceEntityCodeNamespace() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the source entity code namespace.
getSourceEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Gets the source entity code namespace.
getSourceEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the source entity code namespace.
getSourceEntityCodeNamespace() - Method in class org.LexGrid.relations.AssociationSource
Returns the value of field 'sourceEntityCodeNamespace'.
getSourceEntityNamespace() - Method in class org.lexevs.dao.database.access.association.model.Triple
 
getSourceId(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
 
getSourceId(T) - Method in interface org.lexgrid.loader.processor.support.PropertyLinkResolver
Gets the source id.
getSourceList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
getSourceName() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getSourceName() - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
getSourceNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getSourceNamespace(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getSourceNamespace(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the source namespace.
getSourceNamespace(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getSourceNamespace(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
getSourceNamespace() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the source namespace.
getSourceNodesForTarget(String, String, String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getSourceNodesForTarget(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getSourceOf() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'sourceOf'.
getSourceOrTargetCodesResolvedConceptReferencesIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getSourceOrTargetConceptReferences() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
getSourceOrTargetResolvedIteratorConceptReferences() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getSourcePrefix() - Method in class org.lexevs.dao.database.ibatis.parameter.SourceAndTargetMappingPrefixedParameter
 
getSourcePresentations(ResolvedConceptReference, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns all assigned presentations matching the given source abbreviation (SAB).
getSourceProperty() - Method in class org.LexGrid.concepts.PropertyLink
Returns the value of field 'sourceProperty'.
getSourcePropertyIdResolver() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getSourcePropertyIdResolver() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getSourcePropertyUId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Gets the source property id.
getSourceResolvedIteratorConceptReferences() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getSourceResolvers() - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
getSourceResolvers() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getSources() - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Gets the sources.
getSourceScheme(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getSourceScheme(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the source scheme.
getSourceScheme(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getSourceScheme() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the source scheme.
getSourceSchemePrefix() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getSourceSchemeUri() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getSourceSchemeVersion() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getSourcesFromTarget(String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getSourcesFromTarget(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getSourceText(AssociatedConcept) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Returns a string containing the names of all sources asserted on the association to the concept delimited by '|'.
getSourceValueSetTree() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
getSourceValueSetTree() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getSourceValueSetTree() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getSourceValueSetTree() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
getSourceValueSetTreeBranch(VSHierarchyNode, LexEVSTreeItem) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
getSourceValueSetTreeBranch(VSHierarchyNode, LexEVSTreeItem) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getSourceValueSetTreeBranch(VSHierarchyNode, LexEVSTreeItem) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
getSourceValueSetTreeBranch(VSHierarchyNode, LexEVSTreeItem) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
getSourceVersionString(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getSpans(IndexReader) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
getSpringManagedBean() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the spring managed bean.
getSpringManagedBean() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the spring managed bean.
getSQLConnectionInfoForCodeSystem(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the sQL connection info for code system.
getSQLConnectionInfoForHistory(String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the sQL connection info for history.
getSQLConnectionInfoForHistoryLoad() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Get the connection information to use for loading a new history file.
getSQLConnectionInfoForLoad() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Get the connection information to use for loading a new db.
getSqlImplementedMethodsDao() - Method in class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
Gets the sql implemented methods dao.
getSQLInterface(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the sQL interface.
getSQLInterfaceForHistory(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the sQL interface for history.
getSqlMapClientTemplate() - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Gets the sql map client template.
getSqlMapClientTemplate() - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapClientTemplateInserter
Gets the sql map client template.
getSqlMapExecutor() - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
Gets the sql map executor.
getSqlServers() - Method in class org.lexevs.system.constants.SystemVariables
 
getSQLTableConstants() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Gets the sQL table constants.
getSQLTableConstants() - Method in class org.lexevs.dao.database.connection.SQLInterface
Gets the sQL table constants.
getSQLTableConstants() - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
getSQLTableUtilities() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Deprecated.
getSQLTableUtilities() - Method in class org.lexevs.dao.database.connection.SQLInterface
Deprecated.
getSrl() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSrl() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSrui() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getSsn() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getStagingManager() - Method in class org.lexgrid.loader.listener.CleanupListener
Gets the staging manager.
getStagingPrefix() - Method in class org.lexevs.registry.model.RegistryEntry
 
getStartTime() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'startTime'.
getState() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'state'.
getStatements() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
Returns the pre-defined statements
getStatementSQL(String) - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
Returns a specific statement
getStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
getStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
getStatus() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getStatus() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the status.
getStatus(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the status.
getStatus() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'status'.
getStatus() - Method in interface org.LexGrid.LexBIG.Extensions.Export.Exporter
Returns status of the current or most recent export operation; null if no operation has been attempted.
getStatus() - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Returns status of the current or most recent load or validate operation; null if no operation has been attempted.
getStatus() - Method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToStatus
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.loaders.StatusReportingCallback
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
getStatus() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getStatus() - Method in interface org.LexGrid.LexBIG.Utility.logging.StatusReporter
 
getStatusComposite(Composite) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getStatusComposite(Composite, StatusReporter) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getStatusCompositeForPickList(Composite, StatusReporter) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getStatusCompositeForValueSets(Composite, StatusReporter) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getStatusText(Composite) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
getStn() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getStore() - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
getStr() - Method in class org.lexgrid.exporter.owlrdf.StringHelper
 
getStr() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getStream() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
getStreamingOn() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
getStrFormat() - Method in class org.lexgrid.exporter.owlrdf.StringHelper
 
getStrictOWLImplementation() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'strictOWLImplementation'.
getStringArrayOption(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getStringArrayOption(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
 
getStringArrayOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getStringArrayOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the string array options.
getStringFromURI(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getStringFromURI(URI) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getStringOption(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getStringOption(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the string option.
getStringOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getStringOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the string options.
getStt() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSty() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getStyleRanges() - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
getStype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getStype() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getStype1() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getStype2() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getSubclassAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSubclassAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSubClassOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getSubClassOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getSubcodesAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSubcodesAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSubConcepts(String, CodingSchemeVersionOrTag, String, String, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getSubConcepts(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getSubConcepts(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getSubConcepts(String, CodingSchemeVersionOrTag, String, String, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the sub concepts.
getSubConcepts(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the sub concepts.
getSubConcepts(String, CodingSchemeVersionOrTag, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the sub concepts.
getSubConcepts(String, CodingSchemeVersionOrTag, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getSubConcepts(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getSubConcepts(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getSubConcepts(String, CodingSchemeVersionOrTag, String, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the sub concepts.
getSubConcepts(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the sub concepts.
getSubConcepts(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the sub concepts.
getSubjectColumn() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the subject column.
getSubPropertyOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
 
getSubPropertyOf() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
 
getSubref() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getSubRef() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Gets the sub ref.
getSubRef() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Gets the sub ref.
getSubRef() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
getSubRef() - Method in class org.LexGrid.commonTypes.Source
Returns the value of field 'subRef'.
getSubRef(Mrconso) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrconsoSourceResolver
 
getSubRef(Mrdef) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrdefSourceResolver
 
getSubRef(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatAuiCodePropertyQualifierResolver
 
getSubRef(Mrsat) - Method in class org.lexgrid.loader.meta.processor.support.MetaMrsatSourceResolver
 
getSubRef(I) - Method in interface org.lexgrid.loader.processor.support.SourceResolver
 
getSubrefAndDescription() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
getSubsequentTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
Gets the subsequent term lucene search field.
getSubsequentTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSubStringSearch
 
getSubsequentTermLuceneSearchField() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.SubStringSearch
 
getSubset() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
getSui() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getSui() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSui() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getSuperclassAssoc() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSuperclassAssocReverse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getSupplementsUri() - Method in class org.lexevs.registry.model.RegistryEntry
 
getSupplementsVersion() - Method in class org.lexevs.registry.model.RegistryEntry
 
getSupportedAssociation(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociation.
getSupportedAssociation() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociation.Returns the contents of the collection in an Array.
getSupportedAssociationAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationAsReference.Returns a reference to '_supportedAssociationList'.
getSupportedAssociationCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationCount.
getSupportedAssociationFromMappings(Mappings, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getSupportedAssociationQualifier(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationQualifier.
getSupportedAssociationQualifier() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationQualifier.Returns the contents of the collection in an Array.
getSupportedAssociationQualifierAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationQualifierAsReference.Returns a reference to '_supportedAssociationQualifierList'.
getSupportedAssociationQualifierCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedAssociationQualifierCount.
getSupportedAssociationQualifiers() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedAssociationQualifiers(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedAssociations(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedAssociationWithName(Mappings, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getSupportedAttribute(String, String, String, Class<T>) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
 
getSupportedAttributeLocalNameForUri(String, CodingSchemeVersionOrTag, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
 
getSupportedAttributeTag() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Gets the supported attribute tag.
getSupportedAttributeTag() - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the supported attribute tag.
getSupportedAttributeTemplate() - Method in class org.lexgrid.loader.dao.SupportedAttributeSupport
Gets the supported attribute template.
getSupportedAttributeTemplate() - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Gets the supported attribute template.
getSupportedAttributeTemplate() - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
getSupportedAttributeTemplate() - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
getSupportedAttributeTemplate() - Method in class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
Gets the supported attribute template.
getSupportedClassComparators() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
Gets the supported class comparators.
getSupportedCodeSystemOrURN() - Method in class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces.CodeSystemRestriction
 
getSupportedCodeSystems(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedCodingScheme(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedCodingScheme.
getSupportedCodingScheme() - Method in class org.LexGrid.naming.Mappings
Method getSupportedCodingScheme.Returns the contents of the collection in an Array.
getSupportedCodingSchemeAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedCodingSchemeAsReference.Returns a reference to '_supportedCodingSchemeList'.
getSupportedCodingSchemeCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedCodingSchemeCount.
getSupportedCodingSchemeFromMappings(Mappings, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getSupportedCodingSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getSupportedCodingSchemes() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return a list of coding schemes and versions that are supported by this service, along with their status.
getSupportedConceptDomain(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedConceptDomain.
getSupportedConceptDomain() - Method in class org.LexGrid.naming.Mappings
Method getSupportedConceptDomain.Returns the contents of the collection in an Array.
getSupportedConceptDomain(Entity, String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getSupportedConceptDomainAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedConceptDomainAsReference.Returns a reference to '_supportedConceptDomainList'.
getSupportedConceptDomainCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedConceptDomainCount.
getSupportedConceptPropertiesMap() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
getSupportedConceptPropertiesMap() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getSupportedConceptRelationshipsMap() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
getSupportedConceptRelationshipsMap() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getSupportedContainerName(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedContainerName.
getSupportedContainerName() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContainerName.Returns the contents of the collection in an Array.
getSupportedContainerNameAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContainerNameAsReference.Returns a reference to '_supportedContainerNameList'.
getSupportedContainerNameCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContainerNameCount.
getSupportedContainerNameFromMappings(Mappings, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getSupportedContainerNames() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedContext(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedContext.
getSupportedContext() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContext.Returns the contents of the collection in an Array.
getSupportedContextAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContextAsReference.Returns a reference to '_supportedContextList'.
getSupportedContextCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedContextCount.
getSupportedContexts() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedContexts(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedDatabaseTypes() - Method in class org.lexevs.dao.database.key.incrementer.AbstractKeyIncrementer
Gets the supported database types.
getSupportedDatabaseTypes() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
 
getSupportedDatabaseTypes() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
getSupportedDatabaseTypes() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
 
getSupportedDataType(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedDataType.
getSupportedDataType() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDataType.Returns the contents of the collection in an Array.
getSupportedDataTypeAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDataTypeAsReference.Returns a reference to '_supportedDataTypeList'.
getSupportedDataTypeCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDataTypeCount.
getSupportedDataTypes() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedDegreeOfFidelity(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedDegreeOfFidelity.
getSupportedDegreeOfFidelity() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDegreeOfFidelity.Returns the contents of the collection in an Array.
getSupportedDegreeOfFidelityAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDegreeOfFidelityAsReference.Returns a reference to '_supportedDegreeOfFidelityList'.
getSupportedDegreeOfFidelityCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedDegreeOfFidelityCount.
getSupportedDegreesOfFidelity() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedElement(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method getSupportedElement.
getSupportedElement() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method getSupportedElement.Returns the contents of the collection in an Array.
getSupportedElementCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method getSupportedElementCount.
getSupportedEntityType(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedEntityType.
getSupportedEntityType() - Method in class org.LexGrid.naming.Mappings
Method getSupportedEntityType.Returns the contents of the collection in an Array.
getSupportedEntityTypeAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedEntityTypeAsReference.Returns a reference to '_supportedEntityTypeList'.
getSupportedEntityTypeCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedEntityTypeCount.
getSupportedEntityTypes() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedHierarchies() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedHierarchies(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Gets the supported hierarchies.
getSupportedHierarchies(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns an array of hierarchies supported by the given coding scheme and matching the specified ID.
getSupportedHierarchies(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an array of hierarchies supported by the given coding scheme.
getSupportedHierarchies(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an array of hierarchies supported by the given coding scheme and matching the specified ID.
getSupportedHierarchies(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Gets the supported hierarchies.
getSupportedHierarchy(LexBIGService, String, CodingSchemeVersionOrTag, String) - Static method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Returns a description of the hierarchy defined by the given coding scheme and matching the specified ID.
getSupportedHierarchy(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedHierarchy.
getSupportedHierarchy() - Method in class org.LexGrid.naming.Mappings
Method getSupportedHierarchy.Returns the contents of the collection in an Array.
getSupportedHierarchyAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedHierarchyAsReference.Returns a reference to '_supportedHierarchyList'.
getSupportedHierarchyCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedHierarchyCount.
getSupportedIdMappings() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getSupportedLanguage(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedLanguage.
getSupportedLanguage() - Method in class org.LexGrid.naming.Mappings
Method getSupportedLanguage.Returns the contents of the collection in an Array.
getSupportedLanguageAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedLanguageAsReference.Returns a reference to '_supportedLanguageList'.
getSupportedLanguageCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedLanguageCount.
getSupportedLanguages() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedLanguages() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
getSupportedLanguages(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedLexGridSchemaVersionForCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the supported lex grid schema version for coding scheme.
getSupportedLexGridSchemaVersionForHistory(String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the supported lex grid schema version for history.
getSupportedMatchAlgorithms() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
getSupportedMatchAlgorithms() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getSupportedNamespace(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedNamespace.
getSupportedNamespace() - Method in class org.LexGrid.naming.Mappings
Method getSupportedNamespace.Returns the contents of the collection in an Array.
getSupportedNamespaceAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedNamespaceAsReference.Returns a reference to '_supportedNamespaceList'.
getSupportedNamespaceCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedNamespaceCount.
getSupportedNameSpaceFromMappings(Mappings, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
getSupportedNamespaces() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedNamespaces(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedOutputFormats() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
Get the supported Output formats for this input format.
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridLDAP
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
getSupportedOutputFormats() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
getSupportedProperties() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedProperties(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedPropertiesOfTypeComment(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns an list of properties supported with propertyType of 'comment'.
getSupportedPropertiesOfTypeComment(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getSupportedPropertiesOfTypeDefinition(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns an list of properties supported with propertyType of 'definition'.
getSupportedPropertiesOfTypeDefinition(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getSupportedPropertiesOfTypePresentation(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns an list of properties supported with propertyType of 'presentation'.
getSupportedPropertiesOfTypePresentation(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getSupportedPropertiesOfTypeProperty(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Returns an list of properties supported with propertyType of 'property'.
getSupportedPropertiesOfTypeProperty(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getSupportedProperty(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedProperty.
getSupportedProperty() - Method in class org.LexGrid.naming.Mappings
Method getSupportedProperty.Returns the contents of the collection in an Array.
getSupportedPropertyAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyAsReference.Returns a reference to '_supportedPropertyList'.
getSupportedPropertyCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyCount.
getSupportedPropertyForPropertyType(String, String, PropertyTypes) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Gets the property URI map that matches the propertyType.
getSupportedPropertyForPropertyType(String, String, PropertyTypes) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
getSupportedPropertyLink(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyLink.
getSupportedPropertyLink() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyLink.Returns the contents of the collection in an Array.
getSupportedPropertyLinkAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyLinkAsReference.Returns a reference to '_supportedPropertyLinkList'.
getSupportedPropertyLinkCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyLinkCount.
getSupportedPropertyLinks() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedPropertyQualifier(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifier.
getSupportedPropertyQualifier() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifier.Returns the contents of the collection in an Array.
getSupportedPropertyQualifierAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierAsReference.Returns a reference to '_supportedPropertyQualifierList'.
getSupportedPropertyQualifierCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierCount.
getSupportedPropertyQualifiers() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedPropertyQualifiers(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedPropertyQualifierType(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierType.
getSupportedPropertyQualifierType() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierType.Returns the contents of the collection in an Array.
getSupportedPropertyQualifierTypeAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierTypeAsReference.Returns a reference to '_supportedPropertyQualifierTypeList'.
getSupportedPropertyQualifierTypeCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyQualifierTypeCount.
getSupportedPropertyQualifierTypes() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedPropertyType(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyType.
getSupportedPropertyType() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyType.Returns the contents of the collection in an Array.
getSupportedPropertyTypeAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyTypeAsReference.Returns a reference to '_supportedPropertyTypeList'.
getSupportedPropertyTypeCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedPropertyTypeCount.
getSupportedPropertyTypes() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedRelations(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedRepresentationalForm(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedRepresentationalForm.
getSupportedRepresentationalForm() - Method in class org.LexGrid.naming.Mappings
Method getSupportedRepresentationalForm.Returns the contents of the collection in an Array.
getSupportedRepresentationalFormAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedRepresentationalFormAsReference.Returns a reference to '_supportedRepresentationalFormList'.
getSupportedRepresentationalFormCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedRepresentationalFormCount.
getSupportedRepresentationalForms() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedSortOrder(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedSortOrder.
getSupportedSortOrder() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSortOrder.Returns the contents of the collection in an Array.
getSupportedSortOrderAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSortOrderAsReference.Returns a reference to '_supportedSortOrderList'.
getSupportedSortOrderCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSortOrderCount.
getSupportedSortOrders() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedSource(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedSource.
getSupportedSource() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSource.Returns the contents of the collection in an Array.
getSupportedSourceAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceAsReference.Returns a reference to '_supportedSourceList'.
getSupportedSourceCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceCount.
getSupportedSourceRole(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceRole.
getSupportedSourceRole() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceRole.Returns the contents of the collection in an Array.
getSupportedSourceRoleAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceRoleAsReference.Returns a reference to '_supportedSourceRoleList'.
getSupportedSourceRoleCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedSourceRoleCount.
getSupportedSourceRoles() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedSources() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedSources(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
getSupportedSources(LexBIGService) - Method in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
getSupportedSources(Entity) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getSupportedStatus() - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
getSupportedStatus(int) - Method in class org.LexGrid.naming.Mappings
Method getSupportedStatus.
getSupportedStatus() - Method in class org.LexGrid.naming.Mappings
Method getSupportedStatus.Returns the contents of the collection in an Array.
getSupportedStatusAsReference() - Method in class org.LexGrid.naming.Mappings
Method getSupportedStatusAsReference.Returns a reference to '_supportedStatusList'.
getSupportedStatusCount() - Method in class org.LexGrid.naming.Mappings
Method getSupportedStatusCount.
getSupportedSubsets() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getSupportedSynonyms() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getSuppress() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
getSuppress() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getSuppress() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
getSuppress() - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
getSuppress() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
getSuppress() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
getSvc() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
getSver() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getSwtComposite() - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
getSwtComposite() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
getSymmetry() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getSynonyms() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
getSystemEventListeners() - Method in class org.lexevs.system.event.SystemEventSupport
 
getSystemRelease() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
getSystemRelease() - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertSystemReleaseBean
get systemRelease object.
getSystemRelease(String, URI) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Gets the system release.
getSystemRelease(String, URI) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getSystemRelease(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method getSystemRelease.
getSystemRelease() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method getSystemRelease.Returns the contents of the collection in an Array.
getSystemRelease(URI) - Method in interface org.LexGrid.LexBIG.History.HistoryService
Return detailed information about the particular system release.
getSystemRelease(URI) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getSystemRelease(String, URI) - Static method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
getSystemRelease(URI) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getSystemRelease(String, URI) - Static method in class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
getSystemRelease(URI) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getSystemReleaseCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method getSystemReleaseCount.
getSystemReleaseDao() - Method in class org.lexevs.dao.database.access.DaoManager
 
getSystemReleaseDao() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getSystemReleaseDao() - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
getSystemReleaseDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the systemRelease daos.
getSystemReleaseForReleaseUid(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getSystemReleaseForReleaseUid(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getSystemReleaseForReleaseUri(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getSystemReleaseForReleaseUri(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getSystemReleaseIdByUri(String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
Gets the system release id by uri.
getSystemReleaseIdByUri(String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
getSystemReleaseMetadata(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
We are pre-processing the System Release Meta data to avoid having to load this at the end of the System Release load.
getSystemReleaseMetadataById(String) - Method in interface org.lexevs.dao.database.access.systemRelease.SystemReleaseDao
get system release entry for a given unique id.
getSystemReleaseMetadataById(String) - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
getSystemReleaseMetadataById(String) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
get system release entry for a given unique id.
getSystemReleaseMetadataById(String) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
 
getSystemReleaseMetadataByUri(String) - Method in interface org.lexevs.dao.database.access.systemRelease.SystemReleaseDao
get system release entry for a given uri.
getSystemReleaseMetadataByUri(String) - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
getSystemReleaseMetadataByUri(String) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
get system release entry for a given uri.
getSystemReleaseMetadataByUri(String) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
 
getSystemReleaseUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
Gets the system release id.
getSystemReleaseUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
Gets the system release id.
getSystemReleaseUIdByUri(String) - Method in interface org.lexevs.dao.database.access.systemRelease.SystemReleaseDao
get system release id by uri.
getSystemReleaseUIdByUri(String) - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
getSystemReleaseUidForDate(String, Date) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getSystemReleaseUidForDate(String, Date) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getSystemResourceService() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
 
getSystemResourceService() - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
getSystemResourceService() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getSystemResourceService() - Method in class org.lexevs.dao.index.access.IndexDaoManager
Gets the system resource service.
getSystemResourceService() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Gets the system resource service.
getSystemResourceService() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Gets the system resource service.
getSystemResourceService() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getSystemResourceService() - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
getSystemResourceService() - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
getSystemResourceService() - Method in class org.lexevs.locator.LexEvsServiceLocator
Gets the system resource service.
getSystemResourceService() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
 
getSystemVariables() - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getSystemVariables() - Method in class org.lexevs.cache.CacheConfigLocationFactory
 
getSystemVariables() - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
getSystemVariables() - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
getSystemVariables() - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
getSystemVariables() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getSystemVariables() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
 
getSystemVariables() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
getSystemVariables() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
getSystemVariables() - Method in class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
getSystemVariables() - Method in class org.lexevs.dao.index.factory.IndexerServiceFactory
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
getSystemVariables() - Method in class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
getSystemVariables() - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
getSystemVariables() - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
getSystemVariables() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the system variables.
getSystemVariables() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getSystemVariables() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the system variables.
getSystemVariables() - Method in interface org.lexevs.system.service.SystemResourceService
 
getTabbedContentPlugins() - Method in class org.LexGrid.LexBIG.gui.plugin.PluginRetriever
Returns the TabbedContent plugins.
getTableAlias() - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.QualifierSort
Gets the table alias.
getTableKeys() - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
Returns pre-defined statements
getTableMetadataDao() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
Gets the table metadata dao.
getTableName(String) - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Gets the table name.
getTableName(String) - Method in class org.lexevs.dao.database.connection.SQLInterface
Gets the table name.
getTableName(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
Gets the table name.
getTableName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
Gets the table name.
getTableName() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Gets the table name.
getTableName() - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Gets the table name.
getTableName(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
getTablePrefix() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getTablePrefix() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Return the table prefix that this SQL Interface is accessing.
getTablePrefix() - Method in class org.lexevs.dao.database.connection.SQLInterface
Return the table prefix that this SQL Interface is accessing.
getTablePrefix() - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
getTabName() - Method in interface org.LexGrid.LexBIG.gui.plugin.TabbedContent
Returns the name of the tab.
getTag() - Method in class org.lexevs.registry.model.RegistryEntry
Gets the tag.
getTag(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the tag.
getTag(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method getTag.
getTag() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method getTag.Returns the contents of the collection in an Array.
getTag() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
Returns the value of field 'tag'.
getTagCount() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method getTagCount.
getTaggedEntries(List<RegistryEntry>, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the tagged entries.
getTailColumn() - Method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Gets the tail column.
getTailConceptReferences(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the tail concept references.
getTailConceptReferences(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTailNodes(String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTailNodes(String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, LexEvsDatabaseOperations.TraverseAssociations, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTails(String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<String>, List<String>, SortOptionList, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
getTarget() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseMapRecord
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
getTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
getTarget(T) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
getTarget(MethodInvocation) - Method in class org.lexevs.cache.MethodCachingInterceptor
 
getTarget(ProceedingJoinPoint) - Method in class org.lexevs.cache.MethodCachingProxy
 
getTarget() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getTarget(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaRelationResolver
 
getTarget(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getTarget(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the target.
getTarget(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getTarget(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.MinimalRrfRelationResolver
 
getTarget(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.AuiBasedRelationResolver
 
getTarget(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
getTarget(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
 
getTarget() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the target.
getTarget(int) - Method in class org.LexGrid.relations.AssociationSource
Method getTarget.
getTarget() - Method in class org.LexGrid.relations.AssociationSource
Method getTarget.Returns the contents of the collection in an Array.
getTargetAsReference() - Method in class org.LexGrid.relations.AssociationSource
Method getTargetAsReference.Returns a reference to '_targetList'.
getTargetAssociation(GAssociationInfo) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getTargetAssociations() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getTargetAssociations(SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
getTargetCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
getTargetCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getTargetCode() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getTargetCodesResolvedConceptReferencesIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getTargetCodeSystemId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getTargetCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Gets the target coding scheme.
getTargetCodingScheme() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'targetCodingScheme'.
getTargetCodingSchemeName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Gets the target coding scheme name.
getTargetCodingSchemeUid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getTargetCodingSchemeVersion() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'targetCodingSchemeVersion'.
getTargetColumnName(LexEvsTreeDao.Direction) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Gets the target column name.
getTargetColumnName(LexEvsTreeDao.Direction) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Gets the target column name.
getTargetConceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getTargetConceptReferences() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
getTargetConceptSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
getTargetCount() - Method in class org.LexGrid.relations.AssociationSource
Method getTargetCount.
getTargetData(int) - Method in class org.LexGrid.relations.AssociationSource
Method getTargetData.
getTargetData() - Method in class org.LexGrid.relations.AssociationSource
Method getTargetData.Returns the contents of the collection in an Array.
getTargetDataAsReference() - Method in class org.LexGrid.relations.AssociationSource
Method getTargetDataAsReference.Returns a reference to '_targetDataList'.
getTargetDataCount() - Method in class org.LexGrid.relations.AssociationSource
Method getTargetDataCount.
getTargetDescription() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getTargetEntityCode() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the target entity code.
getTargetEntityCode() - Method in class org.lexevs.dao.database.access.association.model.Triple
 
getTargetEntityCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Gets the target entity code.
getTargetEntityCode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the target entity code.
getTargetEntityCode() - Method in class org.LexGrid.relations.AssociationTarget
Returns the value of field 'targetEntityCode'.
getTargetEntityCodeNamespace() - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Gets the target entity code namespace.
getTargetEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Gets the target entity code namespace.
getTargetEntityCodeNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Gets the target entity code namespace.
getTargetEntityCodeNamespace() - Method in class org.LexGrid.relations.AssociationTarget
Returns the value of field 'targetEntityCodeNamespace'.
getTargetEntityNamespace() - Method in class org.lexevs.dao.database.access.association.model.Triple
 
getTargetId(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
 
getTargetId(T) - Method in interface org.lexgrid.loader.processor.support.PropertyLinkResolver
Gets the target id.
getTargetName() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
getTargetNamespace() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
getTargetNamespace(T) - Method in interface org.lexgrid.loader.processor.support.MultipleRelationsRelationResolver
 
getTargetNamespace(T) - Method in interface org.lexgrid.loader.processor.support.RelationResolver
Gets the target namespace.
getTargetNamespace(Mrrel) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
 
getTargetNamespace(Mrrel) - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
getTargetNamespace() - Method in class org.lexgrid.loader.wrappers.RelationHolder
Gets the target namespace.
getTargetNodesForSource(String, String, String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTargetNodesForSource(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTargetOf() - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Returns the value of field 'targetOf'.
getTargetPrefix() - Method in class org.lexevs.dao.database.ibatis.parameter.SourceAndTargetMappingPrefixedParameter
 
getTargetProperty() - Method in class org.LexGrid.concepts.PropertyLink
Returns the value of field 'targetProperty'.
getTargetPropertyIdResolver() - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
getTargetPropertyIdResolver() - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
getTargetPropertyUId() - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Gets the target property id.
getTargetResolvedIteratorConceptReferences() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
getTargetSchemePrefix() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
getTargetSchemeUri() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getTargetSchemeVersion() - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
getTargetsFromSource(String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getTargetsFromSource(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTargetToSource() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'targetToSource'.
getTerm_addition_version() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getTerm_addition_version() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_category() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getTerm_code() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_last_modified_version() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_level() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_name() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getTerm_scope() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_status() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerm_type() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
getTerm_weight() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
getTerminologyServiceDesignationForUri() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
getTerminologyServiceObjectType(String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
getTerminologyServiceObjectType(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getTerminologyServiceObjectType(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
getTerminologyServiceObjectType(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
 
getTermPrefix() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
getTerms() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
getTermsAndConditions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
Return the license agreement.
getTestID() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
getTestID() - Method in class org.lexevs.dao.database.service.listener.DuplicatePropertyIdListenerTest
 
getTestID() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
getTestID() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexCapabilitiesTest
 
getTestID() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexQueryTest
 
getTestID() - Method in class org.LexGrid.LexBIG.admin.TestAdminUtilDisplayAndLog
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.ResourceManagerTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocIteratoSerializationTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImplTest
 
getTestID() - Method in class org.LexGrid.LexBIG.Utility.ServiceUtilityTest
 
getText() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
getText() - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
getTextBox(String) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getTextBoxContent(String) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
getTextQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
getTextQuery() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingProperties
 
getTextWeight(String, List<String>) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Return a relative weight between 0 and 1 that indicates how well the given string maps to a set of words.
getTfr() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getTime() - Method in class org.LexGrid.util.SimpleMemUsageReporter.Snapshot
 
getTimeDelta(SimpleMemUsageReporter.Snapshot) - Method in class org.LexGrid.util.SimpleMemUsageReporter.Snapshot
 
getTitle() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getTitle() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getToAdd() - Method in class org.LexGrid.LexOnt.CsmfLocalName
Returns the value of field 'toAdd'.
getToexpr() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getToid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getTokensWithoutSpecialCharacters(String[]) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
Gets the tokens without special characters.
getTokensWithSpecialCharacters(String[]) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractLiteralSearch
Gets the tokens with special characters.
getToNodeListCodes() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfFormalName
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfText
Returns the value of field 'toOverride'.
getToOverride() - Method in class org.LexGrid.LexOnt.CsmfVersion
Returns the value of field 'toOverride'.
getTores() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getTorule() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getTosid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getTotalEntityCount() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetEntityResolver
 
getTotype() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
getToUpdate() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Returns the value of field 'toUpdate'.
getToUpdate() - Method in class org.LexGrid.LexOnt.CsmfMappings
Returns the value of field 'toUpdate'.
getToUpdate() - Method in class org.LexGrid.LexOnt.CsmfSource
Returns the value of field 'toUpdate'.
getTransactionIsolation() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getTransactionManager() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getTransactionManager() - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
Gets the transaction manager.
getTransformer() - Method in class org.lexevs.tree.dao.pathtoroot.LexEvsPathToRootResolver
Deprecated.
Gets the transformer.
getTransformer() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot.LexEvsPathToRootResolver
Gets the transformer.
getTransitiveAssociationPredicateIds(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getTransitiveAssociationPredicateIds() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
getTransitiveClosure() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'transitiveClosure'.
getTransitiveInverseAssociatinNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'transitiveInverseAssociatinNames'.
getTransitiveInverseAssociationNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getTransitiveNormalAssociationNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
getTransitiveNormalAssociationNames() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'transitiveNormalAssociationNames'.
getTransitiveTableCount(String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTransitiveTableCount(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTransitiveTableCount(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
getTransitivity() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
getTransitivityBuilder() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getTree(String, CodingSchemeVersionOrTag, String, String, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getTree(String, CodingSchemeVersionOrTag, String, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getTree(String, CodingSchemeVersionOrTag, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
getTree(String, CodingSchemeVersionOrTag, String, String, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the tree.
getTree(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the tree.
getTree(String, CodingSchemeVersionOrTag, String) - Method in interface org.lexevs.tree.service.TreeService
Deprecated.
Gets the tree.
GetTree - Class in org.LexGrid.LexBIG.example
 
GetTree() - Constructor for class org.LexGrid.LexBIG.example.GetTree
 
getTree() - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
getTree(String, CodingSchemeVersionOrTag, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getTree(String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getTree(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
getTree(String, CodingSchemeVersionOrTag, String, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the tree.
getTree(String, CodingSchemeVersionOrTag, String, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the tree.
getTree(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeService
Gets the tree.
getTreeNodesForLevel(AssociationList, Map<String, LexEvsTreeNode>) - Method in class org.lexevs.tree.transform.AssociationListToTreeNodeList
Deprecated.
Gets the tree nodes for level.
getTreeNodesForLevel(AssociationList, Map<String, LexEvsTreeNode>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.transform.AssociationListToTreeNodeList
Gets the tree nodes for level.
getTreeService(LexBIGService) - Method in class org.lexevs.tree.service.TreeServiceFactory
Deprecated.
Gets the tree service.
getTreeService(LexBIGService) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeServiceFactory
Gets the tree service.
getTreeServiceExtension(LexBIGService) - Method in class org.lexevs.tree.service.TreeServiceFactory
Deprecated.
Gets the tree service extension.
getTreeServiceExtension(LexBIGService) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeServiceFactory
Gets the tree service extension.
getTreeServiceSpringBean() - Method in class org.lexevs.tree.service.TreeServiceFactory
Deprecated.
Gets the tree service spring bean.
getTreeServiceSpringBean() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeServiceFactory
Gets the tree service spring bean.
getTriple() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDaoTest
 
getTripleByUid(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
getTripleByUid(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
getTripleByUid(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getTripleByUid(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getTripleNode() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
getTriples(String, String, String, int, int) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder.TripleIterator
 
getTriplesForMappingRelationsContainer(String, String, String, String, List<String>) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTriplesForMappingRelationsContainer(String, String, String, String, List<String>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTriplesForMappingRelationsContainerAndCodesCount(String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTriplesForMappingRelationsContainerAndCodesCount(String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTriplesForMappingRelationsContainerCount(String, String) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTriplesForMappingRelationsContainerCount(String, String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.model.TripleUidReferencingResolvedConceptReference
 
getTripleUidIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
getTripleUidIteratorNode(AssociationListBuilder.AssociationDirection) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.AssociatedConceptIterator
Gets the triple uid iterator node.
getTripleUidsContainingObject(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsContainingObject(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsContainingObject(String, String, String, String, String, String, GraphQuery, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the triple uids containing object.
getTripleUidsContainingObject(String, String, String, String, String, String, GraphQuery, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsContainingObjectCount(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsContainingObjectCount(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsContainingObjectCount(String, String, String, String, String, GraphQuery) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the triple uids containing object count.
getTripleUidsContainingObjectCount(String, String, String, String, String, GraphQuery) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsContainingSubject(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsContainingSubject(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsContainingSubject(String, String, String, String, String, String, GraphQuery, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the triple uids containing subject.
getTripleUidsContainingSubject(String, String, String, String, String, String, GraphQuery, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsContainingSubjectCount(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsContainingSubjectCount(String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, Boolean) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsContainingSubjectCount(String, String, String, String, String, GraphQuery) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the triple uids containing subject count.
getTripleUidsContainingSubjectCount(String, String, String, String, String, GraphQuery) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsForMappingRelationsContainer(String, String, String, String, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainer(String, String, String, String, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainer(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
Gets the triple uids for mapping relations container.
getTripleUidsForMappingRelationsContainer(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsForMappingRelationsContainerAndCodes(String, String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainerAndCodes(String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainerAndCodes(String, String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainerAndCodes(String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
getTripleUidsForMappingRelationsContainerForCodes(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>, List<CodedNodeGraphService.Sort>, int, int) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getTripleUidsForMappingRelationsContainerForCodes(String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
 
getTripleUidsForMappingRelationsContainerForCodes(String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTripleUidsForMappingRelationsContainerForCodes(String, String, AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>, List<CodedNodeGraphService.Sort>, int, int) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
getTruncator() - Method in class org.lexgrid.loader.writer.decorator.FieldTruncatingWriterDecorator
Gets the truncator.
getTs() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getTty() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
getTty() - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
getTtyl() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getTui() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
getType() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptProperty
 
getType() - Method in class org.lexgrid.exporter.owlrdf.StringHelper
 
getType(Object) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns the class name for the given object to insert into printed representations.
getType(Object) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns the class name for the given object to insert into printed representations.
getType() - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
getTypeList() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToEntityTypes
 
getTypeMap() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getTypeName() - Method in class edu.mayo.informatics.resourcereader.core.IF.ResourceType
 
getTypeName() - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
getUId() - Method in class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Gets the id.
getUMLSRoot_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
getUnfilteredNodes(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getUniqueErrorId() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
getUniqueErrorId() - Method in interface org.lexevs.dao.database.service.error.DatabaseError
Gets the unique error id.
getUniqueErrorId() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Gets the unique error id.
getUnresolvedDetails() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
Gets the unresolved details.
getUpdateCount() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getUpdateDate() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
getUpdatedCodingScheme() - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Gets the updated coding scheme.
getUpdateStatementSQL(String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
Returns a specific statement based on a key
getUri() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
getUri() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getUri() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getUri(T) - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the uri.
getUri() - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
getUri() - Method in class org.LexGrid.naming.URIMap
Returns the value of field 'uri'.
getURIForAssociationName(Mappings, String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the URI that corresponds to the supplied association name.
getUriForCodingSchemeName(String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
 
getURIForCodingSchemeName(Mappings, String) - Static method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the URI that corresponds to the supplied coding scheme name.
getUriForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getUriForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
getUriForUserCodingSchemeName(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
getUriForUserCodingSchemeName(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Gets the uri for user coding scheme name.
getURIFromPath(String) - Static method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
getURIFromVSHeirarchyNode(VSHierarchyNode) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getURIHelp() - Static method in class org.LexGrid.LexBIG.admin.Util
Returns common text to append to displayed help for commands that accept URI parameters (e.g. how to deal with imbedded spaces).
getURIHelp() - Static method in class org.lexgrid.valuesets.admin.Util
Returns common text to append to displayed help for commands that accept URI parameters (e.g. how to deal with imbedded spaces).
getURIHelp() - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Returns common text to append to displayed help for commands that accept URI parameters (e.g. how to deal with imbedded spaces).
getUriMap(String, String, Class<T>) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Gets the uri map.
getUriMap(String, String, Class<T>) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
getUriMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Gets the uri map.
getUriMap(String, String, Class<T>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
getURIMap(CodingScheme, Class<T>, String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
getURIMap(Mappings, Class<T>, String) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
getURIOption(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getURIOption(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the uRI option.
getURIOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getUriOptions() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
getURIOptions() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Gets the uRI options.
getUrisForCodingSchemeName(String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Gets the uri for coding scheme name.
getURIToValueSetDefinitionsMap() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getURIToValueSetDefinitionsMap() - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
getUrlAppendString() - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
getUrn() - Method in class edu.mayo.informatics.lexgrid.convert.utility.URNVersionPair
 
getURNForAssociationName(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Get a the urn (registered name) for an association label used in the relationship tables.
getURNForAssociationName(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Get a the urn (registered name) for an association label used in the relationship tables.
getURNForExternalCodingSchemeName(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the uRN for external coding scheme name.
getURNForExternalCodingSchemeName(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getURNForInternalCodingSchemeName(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Get the urn (registered name) for a code systems internal coding scheme name.
getURNForInternalCodingSchemeName(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the uRN for internal coding scheme name.
getURNForInternalCodingSchemeName(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
getURNForInternalCodingSchemeName(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Get the urn (registered name) for a code systems internal coding scheme name.
getURNForRelationshipCodingSchemeName(String, String, String, boolean) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Get a the urn (registered name) for a coding scheme label used in the relationship tables.
getURNForRelationshipCodingSchemeName(String, String, String, boolean) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Get a the urn (registered name) for a coding scheme label used in the relationship tables.
getUrnVersionPairs() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
getUsageAssociationQualifier() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
getUsageContext(int) - Method in class org.LexGrid.commonTypes.Property
Method getUsageContext.
getUsageContext() - Method in class org.LexGrid.commonTypes.Property
Method getUsageContext.Returns the contents of the collection in an Array.
getUsageContext(int) - Method in class org.LexGrid.relations.AssociatableElement
Method getUsageContext.
getUsageContext() - Method in class org.LexGrid.relations.AssociatableElement
Method getUsageContext.Returns the contents of the collection in an Array.
getUsageContextAsReference() - Method in class org.LexGrid.commonTypes.Property
Method getUsageContextAsReference.Returns a reference to '_usageContextList'.
getUsageContextAsReference() - Method in class org.LexGrid.relations.AssociatableElement
Method getUsageContextAsReference.Returns a reference to '_usageContextList'.
getUsageContextCodedNodeSet(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
getUsageContextCodedNodeSet(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Returns coded node set for usage context entities.
getUsageContextCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
getUsageContextCodingScheme(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Gets the Usage Context coding scheme.
getUsageContextCodingSchemeSummary(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
getUsageContextCodingSchemeSummary(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Gets the Usage Context coding scheme summary.
getUsageContextCount() - Method in class org.LexGrid.commonTypes.Property
Method getUsageContextCount.
getUsageContextCount() - Method in class org.LexGrid.relations.AssociatableElement
Method getUsageContextCount.
getUsageContextEntitisWithName(String, String, CodingSchemeVersionOrTag, CodedNodeSet.SearchDesignationOption, String, String) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
getUsageContextEntitisWithName(String, String, CodingSchemeVersionOrTag, CodedNodeSet.SearchDesignationOption, String, String) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Returns list of usage context entities matching the name provided.
getUsageContextEntity(String, String, String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
getUsageContextEntity(String, String, String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Returns UsageContext entity object with usageContextId.
getUserMetaData() - Method in class org.LexGrid.LexBIG.gui.CodeSystemUserMetaData
 
getUsername() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
getUsername() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
getVal1(T) - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the val1.
getVal2(T) - Method in interface org.lexgrid.loader.processor.support.SupportedAttribResolver
Gets the val2.
getValidationProcessor() - Method in class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
Gets the validation processor.
getValidationQuery() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
Gets the validation query.
getValidator() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getValidator.
getValidator() - Method in class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
Gets the validator.
getValidator() - Method in class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
Gets the validator.
getValidator() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getValidator.
getValidator() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getValidator.
getValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
getValue() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
Get the value produced by the worker thread, or null if it hasn't been constructed yet.
getValue() - Method in class org.lexevs.dao.database.access.association.model.InstanceToGuid
 
getValue() - Method in class org.LexGrid.commonTypes.Property
Returns the value of field 'value'.
getValue() - Method in class org.LexGrid.commonTypes.PropertyQualifier
Returns the value of field 'value'.
getValue() - Method in class org.lexgrid.exporter.owlrdf.StringHelper
 
getValue() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Returns the value of field 'value'.
getValue(Mrconso) - Method in class org.lexgrid.loader.meta.staging.processor.AuiToCuiProcessor
 
getValue() - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
getValue(String) - Method in class org.lexgrid.loader.staging.dao.KeyValueDao
Gets the value.
getValue(I) - Method in class org.lexgrid.loader.staging.processor.AbstractKeyValueProcessor
Gets the value.
getValue() - Method in class org.lexgrid.loader.staging.support.KeyValuePair
Gets the value.
getValueSetDefEntryStateUId(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetDefEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinition() - Method in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
getValueSetDefinition() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
Gets the value Set Definition.
getValueSetDefinition(Entity) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
getValueSetDefinition(URI, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinition(URI, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns value set definition for supplied value set definition URI.
getValueSetDefinition(int) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method getValueSetDefinition.
getValueSetDefinition() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method getValueSetDefinition.Returns the contents of the collection in an Array.
getValueSetDefinitionAsReference() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method getValueSetDefinitionAsReference.Returns a reference to '_valueSetDefinitionList'.
getValueSetDefinitionByDate(String, Date) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Gets the value set definition by date.
getValueSetDefinitionByDate(String, Date) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionByRevision(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetDefinitionByRevision(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionByRevision(String, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Gets the value set definition by revision.
getValueSetDefinitionByRevision(String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionByURI(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Gets the value set definition by URI.
getValueSetDefinitionByURI(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionByUri(URI) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Gets the value set definition by uri.
getValueSetDefinitionByUri(URI) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionCompiler() - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
 
getValueSetDefinitionCount() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method getValueSetDefinitionCount.
getValueSetDefinitionDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getValueSetDefinitionDefRefForTopNodeSourceCode(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetDefinitionDefRefForTopNodeSourceCode(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionDefRefForTopNodeSourceCode(Node) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
 
getValueSetDefinitionDefRefForTopNodeSourceCode(Node) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionEntitiesForTerm(String, String, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionEntitiesForTerm(String, String, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolve the value set definition, restricting the matching values to entities the match the supplied term and match algorithm.
getValueSetDefinitionGuid() - Method in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
getValueSetDefinitionName() - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
getValueSetDefinitionName() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'valueSetDefinitionName'.
getValueSetDefinitionReference() - Method in class org.LexGrid.valueSets.DefinitionEntry
Returns the value of field 'valueSetDefinitionReference'.
getValueSetDefinitionRevisionId() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getValueSetDefinitionRevisionId() - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
getValueSetDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
getValueSetDefinitions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
getValueSetDefinitions() - Method in class org.LexGrid.versions.SystemRelease
Returns the value of field 'valueSetDefinitions'.
getValueSetDefinitionsByResgistryEntry() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
 
getValueSetDefinitionsByResgistryEntry() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionSchemeRefForTopNodeSourceCode(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetDefinitionSchemeRefForTopNodeSourceCode(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionSchemeRefForTopNodeSourceCode(Node) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
 
getValueSetDefinitionSchemeRefForTopNodeSourceCode(Node) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the value set definition service.
getValueSetDefinitionService() - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Gets the value set definition service.
getValueSetDefinitionService() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
getValueSetDefinitionURI() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getValueSetDefinitionURI() - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
getValueSetDefinitionURI() - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
getValueSetDefinitionURI() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Returns the value of field 'valueSetDefinitionURI'.
getValueSetDefinitionURI() - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
Returns the value of field 'valueSetDefinitionURI'.
getValueSetDefinitionURIForSupportedTagAndValue(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Returns all the value set definition URIs that contain supplied supported tag and value.
getValueSetDefinitionURIForSupportedTagAndValue(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionURIForSupportedTagAndValue(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Returns list of Value Set Definition URIs that contain supplied SupportedAttribute Tag and Value.
getValueSetDefinitionURIForSupportedTagAndValue(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionURIs() - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Gets the value set definition URIs.
getValueSetDefinitionURIs() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionURIsForName(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Return the URI's for the value set definition(s) for the supplied value set definition name.
getValueSetDefinitionURIsForName(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetDefinitionURISForName(String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Return all value set definition URIs that match the supplied key.
getValueSetDefinitionURISForName(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getValueSetDefinitionURIsForSupportedTagAndValue(String, String, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionURIsForSupportedTagAndValue(String, String, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of Value Set Definition URIs that contain supplied SupportedAttribute Tag and Value.
getValueSetDefinitionURIsWithCodingScheme(String, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionURIsWithCodingScheme(String, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of Value Set Definition URIs that references supplied coding scheme.
getValueSetDefinitionURIsWithConceptDomain(String, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionURIsWithConceptDomain(String, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of Value Set Definition URIs that are bound to supplied concept domain.
getValueSetDefinitionURIsWithConceptDomainAndUsageContext(String, List<String>, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionURIsWithConceptDomainAndUsageContext(String, List<String>, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of Value Set Definition URIs that are bound to supplied concept domain and in supplied usage context.
getValueSetDefinitionURIsWithUsageContext(List<String>, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getValueSetDefinitionURIsWithUsageContext(List<String>, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns list of Value Set Definition URIs that can be used with in the supplied list of usage context.
getValueSetDefReference() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getValueSetDefUId() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
getValueSetEntitiesForURI(String) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getValueSetEntitiesForURI(String) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a list of ResolvedConceptReference representations of the entities belonging to the CodingScheme representation of this value set identified by its uri designation as a String
getValueSetEntityCount(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns the total number of values in a given value set determined by the top node unique identifier which must be an exact match
getValueSetEntityCount(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getValueSetEntityDao(String, String) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getValueSetEntityDaos() - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
getValueSetEntityProperties(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns a list of entity properties useful in defining the meta data of a value set expressed as a coding scheme.
getValueSetEntityProperties(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getValueSetEntityUidForTopNodeEntityCode(String, String, String, int, int) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns all value set member unique identifiers defined in the database and only used as query options for other database calls.
getValueSetEntityUidForTopNodeEntityCode(String, String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getValueSetEntityUids(String, String, int, int) - Method in interface org.lexevs.dao.database.access.valuesets.SourceAssertedValueSetDao
Returns all value set unique identifiers defined in the database and only used as query options for other database calls This is a utility method for other methods.
getValueSetEntityUids(String, String, int, int) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
getvalueSetHierarchyDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getValueSetHierarchyService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
getValueSetHistoryXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getValueSetIteratorForURI(String) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
getValueSetIteratorForURI(String) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns an iterator over ResolvedConceptReference representations of the entities belonging to the CodingScheme representation of this value set identified by its uri designation as a String
getValueSetService() - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
getValueSetURIMapToDefinitions() - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetURIMapToDefinitions() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetURIsForContext(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
getValueSetURIsForContext(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getValueSetXmlDdl() - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
getValueToCheckForNull(I) - Method in class org.lexgrid.loader.processor.support.AbstractAssociationQualifierResolver
 
getValueToCheckForNull(T) - Method in class org.lexgrid.loader.processor.support.AbstractNullValueSkippingResolver
 
getValueToCheckForNull(I) - Method in class org.lexgrid.loader.processor.support.AbstractPropertyQualifierResolver
 
getVariableName() - Method in class org.lexevs.system.constants.IndividualVariableFactory
Gets the variable name.
getVcui() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getVend() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getVersion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
getVersion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextToSQL
 
getVersion() - Method in class edu.mayo.informatics.lexgrid.convert.utility.URNVersionPair
 
getVersion() - Method in interface org.lexevs.dao.database.access.tablemetadata.TableMetadataDao
Gets the version.
getVersion() - Method in class org.lexevs.dao.database.ibatis.tablemetadata.parameter.InsertTableMetadataBean
Gets the version.
getVersion() - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Gets the version.
getVersion() - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Gets the version.
getVersion() - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Gets the version.
getVersion() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getVersion() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
Returns the value of field 'version'.
getVersion() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Returns the value of field 'version'.
getVersion() - Method in interface org.LexGrid.LexBIG.Extensions.Extendable
Return version information about the extension.
getVersion() - Method in class org.LexGrid.LexBIG.gui.VersionProperties
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
getVersion() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Gets the version.
getVersion(String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Gets the version.
getVersion() - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
getVersion() - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
getVersion() - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
getVersion() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
getVersion() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
getVersion() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'version'.
getVersionableDaos() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
Gets the versionable daos.
getVersionDate() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'versionDate'.
getVersionForTag(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Gets the version for tag.
getVersionOrder() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'versionOrder'.
getVersionOrTag() - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Gets the version or tag.
getVersionOrTag() - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
getVersionOrTag() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Gets the version or tag.
getVersionsDao(String, String) - Method in class org.lexevs.dao.database.access.DaoManager
Gets the versions dao.
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Gets the versions dao.
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
Gets the versions dao.
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getVersionsDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
Gets the versions dao.
getVersionsDaos() - Method in class org.lexevs.dao.database.access.DaoManager
Gets the versions daos.
getVersionsForDateRange(String, String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
getVersionsForDateRange(String, String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
getVersionsForDateRange(Date, Date, String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
 
getVersionsForDateRange(Date, Date, String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
getVersionsForDateRange(Date, Date) - Method in interface org.LexGrid.LexBIG.History.HistoryService
 
getVersionsForDateRange(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
getVersionsForDateRange(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
getVersionsForDateRange(Date, Date) - Method in class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
 
getVersionStatus() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Returns the value of field 'versionStatus'.
getVersionTags() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Returns the value of field 'versionTags'.
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
getVmCombinedId() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
getVmSchemaVersion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
getVocabularyModel() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
getVsab() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getVSDefinitionEntryByUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
getVsDefinitionEntryDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getVsDefinitionEntryDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getVsDefinitionEntryService() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
Gets the vs definition entry service.
getVSEntityCountForTopNodeCode(String) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
getVSEntityCountForTopNodeCode(String) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
getVsEntryStateDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getVsEntryStateDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getVsEntryStateDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getVsEntryStateDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
getVsEntryStateDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
getVsEntryStateDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getVsExternalURIs() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
getVsMultiAttribList() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
getVsMultiAttribList() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
 
getVsMultiAttribList() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
 
getVsPLEntryGuid() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
getVsPropertyDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
getVsPropertyDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
getVsPropertyDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
getVsPropertyDao() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
getVsPropertyDaos() - Method in class org.lexevs.dao.database.access.DaoManager
 
getVsPropertyGuid() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.VSPropertyBean
 
getVsPropertyService() - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Gets the vs property service.
getVsPropertyService() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
Gets the vs property service.
getVsPropertyService() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
Gets the vs property service.
getVsPropertyService() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
Gets the vs property service.
getVstart() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
getVSURIsForContextURI(String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
 
getVSURIsForContextURI(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
getWarnings() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
getWarnings() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
getWarningsLogged() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'warningsLogged'.
getWithFMAURN(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
getWithOBOURN(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
getWrapAt() - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns the requested line wrap position set for the current thread.
getWrapAt() - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns the requested line wrap position set for the current thread.
getWriterName(Object) - Method in class org.lexgrid.loader.writer.classifier.WriterClassifier
Gets the writer name.
getXMLMetadataFilePath() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.HL7LoaderPreferences
Returns the value of field 'XMLMetadataFilePath'.
getXMLMetadataFilePath() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.LoaderPreferences
Returns the value of field 'XMLMetadataFilePath'.
getXMLMetadataFilePath() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.MetaLoaderPreferences
Returns the value of field 'XMLMetadataFilePath'.
getXMLName() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method getXMLName.
getXMLName() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method getXMLName.
getXmlns() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
getXmlRegistry() - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
Gets the xml registry.
getXmlRegistry() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Gets the xml registry.
getXmlRegistry() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Gets the xml registry.
GHolder - Class in org.LexGrid.LexBIG.Impl.helpers.graph
Class to help me get from the SQL database to the graph object.
GHolder(String, String, ConceptReference, boolean, boolean) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Constructs a new container to hold concept graph representations.
GNode - Class in org.LexGrid.LexBIG.Impl.helpers.graph
A concept code in my graph - helps me build the graph I need to return.
GNode(GNode) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
GNode(String, String, String, String[], String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
GNodeComparator - Class in org.LexGrid.LexBIG.Impl.helpers.graph
Deprecated.
GNodeComparator(SortOptionList) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.graph.GNodeComparator
Deprecated.
 
GNodeConceptCodeSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.GNodeConceptCodeSort
 
Graph - Class in org.LexGrid.LexBIG.gui.displayResults
Overriding the addEdge method of Graph to allow for multiple edges between nodes.
Graph(boolean) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.Graph
 
GraphDbTriple - Class in org.lexevs.dao.database.access.association.model.graphdb
 
GraphDbTriple() - Constructor for class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
graphFocus - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
graphItemSelected(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.displayResults.DisplayCodedNodeSet
 
graphItemSelected(ResolvedPickListEntry) - Method in class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
graphItemSelected(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
GraphLexEvsTreeDao - Class in org.lexevs.tree.dao
Deprecated.
GraphLexEvsTreeDao() - Constructor for class org.lexevs.tree.dao.GraphLexEvsTreeDao
Deprecated.
 
GraphLexEvsTreeDao - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
The Class JdbcLexEvsTreeDao.
GraphLexEvsTreeDao() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.GraphLexEvsTreeDao
 
GraphQuery - Class in org.lexevs.dao.database.service.codednodegraph.model
The Class GraphQuery.
GraphQuery() - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
 
GraphQuery.CodeNamespacePair - Class in org.lexevs.dao.database.service.codednodegraph.model
The Class CodeNamespacePair.
GraphQuery.QualifierNameValuePair - Class in org.lexevs.dao.database.service.codednodegraph.model
The Class QualifierNameValuePair.
GraphQueryBuilder - Interface in org.LexGrid.LexBIG.Impl.pagedgraph.query
The Interface GraphQueryBuilder.
GraphQuestionQuery - Class in org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model
Utility class that helps in putting together the query for graph builiding.
GraphQuestionQuery() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model.GraphQuestionQuery
 
GraphQuestionQuery - Class in org.LexGrid.LexBIG.Impl.helpers
Utility class that helps in putting together the query for graph builiding.
GraphQuestionQuery() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.GraphQuestionQuery
 
GraphRestrictionGUI - Class in org.LexGrid.LexBIG.gui.restrictions
Shell to let you add and edit restrictions.
GraphRestrictionGUI(LB_GUI, Restriction) - Constructor for class org.LexGrid.LexBIG.gui.restrictions.GraphRestrictionGUI
 
GraphView - Class in org.LexGrid.LexBIG.gui.displayResults
Viewer for graphs, based off of one of the prefuse layout examples.
GraphView(Composite, DisplayCodedNodeSet) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
GraphView.AutoPanAction - Class in org.LexGrid.LexBIG.gui.displayResults
 
GraphView.NodeColorAction - Class in org.LexGrid.LexBIG.gui.displayResults
 
GraphViewFilter - Class in org.LexGrid.LexBIG.gui.displayResults
Overrides behavior of the standard FisheyeTreeFilter to maintain visibility of all node connections.
GraphViewFilter(String, int, GraphView) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.GraphViewFilter
 
green - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
groupByCodingSchemeId(List<? extends CodingSchemeIdHolder<T>>) - Method in class org.lexgrid.loader.writer.AbstractCodingSchemeIdHolderWriter
 
groupByCodingSchemeId(List<? extends ParentIdHolder<T>>) - Method in class org.lexgrid.loader.writer.AbstractParentIdHolderWriter
 
groupByDescription(List<VSHierarchyNode>) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
GroupByLanguagePreferredSetter - Class in org.lexgrid.loader.data.property
The Class GroupByLanguagePreferredSetter.
GroupByLanguagePreferredSetter() - Constructor for class org.lexgrid.loader.data.property.GroupByLanguagePreferredSetter
 
GroupByLanguagePreferredSetterTest - Class in org.lexgrid.loader.data.property
The Class GroupByLanguagePreferredSetterTest.
GroupByLanguagePreferredSetterTest() - Constructor for class org.lexgrid.loader.data.property.GroupByLanguagePreferredSetterTest
 
GroupDiscriminator<T> - Interface in org.lexgrid.loader.reader.support
The Interface GroupDiscriminator.

H

handleNoCode(Mrconso) - Method in class org.lexgrid.loader.rrf.data.entity.AbstractMrconsoNoCodeHandler
 
handleNoCode(I) - Method in interface org.lexgrid.loader.rrf.data.entity.NoCodeHandler
Handle no code.
handleProtegeErrors(Collection) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
handleSingleTermQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
 
handleSingleTermQuery(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.NonLeadingWildcardLiteralSubStringSearch
 
handleWhiteSpaceCharacters(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Handle white space characters.
hasAlias(CodingSchemeAliasHolder, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Checks for alias.
hasChild(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
hashCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
hashCode() - Method in class org.lexevs.dao.database.access.association.model.DefinedNode
 
hashCode() - Method in class org.lexevs.dao.database.access.association.model.Node
 
hashCode() - Method in class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Sort
 
hashCode() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
 
hashCode() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
 
hashCode() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
hashCode() - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry.CodingSchemeUriVersionPair
 
hashCode() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
hashCode() - Method in class org.lexevs.registry.model.Registry
 
hashCode() - Method in class org.lexevs.registry.model.RegistryEntry
 
hashCode() - Method in class org.lexevs.system.utility.CodingSchemeReference
 
hashCode() - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
hashCode() - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
hashCode() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
hashCode() - Method in class org.LexGrid.LexBIG.Impl.loaders.helpers.CategoryNameValue
 
hashCode() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
hashCode() - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
hashCode() - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
hashCode() - Method in class org.lexgrid.loader.wrappers.Pair
 
hashCode() - Method in class org.lexgrid.loader.wrappers.RelationHolder
 
hashCode() - Method in class org.lexgrid.loader.wrappers.Triple
 
hasHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String[], boolean, String, String[], NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an indication of whether a path exists between the given concept and the set of root concepts for the given associations in the given direction.
hasHierarchyPathToRoot(String, CodingSchemeVersionOrTag, String[], boolean, String, String, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an indication of whether a path exists between the given concept and root for the given associations in the given direction.
hasHierarchyPathToRootMultiAxis(String, CodingSchemeVersionOrTag, String[], boolean, String, String, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an indication of whether a path exists between the given concept and root for the given associations in the given direction.
hasHierarchyPathToRootSingleAxis(String, CodingSchemeVersionOrTag, String, boolean, String, String, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Returns an indication of whether a path exists between the given concept and root for the given associations in the given direction.
hashTableToString(Hashtable, String[]) - Static method in class org.LexGrid.util.Utility
This method is for printing out a hashtable (keys and values).
hashTableToString(Hashtable) - Static method in class org.LexGrid.util.Utility
This method is for printing out a hashtable (keys and values).
hasNext() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
hasNext() - Method in class org.lexevs.paging.AbstractPageableIterator
 
hasNext() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
 
hasNext() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Indicates if more items are available through next() operations.
hasNext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
hasNext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
 
hasNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
hasNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorAdapter
 
hasNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
hasNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
hasNext() - Method in interface org.LexGrid.LexBIG.Utility.Iterators.EntityListIterator
True means that there still values that can be returned.
HavingProperties - Class in org.LexGrid.LexBIG.gui.restrictions
Class to hold restrictToHavingProperties types of restrictions.
HavingProperties() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
HCD_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
HcdQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class HcdQualifierResolver.
HcdQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.HcdQualifierResolver
 
helper(SQLInterface, GHolder, ArrayList<Operation>, boolean, String, String, int, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
This returns a list of ConceptReferences that are found to be new - or unqueried.
HibernateRegistryDao - Class in org.lexevs.dao.database.hibernate.registry
The Class HibernateRegistryDao.
HibernateRegistryDao() - Constructor for class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
HibernateRegistryDaoTest - Class in org.lexevs.dao.database.hibernate.registry
The Class HibernateRegistryDaoTest.
HibernateRegistryDaoTest() - Constructor for class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDaoTest
 
HIERARCHY - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
HIERARCHY_DEFAULT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
HIERARCHY_DEFAULT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
HIERARCHY_DEFAULT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
HIERARCHY_DEFAULT_ROOT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
HIERARCHY_DEFAULT_ROOT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
HIERARCHY_DEFAULT_ROOT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
HIERARCHY_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
HierarchyCheckingPostProcessor - Class in org.LexGrid.LexBIG.Impl.loaders.postprocessor
The Class HierarchyCheckingPostProcessor.
HierarchyCheckingPostProcessor() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
 
HierarchyPathResolveOption - Class in org.LexGrid.LexBIG.DataModel.enums
Implementation of a path to root resolve option
HierarchyPathResolveOption() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.HierarchyPathResolveOption
 
HierarchyPathResolveOptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.enums.descriptors
Class HierarchyPathResolveOptionDescriptor.
HierarchyPathResolveOptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
 
HierarchyResolver - Interface in org.lexevs.tree.dao.hierarchy
Deprecated.
HierarchyResolver - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy
The Interface HierarchyResolver.
HierarchyRootsTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
The Class HierarchyRootsTestIT.
HierarchyRootsTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.HierarchyRootsTestIT
 
HighestRankingListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class HighestRankingListProcessor.
HighestRankingListProcessor() - Constructor for class org.lexgrid.loader.processor.HighestRankingListProcessor
 
HighestRankingListProcessorTest - Class in org.lexgrid.loader.processor
The Class HighestRankingListProcessorTest.
HighestRankingListProcessorTest() - Constructor for class org.lexgrid.loader.processor.HighestRankingListProcessorTest
 
HistoryEntry() - Constructor for class org.lexevs.registry.service.XmlRegistry.HistoryEntry
 
HistoryLoadDBUtil - Class in edu.mayo.informatics.lexgrid.convert.directConversions
 
HistoryLoadDBUtil(Connection, String, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
Constructor
historyPrefix - Static variable in interface org.lexevs.dao.database.prefix.PrefixResolver
 
HistorySearch - Class in org.LexGrid.LexBIG.gui.history
Class for searching and viewing history information.
HistorySearch(Shell, HistoryService, String) - Constructor for class org.LexGrid.LexBIG.gui.history.HistorySearch
 
HistoryService - Interface in org.LexGrid.LexBIG.History
The history service returns information about the change history of a coding scheme.
HistoryServiceFactory - Class in org.LexGrid.LexBIG.Impl.History
 
HistoryServiceFactory() - Constructor for class org.LexGrid.LexBIG.Impl.History.HistoryServiceFactory
 
HistoryTableReplicatingListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving historyTableReplicating events.
HistoryTableReplicatingListener() - Constructor for class org.lexevs.dao.database.service.listener.HistoryTableReplicatingListener
 
HistoryTests - Class in org.LexGrid.LexBIG.Impl.test
Random test code used during the developement process.
HistoryTests() - Constructor for class org.LexGrid.LexBIG.Impl.test.HistoryTests
 
HL72LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
HL7 default values as implied in the mapping.
HL72LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
HL72LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
Wrapper class that kicks off the main functionality of the loading class
HL72LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGMain
 
HL7_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Known issues are listed in tracker item #10516 at http://gforge.nci.nih.gov/tracker/index.php?
HL7_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
HL7AssocContainer - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
Association data container
HL7ConceptContainer - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
Concept data container
HL7ConceptContainer(String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
HL7ConceptList - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
Hash for concepts
HL7LoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
This loader loads a series of coding schemes to a LexBIG service according to a mapping of HL7 RIM database elements to LexBIG/LexGrid.
HL7LoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
HL7LoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences
Class HL7LoaderPreferences.
HL7LoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.HL7LoaderPreferences
 
HL7LoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors
Class HL7LoaderPreferencesDescriptor.
HL7LoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
 
HL7MapToLexGrid - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
This is the Main EMF conversion driver.
HL7MapToLexGrid(String, String, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGrid
 
HL7MapToLexGridTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7
 
HL7MapToLexGridTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGridTest
 
HL7MetaDataSearchTest - Class in org.LexGrid.LexBIG.Impl.test
Example test class to demonstrate searching the HL7 Metadata .
HL7MetaDataSearchTest() - Constructor for class org.LexGrid.LexBIG.Impl.test.HL7MetaDataSearchTest
 
HL7OID_ID_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
HL7PreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load HL7 loader preferences from an XML file
HL7PreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.HL7PreferenceLoader
Constructor for creating an HL7PreferenceLoader.
HL7PreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.HL7PreferenceLoader
Constructor for creating an HL7PreferenceLoader.
HL7RIMLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading HL7 RIM into LexBIG.
HL7RIMLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.HL7RIMLoader
 
HL7SQL - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
SQL default elements for MSACCESS
HL7SQL(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
HL7SQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
host - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
HOSTED_BY - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
HTTP - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
hydrate() - Method in class org.lexevs.dao.database.lazyload.AbstractLazyLoadable
Hydrate.
hydrate() - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Hydrate.
hydrate() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Hydrate.
hydrate() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Hydrate.
hydrateIfNeeded() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractNonProxyLazyCodeToReturn
Hydrate if needed.

I

IbatisAssociationDao - Class in org.lexevs.dao.database.ibatis.association
The Class IbatisAssociationDao.
IbatisAssociationDao() - Constructor for class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
IbatisAssociationDaoTest - Class in org.lexevs.dao.database.ibatis.association
The Class IbatisAssociationDaoTest.
IbatisAssociationDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
IbatisAssociationDataDao - Class in org.lexevs.dao.database.ibatis.association
 
IbatisAssociationDataDao() - Constructor for class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
IbatisAssociationTargetDao - Class in org.lexevs.dao.database.ibatis.association
 
IbatisAssociationTargetDao() - Constructor for class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
IbatisAssociationTargetDaoTest - Class in org.lexevs.dao.database.ibatis.association
The Class IbatisAssociationDaoTest.
IbatisAssociationTargetDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDaoTest
 
IbatisCodedNodeGraphDao - Class in org.lexevs.dao.database.ibatis.codednodegraph
 
IbatisCodedNodeGraphDao() - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
IbatisCodedNodeGraphDao.MappingTripleParameterBean - Class in org.lexevs.dao.database.ibatis.codednodegraph
 
IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean - Class in org.lexevs.dao.database.ibatis.codednodegraph
 
IbatisCodedNodeGraphDaoTest - Class in org.lexevs.dao.database.ibatis.codednodegraph
The Class IbatisAssociationDaoTest.
IbatisCodedNodeGraphDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
IbatisCodingSchemeDao - Class in org.lexevs.dao.database.ibatis.codingscheme
The Class IbatisCodingSchemeDao.
IbatisCodingSchemeDao() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
IbatisCodingSchemeDaoHistoryTest - Class in org.lexevs.dao.database.ibatis.codingscheme
The Class IbatisCodingSchemeDaoTest.
IbatisCodingSchemeDaoHistoryTest() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
IbatisCodingSchemeDaoTest - Class in org.lexevs.dao.database.ibatis.codingscheme
The Class IbatisCodingSchemeDaoTest.
IbatisCodingSchemeDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
IbatisEntityDao - Class in org.lexevs.dao.database.ibatis.entity
The Class IbatisEntityDao.
IbatisEntityDao() - Constructor for class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
IbatisEntityDaoTest - Class in org.lexevs.dao.database.ibatis.entity
The Class IbatisEntityDaoTest.
IbatisEntityDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
IbatisNciHistoryDao - Class in org.lexevs.dao.database.ibatis.ncihistory
 
IbatisNciHistoryDao() - Constructor for class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
IbatisNciHistoryDaoTest - Class in org.lexevs.dao.database.ibatis.ncihistory
The Class IbatisEntityDaoTest.
IbatisNciHistoryDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
IbatisPickListDao - Class in org.lexevs.dao.database.ibatis.valuesets
The Class IbatisPickListDao.
IbatisPickListDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
IbatisPickListEntryNodeDao - Class in org.lexevs.dao.database.ibatis.valuesets
 
IbatisPickListEntryNodeDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
IbatisPropertyDao - Class in org.lexevs.dao.database.ibatis.property
The Class IbatisPropertyDao.
IbatisPropertyDao() - Constructor for class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
IbatisPropertyDaoTest - Class in org.lexevs.dao.database.ibatis.property
The Class IbatisPropertyDaoTest.
IbatisPropertyDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
IbatisRevisionDao - Class in org.lexevs.dao.database.ibatis.revision
 
IbatisRevisionDao() - Constructor for class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
IbatisRevisionDaoTest - Class in org.lexevs.dao.database.ibatis.revision
The Class IbatisPropertyDaoTest.
IbatisRevisionDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDaoTest
 
IbatisSourceAssertedValueSetDao - Class in org.lexevs.dao.database.ibatis.valuesets
 
IbatisSourceAssertedValueSetDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
IbatisSourceAssertedValueSetDaoTest - Class in org.lexevs.dao.database.ibatis.valuesets
 
IbatisSourceAssertedValueSetDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
IbatisSystemReleaseDao - Class in org.lexevs.dao.database.ibatis.systemRelease
 
IbatisSystemReleaseDao() - Constructor for class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
IbatisValueSetDefinitionDao - Class in org.lexevs.dao.database.ibatis.valuesets
The Class IbatisValueSetDefinitionDao.
IbatisValueSetDefinitionDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
IbatisValueSetHierarchyDao - Class in org.lexevs.dao.database.ibatis.valuesets
 
IbatisValueSetHierarchyDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetHierarchyDao
 
IbatisVersionsDao - Class in org.lexevs.dao.database.ibatis.versions
The Class IbatisVersionsDao.
IbatisVersionsDao() - Constructor for class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
IbatisVersionsDaoTest - Class in org.lexevs.dao.database.ibatis.versions
The Class IbatisVersionsDaoTest.
IbatisVersionsDaoTest() - Constructor for class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDaoTest
 
IbatisVSDefinitionEntryDao - Class in org.lexevs.dao.database.ibatis.valuesets
 
IbatisVSDefinitionEntryDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
IbatisVSEntryStateDao - Class in org.lexevs.dao.database.ibatis.valuesets
The Class IbatisVSEntryStateDao manages entrystate data to/fro database.
IbatisVSEntryStateDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
IbatisVSPropertyDao - Class in org.lexevs.dao.database.ibatis.valuesets
The Class IbatisVSPropertyDao.
IbatisVSPropertyDao() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
id - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
id - Variable in class org.lexevs.registry.model.RegistryEntry
The id.
id - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
id - Variable in class org.lexgrid.lexevs.ndfrt.data.BaseDef
 
ID - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
ID_AUTHORITY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
ID_UID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
IdableAssociationEntity - Class in org.lexevs.dao.database.ibatis.entity.model
 
IdableAssociationEntity() - Constructor for class org.lexevs.dao.database.ibatis.entity.model.IdableAssociationEntity
 
IdableEntity - Class in org.lexevs.dao.database.ibatis.entity.model
 
IdableEntity() - Constructor for class org.lexevs.dao.database.ibatis.entity.model.IdableEntity
 
IdableMrconso - Class in org.lexgrid.loader.rrf.staging.model
The Class IdableMrconso.
IdableMrconso() - Constructor for class org.lexgrid.loader.rrf.staging.model.IdableMrconso
 
IdableParameterBean - Class in org.lexevs.dao.database.ibatis.parameter
The Class IdableParameterBean.
IdableParameterBean() - Constructor for class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Instantiates a new idable parameter bean.
IdableParameterBean(String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Instantiates a new idable parameter bean.
idOrDataId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
IGNORED_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
IMPORTED_NS - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
IN_BRACKETS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
inCachePosition - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
The in cache position.
IncludeForDistributedTests - Interface in org.LexGrid.LexBIG.Utility
 
INCLUDES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
increaseSpace() - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
increaseSpace() - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
incrementByOne(char[]) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Increment by one.
index(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
index(AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.IndexOption) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, IndexCreator.IndexOption) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean, IndexCreator.IndexOption) - Method in interface org.lexevs.dao.index.indexer.IndexCreator
 
index(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
index(AbsoluteCodingSchemeVersionReference, IndexCreator.EntityIndexerProgressCallback, boolean, IndexCreator.IndexOption) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
Index - Class in org.lexevs.dao.indexer.lucene
This is an abstracted view of an lucene index.
Index(File) - Constructor for class org.lexevs.dao.indexer.lucene.Index
 
Index - Interface in org.LexGrid.LexBIG.Extensions.Index
Identifies expected behavior and an associated loader to build and maintain a named index.
IndexCreator - Interface in org.lexevs.dao.index.indexer
The Interface IndexCreator.
IndexCreator.EntityIndexerProgressCallback - Interface in org.lexevs.dao.index.indexer
 
IndexCreator.IndexOption - Enum in org.lexevs.dao.index.indexer
 
IndexDaoManager - Class in org.lexevs.dao.index.access
The Class IndexDaoManager.
IndexDaoManager() - Constructor for class org.lexevs.dao.index.access.IndexDaoManager
 
indexEntity(String, String, String, String, String, Entity) - Method in class org.lexevs.dao.index.indexer.AssertedValueSetEntityIndexer
 
indexEntity(String, String, Entity) - Method in interface org.lexevs.dao.index.indexer.EntityIndexer
 
indexEntity(String, String, Entity) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Index entity.
indexEntity(String, String, Entity, Property) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Index entity.
IndexerService - Class in org.lexevs.dao.indexer.api
This class will sit on top of multiple indexes, and manage them for you.
IndexerService(String, boolean) - Constructor for class org.lexevs.dao.indexer.api.IndexerService
Create an indexer service on a directory.
IndexerService(String) - Constructor for class org.lexevs.dao.indexer.api.IndexerService
Create an indexer service on a directory.
IndexerServiceFactory - Class in org.lexevs.dao.index.factory
A factory for creating IndexerService objects.
IndexerServiceFactory() - Constructor for class org.lexevs.dao.index.factory.IndexerServiceFactory
 
indexExternalResolvedValueSetsToAssertedValueSetIndex() - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
IndexingTasklet - Class in org.lexgrid.loader.lexbigadmin
The Class IndexingTasklet.
IndexingTasklet() - Constructor for class org.lexgrid.loader.lexbigadmin.IndexingTasklet
 
IndexInterface - Class in org.lexevs.dao.index.connection
This classes manages the interactions with a single lucene index directory.
IndexInterface(IndexerService) - Constructor for class org.lexevs.dao.index.connection.IndexInterface
Instantiates a new index interface.
IndexInterface(String) - Constructor for class org.lexevs.dao.index.connection.IndexInterface
Instantiates a new index interface.
IndexLexGridDatabase - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Output format for building a lucene index..
IndexLexGridDatabase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
IndexLexGridDatabase(String, String, boolean, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
IndexLoader - Interface in org.LexGrid.LexBIG.Extensions.Index
Manages registered index extensions.
IndexLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Loader for rebuilding lucene indexes.
IndexLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.IndexLoaderImpl
 
indexLocation_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
IndexLocationFactory - Class in org.lexevs.dao.index.factory
 
IndexLocationFactory() - Constructor for class org.lexevs.dao.index.factory.IndexLocationFactory
 
indexMetadata(String, String, URI, boolean) - Method in class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
indexMetadata(String, String, URI, boolean) - Method in interface org.lexevs.dao.index.indexer.MetadataIndexCreator
 
indexMetadata(String, String, URI, boolean) - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
indexMetadata(String, String, URI, boolean) - Method in interface org.lexevs.dao.index.service.metadata.MetadataIndexService
 
indexName_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
IndexQueryParserFactory - Class in org.LexGrid.LexBIG.Impl.dataAccess
Build the query parser to use for parsing the text portion of a user query.
IndexQueryParserFactory() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.IndexQueryParserFactory
 
IndexRegistry - Interface in org.lexevs.dao.index.indexregistry
 
IndexResolvedandAssertedValueSets - Class in org.lexgrid.valuesets.admin
Builds indexes associated with the source asserted value sets of the specified coding scheme.
IndexResolvedandAssertedValueSets() - Constructor for class org.lexgrid.valuesets.admin.IndexResolvedandAssertedValueSets
 
IndexServiceManager - Class in org.lexevs.dao.index.service
The Class IndexServiceManager.
IndexServiceManager() - Constructor for class org.lexevs.dao.index.service.IndexServiceManager
 
IndividualIdSetter<I> - Interface in org.lexgrid.loader.data.property
The Interface IndividualIdSetter.
IndividualVariableFactory<T> - Class in org.lexevs.system.constants
A factory for creating IndividualVariable objects.
IndividualVariableFactory() - Constructor for class org.lexevs.system.constants.IndividualVariableFactory
 
info(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Displays a status type of message (not an error or a warning)
info(String) - Method in class org.lexevs.logging.Logger
 
info(String, Throwable) - Method in class org.lexevs.logging.Logger
Info.
info(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
info(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
info(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
info(String) - Method in class org.lexevs.logging.SimpleLogger
 
info(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
info(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
info(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Displays a status type of message (not an error or a warning)
INHERITANCE_LEVEL - Static variable in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
InheritanceLevelType - Enum in org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types
Enumeration InheritanceLevelType.
InheritanceLevelTypeDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors
Class InheritanceLevelTypeDescriptor.
InheritanceLevelTypeDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
 
init() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceCollection
 
init() - Method in class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
init(CachingMessageDirectorIF) - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
init() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
init(AssertedValueSetParameters) - Method in interface org.lexevs.dao.database.service.valuesets.AssertedValueSetService
 
init(AssertedValueSetParameters) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
init() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
init(String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
init(String, String, String, String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
init() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
init() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Inits the.
init(Graph, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
init(Graph, String) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
init() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Inits the.
init() - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Initialize values
init() - Method in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
Initializes table constants
init() - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
init(AssertedValueSetParameters) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
initAllDifferentAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Init the AllDifferent association
initAllDifferentAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Init the AllDifferent association
initAnnotationProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
initAssociationEntities() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
initAssociationEntities() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
initCodingSchemes() - Method in class org.lexevs.dao.index.connection.IndexInterface
Inits the coding schemes.
initComplementOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize complementOf association.
initComplementOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize complementOf association.
initComponents(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
initComponents(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.CodingSchemeEditDialog
 
initComponents(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.EntityEditDialog
 
initComponents(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.PropertyEditDialog
 
initDatatypeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize rdfs:datatype association.
initDatatypeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize rdfs:datatype association.
initDatatypeValueAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize datatype values.
initDatatypeValueAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize datatype values.
initDefinitionEntry(long, DefinitionOperator) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
initDifferentFromAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize differentFrom association.
initDifferentFromAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize differentFrom association.
initDisjointWithAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize disjointWith association.
initDisjointWithAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize disjointWith association.
initDomainAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Intialize the rdfs:domain association.
initDomainAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Intialize the rdfs:domain association.
initEntityReference(Entity, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
initEquivalentClassAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize equivalentClass association.
initEquivalentClassAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize equivalentClass association.
initEquivalentPropertyAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize equivalentProperty Association.
initEquivalentPropertyAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize equivalentProperty Association.
INITIAL_PREFIX - Static variable in class org.lexevs.registry.constant.RegistryConstants
The INITIA l_ prefix.
InitializationException - Exception in org.lexevs.exceptions
An exception to throw when things go wrong during startup of a class.
InitializationException(String) - Constructor for exception org.lexevs.exceptions.InitializationException
Instantiates a new initialization exception.
InitializationException(String, Throwable) - Constructor for exception org.lexevs.exceptions.InitializationException
Instantiates a new initialization exception.
initialize() - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
 
initialize() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Initialize.
initialize() - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
initialize() - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
 
initialize() - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
initialize() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
initialize() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
initialize() - Method in interface org.lexevs.system.service.SystemResourceService
 
initializeCache() - Method in class org.lexevs.cache.CacheRegistry
 
initialized(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
initialized(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
initialized(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
initialized(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
initialized(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
initializeStagingSupport() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
initializeStagingSupport() - Method in interface org.lexgrid.loader.staging.StagingManager
Initialize staging support.
initializeSystemReleaseLoad(SystemRelease) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
initializetMappingTripleIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator
 
initialValue() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory.KeyIncrementerThreadLocal
 
initIndexes() - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Inits the indexes.
initInverseOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize inverseOf association.
initInverseOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize inverseOf association.
initIsoMap() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
initIterator(LexEvsTreeNode, boolean) - Method in interface org.lexevs.tree.dao.iterator.ChildTreeNodeIterator
Deprecated.
Inits the iterator.
initIterator(LexEvsTreeNode, boolean) - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
 
initIterator(LexEvsTreeNode, boolean) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.ChildTreeNodeIterator
Inits the iterator.
initIterator(LexEvsTreeNode, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
 
initLoadStatements() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
initMock() - Method in class org.lexevs.dao.database.operation.transitivity.BuildTransitivityTableIssuesWithMock
 
initMRCONSOTTYMAP() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
initOWLModelFromSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Initialize the Java model from source.
initOWLOntologyFromSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Initialize the Java model from source.
initOWLSpecificAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
This method simply initializes a set of OWL specific "associations".
initOWLSpecificAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
This method simply initializes a set of OWL specific "associations".
initParams(AssertedValueSetParameters) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
initParams(AssertedValueSetParameters) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
This parameter set is required for asserted value set services
initPreferences() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
Loads preferences.
initPreferences() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
Loads preferences.
initRangeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize the rdfs:range association.
initRangeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize the rdfs:range association.
initRdfTypeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize the instanceOf association.
initRdfTypeAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize the instanceOf association.
initRegistryMetadata() - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Inits the registry metadata.
initRegistryMetadata() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
initResourceManifest(ResourceManifest, LgMessageDirectorIF) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceReader
 
initResourceManifest(ResourceManifest, LgMessageDirectorIF) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
initRun(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyMapToLexGrid
 
initSameAsAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize sameAs association.
initSameAsAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize sameAs association.
initScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Initializes the EMF coding scheme and adds top-level containers for codes and relations.
initScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Initializes the EMF coding scheme and adds top-level containers for codes and relations.
initScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
Initialize metadata for the scheme.
initScheme() - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
 
initScheme() - Method in interface org.lexevs.dao.database.scheme.PersistenceScheme
Inits the scheme.
initSchemeMetadata() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Initialize further metadata about the coding scheme.
initSchemeMetadata() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Initialize further metadata about the coding scheme.
initSubClassOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize the subClassOfAssociation
initSubClassOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize the subClassOfAssociation
initSubPropertyOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationManager
Initialize hasSubProperty association.
initSubPropertyOfAssociation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationManager
Initialize hasSubProperty association.
initSubtypeRoot() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Initialize and return the root node for the subclass hierarchy.
initSubtypeRoot() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Initialize and return the root node for the subclass hierarchy.
initSupportedAssociationAnnotationProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
We need to find which annotation properties have a OWLNamedClass or OWLIndividual as the RHS and treat them as an association.
initSupportedAssociationAnnotationProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
We need to find which annotation properties have a OWLNamedClass or OWLIndividual as the RHS and treat them as an association.
initSupportedDataProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method initializes the OWL data properties.
initSupportedDatatypeProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method initializes the OWL datatype properties.
initSupportedDatatypes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method determines the various data types that are used in the ontology and stores them.
initSupportedDatatypes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method determines the various data types that are used in the ontology and stores them.
initSupportedMappings() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Initialize tracking of supported behavior specified in LexGrid metadata.
initSupportedMappings() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Initialize tracking of supported behavior specified in LexGrid metadata.
initSupportedObjectProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method initializes the user defined OWL object properties in the ontology.
initSupportedObjectProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method initializes the user defined OWL object properties in the ontology.
initValueSetDefintion(String, String, boolean, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
InOrderOrderingBatchInserterDecorator - Class in org.lexevs.dao.database.ibatis.batch
The Class OrderingBatchInserterDecorator.
InOrderOrderingBatchInserterDecorator(BatchInserter) - Constructor for class org.lexevs.dao.database.ibatis.batch.InOrderOrderingBatchInserterDecorator
Instantiates a new ordering batch inserter decorator.
InOrderOrderingBatchInserterDecorator(BatchInserter, BatchOrderClassifier) - Constructor for class org.lexevs.dao.database.ibatis.batch.InOrderOrderingBatchInserterDecorator
 
inPagingNext - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.DefinitionEntryContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionContentProvider
 
inputChanged(Viewer, Object, Object) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceContentProvider
 
InputFormatInterface - Interface in edu.mayo.informatics.lexgrid.convert.formats
Defines the interface for input formats.
insert(String, Object) - Method in class org.lexevs.dao.database.ibatis.batch.InOrderOrderingBatchInserterDecorator
 
insert(String, Object) - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapClientTemplateInserter
 
insert(String, Object) - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
 
insert(String, Object) - Method in interface org.lexevs.dao.database.inserter.Inserter
Insert.
insert(String, String, URIMap) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
Insert.
insert(String, String, URIMap) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
insert(String, String, URIMap) - Method in class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
Insert.
INSERT_ASSOCIATION_PREDICATE_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
The INSER t_ associatio n_ predicat e_ sql.
INSERT_ASSOCIATION_QUAL_OR_CONTEXT_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
The INSER t_ associatio n_ qua l_ o r_ contex t_ sql.
INSERT_ASSOCIATIONDATA_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationDataService
The Constant INSERT_ASSOCIATIONDATA_ERROR.
INSERT_ASSOCIATIONDATA_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationDataService
The Constant INSERT_ASSOCIATIONDATA_VERSIONABLE_CHANGES_ERROR.
INSERT_ASSOCIATIONENTITY_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
INSERT_ASSOCIATIONPREDICATE_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationService
The Constant INSERT_ASSOCIATIONPREDICATE_ERROR.
INSERT_ASSOCIATIONSOURCE_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationService
The Constant INSERT_ASSOCIATIONSOURCE_ERROR.
INSERT_ASSOCIATIONTARGET_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationTargetService
The Constant INSERT_ASSOCIATIONTARGET_ERROR.
INSERT_ASSOCIATIONTARGET_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationTargetService
The Constant INSERT_ASSOCIATIONTARGET_VERSIONABLE_CHANGES_ERROR.
INSERT_BATCH_ENTITY_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant INSERT_BATCH_ENTITY_ERROR.
INSERT_BATCH_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_BATCH_PROPERTY_ERROR.
INSERT_CODINGSCHEME_DEPENDENT_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant INSERT_CODINGSCHEME_DEPENDENT_CHANGES_ERROR.
INSERT_CODINGSCHEME_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant INSERT_CODINGSCHEME_ERROR.
INSERT_CODINGSCHEME_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_CODINGSCHEME_PROPERTY_ERROR.
INSERT_CODINGSCHEME_PROPERTY_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_CODINGSCHEME_PROPERTY_VERSIONABLE_CHANGES_ERROR.
INSERT_CODINGSCHEME_URI_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant INSERT_CODINGSCHEME_URI_ERROR.
INSERT_CODINGSCHEME_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant INSERT_CODINGSCHEME_VERSIONABLE_CHANGES_ERROR.
INSERT_DEFINITION_ENTRY_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
INSERT_ENTITY_ASSN_DATA_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
INSERT_ENTITY_ASSN_ENTITY_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
INSERT_ENTITY_DEPENDENT_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant INSERT_ENTITY_DEPENDENT_CHANGES_ERROR.
INSERT_ENTITY_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant INSERT_ENTITY_ERROR.
INSERT_ENTITY_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_ENTITY_PROPERTY_ERROR.
INSERT_ENTITY_PROPERTY_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_ENTITY_PROPERTY_VERSIONABLE_CHANGES_ERROR.
INSERT_ENTITY_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The INSER t_ entit y_ sql.
INSERT_ENTITY_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
The INSER t_ entit y_ typ e_ sql.
INSERT_ENTITY_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant INSERT_ENTITY_VERSIONABLE_CHANGES_ERROR.
INSERT_ENTRY_STATE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
The INSER t_ entr y_ stat e_ sql.
INSERT_ENTRY_STATE_SQL - Static variable in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
INSERT_INTO_ASSOCIATION_DEFINITION - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_INTO_CODED_ENTRY - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_INTO_CODING_SCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_INTO_CODING_SCHEME_SUPPORTED_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_INTO_CONCEPT_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_INTO_CONCEPT_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
INSERT_MULTI_ATTRIB_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
INSERT_MULTI_ATTRIB_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
INSERT_PICKLIST_DEFINITION_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
The INSER t_ picklis t_ definitio n_ sql.
INSERT_PROPERTY_MULTIATTRIB_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
INSERT_PROPERTY_MULTIATTRIB_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
INSERT_PROPERTY_QUALIFIER_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The INSER t_ propert y_ qualifie r_ sql.
INSERT_PROPERTY_QUALIFIER_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
INSERT_PROPERTY_SOURCE_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The INSER t_ propert y_ sourc e_ sql.
INSERT_PROPERTY_SOURCE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
INSERT_PROPERTY_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The INSER t_ propert y_ sql.
INSERT_PROPERTY_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
INSERT_PROPERTY_USAGECONTEXT_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The INSER t_ propert y_ usagecontex t_ sql.
INSERT_PROPERTY_USAGECONTEXT_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
INSERT_PROPERTYLINK_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
The INSER t_ propertylin k_ sql.
INSERT_RELATION_DEPENDENT_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.relation.RelationService
The Constant INSERT_RELATION_DEPENDENT_CHANGES_ERROR.
INSERT_RELATION_ERROR - Static variable in interface org.lexevs.dao.database.service.relation.RelationService
The Constant INSERT_RELATION_ERROR.
INSERT_RELATION_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_RELATION_PROPERTY_ERROR.
INSERT_RELATION_PROPERTY_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant INSERT_RELATION_PROPERTY_VERSIONABLE_CHANGES_ERROR.
INSERT_RELATION_VERSIONABLE_CHANGES_ERROR - Static variable in interface org.lexevs.dao.database.service.relation.RelationService
The Constant INSERT_RELATION_VERSIONABLE_CHANGES_ERROR.
INSERT_RELATIONS_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
The INSER t_ relation s_ sql.
INSERT_TRANSITIVE_CLOSURE_SQL - Static variable in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
The INSER t_ transitiv e_ closur e_ sql.
INSERT_URIMAPS_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
INSERT_URIMAPS_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
INSERT_VALUESET_DEFINITION_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertAssociationData(String, String, AssociationSource, AssociationData) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
insertAssociationData(String, String, AssociationSource, AssociationData, Inserter) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
insertAssociationData(String, String, String, String, AssociationData) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
insertAssociationData(String, String, AssociationSource, AssociationData) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
insertAssociationData(String, String, String, String, AssociationData) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
insertAssociationData(String, String, AssociationSource, AssociationData, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
insertAssociationData(String, String, String, String, String, String, AssociationData) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Insert association data.
insertAssociationData(String, String, String, String, String, String, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
insertAssociationEntity(String, String, AssociationEntity, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertAssociationEntity(String, String, AssociationEntity) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertAssociationEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
insertAssociationPredicate(String, String, AssociationPredicate) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
Insert association predicate.
insertAssociationPredicate(String, String, AssociationPredicate, boolean) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert association predicate.
insertAssociationPredicate(String, String, AssociationPredicate, boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertAssociationPredicate(String, String, String, AssociationPredicate) - Method in interface org.lexevs.dao.database.service.association.AssociationService
Insert association predicate.
insertAssociationPredicate(String, String, String, AssociationPredicate) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
Insert association predicate.
InsertAssociationPredicateBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertAssociationPredicateBean.
InsertAssociationPredicateBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationPredicateBean
 
InsertAssociationQualificationOrUsageContextBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertAssociationQualificationOrUsageContextBean.
InsertAssociationQualificationOrUsageContextBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
 
insertAssociationQualifier(String, String, AssociationQualification) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert association qualifier.
insertAssociationQualifier(String, String, AssociationQualification) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertAssociationSource(String, String, AssociationSource) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert association source.
insertAssociationSource(String, String, AssociationSource) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertAssociationSource(String, String, AssociationSource, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Insert association source.
insertAssociationSource(String, String, String, String, AssociationSource) - Method in interface org.lexevs.dao.database.service.association.AssociationService
Insert association source.
insertAssociationSource(String, String, String, String, AssociationSource) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
 
insertAssociationSourceBatch(String, List<AssociationSourceBatchInsertItem>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
Insert association source.
insertAssociationTarget(String, String, AssociationSource, AssociationTarget) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
insertAssociationTarget(String, String, String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
insertAssociationTarget(String, String, AssociationSource, AssociationTarget, Inserter) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
insertAssociationTarget(String, String, AssociationSource, AssociationTarget) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
insertAssociationTarget(String, String, String, String, AssociationTarget) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
insertAssociationTarget(String, String, AssociationSource, AssociationTarget, Inserter) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
insertAssociationTarget(String, String, String, String, String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Insert association target.
insertAssociationTarget(String, String, String, String, String, String, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
insertBatchAssociationQualifiers(String, List<AssociationQualifierBatchInsertItem>, HashMap<String, String>) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
insertBatchAssociationQualifiers(String, List<AssociationQualifierBatchInsertItem>, HashMap<String, String>) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertBatchAssociationSources(String, List<AssociationSourceBatchInsertItem>) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert batch association sources.
insertBatchAssociationSources(String, String, List<AssociationSource>) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert batch association sources.
insertBatchAssociationSources(String, List<AssociationSourceBatchInsertItem>) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertBatchAssociationSources(String, String, List<AssociationSource>) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertBatchEntities(String, List<? extends Entity>, boolean) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Insert batch entities.
insertBatchEntities(String, List<? extends Entity>, boolean) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
insertBatchEntities(String, String, List<? extends Entity>) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Insert batch entities.
insertBatchEntities(String, String, List<? extends Entity>) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
insertBatchEntities(String, List<? extends Entity>, boolean) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
insertBatchEntity() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
Insert batch entity.
insertBatchEntityProperties(String, String, String, String, List<Property>) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Insert batch entity properties.
insertBatchEntityProperties(String, String, String, String, List<Property>) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
insertBatchEntityWithDuplicatePropId() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertBatchEntityWithInvalidPropLink() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertBatchEntityWithoutCodingNamespace() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertBatchProperties(String, PropertyDao.PropertyType, List<PropertyBatchInsertItem>) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert batch properties.
insertBatchProperties(String, PropertyDao.PropertyType, List<PropertyBatchInsertItem>) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertBatchProperties(String, PropertyDao.PropertyType, List<PropertyBatchInsertItem>, BatchInserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Insert batch properties.
insertBatchTransitiveClosure(String, List<TransitiveClosureBatchInsertItem>) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
insertBatchTransitiveClosure(String, List<TransitiveClosureBatchInsertItem>) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Insert batch transitive closure.
insertCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
 
insertCodingScheme(CodingScheme) - Method in interface edu.mayo.informatics.lexgrid.convert.inserter.CodingSchemeInserter
Insert coding scheme.
insertCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
 
insertCodingScheme(CodingScheme, String, boolean) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert coding scheme.
insertCodingScheme(CodingScheme, String, boolean) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertCodingScheme() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Insert coding scheme.
insertCodingScheme(CodingScheme, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Insert coding scheme.
insertCodingScheme(CodingScheme, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
insertCodingScheme() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
Insert coding scheme.
insertCodingScheme(CodingScheme, String, boolean) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertCodingSchemeDependentChanges(String, CodingScheme) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Methods loads Dependent changes belonging to the CodingScheme.
insertCodingSchemeDependentChanges(String, CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertCodingSchemeDependentChanges(String, CodingScheme) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertCodingSchemeLocalName(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert coding scheme local name.
insertCodingSchemeLocalName(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertCodingSchemeLocalName(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertCodingSchemeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Insert coding scheme property.
insertCodingSchemeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
insertCodingSchemeSource(String, Source) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert coding scheme source.
insertCodingSchemeSource(String, Source) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertCodingSchemeSource(String, Source) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertCodingSchemeWithLocalName() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
Insert coding scheme with local name.
insertDefinitionEntry(ValueSetDefinition, DefinitionEntry) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Insert value set definition entry.
insertDefinitionEntry(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
Insert value set definition entry.
insertDefinitionEntry(ValueSetDefinition, DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertDefinitionEntry(String, DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
insertDefinitionEntry(ValueSetDefinition, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Insert value set definition Entry.
insertDefinitionEntry(ValueSetDefinition, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
insertDependentChanges(I, T, VersionsDao.EntryStateType) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Insert dependent changes.
insertDependentChanges(PickListDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Insert dependent changes.
insertDependentChanges(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Insert dependent changes.
insertDependentChanges(ValueSetDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Insert dependent changes.
insertDependentChanges(PickListDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
insertDependentChanges(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
insertDependentChanges(ValueSetDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
insertEntity(String, Entity, boolean) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Insert entity.
insertEntity(String, Entity, boolean) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
insertEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Insert entity.
insertEntity(String, String, Entity) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Insert entity.
insertEntity() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
Insert entity.
insertEntity(String, String, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
insertEntity(String, Entity, boolean) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
insertEntityBatch(String, String, String, List<Entity>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
Insert entity.
insertEntityProperty(String, String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Insert entity property.
insertEntityProperty(String, String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
insertEntityWithDuplicatePropId() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertEntityWithException() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Insert entity.
insertEntityWithInvalidPropLink() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertEntityWithoutCodingNamespace() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
insertEntryState(String, String, String, String, EntryState) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
Insert entry state.
insertEntryState(String, String, String, EntryState) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
Insert entry state.
insertEntryState(String, String, VersionsDao.EntryStateType, String, EntryState) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
insertEntryState(String, String, String, VersionsDao.EntryStateType, String, EntryState) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
insertEntryState(String, String, String, VersionsDao.EntryStateType, String, EntryState, Inserter) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
insertEntryState(String, String, String, String, String, EntryState, Inserter) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
Insert entry state.
insertEntryState(String, String, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
insertEntryState(String, String, String, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
insertEntryState(String, String, String, VersionsDao.EntryStateType, String, EntryState, Inserter) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
insertEntryState(String, String, VersionsDao.EntryStateType, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
insertEntryState(String, String, String, VersionsDao.EntryStateType, String, EntryState) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
insertEntryState() - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDaoTest
Insert entry state.
InsertEntryStateBean - Class in org.lexevs.dao.database.ibatis.versions.parameter
The Class InsertEntryStateBean.
InsertEntryStateBean() - Constructor for class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
 
Inserter - Interface in org.lexevs.dao.database.inserter
The Interface Inserter.
insertGenericProperty() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert generic property.
insertHistoryAssociationData(String, String, Boolean, Boolean) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
insertHistoryAssociationData(String, String, Boolean, Boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
insertHistoryAssociationTarget(String, String, Boolean, Boolean) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
insertHistoryAssociationTarget(String, String, Boolean, Boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
insertHistoryCodingScheme(String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Method pushes the codingScheme metadata details to history.
insertHistoryCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertHistoryCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Insert history coding scheme.
insertHistoryCodingScheme(String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertHistoryDefinitionEntry(String, String, DefinitionEntry) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
insertHistoryDefinitionEntry(String, String, DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
insertHistoryEntity(String, String, Entity) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Insert history entity.
insertHistoryEntity(String, String, Entity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
insertHistoryEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Insert entity.
insertHistoryEntity(String, Entity) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
insertHistoryEntity(String, String, Entity) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
insertHistoryPickListDefinition(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
insertHistoryPickListDefinition(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
insertHistoryPickListEntryNode(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
insertHistoryPickListEntryNode(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
insertHistoryProperty(String, String, Property) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
insert property data into history.
insertHistoryProperty(String, String, VSPropertyDao.ReferenceType, Property) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
insertHistoryProperty(String, String, Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertHistoryProperty() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert generic property.
insertHistoryProperty(String, String, VSPropertyDao.ReferenceType, Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
insertHistoryRelation(String, String, Relations) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
insertHistoryRelation(String, String, Relations) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertHistoryValueSetDefinition(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
insertHistoryValueSetDefinition(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertIntoAssociations - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoCodingScheme - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoCodingSchemeMultiAttributes - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoCodingSchemeSupportedAttributes - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoCodingSchemeSupportedAttributes(String, String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoConceptPropertyLinks(String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoConceptsMultiAttributes - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntities - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityAssociationsToEntity - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityAssociationsToEntityQualifier - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityProperty - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityPropertyLinks - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityPropertyMultiAttributes - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntityType - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoEntryState - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoHistory(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationData, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
insertIntoHistory(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, AssociationTarget, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
insertIntoHistory(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, CodingScheme, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
insertIntoHistory(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Entity, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
insertIntoHistory(RevisableAbstractDatabaseService.ParentUidReferencingId, Property, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
insertIntoHistory(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, Relations, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
insertIntoHistory(I, T, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Insert into history.
insertIntoMappings(Mappings, URIMap) - Static method in class org.lexevs.dao.database.utility.DaoUtility
Insert into mappings.
insertIntoRelations - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
insertIntoTransitiveClosure(String, String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert into transitive closure.
insertIntoTransitiveClosure(String, String, String, String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertMappings(String, Mappings) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert mappings.
insertMappings(String, Mappings) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
insertMappings(String, Mappings) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertMappings(String, Mappings) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
insertMappings(String, Mappings) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertMappings(String, Mappings) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertMappings(String, String, Mappings) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Insert mappings.
insertNciChangeEvent(String, NCIChangeEvent) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
insertNciChangeEvent(String, NCIChangeEvent) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
insertNCIChangeEvent(String, NCIChangeEvent) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Insert nci change event.
insertNCIChangeEvent(String, NCIChangeEvent) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
InsertOrUpdateAssociationDataBean - Class in org.lexevs.dao.database.ibatis.association.parameter
 
InsertOrUpdateAssociationDataBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
 
InsertOrUpdateAssociationEntityBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertAssociationPredicateBean.
InsertOrUpdateAssociationEntityBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationEntityBean
 
InsertOrUpdateAssociationTargetBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertAssociationSourceBean.
InsertOrUpdateAssociationTargetBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
 
InsertOrUpdateCodingSchemeBean - Class in org.lexevs.dao.database.ibatis.codingscheme.parameter
The Class InsertOrUpdateCodingSchemeBean.
InsertOrUpdateCodingSchemeBean() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
 
InsertOrUpdateCodingSchemeMultiAttribBean - Class in org.lexevs.dao.database.ibatis.codingscheme.parameter
The Class InsertCodingSchemeMultiAttribBean.
InsertOrUpdateCodingSchemeMultiAttribBean() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
 
insertOrUpdateCodingSchemeSource(String, Source) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
insertOrUpdateCodingSchemeSource(String, Source) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertOrUpdateCodingSchemeSource(String, Source) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
InsertOrUpdateDefinitionEntryBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
The Class to handle insert or update DefinitionEntry table.
InsertOrUpdateDefinitionEntryBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
InsertOrUpdateEntityBean - Class in org.lexevs.dao.database.ibatis.entity.parameter
The Class InsertEntityBean.
InsertOrUpdateEntityBean() - Constructor for class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
InsertOrUpdatePickListEntryBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
The Class to handle insert or update PickListEntry table.
InsertOrUpdatePickListEntryBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
InsertOrUpdatePropertyBean - Class in org.lexevs.dao.database.ibatis.property.parameter
The Class InsertPropertyBean.
InsertOrUpdatePropertyBean() - Constructor for class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
InsertOrUpdateRelationsBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertRelationsBean.
InsertOrUpdateRelationsBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateRelationsBean
 
insertOrUpdateURIMap(String, URIMap) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
 
insertOrUpdateURIMap(String, URIMap) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertOrUpdateURIMap(String, URIMap) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
InsertOrUpdateURIMapBean - Class in org.lexevs.dao.database.ibatis.codingscheme.parameter
The Class InsertURIMapBean.
InsertOrUpdateURIMapBean() - Constructor for class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
 
InsertOrUpdateValueSetsMultiAttribBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
The Class InsertOrUpdateMultiAttribBean.
InsertOrUpdateValueSetsMultiAttribBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
insertPickListDefinition(PickListDefinition, String, Mappings) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Insert pick list definition.
insertPickListDefinition(PickListDefinition, String, Mappings) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
insertPickListDefinition(PickListDefinition, String, Mappings) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Insert pick list definition.
insertPickListDefinition(PickListDefinition, String, Mappings) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
InsertPickListDefinitionBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
The Class InsertPickListDefinitionBean.
InsertPickListDefinitionBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
 
insertPickListDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertPickListDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert pick list definition property.
insertPickListDefinitions(PickListDefinitions, String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Insert pick list definitions.
insertPickListDefinitions(PickListDefinitions, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
insertPickListDefPropVersionableChanges(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertPickListDefPropVersionableChanges(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert pick list def prop versionable changes.
insertPickListEntry(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
Insert pick list entry.
insertPickListEntry(String, PickListEntryNode) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
insertPickListEntryNode(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Insert pick list entry node.
insertPickListEntryNode(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
insertPickListEntryNodeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertPickListEntryNodeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert pick list entry node property.
insertPickListEntryNodePropVersionableChanges(String, String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertPickListEntryNodePropVersionableChanges(String, String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert pick list entry node prop versionable changes.
insertPrefixVariable(String) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Insert prefix variable.
insertPresentation() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert presentation.
insertProperty(String, String, PropertyDao.PropertyType, Property) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert property.
insertProperty(String, VSPropertyDao.ReferenceType, Property) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Insert property.
insertProperty(String, String, PropertyDao.PropertyType, Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertProperty(String, String, String, PropertyDao.PropertyType, Property, Inserter) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Insert property.
insertProperty(String, VSPropertyDao.ReferenceType, Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
insertPropertyLink(String, String, PropertyLink) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert property link.
insertPropertyLink(String, String, PropertyLink) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertPropertyLink() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert property link.
insertPropertyLink(String, String, String, String, String) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
insertPropertyLink(String, String, String, String, String) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
InsertPropertyLinkBean - Class in org.lexevs.dao.database.ibatis.property.parameter
The Class InsertPropertyLinkBean.
InsertPropertyLinkBean() - Constructor for class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
 
InsertPropertyMultiAttribBean - Class in org.lexevs.dao.database.ibatis.property.parameter
The Class InsertPropertyMultiAttribBean.
InsertPropertyMultiAttribBean() - Constructor for class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
 
insertPropertyQualifier(String, String, PropertyQualifier) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert property qualifier.
insertPropertyQualifier(String, PropertyQualifier) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Insert property qualifier.
insertPropertyQualifier(String, String, PropertyQualifier) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertPropertyQualifier() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert property qualifier.
insertPropertyQualifier(String, PropertyQualifier) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
insertPropertySource(String, String, Source) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert property source.
insertPropertySource(String, Source) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Insert property source.
insertPropertySource(String, String, Source) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertPropertySource() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert property source.
insertPropertySource(String, Source) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
insertPropertyUsageContext(String, String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Insert property usage context.
insertPropertyUsageContext(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Insert property usage context.
insertPropertyUsageContext(String, String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
insertPropertyUsageContext() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
Insert property usage context.
insertPropertyUsageContext(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
insertRegistryEntry(RegistryEntry) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Insert registry entry.
insertRegistryEntry(RegistryEntry) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
insertRelation(String, String, Relations) - Method in interface org.lexevs.dao.database.service.relation.RelationService
Insert relation.
insertRelation(String, String, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
insertRelationProperty(String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Insert relation property.
insertRelationProperty(String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
insertRelations(String, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
Insert relations.
insertRelations(String, Relations, boolean) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
Insert relations.
insertRelations(String, Relations, boolean) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
insertRevision(Revision) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
Insert revision.
insertRevision(Revision) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
InsertRevisionBean - Class in org.lexevs.dao.database.ibatis.versions.parameter
 
InsertRevisionBean() - Constructor for class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
 
insertRevisionEntry(Revision, String) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
insert system release entry.
insertRevisionEntry(Revision, String) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
insertRow(String, Map) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Runs SQL Statement "INSERT" on the given table and and table prefix for the supplied attributeValues
insertSystemRelease(String, SystemRelease) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
insertSystemRelease(SystemRelease) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
Insert system release.
insertSystemRelease(String, SystemRelease) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
insertSystemRelease(SystemRelease) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
insertSystemRelease(String, SystemRelease) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Insert system release.
insertSystemRelease(String, SystemRelease) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
InsertSystemReleaseBean - Class in org.lexevs.dao.database.ibatis.versions.parameter
 
InsertSystemReleaseBean() - Constructor for class org.lexevs.dao.database.ibatis.versions.parameter.InsertSystemReleaseBean
 
insertSystemReleaseEntry(SystemRelease) - Method in interface org.lexevs.dao.database.access.systemRelease.SystemReleaseDao
insert system release entry.
insertSystemReleaseEntry(SystemRelease) - Method in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
 
insertSystemReleaseMetadata(SystemRelease) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
insert system release entry.
insertSystemReleaseMetadata(SystemRelease) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
 
InsertTableMetadataBean - Class in org.lexevs.dao.database.ibatis.tablemetadata.parameter
The Class InsertTableMetadataBean.
InsertTableMetadataBean() - Constructor for class org.lexevs.dao.database.ibatis.tablemetadata.parameter.InsertTableMetadataBean
 
InsertTransitiveClosureBean - Class in org.lexevs.dao.database.ibatis.association.parameter
The Class InsertTransitiveClosureBean.
InsertTransitiveClosureBean() - Constructor for class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Instantiates a new insert transitive closure bean.
insertURIMap(String, List<URIMap>) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert uri map.
insertURIMap(String, URIMap) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Insert uri map.
insertURIMap(String, URIMap) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertURIMap(String, List<URIMap>) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
insertURIMap(String, List<URIMap>) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
insertURIMap(String, URIMap) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
insertURIMap(String, List<URIMap>) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertURIMap(String, URIMap) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertURIMap(String, String, URIMap) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Insert uri map.
insertURIMap(String, String, URIMap) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
insertURIMap(String, String, URIMap) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Insert uri map.
insertURIMap(String, List<URIMap>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertURIMap(String, URIMap) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
insertURIMap(String, String, URIMap) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
Insert uri map.
insertValueSetDefinition(String, ValueSetDefinition) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Insert value set definition.
insertValueSetDefinition(String, ValueSetDefinition, Mappings) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Inserts value set definition and its mappings.
insertValueSetDefinition(String, ValueSetDefinition, Mappings) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertValueSetDefinition(String, ValueSetDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertValueSetDefinition(ValueSetDefinition, String, Mappings) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Insert value set definition into the system.
insertValueSetDefinition(ValueSetDefinition, String, Mappings) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
InsertValueSetDefinitionBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
The Class InsertValueSetDefinitionBean.
InsertValueSetDefinitionBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
 
insertValueSetDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertValueSetDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert value set definition property.
insertValueSetDefinitions(String, ValueSetDefinitions, Mappings) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Inserts value set definitions and its mappings.
insertValueSetDefinitions(String, ValueSetDefinitions, Mappings) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
insertValueSetDefinitions(ValueSetDefinitions, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Insert value set definitions.
insertValueSetDefinitions(ValueSetDefinitions, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
insertValueSetDefPropVersionableChanges(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
insertValueSetDefPropVersionableChanges(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Insert value set def prop versionable changes.
insertVersionableChanges(I, T, VersionsDao.EntryStateType) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Insert versionable changes.
insertVSDefinitionEntry(String, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
insertVSDefinitionEntry(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Insert vs definition entry.
instance() - Static method in class org.lexevs.registry.WriteLockManager
Instance.
instance(File) - Static method in class org.lexevs.registry.WriteLockManager
Instance.
instance() - Static method in class org.lexevs.system.ResourceManager
Deprecated.
Instance.
instance() - Static method in class org.lexevs.system.utility.MyClassLoader
Deprecated.
instance(SystemVariables, LgLoggerIF) - Static method in class org.lexevs.system.utility.MyClassLoader
Deprecated.
Instance - Class in org.LexGrid.concepts
Deprecated.
Instance() - Constructor for class org.LexGrid.concepts.Instance
Deprecated.
 
instance() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
INSTANCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
INSTANCE_CTX - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
INSTANCE_SUFFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
instanceOfTermId - Variable in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
instanceOfTermPrefix - Variable in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
InstanceToGuid - Class in org.lexevs.dao.database.access.association.model
 
InstanceToGuid() - Constructor for class org.lexevs.dao.database.access.association.model.InstanceToGuid
 
INSTRUCTION_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
INT - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
IntegerOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class IntegerOption.
IntegerOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.IntegerOption
Instantiates a new integer option.
IntegerOption(String, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.IntegerOption
 
internalCodingSchemeName - Variable in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
InternalException - Exception in org.lexevs.exceptions
Parent class for the all internal exceptions..
InternalException(String) - Constructor for exception org.lexevs.exceptions.InternalException
Instantiates a new internal exception.
InternalException(String, Throwable) - Constructor for exception org.lexevs.exceptions.InternalException
Instantiates a new internal exception.
internalVersion - Variable in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
interrupt() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
A new method that interrupts the worker thread.
intersect(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
intersect(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
intersect(CodeHolder) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Intersect.
intersect(CodeHolder) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
intersect(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
intersect(KeyedGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
intersect(CodedNodeGraph) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return the set of nodes and associations that are present in both graphs.
intersect(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Return a coded node set that represents the set of nodes this set and the provided node set have in common.
intersectAssociation(Association, Association) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
intersectAssociationList(AssociationList, AssociationList) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
IntersectGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class IntersectGraph.
IntersectGraph() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
IntersectGraph(CodedNodeGraph, CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
Instantiates a new intersect graph.
INTERSECTION - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
Intersection - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for a Intersection operation on a graph.
Intersection(CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.Intersection
 
intersection(GHolder) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Performs a boolean intersection of this graph holder with another.
intersectLinks(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
Maintain only those links shared with the given node; drop the rest.
intersectReference(ResolvedConceptReference, ResolvedConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
intersectReference(AssociatedConcept, AssociatedConcept) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
intersectReferenceList(boolean, ResolvedConceptReferenceList, ResolvedConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
intersectReferenceList(ResolvedConceptReferenceList, ResolvedConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
inUse - Variable in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
inUse - Variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
INVALID_CONCEPT_REFERENCE - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
INVALID_MATCH_CONCEPT_REFERENCE - Static variable in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
InvalidMatchCodeNamspacePair() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder.InvalidMatchCodeNamspacePair
 
InvalidPropertyLinkListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving invalidPropertyLink events.
InvalidPropertyLinkListener() - Constructor for class org.lexevs.dao.database.service.listener.InvalidPropertyLinkListener
 
INVERSE_IS_A - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
inverseOf - Variable in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
inverseOrInverseId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
invoke(MethodInvocation) - Method in class org.lexevs.cache.MethodCachingInterceptor
 
invoke(MethodInvocation) - Method in class org.lexevs.dao.database.service.error.ErrorCallbackInterceptor
 
invoke(MethodInvocation) - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptor
 
IS_DBXREF_REPFORM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
IS_DBXREF_REPFORM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
IS_DBXREF_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
IS_DBXREF_SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
is_expandable() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
IS_MAPPING - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
isActive() - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
Checks if is active.
isActive() - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
isActive(String, String) - Method in class org.lexevs.registry.service.XmlRegistry
Checks if is active.
isActiveSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
isActive sort which implements the Sort interface.
isActiveSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.isActiveSort
 
isAdminEnabled() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
isAnonymous - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
isAnonymous() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
isAnonymous() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
is entity anonymous
isAPILoggingEnabled() - Method in class org.lexevs.logging.Logger
Checks if is aPI logging enabled.
isAPILoggingEnabled() - Method in class org.lexevs.system.constants.SystemVariables
 
isAscending() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
Returns the value of field 'ascending'.
isAssociatedConceptAlreadyInGraph(String, AssociatedConcept) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.CycleDetectingCallback
Checks if is associated concept already in graph.
isAssociatedConceptAlreadyInGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.ReferenceReturningCycleDetectingCallback
 
isAssociatedConceptAlreadyInGraph(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
 
isAssociationSymmetric(String, String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Checks if is association symmetric.
isAssociationSymmetric(String, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
isAsync() - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Checks if is async.
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceView
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceView
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierView
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceView
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
isChangesMade() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceView
 
isChangeTypeDependent(Versionable) - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Checks if is change type dependent.
isChangeTypeRemove(Versionable) - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Checks if is change type remove.
isChildless() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
isClosed() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
isClosed() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
isCloseOnCompletion() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
isCodeInGraph(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
isCodeInGraph(ConceptReference, ArrayList<Operation>, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
isCodeInGraph(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
isCodeInGraph(ConceptReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Determine whether the supplied code is in the graph.
isCodeInSet(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
isCodeInSet(ConceptReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Return true if the supplied code reference is contained within this coded node set.
isCodeRetired(String, String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Indicates if the given code is considered retired or inactive within context of the provided scheme.
isCodeRetired(String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
isCodeRetired(String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return the retired status of a concept code.
isCodingSchemeAssociation(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeAssociationData(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeAssociationSource(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeEntities(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeEntity(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
Checks for any kind of entity
isCodingSchemeEntityProperty(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeLoaded(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
isCodingSchemeLoaded(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
isCodingSchemeMappings(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemePresent(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
isCodingSchemeProperties(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemePropertiesRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeProperty(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeRelation(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isCodingSchemeRelationWithEmptyPredicate(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
Looking for an empty predicate just because the model allows it. runs the risk of allowing a large predicate to be populated.
isCodingSchemeVersionLoaded(String, String) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Checks if the supplied codingScheme and version is loaded.
isCommonLexGridSchemaInstalled() - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
 
isCommonLexGridSchemaInstalled() - Method in interface org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheck
Checks if is common lex grid schema installed.
isCompleteSet() - Method in class org.LexGrid.valueSets.PickListDefinition
Returns the value of field 'completeSet'.
isComplexProps_isDbxRefRepForm() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isComplexProps_isDbxRefRepForm() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
isComplexProps_isDbxRefSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isComplexProps_isDbxRefSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
isCreateConceptForObjectProp() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'createConceptForObjectProp'.
isDebug() - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Checks if is debug.
isDebugEnabled() - Method in class org.lexevs.logging.Logger
Checks if is debug enabled.
isDebugEnabled() - Static method in class org.lexevs.system.constants.SystemVariables
 
isDecorateNext() - Method in class org.lexevs.paging.AbstractPageableIterator
Checks if is decorate next.
isDefault() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
isDefault() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
isDefined - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
isDefinedOrNothing - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
isDeleteXmlAfterLoad() - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
 
isDoApplyPostLoadManifest() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isDoComputeTransitiveClosure() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isDoIndexing() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isDoManageInverseAndTransitiveDesignation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isDoRegister() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isDoRemoveOnFailure() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isDropOnClose() - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
isElementDefinition() - Method in class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.codingSchemes.descriptors.CodingSchemesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.DescribableDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.EntityDescriptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.SourceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.TextDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.types.descriptors.EntityTypesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.CommentDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.DefinitionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.EntitiesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.EntityDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.PresentationDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AbsoluteCodingSchemeVersionReferenceListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedConceptListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociatedDataListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.AssociationListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodedNodeReferenceListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeRenderingListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeSummaryListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeTagListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.CodingSchemeVersionListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptCodesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ConceptReferenceListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ExtensionDescriptionListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AbsoluteCodingSchemeVersionReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedConceptDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociatedDataDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.AssociationDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodedNodeReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeSummaryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.CodingSchemeVersionOrTagDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ConceptReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.CodingSchemeVersionStatusDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.ActiveOptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.HierarchyPathResolveOptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.CodingSchemeRenderingDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExportStatusDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ExtensionDescriptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors.ChangeTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors.HL7LoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors.InheritanceLevelTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CodingSchemeManifestListDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfAssociationDefinitionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeNameDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfCodingSchemeURIDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfDefaultLanguageDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfEntityDescriptionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfFormalNameDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfLocalNameDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfMappingsDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfSourceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfTextDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.LexOnt.descriptors.CsmfVersionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.MappingsDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedContextDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.naming.descriptors.URIMapDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociatableElementDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationDataDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationEntityDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationPredicateDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationQualificationDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationSourceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.AssociationTargetDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.relations.descriptors.RelationsDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.CodingSchemeReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.DefinitionEntryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.EntityReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.valueSets.types.descriptors.DefinitionOperatorDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.ChangedEntryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.CodingSchemeVersionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.EditHistoryDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.EntityVersionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.EntryStateDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.RevisionDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
Method isElementDefinition.
isElementDefinition() - Method in class org.LexGrid.versions.types.descriptors.ChangeTypeDescriptor
Method isElementDefinition.
isEnableListeners() - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
Checks if is enable listeners.
isEntityAssnsToEQualsIndexPresent(SQLInterface) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Checks if the EntityAssnsToEQuals multiAttributesKey column index is present.
isEntityAssnsToEQualsIndexPresent(SQLInterface) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Checks if the EntityAssnsToEQuals multiAttributesKey column index is present
isEntityCodeRegistered(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Indicates if the given entity code has been registered against a namespace.
isEntityCodeRegistered(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Indicates if the given entity code has been registered against a namespace.
isEntityInConceptDomain(String, String, String, String, AbsoluteCodingSchemeVersionReferenceList, List<String>) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
isEntityInConceptDomain(String, String, String, String, AbsoluteCodingSchemeVersionReferenceList, List<String>) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Determines whether the supplied coded concept exists in a code system in use for the specified concept domain, optionally within specific usage contexts.
isEntityInValueSet(String, URI, String, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
isEntityInValueSet(String, URI, URI, String, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
isEntityInValueSet(String, URI, String, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Determine whether the supplied entity code is a valid entity code somewhere in the supplied value set definition.
isEntityInValueSet(String, URI, URI, String, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Determine whether the supplied entity code is valid in the suppled value set definition, when reconciled against the supplied set of coding scheme versions and/or version tags
isEntryStateIdInAssociationTable(SQLInterface) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Checks if the current Association Table contains the EntryStateId column.
isEntryStateIdInAssociationTable(SQLInterface) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Checks if the current Association Table contains the EntryStateId column.
isEqualVersion(LexGridSchemaVersion) - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Checks if is equal version.
isEqualVersion(LexEvsIndexFormatVersion) - Method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
Checks if is equal version.
isErrorsLogged() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'errorsLogged'.
isExcludeAnonymous() - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Checks if is exclude anonymous.
isExcludeAnonymous() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Checks if is exclude anonymous.
isExhausted - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
isExportValueSetResolution() - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
isFolder() - Method in class edu.mayo.informatics.lexgrid.convert.options.URIOption
 
isFolder() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.URIOption
Checks if is folder.
isForwardMatch(UMLSBaseCode.SABString) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
isForwardName(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return true if directionalName is the forward name of an association for the coding scheme.
isForwardName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return true if directionalName is the forwardName of an association for the coding scheme
isForwardName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return true if directionalName is the forwardName of an association for the coding scheme
isHasBeenEdited() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
isHasIndex() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
isHeaderFilled() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
isHeaderTag(String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
isHierarchicalAssociation(UMLSBaseCode.Association, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Indicates whether the given association is used to represent hierarchical relationships in the source being processed.
isHierarchicalName(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Indicates whether the given name is used to represent hierarchical relationships in the source being processed.
isHierarchicalRelation(String) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
Checks if is hierarchical relation.
isHierarchicalRelation(String) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRootNodeResolver
 
isHydrated() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Checks if is hydrated.
isIgnoredTag(String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
isInclude() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
isIncomplete() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Returns the value of field 'incomplete'.
isInCycle(char[]) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Checks if is in cycle.
isIndexCreatedTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexCreation
 
isIndexNameRegisteredWithTheSystem(String) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
isInferredOrNothing - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
isInUse() - Method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
isInUse() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
isInverseMatch(UMLSBaseCode.SABString) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
isInverseTransitive() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
isIsActive() - Method in class org.LexGrid.commonTypes.Versionable
Returns the value of field 'isActive'.
isIsAnonymous() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'isAnonymous'.
isIsComplete() - Method in class org.LexGrid.LexBIG.DataModel.Core.SupportedElement
Returns the value of field 'isComplete'.
isIsComplete() - Method in class org.LexGrid.versions.EntityVersion
Returns the value of field 'isComplete'.
isIsDBXrefRepform() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isDBXrefRepform'.
isIsDBXrefSource() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isDBXrefSource'.
isIsDefault() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'isDefault'.
isIsDefined() - Method in class org.LexGrid.concepts.Entity
Returns the value of field 'isDefined'.
isIsDefining() - Method in class org.LexGrid.relations.AssociatableElement
Returns the value of field 'isDefining'.
isIsForwardNavigable() - Method in class org.LexGrid.naming.SupportedHierarchy
Returns the value of field 'isForwardNavigable'.
isIsImported() - Method in class org.LexGrid.naming.SupportedCodingScheme
Returns the value of field 'isImported'.
isIsInferred() - Method in class org.LexGrid.relations.AssociatableElement
Returns the value of field 'isInferred'.
isIsMapping() - Method in class org.LexGrid.relations.Relations
Returns the value of field 'isMapping'.
isIsNavigable() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
Returns the value of field 'isNavigable'.
isIsNavigable() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'isNavigable'.
isIsPreferred() - Method in class org.LexGrid.concepts.Definition
Returns the value of field 'isPreferred'.
isIsPreferred() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'isPreferred'.
isIsTransitive() - Method in class org.LexGrid.relations.AssociationEntity
Returns the value of field 'isTransitive'.
isIsTransitiveManaged() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'isTransitiveManaged'.
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
isLabelProperty(Object, String) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
isLeafOnly() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
isLeafOnly() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'leafOnly'.
isLexGridSchemaInstalled() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Checks if is lex grid schema installed.
isLexGridSchemaInstalled() - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Checks if is lex grid schema installed.
isLoaded() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
isLoaded(UMLSBaseCode.Association, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Indicates if the given association matches those currently loaded for the given coding scheme and relations container.
isLoaded(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Indicates if the given association name matches those currently loaded for the given coding scheme and relations container.
isLoading() - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
ISMAP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
indication this is a mappings container.
ISMAP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
ISMAP - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
isMapped(Entity, OntologyFormat) - Static method in class org.lexgrid.exporter.owlrdf.LexRdfMap
 
isMapped(ResolvedConceptReference, OntologyFormat) - Static method in class org.lexgrid.exporter.owlrdf.LexRdfMap
 
isMapped(String, String, OntologyFormat) - Static method in class org.lexgrid.exporter.owlrdf.LexRdfMap
 
isMappingCodingScheme(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension
Checks if is mapping coding scheme.
isMappingCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
isMappingScheme(CodingScheme) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
isMatch(CodingSchemeAliasHolder) - Method in interface org.lexevs.system.service.SystemResourceService.CodingSchemeMatcher
 
isMatchIfNoContext() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
isMatchIfNoContext() - Method in class org.LexGrid.concepts.Presentation
Returns the value of field 'matchIfNoContext'.
isMatchIfNoContext() - Method in class org.LexGrid.valueSets.PickListEntry
Returns the value of field 'matchIfNoContext'.
isMigrateOnStartupEnabled() - Method in class org.lexevs.system.constants.SystemVariables
 
isMultipleSelectionsAllowed() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
 
isMultipleSelectionsAllowed() - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
 
isMysqlUrl(String) - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
isNeedsEntityJoin() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
isNeedsEntityJoin() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
isNodeHasBeenPrinted() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
isNoop(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Indicates whether the given string represents a null or empty resource.
isNoop(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Indicates whether the given string represents a null or empty resource.
isNoopNamespace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Indicates whether the given string defines a resource in a non-operative namespace.
isNoopNamespace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Indicates whether the given string defines a resource in a non-operative namespace.
isNormEnabled() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
isNormEnabled() - Method in class org.lexevs.system.constants.SystemVariables
 
isNotTransitive() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
isNull(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
Compares a string to null, "null" or just with empty string
isNull(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
Compares a string to null, "null" or just with empty string
isNull(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
ISO_MAP_FILE_NAME - Static variable in class org.lexgrid.loader.rrf.factory.IsoMapFactory
The IS o_ ma p_ fil e_ name.
isObsolete - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
isObsolete() - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
isoMap - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
IsoMapFactory - Class in org.lexgrid.loader.rrf.factory
A factory for creating IsoMap objects.
IsoMapFactory() - Constructor for class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
isOverwrite() - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Checks if is overwrite.
isPageNeeded() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Checks if is page needed.
isPageNeeded() - Method in class org.lexevs.paging.AbstractPageableIterator
Checks if is page needed.
isPagerProxied() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
isParent - Variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Used to identify the parent document as opposed to the child document.
isPickListDefinition(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isPickListDefinitionPresent(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
isPickListDefinitionRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isPickListMappings(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isPoolable() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
ISPREF - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
isPreferred - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
isPreferred - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
isPreferredForLanguage() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
isProcessableValue(String) - Method in class org.lexgrid.loader.processor.support.AbstractAssociationQualifierResolver
 
isProcessableValue(String) - Method in class org.lexgrid.loader.processor.support.AbstractPropertyQualifierResolver
 
isProcessableValue(String) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractSuppressPropertyQualifierResolver
 
isProcessableValue(String) - Method in class org.lexgrid.loader.rrf.processor.support.SuppressAssocQualResolver
 
isProcessComplexProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isProcessComplexProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
isProcessComplexProps() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'processComplexProps'.
isProcessConceptsForObjectProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isProcessConceptsForObjectProperties() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
isProcessStrictOWL() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
isProcessStrictOWL() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
isPropertiesPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
isPropertiesPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
isPropertiesPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
isPublishableValueSet(Entity, boolean) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
isQuoteCharacter(char) - Method in class org.lexgrid.loader.rrf.reader.linetokenizer.NoQuotesDelimitedLineTokenizer
Don't treat ANY character as a quote character.
isReadOnly() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
isReady() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
isReady() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
isReady() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
isRefRootOrTail(ConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
isRegisterSupportedAttributes() - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Checks if is register supported attributes.
isRelationsPropertiesPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
isReplaceRelation() - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Checks if is replace relation.
isReplaceRelation() - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Checks if is replace relation.
isReplaceRelation() - Method in interface org.lexgrid.loader.processor.decorator.RootResolvingNodeDecorator
Checks if is replace relation.
isResolverValidForError(String) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
 
isResolverValidForError(String) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.resolution.Resolver
Checks if is resolver valid for error.
isResourceUriFolder() - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
isResourceUriFolder() - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Checks if is resource uri folder.
isRestrictToAnonymous() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
isRestrictToAnonymous() - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Checks if is restrict to anonymous.
isResultsSkipped() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
isRetry() - Method in class org.lexgrid.loader.lexbigadmin.IndexingTasklet
 
isRetry() - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
isRetry() - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
isRetry() - Method in class org.lexgrid.loader.staging.DefaultStagingManager
Checks if is retry.
isReverseName(String, CodingSchemeVersionOrTag, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Return true if directionalName is the reverse name of an association for the coding scheme.
isReverseName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Return true if directionalName is the reverseName of an association for the coding scheme
isReverseName(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.Utility.ConvenienceMethods
Return true if directionalName is the reverseName of an association for the coding scheme
isRevisionInstance(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isRevisionWithFirstChild(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isRevisionWithLastChild(int, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
Checking for optional elements in the Revision meta data
isRootNode(OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Determines if a given concept is a root node or not.
isRootNode(RDFSNamedClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Determines if a given concept is a root node or not.
isRootNode(ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
isRootNode(I) - Method in interface org.lexgrid.loader.processor.support.RootNodeResolver
Checks if is root node.
isRootOrTail(ConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
isRootOrTail(ConceptReference) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.root.RootsResolver
 
isSabValid() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderSabVerifier
 
isSelectable() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
isShouldCodingSchemeSpecificRestriction() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
isSingleTableMode() - Method in class org.lexevs.system.constants.SystemVariables
 
isSingleTableMode() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Checks if is single table mode.
isSingleton() - Method in class org.lexevs.cache.CacheConfigLocationFactory
 
isSingleton() - Method in class org.lexevs.dao.database.access.factory.DaoFactory
 
isSingleton() - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
isSingleton() - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
isSingleton() - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
 
isSingleton() - Method in class org.lexevs.dao.database.prefix.PrefixFactory
 
isSingleton() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
 
isSingleton() - Method in class org.lexevs.dao.database.scheme.CurrentPersistenceSchemeVersionFactory
 
isSingleton() - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
isSingleton() - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
isSingleton() - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
isSingleton() - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
 
isSingleton() - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
 
isSingleton() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
isSingleton() - Method in class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
isSingleton() - Method in class org.lexevs.dao.index.factory.IndexerServiceFactory
 
isSingleton() - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
isSingleton() - Method in class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
isSingleton() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
isSingleton() - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiIndexMetaDataFactory
 
isSingleton() - Method in class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
isSingleton() - Method in class org.lexevs.system.constants.IndividualVariableFactory
 
isSingleton() - Method in class org.lexevs.system.constants.SystemVariablesFactory
 
isSingleton() - Method in class org.lexgrid.loader.logging.LgMessageDirectorIFFactory
 
isSingleton() - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
 
isSingleton() - Method in class org.lexgrid.loader.reader.FactoryBeanReader
 
isSingleton() - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
isSingleton() - Method in class org.lexgrid.loader.rrf.factory.MrsatUsageFactory
 
isSingleton() - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
 
isSkip() - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
isSortAlgorithmValid(String, SortContext) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Checks if is sort algorithm valid.
isSortOptionListValid(SortOptionList) - Static method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
 
isSortValidForClass(Class<?>) - Method in interface org.LexGrid.LexBIG.Extensions.Query.Sort
Checks if this sort is valid for the class.
isSortValidForClass(Class) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
 
isSourceRootNode(String) - Method in class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolver
Construct root node.
isSourceRootNode(String) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
Construct sab root node.
isSourceRootNode(String) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
Construct sab root node.
isSQLLoggingEnabled() - Method in class org.lexevs.system.constants.SystemVariables
 
isStopOnErrors() - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Checks if is stop on errors.
isStrictFocusValidation() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
isStrictOWLImplementation() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Returns the value of field 'strictOWLImplementation'.
isSubSet(URI, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
isSubSet(URI, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Check whether childValueDSetDefinitionURI is a child of parentValueSetDefinitionURI.
isSupplement(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SupplementExtension
Checks if a given coding scheme is a supplement.
isSupplement(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement.SupplementExtensionImpl
 
isSupplement(String, CodingSchemeVersionOrTag) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Checks if a given coding scheme is a supplement.
isSupplement(String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Checks if a given coding scheme is a supplement.
isSystemReleaseCodingSchemeRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isSystemReleasePickListRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isSystemReleaseRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isSystemReleaseRevisionInstance(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isSystemReleaseValueSetRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isSytemRelease(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isTargetToSource() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
isTargetToSource() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'targetToSource'.
isToAdd() - Method in class org.LexGrid.LexOnt.CsmfLocalName
Returns the value of field 'toAdd'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfFormalName
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfText
Returns the value of field 'toOverride'.
isToOverride() - Method in class org.LexGrid.LexOnt.CsmfVersion
Returns the value of field 'toOverride'.
isToUpdate() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Returns the value of field 'toUpdate'.
isToUpdate() - Method in class org.LexGrid.LexOnt.CsmfMappings
Returns the value of field 'toUpdate'.
isToUpdate() - Method in class org.LexGrid.LexOnt.CsmfSource
Returns the value of field 'toUpdate'.
isTransitive(String, String, String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
isTransitive() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
isTransitive(String) - Method in class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
Checks if is transitive.
isTransitiveClosure() - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
isTransitiveClosure() - Method in class org.LexGrid.valueSets.EntityReference
Returns the value of field 'transitiveClosure'.
isTransitiveTableComputed(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
isTransitiveTableComputed(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
isTransitiveTableComputed(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
isTransitiveTableComputed(String, String) - Method in interface org.lexevs.dao.database.operation.transitivity.TransitivityBuilder
 
isTriggeringEvent(LoggingEvent) - Method in class org.lexevs.logging.EmailTrigger
 
isTypeB - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
isUnaddedChildrenPresent() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
isUsed - Variable in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
isUsed() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
isUseTransitive() - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
isValid() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
isValid() - Method in class org.LexGrid.builtins.TsAnyType
Method isValid.
isValid() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method isValid.
isValid() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Describable
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.EntityDescription
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Properties
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Property
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.PropertyQualifier
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Source
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Text
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.Versionable
Method isValid.
isValid() - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
Method isValid.
isValid() - Method in class org.LexGrid.concepts.Comment
Method isValid.
isValid() - Method in class org.LexGrid.concepts.Definition
Method isValid.
isValid() - Method in class org.LexGrid.concepts.Entities
Method isValid.
isValid() - Method in class org.LexGrid.concepts.Entity
Method isValid.
isValid() - Method in class org.LexGrid.concepts.Presentation
Method isValid.
isValid() - Method in class org.LexGrid.concepts.PropertyLink
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfFormalName
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfLocalName
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfMappings
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfSource
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfText
Method isValid.
isValid() - Method in class org.LexGrid.LexOnt.CsmfVersion
Method isValid.
isValid() - Method in class org.LexGrid.naming.Mappings
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedAssociation
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedAssociationQualifier
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedCodingScheme
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedConceptDomain
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedContainerName
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedContext
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedDataType
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedEntityType
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedHierarchy
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedLanguage
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedNamespace
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedProperty
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedPropertyLink
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedPropertyQualifier
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedPropertyType
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedRepresentationalForm
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedSortOrder
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedSource
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedSourceRole
Method isValid.
isValid() - Method in class org.LexGrid.naming.SupportedStatus
Method isValid.
isValid() - Method in class org.LexGrid.naming.URIMap
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociatableElement
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationData
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationEntity
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationPredicate
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationQualification
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationSource
Method isValid.
isValid() - Method in class org.LexGrid.relations.AssociationTarget
Method isValid.
isValid() - Method in class org.LexGrid.relations.Relations
Method isValid.
isValid(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
isValid() - Method in class org.LexGrid.valueSets.CodingSchemeReference
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.DefinitionEntry
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.EntityReference
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListDefinition
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListEntry
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListEntryExclusion
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListEntryNode
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PropertyMatchValue
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.PropertyReference
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
Method isValid.
isValid() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method isValid.
isValid() - Method in class org.LexGrid.versions.ChangedEntry
Method isValid.
isValid() - Method in class org.LexGrid.versions.CodingSchemeVersion
Method isValid.
isValid() - Method in class org.LexGrid.versions.EditHistory
Method isValid.
isValid() - Method in class org.LexGrid.versions.EntityVersion
Method isValid.
isValid() - Method in class org.LexGrid.versions.EntryState
Method isValid.
isValid() - Method in class org.LexGrid.versions.Revision
Method isValid.
isValid() - Method in class org.LexGrid.versions.SystemRelease
Method isValid.
isValidClassForValidator(Class<?>) - Method in class edu.mayo.informatics.lexgrid.convert.validator.AbstractValidator
 
isValidClassForValidator(Class<?>) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.Validator
Checks if is valid class for validator.
isValidDirectory(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAFormatValidator
 
isValidDocumentContent(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBOFormatValidator
 
isValidDocumentHeader(URI) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBOFormatValidator
 
isValidForHCD(AssociatedConcept, String) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Indicates whether the given associated concept contains a qualifier for the given hierarchical context (HCD).
isValidForSAB(AssociatedConcept, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Indicates whether the given associated concept contains a qualifier for the given source abbreviation (SAB).
isValidForSAB(AssociatedConcept, String) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Indicates whether the given associated concept contains a qualifier for the given source abbreviation (SAB).
isValidManifest(URI) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
Performs additional validation to see if the manifest xml file is valid for its schema.
isValidManifest() - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceManifest
 
isValidManifest() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
isValidRevisionId(String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
 
isValueSet(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isValueSetDefinition(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isValueSetDefinition(String, String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
isValueSetDefinition(String, String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Determine if the supplied entity code is of type valueSetDefinition in supplied coding scheme and, if it is, return the true, otherwise return false.
isValueSetDefinitionEntry(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isValueSetDefinitionPresent(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
isValueSetDefinitionRevision(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isValueSetMappings(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isValueSetProperties(Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
isWarningsLogged() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Returns the value of field 'warningsLogged'.
isWrapperFor(Class<?>) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
isWrapperFor(Class<?>) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
isWrapperFor(Class<?>) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
itemClicked(VisualItem, MouseEvent) - Method in class org.LexGrid.LexBIG.gui.displayResults.MyFocusControl
 
itemClicked(VisualItem, MouseEvent) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDMyFocusControl
 
ItemUpdateListener<T> - Interface in org.LexGrid.LexBIG.gui.edit
 
iterateAbsoluteCodingSchemeVersionReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method iterateAbsoluteCodingSchemeVersionReference.
iterateAnyObject() - Method in class org.LexGrid.builtins.TsAnyType
Method iterateAnyObject.
iterateAnyObject() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method iterateAnyObject.
iterateAssoc() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method iterateAssoc.
iterateAssociatedConcept() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method iterateAssociatedConcept.
iterateAssociatedConcept() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
iterateAssociatedData() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method iterateAssociatedData.
iterateAssociation() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method iterateAssociation.
iterateAssociationEntity() - Method in class org.LexGrid.concepts.Entities
Method iterateAssociationEntity.
iterateAssociationNames() - Method in class org.LexGrid.naming.SupportedHierarchy
Method iterateAssociationNames.
iterateAssociationPredicate() - Method in class org.LexGrid.relations.Relations
Method iterateAssociationPredicate.
iterateAssociationQualification() - Method in class org.LexGrid.relations.AssociatableElement
Method iterateAssociationQualification.
iterateChangedEntry() - Method in class org.LexGrid.versions.Revision
Method iterateChangedEntry.
iterateCodedNodeReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method iterateCodedNodeReference.
iterateCodingScheme() - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method iterateCodingScheme.
iterateCodingSchemeRendering() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method iterateCodingSchemeRendering.
iterateCodingSchemeSummary() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method iterateCodingSchemeSummary.
iterateComment() - Method in class org.LexGrid.concepts.Entity
Method iterateComment.
iterateConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method iterateConceptReference.
iterateContext() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method iterateContext.
iterateDefaultPickContext() - Method in class org.LexGrid.valueSets.PickListDefinition
Method iterateDefaultPickContext.
iterateDefinition() - Method in class org.LexGrid.concepts.Entity
Method iterateDefinition.
iterateDefinitionEntry() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method iterateDefinitionEntry.
iterateEntity() - Method in class org.LexGrid.concepts.Entities
Method iterateEntity.
iterateEntityType() - Method in class org.LexGrid.concepts.Entity
Method iterateEntityType.
iterateEntityType() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method iterateEntityType.
iterateEntityVersions() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method iterateEntityVersions.
iterateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method iterateEntry.
iterateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method iterateEntry.
iterateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method iterateEntry.
iterateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method iterateEntry.
iterateEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method iterateEntry.
iterateEntry() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method iterateEntry.
iterateExtensionDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method iterateExtensionDescription.
iterateLocalName() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method iterateLocalName.
iterateLocalName() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method iterateLocalName.
iterateMetadataProperty() - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method iterateMetadataProperty.
iterateModuleDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method iterateModuleDescription.
iterateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method iterateName.
iterateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method iterateName.
iterateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method iterateName.
iterateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method iterateName.
iterateName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method iterateName.
iterateNameAndValue() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method iterateNameAndValue.
iteratePickContext() - Method in class org.LexGrid.valueSets.PickListEntry
Method iteratePickContext.
iteratePickListDefinition() - Method in class org.LexGrid.valueSets.PickListDefinitions
Method iteratePickListDefinition.
iteratePickListEntryNode() - Method in class org.LexGrid.valueSets.PickListDefinition
Method iteratePickListEntryNode.
iteratePresentation() - Method in class org.LexGrid.concepts.Entity
Method iteratePresentation.
iterateProperty() - Method in class org.LexGrid.commonTypes.Properties
Method iterateProperty.
iterateProperty() - Method in class org.LexGrid.concepts.Entity
Method iterateProperty.
iteratePropertyLink() - Method in class org.LexGrid.concepts.Entity
Method iteratePropertyLink.
iteratePropertyQualifier() - Method in class org.LexGrid.commonTypes.Property
Method iteratePropertyQualifier.
iterateRelations() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method iterateRelations.
iterateRepresentsRealmOrContext() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method iterateRepresentsRealmOrContext.
iterateResolvedConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method iterateResolvedConceptReference.
iterateResolvedConceptReference() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
iterateResolvedPickListEntry() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method iterateResolvedPickListEntry.
iterateRestrictToContext() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method iterateRestrictToContext.
iterateRevision() - Method in class org.LexGrid.versions.EditHistory
Method iterateRevision.
iterateSortDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method iterateSortDescription.
iterateSource() - Method in class org.LexGrid.codingSchemes.CodingScheme
Method iterateSource.
iterateSource() - Method in class org.LexGrid.commonTypes.Property
Method iterateSource.
iterateSource() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method iterateSource.
iterateSource() - Method in class org.LexGrid.relations.AssociationPredicate
Method iterateSource.
iterateSource() - Method in class org.LexGrid.valueSets.PickListDefinition
Method iterateSource.
iterateSource() - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method iterateSource.
iterateSupportedAssociation() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedAssociation.
iterateSupportedAssociationQualifier() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedAssociationQualifier.
iterateSupportedCodingScheme() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedCodingScheme.
iterateSupportedConceptDomain() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedConceptDomain.
iterateSupportedContainerName() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedContainerName.
iterateSupportedContext() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedContext.
iterateSupportedDataType() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedDataType.
iterateSupportedDegreeOfFidelity() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedDegreeOfFidelity.
iterateSupportedElement() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method iterateSupportedElement.
iterateSupportedEntityType() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedEntityType.
iterateSupportedHierarchy() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedHierarchy.
iterateSupportedLanguage() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedLanguage.
iterateSupportedNamespace() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedNamespace.
iterateSupportedProperty() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedProperty.
iterateSupportedPropertyLink() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedPropertyLink.
iterateSupportedPropertyQualifier() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedPropertyQualifier.
iterateSupportedPropertyQualifierType() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedPropertyQualifierType.
iterateSupportedPropertyType() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedPropertyType.
iterateSupportedRepresentationalForm() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedRepresentationalForm.
iterateSupportedSortOrder() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedSortOrder.
iterateSupportedSource() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedSource.
iterateSupportedSourceRole() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedSourceRole.
iterateSupportedStatus() - Method in class org.LexGrid.naming.Mappings
Method iterateSupportedStatus.
iterateSystemRelease() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method iterateSystemRelease.
iterateTag() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method iterateTag.
iterateTarget() - Method in class org.LexGrid.relations.AssociationSource
Method iterateTarget.
iterateTargetData() - Method in class org.LexGrid.relations.AssociationSource
Method iterateTargetData.
iterateUsageContext() - Method in class org.LexGrid.commonTypes.Property
Method iterateUsageContext.
iterateUsageContext() - Method in class org.LexGrid.relations.AssociatableElement
Method iterateUsageContext.
iterateValueSetDefinition() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method iterateValueSetDefinition.
iterator() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
iterator() - Method in class org.lexevs.paging.AbstractPageableIterator
 
iterator - Variable in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
IteratorBackedResolvedConceptReferencesIterator - Class in org.LexGrid.LexBIG.Impl.helpers
 
IteratorBackedResolvedConceptReferencesIterator() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
IteratorBackedResolvedConceptReferencesIterator(Iterator<ResolvedConceptReference>) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
IteratorBackedResolvedConceptReferencesIterator(Iterator<ResolvedConceptReference>, int) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 

J

Java5UUIDKeyGenerator - Class in org.lexevs.dao.database.key
The Class Java5UUIDKeyGenerator.
Java5UUIDKeyGenerator() - Constructor for class org.lexevs.dao.database.key.Java5UUIDKeyGenerator
 
Java5UUIDKeyGeneratorTest - Class in org.lexevs.dao.database.key
The Class Java5UUIDKeyGeneratorTest.
Java5UUIDKeyGeneratorTest() - Constructor for class org.lexevs.dao.database.key.Java5UUIDKeyGeneratorTest
 
JdbcDriverBootstrap - Class in org.lexevs.dao.database.utility
The Class JdbcDriverBootstrap.
JdbcDriverBootstrap() - Constructor for class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
JdbcLexEvsTreeDao - Class in org.lexevs.tree.dao
Deprecated.
JdbcLexEvsTreeDao() - Constructor for class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
 
JdbcLexEvsTreeDao - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
The Class JdbcLexEvsTreeDao.
JdbcLexEvsTreeDao() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
 
JdbcMrconsoStagingDao - Class in org.lexgrid.loader.rrf.staging
The Class JdbcMrconsoStagingDao.
JdbcMrconsoStagingDao() - Constructor for class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
 
JdbcMrconsoStagingDaoTest - Class in org.lexgrid.loader.rrf.staging
The Class JdbcMrconsoStagingDaoTest.
JdbcMrconsoStagingDaoTest() - Constructor for class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
 
JobRepositoryManager - Class in org.lexgrid.loader.setup
The Class JobRepositoryManager.
JobRepositoryManager() - Constructor for class org.lexgrid.loader.setup.JobRepositoryManager
 
JobRepositoryManagerTest - Class in org.lexgrid.loader.setup
The Class JobRepositoryManagerTest.
JobRepositoryManagerTest() - Constructor for class org.lexgrid.loader.setup.JobRepositoryManagerTest
 
JsonConverter - Interface in org.lexevs.tree.json
Deprecated.
JsonConverter - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.json
The Interface JsonConverter.
JsonConverterFactory - Class in org.lexevs.tree.json
Deprecated.
JsonConverterFactory() - Constructor for class org.lexevs.tree.json.JsonConverterFactory
Deprecated.
 
JsonConverterFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.json
A factory for creating JsonConverter objects.
JsonConverterFactory() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.json.JsonConverterFactory
 
jTest() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest.Test
 

K

key - Static variable in class org.lexevs.system.utility.CryptoUtility
Internal Key.
KEY_SEPERATOR - Static variable in class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
The KE y_ seperator.
KeyedGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph.utility
 
KeyedGraph(ResolvedConceptReferenceList) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
KeyedGraph(Map<GraphQuery.CodeNamespacePair, AssociatedConcept>) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
KeyIncrementerThreadLocal() - Constructor for class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory.KeyIncrementerThreadLocal
 
KeyNotFoundException - Exception in org.lexgrid.loader.database.key
The Class KeyNotFoundException.
KeyNotFoundException(String, String) - Constructor for exception org.lexgrid.loader.database.key.KeyNotFoundException
Instantiates a new key not found exception.
KeyProvider<I,O> - Interface in org.lexevs.dao.database.key
The Interface KeyProvider.
KeyValueDao - Class in org.lexgrid.loader.staging.dao
The Class KeyValueDao.
KeyValueDao() - Constructor for class org.lexgrid.loader.staging.dao.KeyValueDao
 
KeyValueFieldMapper - Class in org.lexgrid.loader.staging.fieldmapper
The Class KeyValueFieldMapper.
KeyValueFieldMapper() - Constructor for class org.lexgrid.loader.staging.fieldmapper.KeyValueFieldMapper
 
KeyValueFieldSetter - Class in org.lexgrid.loader.staging.fieldsetter
The Class KeyValueFieldSetter.
KeyValueFieldSetter() - Constructor for class org.lexgrid.loader.staging.fieldsetter.KeyValueFieldSetter
 
KeyValuePair - Class in org.lexgrid.loader.staging.support
The Class KeyValuePair.
KeyValuePair() - Constructor for class org.lexgrid.loader.staging.support.KeyValuePair
 
KIND - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
KIND_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
KindDef - Class in org.lexgrid.lexevs.ndfrt.data
 
KindDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.KindDef
 
kinds - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
KnownConceptReference - Class in org.LexGrid.LexBIG.Impl.helpers
This class is used when I want to create a conceptReference that I know doesn't require any translating of the codingScheme.
KnownConceptReference(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.KnownConceptReference
 

L

LANG - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
LANG_ENGLISH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_ENGLISH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
LANG_ENGLISH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
LANG_ENGLISH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
LANG_ENGLISH_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_ENGLISH_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
LANG_FRENCH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_FRENCH_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_GERMAN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_GERMAN_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_LATIN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_LATIN_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_RUSSIAN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_RUSSIAN_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_SPANISH - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_SPANISH_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
LANG_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
LANG_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LANG_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
language - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
language - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
language - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
language - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingProperties
 
LAST_CHARACTER - Static variable in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
The LAS t_ character.
lastItem - Variable in class org.lexgrid.loader.reader.BufferedGroupItemReader
The last item.
lastUpdateDate - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The last update date.
lastUpdateDate - Variable in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
The last update date.
launchJob(Properties, String, String) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
Launch job.
LazyLoadableAssociatedConceptList - Class in org.LexGrid.LexBIG.Impl.pagedgraph.model
The Class LazyLoadableAssociatedConceptList.
LazyLoadableAssociatedConceptList() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
LazyLoadableAssociatedConceptList(int, String, String, String, String, String, String, boolean, boolean, int, int, int, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback, AssociationListBuilder.AssociationDirection, int) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
Instantiates a new lazy loadable associated concept list.
LazyLoadableCodeToReturnTest - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
The Class LazyLoadableCodeToReturnTest.
LazyLoadableCodeToReturnTest() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
 
LazyLoadableEntity - Class in org.lexevs.dao.database.lazyload
The Class LazyLoadableEntity.
LazyLoadableEntity() - Constructor for class org.lexevs.dao.database.lazyload.LazyLoadableEntity
 
LazyLoadableResolvedConceptReferenceList - Class in org.LexGrid.LexBIG.Impl.pagedgraph.model
The Class LazyLoadableAssociatedConceptList.
LazyLoadableResolvedConceptReferenceList() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
LazyLoadableResolvedConceptReferenceList(ValidatedParameterResolvingCallback, String, String, String, boolean, boolean, int, int, boolean, GraphQuery, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, CycleDetectingCallback, PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy, int) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
Instantiates a new lazy loadable associated concept list.
LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator - Class in org.LexGrid.LexBIG.Impl.pagedgraph.model
 
LazyLoadMetaData - Class in org.lexevs.dao.index.lucenesupport
 
LazyLoadMetaData() - Constructor for class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
lazyLoadMetadata() - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
LazyLoadMetaDataTest - Class in org.lexevs.dao.indexer.utility
 
LazyLoadMetaDataTest() - Constructor for class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
LB_GUI - Class in org.LexGrid.LexBIG.gui
This is the GUI application for the LexBIG project.
LB_GUI(String[]) - Constructor for class org.LexGrid.LexBIG.gui.LB_GUI
Instantiates a new GUI with the given command arguments and default LexBIGService.
LB_GUI(String[], LexBIGService) - Constructor for class org.LexGrid.LexBIG.gui.LB_GUI
Instantiates a new GUI with the given command arguments and the given LexBIGService.
lb_gui_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
lb_vd_gui_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
LB_VSD_GUI - Class in org.LexGrid.LexBIG.gui
This is the GUI application for the Value Set and Pick List Definitions.
LB_VSD_GUI(String[]) - Constructor for class org.LexGrid.LexBIG.gui.LB_VSD_GUI
Instantiates a new GUI with the given command arguments and default LexBIGService.
LB_VSD_GUI(String[], LexBIGService) - Constructor for class org.LexGrid.LexBIG.gui.LB_VSD_GUI
Instantiates a new GUI with the given command arguments and the given LexBIGService.
LBConstants - Class in org.LexGrid.LexBIG.Utility
Constants for use in the LexBIG API.
LBConstants() - Constructor for class org.LexGrid.LexBIG.Utility.LBConstants
 
LBConstants.KnownTags - Enum in org.LexGrid.LexBIG.Utility
 
LBConstants.MatchAlgorithms - Enum in org.LexGrid.LexBIG.Utility
 
LBConstants.SortableProperties - Enum in org.LexGrid.LexBIG.Utility
 
LBException - Exception in org.LexGrid.LexBIG.Exceptions
Superclass for checked exceptions declared and thrown by the LexBIG runtime.
LBException(String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBException
 
LBException(String, Throwable) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBException
 
LBInvocationException - Exception in org.LexGrid.LexBIG.Exceptions
The exception to throw when invocation of a LexBIG service fails due to an unexpected problem captured and logged for administrative action.
LBInvocationException(String, String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBInvocationException
 
LBParameterException - Exception in org.LexGrid.LexBIG.Exceptions
The exception to throw when invalid input is provided to a LexBIG service.
LBParameterException(String, String, String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBParameterException
 
LBParameterException(String, String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBParameterException
 
LBParameterException(String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBParameterException
 
LBResourceUnavailableException - Exception in org.LexGrid.LexBIG.Exceptions
Thrown when a resource required by the requested LexBIG operation cannot be located or resolved.
LBResourceUnavailableException(String, Throwable) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBResourceUnavailableException
 
LBResourceUnavailableException(String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBResourceUnavailableException
 
LBRevisionException - Exception in org.LexGrid.LexBIG.Exceptions
 
LBRevisionException(String, Throwable) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBRevisionException
 
LBRevisionException(String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBRevisionException
 
LBRevisionException(Throwable) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBRevisionException
 
LBRuntimeException - Exception in org.LexGrid.LexBIG.Exceptions
Superclass for unchecked exceptions issued by the LexBIG runtime.
LBRuntimeException(String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBRuntimeException
 
LBRuntimeException(String, Throwable) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBRuntimeException
 
lbs - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
The lbs.
lbs - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
The lbs.
lbs - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWLUnitTests
 
LBUnsupportedOperationException - Exception in org.LexGrid.LexBIG.Exceptions
The exception to throw when an unsupported operation is attempted against a LexBIG service.
LBUnsupportedOperationException(String, String) - Constructor for exception org.LexGrid.LexBIG.Exceptions.LBUnsupportedOperationException
 
LDAP_PAGE_SIZE - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
LDAPBase - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Common bits for formats that read or write from ldap.
LDAPBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
ldapPageSize - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
ldapPorts - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
ldapReadUserNames - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
ldapServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
LDAPUtility - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Common tools for LDAP formats.
LDAPUtility() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPUtility
 
ldapWriteUserNames - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
LeadingAndTrailingWildcardSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class LeadingAndTrailingWildcardSearch.
LeadingAndTrailingWildcardSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.LeadingAndTrailingWildcardSearch
 
leavesOfGraph(CodedNodeGraph, boolean, ConceptReference, ValueSetDefinition, HashMap<String, String>, String) - Method in class org.lexgrid.valuesets.helper.DefaultCompiler
Return the leaf nodes for the supplied graph.
level - Variable in class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
LexBIGService - Interface in org.LexGrid.LexBIG.LexBIGService
 
LexBIGServiceConvenienceMethods - Interface in org.LexGrid.LexBIG.Extensions.Generic
Convenience methods to be implemented as a generic extension of the LexBIG API.
LexBIGServiceConvenienceMethods.HierarchyPathResolveOption - Enum in org.LexGrid.LexBIG.Extensions.Generic
 
LexBIGServiceConvenienceMethodsImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
Implementation of the server side convenience methods.
LexBIGServiceConvenienceMethodsImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
LexBIGServiceConvenienceMethodsImplTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
LexBIGServiceConvenienceMethodsImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
LexBIGServiceImpl - Class in org.LexGrid.LexBIG.Impl
Implementation of the LexBIGService Interface.
LexBIGServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
Deprecated.
LexBIGServiceManager - Interface in org.LexGrid.LexBIG.LexBIGService
The service manager provides a single write and update access point for all of a service's content.
LexBIGServiceManagerImpl - Class in org.LexGrid.LexBIG.Impl
This class implements the LexBigServiceManager.
LexBIGServiceManagerImpl() - Constructor for class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
LexBIGServiceMetadata - Interface in org.LexGrid.LexBIG.LexBIGService
Interface to perform system-wide query over metadata for loaded code systems and providers.
LexBIGServiceMetadataImpl - Class in org.LexGrid.LexBIG.Impl
Lucene implementation of the LexBIGServiceMetadata interface.
LexBIGServiceMetadataImpl() - Constructor for class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
LexEVSAuthoringService - Interface in org.LexGrid.LexBIG.LexBIGService
 
LexEVSAuthoringServiceImpl - Class in org.LexGrid.LexBIG.Impl
 
LexEVSAuthoringServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
LexEVSConceptDomainServices - Interface in org.lexgrid.conceptdomain
 
LexEVSConceptDomainServicesImpl - Class in org.lexgrid.conceptdomain.impl
Implements LexEVS Concept Domain API.
LexEVSConceptDomainServicesImpl() - Constructor for class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
LexEvsDaoReader - Class in org.lexgrid.loader.reader
The Class LexEvsDaoReader.
LexEvsDaoReader() - Constructor for class org.lexgrid.loader.reader.LexEvsDaoReader
 
LexEvsDatabaseOperations - Interface in org.lexevs.dao.database.operation
The Interface PersistenceConnectionManager.
LexEvsDatabaseOperations.RootOrTail - Enum in org.lexevs.dao.database.operation
 
LexEvsDatabaseOperations.TraverseAssociations - Enum in org.lexevs.dao.database.operation
 
LexEvsDatabaseSchemaSetup - Interface in org.lexevs.registry.setup
 
LexEvsIndexFormatVersion - Class in org.lexevs.dao.index.version
The Class LexEvsIndexFormatVersion.
LexEvsIndexFormatVersion() - Constructor for class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
 
LexEvsIndexFormatVersionAwareDao - Interface in org.lexevs.dao.index.access
The Interface LexEvsIndexFormatVersionAwareDao.
LexEvsIndexOperations - Interface in org.lexevs.dao.index.operation
The Interface LexEvsIndexOperations.
LexEVSMarshaller - Class in org.lexgrid.valuesets.helper
 
LexEVSMarshaller() - Constructor for class org.lexgrid.valuesets.helper.LexEVSMarshaller
 
LexEvsPathToRootResolver - Class in org.lexevs.tree.dao.pathtoroot
Deprecated.
LexEvsPathToRootResolver() - Constructor for class org.lexevs.tree.dao.pathtoroot.LexEvsPathToRootResolver
Deprecated.
 
LexEvsPathToRootResolver - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot
The Class LexEvsPathToRootResolver.
LexEvsPathToRootResolver() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot.LexEvsPathToRootResolver
 
LexEVSPickListDefinitionServices - Interface in org.lexgrid.valuesets
PickList Services Interface.
LexEVSPickListDefinitionServicesImpl - Class in org.lexgrid.valuesets.impl
Implements LexEVSPickListSerives.
LexEVSPickListDefinitionServicesImpl() - Constructor for class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
LexEVSRelationsValues - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
LexEVSRelationsValues() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
 
LexEVSResolvedValueSetService - Interface in org.lexgrid.resolvedvalueset
 
LexEVSResolvedValueSetServiceImpl - Class in org.lexgrid.resolvedvalueset.impl
 
LexEVSResolvedValueSetServiceImpl() - Constructor for class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
LexEVSResolvedValueSetServiceImpl(AssertedValueSetParameters) - Constructor for class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
LexEVSResolvedValueSetServiceImpl(LexBIGService) - Constructor for class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
LexEvsResourceManagingService - Class in org.lexevs.system.service
The Class LexEvsResourceManagingService.
LexEvsResourceManagingService() - Constructor for class org.lexevs.system.service.LexEvsResourceManagingService
 
LexEvsResourceManagingServiceTest - Class in org.lexevs.system.service
The Class LexEvsResourceManagingServiceTest.
LexEvsResourceManagingServiceTest() - Constructor for class org.lexevs.system.service.LexEvsResourceManagingServiceTest
 
LexEvsSchemaInstallationSetup - Class in org.lexevs.registry.setup
The Class LexEvsSchemaInstallationSetup.
LexEvsSchemaInstallationSetup() - Constructor for class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
 
LexEvsServiceLocator - Class in org.lexevs.locator
The Class LexEvsServiceLocator.
LexEvsServiceLocator() - Constructor for class org.lexevs.locator.LexEvsServiceLocator
 
LexEvsServiceLocator.ApplicationContextCallback - Interface in org.lexevs.locator
 
LexEVSSourceAssertedSearchServices - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
LexEVSSourceAssertedSearchServices(BuildMatchAlgorithmQuery) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.LexEVSSourceAssertedSearchServices
 
LexEvsTree - Class in org.lexevs.tree.model
Deprecated.
LexEvsTree() - Constructor for class org.lexevs.tree.model.LexEvsTree
Deprecated.
 
LexEvsTree - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.model
The Class LexEvsTree.
LexEvsTree() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
 
LexEvsTreeDao - Interface in org.lexevs.tree.dao
Deprecated.
LexEvsTreeDao - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
The Interface LexEvsTreeDao.
LexEvsTreeDao.Direction - Enum in org.lexevs.tree.dao
Deprecated.
The Enum Direction.
LexEvsTreeDao.Direction - Enum in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
The Enum Direction.
LexEVSTreeItem - Class in org.lexevs.dao.database.service.valuesets
 
LexEVSTreeItem(String, String) - Constructor for class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
LexEVSTreeItem(String, String, String) - Constructor for class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
LexEVSTreeItem(String, String, String, String) - Constructor for class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
LexEVSTreeItem(String, String, String, String, String) - Constructor for class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
LexEVSTreeItem.TextComparator - Class in org.lexevs.dao.database.service.valuesets
 
LexEvsTreeNode - Class in org.lexevs.tree.model
Deprecated.
LexEvsTreeNode() - Constructor for class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Instantiates a new lex evs tree node.
LexEvsTreeNode(LexEvsTreeNode) - Constructor for class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
 
LexEvsTreeNode(ChildTreeNodeIterator) - Constructor for class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Instantiates a new lex evs tree node.
LexEvsTreeNode - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.model
The Class LexEvsTreeNode.
LexEvsTreeNode() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Instantiates a new lex evs tree node.
LexEvsTreeNode(LexEvsTreeNode) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
 
LexEvsTreeNode(ChildTreeNodeIterator) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Instantiates a new lex evs tree node.
LexEvsTreeNode.ExpandableStatus - Enum in org.lexevs.tree.model
Deprecated.
The Enum ExpandableStatus.
LexEvsTreeNode.ExpandableStatus - Enum in org.LexGrid.LexBIG.Impl.Extensions.tree.model
The Enum ExpandableStatus.
LexEvsTreeNodeJsonNameSpaceTest - Class in org.lexevs.tree.model
 
LexEvsTreeNodeJsonNameSpaceTest() - Constructor for class org.lexevs.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
LexEvsTreeNodeJsonNameSpaceTest - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.model
 
LexEvsTreeNodeJsonNameSpaceTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
LexEvsTreeNodeRowMapper - Class in org.lexevs.tree.dao.rowmapper
Deprecated.
LexEvsTreeNodeRowMapper() - Constructor for class org.lexevs.tree.dao.rowmapper.LexEvsTreeNodeRowMapper
Deprecated.
 
LexEvsTreeNodeRowMapper - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.rowmapper
The Class LexEvsTreeNodeRowMapper.
LexEvsTreeNodeRowMapper() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.rowmapper.LexEvsTreeNodeRowMapper
 
LexEvsTreeNodeTest - Class in org.lexevs.tree.model
 
LexEvsTreeNodeTest() - Constructor for class org.lexevs.tree.model.LexEvsTreeNodeTest
 
LexEvsTreeNodeTest - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.model
 
LexEvsTreeNodeTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeTest
 
LexEvsTreeTest - Class in org.lexevs.tree.model
 
LexEvsTreeTest() - Constructor for class org.lexevs.tree.model.LexEvsTreeTest
 
LexEvsTreeTest - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.model
 
LexEvsTreeTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeTest
 
LexEVSUsageContextServices - Interface in org.lexgrid.usagecontext
LexEVS Usage Context Services.
LexEVSUsageContextServicesImpl - Class in org.lexgrid.usagecontext.impl
Implementation of LexEVSUsageContextServices.
LexEVSUsageContextServicesImpl() - Constructor for class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
LexEVSValueSetDefinitionServices - Interface in org.lexgrid.valuesets
Value Set Definition Services.
LexEVSValueSetDefinitionServicesImpl - Class in org.lexgrid.valuesets.impl
Implementation of Value Set Definition for LexGrid.
LexEVSValueSetDefinitionServicesImpl() - Constructor for class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
LexEVSVersion - Class in org.LexGrid.LexBIG.Impl
Class that displays the version and timestamp of the last LexEVS service that was built.
LexEVSVersion() - Constructor for class org.LexGrid.LexBIG.Impl.LexEVSVersion
 
LexGrid_Exporter - Interface in org.LexGrid.LexBIG.Extensions.Export
Exports content to LexGrid cononical XML format.
LEXGRID_GENERATED_REVISION - Static variable in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
The Constant LEXGRID_GENERATED_REVISION.
LexGrid_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads content provided in LexGrid cononical XML format.
LEXGRID_TABLE_META_DATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
LexGridBase - Class in org.mayo.edu.lgModel
 
LexGridBase() - Constructor for class org.mayo.edu.lgModel.LexGridBase
 
LexGridConstants - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants
 
LexGridConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LexGridDelimitedText - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading a LexGrid Delimited Text File.
LexGridDelimitedText(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
LexGridDelimitedText() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridDelimitedText
 
LexGridElementProcessor - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LexGridElementProcessor() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
LexGridExport - Class in org.LexGrid.LexBIG.Impl.exporters
Exporter for LexGrid XML files.
LexGridExport() - Constructor for class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
LexGridLDAP - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for connecting to LDAP.
LexGridLDAP(String, String, String, int, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridLDAP
 
LexGridLDAP() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridLDAP
 
LexGridLDAPOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing to ldap.
LexGridLDAPOut(String, String, String, int, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridLDAPOut
 
LexGridLDAPOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridLDAPOut
 
LexGridMappingValues - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
LexGridMappingValues() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexGridMappingValues
 
LexGridMarshalListener - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners
 
LexGridMarshalListener(Marshaller, CodedNodeSet, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
LexGridMarshalListener(Marshaller, CodedNodeGraph, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
LexGridMarshalListener(Marshaller, CodedNodeGraph, CodedNodeSet, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
LexGridMarshalListener(Marshaller, CodedNodeGraph, CodedNodeSet, int, int) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
LexGridMultiLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
LexGridMultiLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
LexGridMultiResolvedValueSetLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
LexGridMultiResolvedValueSetLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiResolvedValueSetLoaderImpl
 
LexGridSchemaCheck - Interface in org.lexevs.dao.database.setup.schemacheck
The Interface LexGridSchemaCheck.
LexGridSchemaCheckFactory - Class in org.lexevs.dao.database.setup.schemacheck
A factory for creating LexGridSchemaCheck objects.
LexGridSchemaCheckFactory() - Constructor for class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
 
LexGridSchemaVersion - Class in org.lexevs.dao.database.schemaversion
The Class LexGridSchemaVersion.
LexGridSchemaVersion() - Constructor for class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
 
LexGridSchemaVersionAwareDao - Interface in org.lexevs.dao.database.access
The Interface LexGridSchemaVersionAwareDao.
LexGridSchemaVersionAwareDao.IndividualDaoCallback<T> - Interface in org.lexevs.dao.database.access
The Interface IndividualDaoCallback.
LexGridSchemaVersionFactory - Class in org.lexevs.dao.database.schemaversion
A factory for creating LexGridSchemaVersion objects.
LexGridSchemaVersionFactory() - Constructor for class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
 
LexGridSchemaVersionTest - Class in org.lexevs.dao.database.schemaversion
The Class LexGridSchemaVersionTest.
LexGridSchemaVersionTest() - Constructor for class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionTest
 
LexGridSQL - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for connecting to SQL.
LexGridSQL(String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
LexGridSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
LexGridSQLLite - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for connecting to SQL Lite.
LexGridSQLLite(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
LexGridSQLLite() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
LexGridSQLLiteOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing to sql lite.
LexGridSQLLiteOut(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
LexGridSQLLiteOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLLiteOut
 
LexGridSQLOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing to SQL.
LexGridSQLOut(String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
LexGridSQLOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridSQLOut
 
LexGridToOwlRdfConverter - Class in org.LexGrid.LexBIG.Impl.exporters
 
LexGridToOwlRdfConverter() - Constructor for class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
lexGridWhiteSpaceIndexSet - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
Default characters to treat as whitespace (in addition to standard whitespace characters). while indexing lexgrid content.
lexGridWhiteSpaceIndexSet - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The lex grid white space index set.
LexGridXML - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading a LexGrid XML file.
LexGridXML(String, CodingSchemeManifest) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
LexGridXML() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridXML
 
LexGridXMLOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing an XML file.
LexGridXMLOut(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
LexGridXMLOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
LexGridXMLProcessor - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LexGridXMLProcessor() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
LexRdf - Class in org.lexgrid.exporter.owlrdf
 
LexRdf() - Constructor for class org.lexgrid.exporter.owlrdf.LexRdf
 
LEXRDF_ASSOCIATION_QUALIFICATION - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_COMMENT - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_DEGREE_OF_FIDELITY - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_IS_DEFINED - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_IS_PREFERRED - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_MATCH_IF_NO_CONTEXT - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_NS_PREFIX - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_NS_URI - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_PROPERTY_LINK - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LEXRDF_REPRESENTATIONAL_FORM - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LexRdfConstants - Class in org.lexgrid.exporter.owlrdf
 
LexRdfConstants() - Constructor for class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LexRdfMap - Class in org.lexgrid.exporter.owlrdf
 
LexRdfMap() - Constructor for class org.lexgrid.exporter.owlrdf.LexRdfMap
 
LG2OBO - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
EMF to OBO Implementation.
LG2OBO(String, String, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.LG2OBO
 
LG_CONFIG_FILE_SYSTEM_VARIABLE - Static variable in class org.lexevs.system.constants.SystemVariables
 
LgAdminFunction - Annotation Type in org.LexGrid.annotations
 
lgBuiltin - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgClientSideSafe - Annotation Type in org.LexGrid.annotations
 
LgCodingSchemeListener - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LgCodingSchemeListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
Constructor initializes service adaptor
LgCodingSchemeListener(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
LgCodingSchemeListener(LgMessageDirectorIF, CodingSchemeManifest) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
lgCommon - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
lgCon - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgConvertException - Exception in edu.mayo.informatics.lexgrid.convert.exceptions
Exception for handling general conversion errors.
LgConvertException() - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.LgConvertException
 
LgConvertException(String, Throwable) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.LgConvertException
 
LgConvertException(Throwable) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.LgConvertException
 
LgConvertException(String) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.LgConvertException
 
lgCS - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgLoggerIF - Interface in org.LexGrid.LexBIG.Utility.logging
 
LgMessageDirectorIF - Interface in edu.mayo.informatics.lexgrid.convert.utility
Interface to help pass debug, error, and warning types of messages around from component to component.
LgMessageDirectorIF - Interface in org.LexGrid.LexBIG.Utility.logging
Interface to help pass debug, error, and warning types of messages around from component to component.
LgMessageDirectorIFFactory - Class in org.lexgrid.loader.logging
 
LgMessageDirectorIFFactory() - Constructor for class org.lexgrid.loader.logging.LgMessageDirectorIFFactory
 
LgMessageDirectorIFFactoryTest - Class in org.lexgrid.loader.logging
 
LgMessageDirectorIFFactoryTest() - Constructor for class org.lexgrid.loader.logging.LgMessageDirectorIFFactoryTest
 
lgNaming - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgPickListListener - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LgPickListListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
LgPickListListener(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
LgProxyClass - Annotation Type in org.LexGrid.annotations
 
lgRel - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgRevisionListener - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LgRevisionListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
LgRevisionListener(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
lgSchemaLocation - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
LgSystemReleaseListener - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LgSystemReleaseListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
LgSystemReleaseListener(LgMessageDirectorIF, ArrayList<SystemReleaseSurvey>) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
LgValueSetListener - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
LgValueSetListener() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
LgValueSetListener(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
lgVD - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
lgVer - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
lgXSI - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
list - Variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
list(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
list(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
listAllConceptDomainEntities(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
listAllConceptDomainEntities(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Gets all the concept domain found in the system as entities.
listAllConceptDomainIds(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.conceptdomain.impl.LexEVSConceptDomainServicesImpl
 
listAllConceptDomainIds(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.conceptdomain.LexEVSConceptDomainServices
Returns all the concept domain identifiers found in the system.
listAllResolvedValueSets() - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
listAllResolvedValueSets() - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a list of coding scheme representations of value sets.
listAllSourceAssertedValueSets() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
listAllSourceAssertedValueSets() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a list of coding scheme representations of value sets.
listAllUsageContextEntities(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
listAllUsageContextEntities(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Gets all the usage context found in the system as entities.
listAllUsageContextIds(String, CodingSchemeVersionOrTag) - Method in class org.lexgrid.usagecontext.impl.LexEVSUsageContextServicesImpl
 
listAllUsageContextIds(String, CodingSchemeVersionOrTag) - Method in interface org.lexgrid.usagecontext.LexEVSUsageContextServices
Returns all the usage context identifiers found in the system.
listBindings(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
listBindings(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
listCodeRelationships(String, String, String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, List<String>, Boolean, boolean) - Method in interface org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao
 
listCodeRelationships(String, String, String, String, String, String, List<String>, List<GraphQuery.QualifierNameValuePair>, List<GraphQuery.CodeNamespacePair>, List<GraphQuery.CodeNamespacePair>, List<String>, List<String>, List<String>, Boolean, boolean) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao
 
listCodeRelationships(String, String, String, String, String, String, String, GraphQuery, boolean) - Method in interface org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService
List code relationships.
listCodeRelationships(String, String, String, String, String, String, String, GraphQuery, boolean) - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
listCodeRelationships(ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
listCodeRelationships(ConceptReference, ConceptReference, int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
listCodeRelationships(ConceptReference, ConceptReference, boolean, ArrayList<Operation>, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
listCodeRelationships(ConceptReference, ConceptReference, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
listCodeRelationships(ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
listCodeRelationships(ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
listCodeRelationships(ConceptReference, ConceptReference, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
listCodeRelationships(ConceptReference, ConceptReference, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return a list of all of the associations in the graph that have the supplied source and target codes or, if directOnly is false, all associations whose transitive closure has the supplied associations.
listCodeRelationships(ConceptReference, ConceptReference, int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return a list of all of the associations in the graph that have the supplied source and target codes based on distance between them.
listCodingSchemes() - Method in interface org.lexevs.dao.index.access.metadata.MetadataDao
 
listCodingSchemes() - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
listCodingSchemes() - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
listCodingSchemes() - Method in interface org.lexevs.dao.index.service.metadata.MetadataIndexService
 
listCodingSchemes() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
listCodingSchemes() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
List the coding schemes that are represented in the metadata index.
ListenerRegistry - Interface in org.lexevs.dao.database.service.event.registry
The Interface ListenerRegistry.
listeners - Variable in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
ListExtensions - Class in org.LexGrid.LexBIG.admin
List registered extensions to the LexBIG runtime.
ListExtensions() - Constructor for class org.LexGrid.LexBIG.admin.ListExtensions
 
ListFilter<T> - Interface in org.lexgrid.loader.processor.support
The Interface ListFilter.
listHelper(ResolvedConceptReferenceList, GNode, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, Filter[], boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
ListHierarchy - Class in org.LexGrid.LexBIG.example
Example showing how to determine and display an unsorted list of root and subsumed nodes, up to a specified depth, for hierarchical relationships.
ListHierarchy() - Constructor for class org.LexGrid.LexBIG.example.ListHierarchy
 
ListHierarchyByCode - Class in org.LexGrid.LexBIG.example
Example showing how to determine and display the hierarchical relationships for a specific code, ancestors or descendants, within a fixed distance.
ListHierarchyByCode() - Constructor for class org.LexGrid.LexBIG.example.ListHierarchyByCode
 
ListHierarchyMetaBySource - Class in org.LexGrid.LexBIG.example
Example showing how to determine and display an unsorted list of root and subsumed nodes, up to a specified depth, for hierarchical relationships.
ListHierarchyMetaBySource() - Constructor for class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
 
ListHierarchyPathToRoot - Class in org.LexGrid.LexBIG.example
Example showing how to determine and display paths from a given concept back to defined root nodes through any hierarchies registered for the coding scheme.
ListHierarchyPathToRoot() - Constructor for class org.LexGrid.LexBIG.example.ListHierarchyPathToRoot
 
ListIdSetter<I> - Interface in org.lexgrid.loader.data.property
The Interface ListIdSetter.
ListLexevsVersion - Class in org.LexGrid.LexBIG.admin
List the LexEVS version number and build timestamp Example: ListLexevsVersion
ListLexevsVersion() - Constructor for class org.LexGrid.LexBIG.admin.ListLexevsVersion
 
listOrphanedMetaData() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
listPickListIds() - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
List pick list ids.
listPickListIds() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
listPickListIds() - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
listPickListIds() - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Returns list of pickListIds that are available in the system.
ListPostProcessorValidatingDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
The Class ListPostProcessorValidatingDecorator.
ListPostProcessorValidatingDecorator(ItemProcessor<List<I>, List<O>>) - Constructor for class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
Instantiates a new list post processor validating decorator.
ListReader<T> - Class in org.lexgrid.loader.reader
The Class ListReader.
ListReader() - Constructor for class org.lexgrid.loader.reader.ListReader
 
listResolvedValueSetForDescription(String) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
 
listResolvedValueSetForDescription(String) - Method in interface org.lexgrid.resolvedvalueset.LexEVSResolvedValueSetService
Returns a fully resolved coding scheme representation of a value set.
listResolvedValueSetForDescription(String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
listResolvedValueSetForDescription(String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetService
Returns a fully resolved coding scheme representation of a value set.
ListRootNodeAddingDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
The Class RootNodeAddingDecorator.
ListRootNodeAddingDecorator(ItemProcessor<I, List<O>>) - Constructor for class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Instantiates a new root node adding decorator.
ListSchemes - Class in org.LexGrid.LexBIG.admin
List all currently registered vocabularies.
ListSchemes() - Constructor for class org.LexGrid.LexBIG.admin.ListSchemes
 
ListToSingleItemProcessorDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
The Class ListToSingleItemProcessorDecorator.
ListToSingleItemProcessorDecorator(ItemProcessor<I, O>) - Constructor for class org.lexgrid.loader.processor.decorator.ListToSingleItemProcessorDecorator
Instantiates a new list to single item processor decorator.
listUnusedDatabases() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
listUnusedIndexes() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
listUnusedMetadata() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
ListValidatorAdapter<I> - Class in org.lexgrid.loader.processor.support.validator
The Class ListValidatorAdapter.
ListValidatorAdapter(Validator<I>) - Constructor for class org.lexgrid.loader.processor.support.validator.ListValidatorAdapter
Instantiates a new list validator adapter.
listValueSetDefinitions(String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
listValueSetDefinitions(String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Return the URI's for the value set definition(s) for the supplied value set definition name.
listValueSetDefinitionURIs() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Lists all the value set definition URIs that are loaded in the system.
listValueSetDefinitionURIs() - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
listValueSetDefinitionURIs() - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
listValueSetDefinitionURIs() - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Lists all the value set definition URIs that are loaded in the system.
listValueSetsWithEntityCode(String, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
listValueSetsWithEntityCode(String, URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Returns all the value set definition uris that contains supplied entity code.
ListWriter<T> - Class in org.lexgrid.loader.writer
The Class ListWriter.
ListWriter() - Constructor for class org.lexgrid.loader.writer.ListWriter
 
LITERAL_AND_REVERSE_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant LITERAL_AND_REVERSE_PREFIX.
LITERAL_AND_REVERSE_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The LITERA l_ an d_ revers e_ propert y_ valu e_ field.
LITERAL_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant LITERAL_PREFIX.
LITERAL_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The LITERA l_ propert y_ valu e_ field.
literalAnalyzer - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The literal analyzer.
LiteralContainsSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class LiteralContainsSearch.
LiteralContainsSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralContainsSearch
 
LiteralSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class LiteralSearch.
LiteralSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSearch
 
LiteralSubStringSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class LiteralSubStringSearch.
LiteralSubStringSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.LiteralSubStringSearch
 
load(LgMessageDirectorIF, URI, URI, String, String, String, String, String, String, String, String, String, Map.Entry<String, Relations>, CodingSchemeManifest) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MrmapToSQL
 
load(URI, LgMessageDirectorIF, boolean, CodingSchemeManifest) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.StreamingXMLToSQL
 
load(URI, String, LoaderPreferences, LgMessageDirectorIF, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextToSQL
Text to SQL Converter.
load() - Method in interface edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces.PreferenceLoader
Returns a generic Preferences object.
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.HL7PreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.MetaPreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OBOPreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OWLPreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.SemNetPreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.UMLSPreferenceLoader
 
load() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.XMLPreferenceLoader
 
Load - Class in org.LexGrid.LexBIG.admin
 
Load() - Constructor for class org.LexGrid.LexBIG.admin.Load
 
load(AbsoluteCodingSchemeVersionReference, Index, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Index.IndexLoader
Load index entries for the designated coding scheme.
load(String, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.ClaML_Loader
 
load(String, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.HL7_Loader
 
load(URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
Load content from a candidate resource.
load(URI) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
 
load(URI, URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedDRA_Loader
Load content from a candidate resource.
load(URI, URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MIFVocabularyLoader
Load content from a candidate resource.
load(URI, URI, String, String, String, String, String, String, String, String, String, Map.Entry<String, Relations>, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MrMap_Loader
User designated target Scheme URI.
load(URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCI_MetaThesaurusLoader
Load content from a candidate resource.
load(URI, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCIHistoryLoader
Load history from a candidate resource.
load(URI, URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OBO_Loader
Load content from a candidate resource.
load(URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OBOHistoryLoader
Load history from a candidate resource.
load(URI, URI, int, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OWL2_Loader
Load content from a candidate resource.
load(URI, URI, int, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OWL_Loader
Load content from a candidate resource.
load(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.ResolvedValueSetDefinitionLoader
 
load(CodingScheme) - Method in interface org.LexGrid.LexBIG.Extensions.Load.SourceAssertedVStoCodingSchemeLoader
 
load(URI, Character, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Text_Loader
Load content from a candidate resource.
load(URI, String, String, String, LocalNameList, int, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Load content from a database repository.
load(URI, String, String, String, LocalNameList, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Load content from a database repository.
load(URI, LocalNameList, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Load content from RRF files.
load(URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLSHistoryLoader
Load history from a candidate resource.
load(URI, URI, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UriBasedHistoryLoader
 
load(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
load(String, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
load(String, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
load(URI, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
load(URI, URI, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
load(URI, URI, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
load(URI, URI, String, String, String, Map.Entry<String, Relations>, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
load(URI, URI, String, String, String, String, String, String, String, String, String, Map.Entry<String, Relations>, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
load(URI, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
load(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
load(URI, URI, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
load(URI, URI, int, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
load(URI, URI, int, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
load(URI, Character, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
load(URI, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
load(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
load(URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
load(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
load(URI, URI, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
load(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, String) - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
load() - Method in class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
Load.
load() - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Load.
load(String, AbsoluteCodingSchemeVersionReferenceList, String, String, String, String) - Method in class org.lexgrid.valuesets.admin.LoadResolvedValueSetDefinition
 
LoadAllDefinitionsToResolvedValueSet - Class in org.lexgrid.valuesets.admin
 
LoadAllDefinitionsToResolvedValueSet() - Constructor for class org.lexgrid.valuesets.admin.LoadAllDefinitionsToResolvedValueSet
 
LoadAllValueSetDefinitionsInDirectory - Class in org.lexgrid.valuesets.admin
 
LoadAllValueSetDefinitionsInDirectory() - Constructor for class org.lexgrid.valuesets.admin.LoadAllValueSetDefinitionsInDirectory
 
LoadAndUpdateSourceAssertedValueSetsTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
LoadAndUpdateSourceAssertedValueSetsTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
loadAndWait() - Method in class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
Load and wait.
loadAuxiliaryData(URI, AbsoluteCodingSchemeVersionReference, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Load auxiliary (non-LexGrid) metadata from the specified XML file into a searchable metadata index within the LexBIG system.
loadAuxiliaryData(Map<Object, Object>, AbsoluteCodingSchemeVersionReference, boolean, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Load auxiliary (non-LexGrid) metadata from the given map into a searchable metadata index within the LexBIG system.
loadAuxiliaryData(URI, AbsoluteCodingSchemeVersionReference, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
loadAuxiliaryData(Map<Object, Object>, AbsoluteCodingSchemeVersionReference, boolean, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
loadClass(String) - Method in class org.lexevs.system.utility.MyClassLoader
 
loadCodingScheme(URI, LgMessageDirectorIF, boolean, CodingSchemeManifest) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
loadCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
loadCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoHistoryTest
 
loadCodingScheme() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
loadContext(UMLSBaseCode.AssociationQualification, boolean, String, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Adds qualification to concepts and associations in the LexGrid repository.
loadContext(UMLSBaseCode.AssociationQualification, boolean, String, int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Adds qualification to concepts and associations in the LexGrid repository.
loadCurrentCodingSchemeTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
loadDefaultSupportedNamespace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadedAssociations_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
The loader interface validates and/or loads content for a service.
loader - Variable in class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell.ButtonUpdater
 
LOADER_IS_DATA_TYPE_PROPERTY - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LOADER_IS_OBJECT_PROPERTY - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
LOADER_POST_PROCESSOR_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
LOADER_PREFERENCE_FILE_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
LoaderConstants - Class in org.lexgrid.loader.constants
The Class LoaderConstants.
LoaderConstants() - Constructor for class org.lexgrid.loader.constants.LoaderConstants
 
LoaderExtensionShell - Class in org.LexGrid.LexBIG.gui.load
The Class LoaderExtensionShell.
LoaderExtensionShell(LB_GUI, Loader) - Constructor for class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell
Instantiates a new loader extension shell.
LoaderExtensionShell(LB_VSD_GUI, Loader, boolean, boolean) - Constructor for class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell
Instantiates a new loader extension shell.
LoaderExtensionShell.ButtonUpdater - Class in org.LexGrid.LexBIG.gui.load
Runnable class to update the buttons when the load finishes.
LoaderPostProcessor - Interface in org.LexGrid.LexBIG.Extensions.Load.postprocessor
The Interface LoaderPostProcessor allows user defined process logic to be injected into a Loader load process in the form of an Extension.
LoaderPostProcessRunner - Class in org.LexGrid.LexBIG.Impl.loaders
The Class LoaderPostProcessRunner.
LoaderPostProcessRunner(LoaderPostProcessor) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.LoaderPostProcessRunner
Instantiates a new loader post process runner.
LoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.LoadPreferences
Class LoaderPreferences.
LoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.LoaderPreferences
 
LoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors
Class LoaderPreferencesDescriptor.
LoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors.LoaderPreferencesDescriptor
 
LoadExportBaseShell - Class in org.LexGrid.LexBIG.gui
This shell allows for loading terminologies into LexBIG, and displays the progress as they load.
LoadExportBaseShell(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
LoadExportBaseShell(LB_VSD_GUI) - Constructor for class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
LoadExportBaseShell.StatusMonitor - Class in org.LexGrid.LexBIG.gui
 
loadFirstValueSetCodingSchemeTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
loadHistoryTable() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
LoadInfileMrconsoStagingTablePopulator - Class in org.lexgrid.loader.rrf.staging.tasklet
The Class LoadInfileMrconsoStagingTablePopulator.
LoadInfileMrconsoStagingTablePopulator() - Constructor for class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
 
loadingPL_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
loadingVD_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
loadLexGridManifest(URI, AbsoluteCodingSchemeVersionReference, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Loads metadata specified by the given manifest to a previously loaded coding scheme in the LexBIG repository.
loadLexGridManifest(CodingSchemeManifest, AbsoluteCodingSchemeVersionReference, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Loads metadata specified by the given manifest to a previously loaded coding scheme in the LexBIG repository.
loadLexGridManifest(CodingSchemeManifest, AbsoluteCodingSchemeVersionReference, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
loadLexGridManifest(URI, AbsoluteCodingSchemeVersionReference, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
LoadLgXML - Class in org.LexGrid.LexBIG.admin
Imports the source file, provided in LexGrid canonical format, to the LexBIG repository.
LoadLgXML() - Constructor for class org.LexGrid.LexBIG.admin.LoadLgXML
 
loadLoaderPreferences() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadLogDebug(String) - Method in class org.lexevs.logging.Logger
 
loadLogDebug(String) - Method in class org.lexevs.logging.SimpleLogger
 
loadLogDebug(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
loadLogError(String, Throwable) - Method in class org.lexevs.logging.Logger
 
loadLogError(String) - Method in class org.lexevs.logging.Logger
 
loadLogError(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
loadLogError(String) - Method in class org.lexevs.logging.SimpleLogger
 
loadLogError(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
loadLogError(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
loadLogWarn(String, Throwable) - Method in class org.lexevs.logging.Logger
 
loadLogWarn(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
loadLogWarn(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
LoadManifest - Class in org.LexGrid.LexBIG.admin
Load manifest data onto the codingscheme based on unique URN and version.
LoadManifest() - Constructor for class org.LexGrid.LexBIG.admin.LoadManifest
 
LoadMedDRA - Class in org.LexGrid.LexBIG.admin
 
LoadMedDRA() - Constructor for class org.LexGrid.LexBIG.admin.LoadMedDRA
 
loadMEDRT(URI) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
Load umls.
loadMEDRT(URI) - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
loadMeta(URI) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
Load meta.
loadMeta(URI) - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
LoadMetaBatchWithMetadata - Class in org.LexGrid.LexBIG.admin
Loads NCI Metathesaurus content, provided as a collection of RRF files in a single directory.
LoadMetaBatchWithMetadata() - Constructor for class org.LexGrid.LexBIG.admin.LoadMetaBatchWithMetadata
 
loadMetadata() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadNCIMetaThesMetadata
 
LoadMetadata - Class in org.LexGrid.LexBIG.admin
Loads optional XML-based metadata to be associated with an existing coding scheme.
LoadMetadata() - Constructor for class org.LexGrid.LexBIG.admin.LoadMetadata
 
LoadMIFVocabulary - Class in org.LexGrid.LexBIG.admin
 
LoadMIFVocabulary() - Constructor for class org.LexGrid.LexBIG.admin.LoadMIFVocabulary
 
LoadMrMap - Class in org.LexGrid.LexBIG.admin
Loads a mappings file(s), provided in UMLS RRF format.
LoadMrMap() - Constructor for class org.LexGrid.LexBIG.admin.LoadMrMap
 
loadMRRANK() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
LoadNCIHistory - Class in org.LexGrid.LexBIG.admin
Imports NCI History data to the LexBIG repository.
LoadNCIHistory() - Constructor for class org.LexGrid.LexBIG.admin.LoadNCIHistory
 
LoadNCIMetaThesMetadata - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
This class loads NCI MetaThesaurus Metadata from RRF files.
LoadNCIMetaThesMetadata(URI, String, String, String, String, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadNCIMetaThesMetadata
 
loadNonPagedItems(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
Load non paged items.
loadNonPagedItems(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
loadNonSourceAssertedValueSetDefinition() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
loadObjects() - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
Load objects.
loadObjects() - Method in class org.lexgrid.loader.meta.hardcodedvalues.MetaHardcodedValuesTasklet
 
loadObjects() - Method in class org.lexgrid.loader.umls.hardcodedvalues.UmlsIntrospectiveHardcodedValues
 
LoadOBO - Class in org.LexGrid.LexBIG.admin
Imports a file specified in the Open Biomedical Ontologies (OBO) format to the LexBIG repository.
LoadOBO() - Constructor for class org.LexGrid.LexBIG.admin.LoadOBO
 
LoadOWL - Class in org.LexGrid.LexBIG.admin
Imports from an OWL-based XML file to the LexBIG repository.
LoadOWL() - Constructor for class org.LexGrid.LexBIG.admin.LoadOWL
 
LoadOWL2 - Class in org.LexGrid.LexBIG.admin
Imports from an OWL-based XML file to the LexBIG repository.
LoadOWL2() - Constructor for class org.LexGrid.LexBIG.admin.LoadOWL2
 
LoadOwlWAssocDefManifest() - Method in class org.lexevs.dao.index.operation.ManifestLoadWithAssociationTest
 
LoadOwlWithConflictingProductionTag() - Method in class org.lexevs.dao.index.operation.ManifestLoadWithAssociationTest
 
loadPickList(PickListDefinition, String, Mappings) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
loadPickList(String, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
loadPickList(PickListDefinition, String, Mappings) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Loads supplied PickListDefinition object
loadPickList(String, boolean) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Loads pick list by reading XML file location supplied
loadPickListDefinition(URI, LgMessageDirectorIF, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
LoadPickListDefinition - Class in org.lexgrid.valuesets.admin
Imports the source file, provided in LexGrid canonical format, to the LexBIG repository.
LoadPickListDefinition() - Constructor for class org.lexgrid.valuesets.admin.LoadPickListDefinition
 
loadPrefs_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadPropertiesFromClasspath(String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Load a properties file from the classpath.
loadPropertiesFromFileOrURL(String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Create a java properties object from a location.
loadRelations(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
High level method with responsibility to map relationship content from UMLS RRF-based format to LexGrid model.
loadRelationsHelper(UMLSBaseCode.Association, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Carry out the mapping of relationships from UMLS RRF-based format to LexGrid model.
loadResolvedValueSet(String, String, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
LoadResolvedValueSetDefinition - Class in org.lexgrid.valuesets.admin
Load the resolved ValueSet Definition Example: java org.lexgrid.valuesets.admin.LoadResolvedValueSetDefinition -u, URN uniquely identifying the ValueSet Definition -l, <id> List of coding scheme versions to use for the resolution in format "csuri1::version1, csuri2::version2" -csSourceTag, Resolves against scheme bearing this tag, eg: development, production" -vsTag, User defined Tag to apply to the resulting resolved value set scheme -vsVersion, Optional user defined version that can be applied to the resolved value set scheme Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection.
LoadResolvedValueSetDefinition() - Constructor for class org.lexgrid.valuesets.admin.LoadResolvedValueSetDefinition
 
loadRevision(URI, LgMessageDirectorIF, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
loadRevision(Revision, String, Boolean) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
Method Loads the revision of an entry point object in lexEVS system.
loadRevision(Versionable, String, Boolean) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
Method Loads an entry point versionable object by wrapping it into a revision.
loadRevision(Revision, String, Boolean) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Method Loads the revision of an entry point object in lexEVS system.
loadRevision(Versionable, String, Boolean) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Method Loads an entry point versionable object by wrapping it into a revision.
LoadRRFToDB - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
This class loads that tables that I need from RRF files into a database.
LoadRRFToDB() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadRRFToDB
 
loadRRFToDB(URI, boolean, boolean, String, String, String, String, LgMessageDirectorIF) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadRRFToDB
 
loadSemnet(URI, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Load content for the UMLS semantic network from files distributed by the NLM (see http://semanticnetwork.nlm.nih.gov/Download/index.html).
loadSourceAssertedValueSetDefinitionsTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
LoadStatus - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Reports the state of LexBIG load operations.
LoadStatus() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
 
LoadStatusDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class LoadStatusDescriptor.
LoadStatusDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.LoadStatusDescriptor
 
loadSupportedAssociationQualifiers(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSupportedLanguages(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSupportedProperties(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSupportedPropertyLinks(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSupportedPropertyQualifiers(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSupportedSources(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
loadSystemRelease(URI, LgMessageDirectorIF, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
loadSystemRelease(SystemRelease, Boolean) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
Load system release.
loadSystemRelease(SystemRelease, Boolean) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Load system release.
loadSystemReleaseCodingSchemeWithNoProperties(Object, Object, ArrayList<SystemReleaseSurvey>) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
loadSystemReleaseCodingSchemeWithProperties(Object, Object, ArrayList<SystemReleaseSurvey>) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
loadSystemReleaseTable() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
LoadTest - Class in org.LexGrid.LexBIG.Impl.test
Class for testing the load framework.
LoadTest() - Constructor for class org.LexGrid.LexBIG.Impl.test.LoadTest
 
LoadText - Class in org.LexGrid.LexBIG.admin
 
LoadText() - Constructor for class org.LexGrid.LexBIG.admin.LoadText
 
loadToRevision(Map.Entry<String, Relations>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
loadUmls(URI, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
Load umls.
loadUmls(URI, String) - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
LoadUmlsBatchWithMetadata - Class in org.LexGrid.LexBIG.admin
Loads UMLS content, provided as a collection of RRF files in a single directory.
LoadUmlsBatchWithMetadata() - Constructor for class org.LexGrid.LexBIG.admin.LoadUmlsBatchWithMetadata
 
loadUMLSHistory(URI) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSHistoryFileToSQL
This method reads the History data from specified metaFolderPath and loads it into the database;
LoadUMLSHistory - Class in org.LexGrid.LexBIG.admin
Loads UMLS History Example: java org.LexGrid.LexBIG.admin.LoadOWL -in,--input <uri> URI or path specifying location of the source file -v, --validate <int> Perform validation of the candidate resource without loading data.
LoadUMLSHistory() - Constructor for class org.LexGrid.LexBIG.admin.LoadUMLSHistory
 
LoadUMLSSemnet - Class in org.LexGrid.LexBIG.admin
Loads the UMLS Semantic Network, provided as a collection of files in a single directory.
LoadUMLSSemnet() - Constructor for class org.LexGrid.LexBIG.admin.LoadUMLSSemnet
 
loadUp() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtilityTest
 
LoadValidationError - Interface in edu.mayo.informatics.lexgrid.convert.validator.error
The Interface LoadValidationError.
LoadValidationError.Severity - Enum in edu.mayo.informatics.lexgrid.convert.validator.error
The Enum Severity.
LoadValidationException - Exception in edu.mayo.informatics.lexgrid.convert.validator.exception
 
LoadValidationException(LoadValidationError) - Constructor for exception edu.mayo.informatics.lexgrid.convert.validator.exception.LoadValidationException
 
loadValueSetDefinition(URI, LgMessageDirectorIF, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
LoadValueSetDefinition - Class in org.lexgrid.valuesets.admin
Imports the source file, provided in LexGrid canonical format, to the LexBIG repository.
LoadValueSetDefinition() - Constructor for class org.lexgrid.valuesets.admin.LoadValueSetDefinition
 
loadValueSetDefinition(ValueSetDefinition, String, Mappings) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
loadValueSetDefinition(String, boolean) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
loadValueSetDefinition(ValueSetDefinition, String, Mappings) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Loads supplied valueSetDefinition object
loadValueSetDefinition(String, boolean) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Loads value set definition by reading XML file location supplied
LOCAL_FULL_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
LOCAL_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
LOCAL_NAME_LIST - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
LocalCodingScheme - Class in org.lexevs.system.model
Holder for coding scheme information that I need to store.
LocalCodingScheme() - Constructor for class org.lexevs.system.model.LocalCodingScheme
 
LocalNameList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class LocalNameList.
LocalNameList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
LocalNameListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class LocalNameListDescriptor.
LocalNameListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.LocalNameListDescriptor
 
localNameListToString(LocalNameList) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
locateAndLoadPropFile(String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Convenience method that combines locatePropFile(fileName) and loadPropertiesFromFileOrURL(String)
locateAndLoadPropFile(String, String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Convenience method that combines locatePropFile(fileName, classToSearchFor) and loadPropertiesFromFileOrURL(String)
locateAndLoadPropFileConfigureLog4J(String, String, String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Convenience method that combines locatePropFile(fileName, classToSearchFor) and loadPropertiesFromFileOrURL(String) and Log4JUtility.configureLog4JFromPathSpecifiedInProperties
locateAndLoadPropFileConfigureLog4J(String, String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Convenience method that combines locatePropFile(fileName, classToSearchFor) and loadPropertiesFromFileOrURL(String) and Log4JUtility.configureLog4JFromPathSpecifiedInProperties
locateMatchingDesignations(CodedNodeSet, String, boolean, String) - Method in interface org.LexGrid.LexBIG.Extensions.Index.Index
Return a coded node set containing all of the nodes that match the supplied criteria.
locateMatchingProperties(CodedNodeSet, LocalNameList, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Index.Index
Return a coded node set containing all of the nodes that match the supplied criteria.
locatePropFile(String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Located the named file on the file system.
locatePropFile(String, String) - Static method in class org.lexevs.system.utility.PropertiesUtility
Located the named file on the file system.
locatePropFile(String, String, LgLoggerIF) - Static method in class org.lexevs.system.utility.PropertiesUtility
 
locator - Variable in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
lock(URNVersionPair) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
lockLockFile() - Method in class org.lexevs.registry.WriteLockManager
Lock lock file.
log - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
log - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQL
 
log - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.LexGridSQLLite
 
log - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
Log(String, String) - Constructor for class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
Log(String, String, boolean) - Constructor for class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
Log(String, String, boolean, String) - Constructor for class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
log - Variable in class org.LexGrid.LexBIG.gui.logging.LogViewer.Log
 
Log4JUtility - Class in org.lexevs.system.utility
Class to aid in configuring log4j
Log4JUtility() - Constructor for class org.lexevs.system.utility.Log4JUtility
 
LogEntry - Class in org.LexGrid.LexBIG.DataModel.Core
Class LogEntry.
LogEntry() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.LogEntry
 
LogEntryDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class LogEntryDescriptor.
LogEntryDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.LogEntryDescriptor
 
logger - Static variable in class edu.mayo.informatics.resourcereader.core.impl.Resource
 
logger - Variable in class edu.mayo.informatics.resourcereader.obo.OBO
 
logger - Variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The logger.
Logger - Class in org.lexevs.logging
All Log message from LexBIG methods should go through this class.
Logger() - Constructor for class org.lexevs.logging.Logger
Instantiates a new logger.
logger - Static variable in class org.lexevs.system.utility.PropertiesUtility
 
logger - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The log.
logger - Static variable in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
logger - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
logger - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
LoggerFactory - Class in org.lexevs.logging
The Class LoggerFactory.
LoggerFactory() - Constructor for class org.lexevs.logging.LoggerFactory
 
LoggerFactory - Class in org.lexgrid.loader.logging
A factory for creating Logger objects.
LoggerFactory() - Constructor for class org.lexgrid.loader.logging.LoggerFactory
 
LoggingBean - Interface in org.lexevs.logging
 
LoggingBean - Class in org.lexgrid.loader.logging
 
LoggingBean() - Constructor for class org.lexgrid.loader.logging.LoggingBean
 
LogLevel - Enum in org.LexGrid.LexBIG.DataModel.Core.types
Enumeration LogLevel.
LogLevelDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.types.descriptors
Class LogLevelDescriptor.
LogLevelDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.types.descriptors.LogLevelDescriptor
 
logMethod() - Method in class org.lexevs.logging.Logger
 
logMethod(Object[]) - Method in class org.lexevs.logging.Logger
 
logMethod() - Method in class org.lexevs.logging.SimpleLogger
 
logMethod(Object[]) - Method in class org.lexevs.logging.SimpleLogger
 
logMethod() - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
logMethod(Object[]) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgLoggerIF
 
logs_ - Variable in class org.LexGrid.LexBIG.gui.logging.LogViewer
 
LogViewer - Class in org.LexGrid.LexBIG.gui.logging
A window to view the log4j log output.
LogViewer(Shell) - Constructor for class org.LexGrid.LexBIG.gui.logging.LogViewer
 
LogViewer.Log - Class in org.LexGrid.LexBIG.gui.logging
 
LogViewerOptions - Class in org.LexGrid.LexBIG.gui.logging
A dialog to configure what log4j writes to the LogViewer window.
LogViewerOptions(LogViewer, Shell) - Constructor for class org.LexGrid.LexBIG.gui.logging.LogViewerOptions
 
LONG - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
lookup(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
lookup(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
lookupLink(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
lookupLink(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
lsiDriver - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
lsiServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
lucene() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
LuceneDirectoryCreator - Interface in org.lexevs.dao.index.lucenesupport
The Interface LuceneDirectoryCreator.
LuceneDirectoryFactory - Class in org.lexevs.dao.index.lucenesupport
 
LuceneDirectoryFactory() - Constructor for class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
LuceneDirectoryFactory.NamedDirectory - Class in org.lexevs.dao.index.lucenesupport
 
LuceneEntity2009Dao - Class in org.lexevs.dao.index.lucene.v2009.entity
The Class LuceneEntity2009Dao.
LuceneEntity2009Dao() - Constructor for class org.lexevs.dao.index.lucene.v2009.entity.LuceneEntity2009Dao
 
LuceneEntityDao - Class in org.lexevs.dao.index.lucene.v2010.entity
The Class LuceneEntityDao.
LuceneEntityDao() - Constructor for class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
LuceneEntityDao.BitSetOp - Enum in org.lexevs.dao.index.lucene.v2010.entity
 
LuceneEntityIndexService - Class in org.lexevs.dao.index.service.entity
The Class LuceneEntityIndexService.
LuceneEntityIndexService() - Constructor for class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
LuceneEntityInsertListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityInsert events.
LuceneEntityInsertListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityInsertListener
 
LuceneEntityPropertyInsertListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityPropertyInsert events.
LuceneEntityPropertyInsertListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityPropertyInsertListener
 
LuceneEntityPropertyRemoveListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityPropertyRemove events.
LuceneEntityPropertyRemoveListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityPropertyRemoveListener
 
LuceneEntityPropertyUpdateListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityPropertyUpdate events.
LuceneEntityPropertyUpdateListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityPropertyUpdateListener
 
LuceneEntityRemoveListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityRemove events.
LuceneEntityRemoveListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityRemoveListener
 
LuceneEntityUpdateListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving luceneEntityUpdate events.
LuceneEntityUpdateListener() - Constructor for class org.lexevs.dao.database.service.listener.LuceneEntityUpdateListener
 
LuceneIndexTemplate - Interface in org.lexevs.dao.index.lucenesupport
 
LuceneLoaderCode - Class in org.lexevs.dao.index.indexer
Base Lucene Loader code.
LuceneLoaderCode() - Constructor for class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
LuceneLoaderCode.Qualifier - Class in org.lexevs.dao.index.indexer
The Class Qualifier.
LuceneLoaderCodeIndexer - Class in org.lexevs.dao.index.indexer
The Class LuceneLoaderCodeIndexer.
LuceneLoaderCodeIndexer() - Constructor for class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Instantiates a new lucene loader code indexer.
LuceneMetadataDao - Class in org.lexevs.dao.index.lucene.v2010.metadata
 
LuceneMetadataDao() - Constructor for class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
LuceneMetadataIndexCreator - Class in org.lexevs.dao.index.indexer
 
LuceneMetadataIndexCreator() - Constructor for class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
LuceneMetadataIndexService - Class in org.lexevs.dao.index.service.metadata
 
LuceneMetadataIndexService() - Constructor for class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
LuceneMultiDirectoryFactory - Class in org.lexevs.dao.index.lucenesupport
 
LuceneMultiDirectoryFactory() - Constructor for class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
LuceneMultiDirectoryFactoryTest - Class in org.lexevs.dao.indexer.utility
 
LuceneMultiDirectoryFactoryTest() - Constructor for class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
LuceneMultiIndexMetaDataFactory - Class in org.lexevs.dao.index.lucenesupport
 
LuceneMultiIndexMetaDataFactory() - Constructor for class org.lexevs.dao.index.lucenesupport.LuceneMultiIndexMetaDataFactory
 
LuceneMultiIndexMetaDataFactoryTest - Class in org.lexevs.dao.indexer.utility
 
LuceneMultiIndexMetaDataFactoryTest() - Constructor for class org.lexevs.dao.indexer.utility.LuceneMultiIndexMetaDataFactoryTest
 
LuceneSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class LuceneSearch.
LuceneSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.LuceneSearch
 
LuceneSearchDao - Class in org.lexevs.dao.index.lucene.v2013.search
The Class LuceneEntityDao.
LuceneSearchDao() - Constructor for class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
LuceneSearchIndexService - Class in org.lexevs.dao.index.service.search
The Class LuceneEntityIndexService.
LuceneSearchIndexService() - Constructor for class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
LuceneWarmUpThread - Class in org.LexGrid.LexBIG.Impl.helpers
Lucene Index warm up thread -- on launch, this will run a sample query to "warm up" various Lucene buffers and caches.
LuceneWarmUpThread() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.LuceneWarmUpThread
 
lui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
LUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 

M

MachesterOWLSyntaxLexGridRenderer - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
MachesterOWLSyntaxLexGridRenderer(OWLOntology, ShortFormProvider) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaML2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLXMLReader
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FindConcept
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.LG2OBO
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGMain
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadRRFToDB
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor.FileFormatter
 
main(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.validator.processor.ReflectionValidationProcessor
The main method.
main(String[]) - Static method in class edu.mayo.informatics.resourcereader.core.ResourceUtils
 
main(String[]) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
main(String[]) - Static method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
main(String[]) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
main(String[]) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOTest
 
main(String[]) - Static method in class org.lexevs.cache.MethodCachingInterceptorTest
The main method.
main(String[]) - Static method in class org.lexevs.cache.MethodCachingProxyTest
The main method.
main(String[]) - Static method in class org.lexevs.dao.database.key.COMBKeyGenerator
 
main(String[]) - Static method in class org.lexevs.dao.database.key.NanoTimeLongKeyGenerator
 
main(String[]) - Static method in class org.lexevs.dao.database.operation.tools.ScriptProducingLauncher
 
main(String[]) - Static method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
main(String...) - Static method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
main(String[]) - Static method in class org.lexevs.dao.index.operation.tools.CleanUpLuceneIndexLauncher
 
main(String[]) - Static method in class org.lexevs.logging.SimpleEmailAppender
The main method.
main(String[]) - Static method in class org.lexevs.paging.AbstractPageableIteratorTest
 
main(String[]) - Static method in class org.lexgrid.exporter.owlrdf.StringHelper
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ActivateScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.BuildAssertedValueSetIndex
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.CleanUpMetadataLauncher
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.DeactivateScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ExportLgXML
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ExportOBO
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ExportOwlRdf
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ListExtensions
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ListLexevsVersion
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.ListSchemes
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.Load
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadLgXML
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadManifest
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadMedDRA
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadMetaBatchWithMetadata
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadMetadata
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadMIFVocabulary
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadMrMap
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadNCIHistory
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadOBO
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadOWL
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadOWL2
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadText
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadUmlsBatchWithMetadata
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadUMLSHistory
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.LoadUMLSSemnet
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.PasswordEncryptor
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RebuildIndex
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RebuildTransitivityTable
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RemoveIndex
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RemoveMetadata
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RemoveScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.RemoveTagScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.SourceAssertedValueSetDefinitionLauncher
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.SupplementScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.TagScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.admin.TransferScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.CheckForConceptInValueSet
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.CheckForValueSetSubSet
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindCodesForDescription
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindDescriptionForCode
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindRelatedCodes
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindRelatedNodesForTermAndAssoc
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.GetAllIncomingConceptsForAssociation
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.GetConceptReferencesClosure
 
main(String[]) - Static method in class org.LexGrid.LexBIG.example.GetResolvedValueSetData
 
main(String[]) - Static method in class org.LexGrid.LexBIG.example.GetTree
 
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ListHierarchy
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ListHierarchyByCode
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ListHierarchyPathToRoot
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.MetaDataSearch
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.MetaMatch
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ProfileScheme
 
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ResolveValueSet
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.ScoreTerm
Program entry point.
main(String[]) - Static method in class org.LexGrid.LexBIG.example.SoundsLike
Entry point for processing.
main(String[]) - Static method in class org.LexGrid.LexBIG.gui.LB_GUI
 
main(String[]) - Static method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.ExportUtility
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionRankTest
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.test.HistoryTests
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.test.HL7MetaDataSearchTest
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.test.LoadTest
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.test.MetaDataSearchTest
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Impl.test.SimpleTests
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
 
main(String[]) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
main(String[]) - Static method in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
main(String[]) - Static method in class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
The main method.
main(String[]) - Static method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
main(String[]) - Static method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
main(String[]) - Static method in class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
The main method.
main(String[]) - Static method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
The main method.
main(String[]) - Static method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
main(String[]) - Static method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
main(String[]) - Static method in class org.LexGrid.util.file.CopyrightFieldScrubber
Program entry point.
main(String[]) - Static method in class org.LexGrid.util.file.CopyrightScrubber
Program entry point.
main(String[]) - Static method in class org.LexGrid.util.SimpleMemUsageReporter
A simple test to make sure the output is sensible
main(String[]) - Static method in class org.LexGrid.util.sql.GenericSQLModifier
 
main(String[]) - Static method in class org.LexGrid.util.sql.lgTables.TransitiveClosure
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.IndexResolvedandAssertedValueSets
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.LoadAllDefinitionsToResolvedValueSet
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.LoadAllValueSetDefinitionsInDirectory
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.LoadPickListDefinition
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.LoadResolvedValueSetDefinition
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.LoadValueSetDefinition
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.RemoveAllResolvedValueSets
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.RemoveAllValueSetDefinitions
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.RemoveResolvedValueSet
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.RemoveValueSetDefinition
 
main(String[]) - Static method in class org.lexgrid.valuesets.admin.RemoveVSResolvedFromCodingSchemes
 
main(String[]) - Static method in class org.lexgrid.valuesets.helper.ValueSetResolutionMD5Generator
 
main(String...) - Static method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
main(String[]) - Static method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetEntityResolver
 
main(String[]) - Static method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
makeBoldLabel(Composite, int, int, String) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeButton(String, Composite, int, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeButton(String, Composite, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeButton(String, Composite, GridData) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeChange(I, T, VersionsDao.EntryStateType, RevisableAbstractDatabaseService.ChangeDatabaseStateTemplate<I, T>) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Make change.
makeCodingSchemeRestriction(AbsoluteCodingSchemeVersionReference) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.MetaDataQuery
 
makeConnections(String, String, String, String, String, String, String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
makeLabel(Composite, String) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeLabel(Composite, String, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makePropertyParentRestriction(String[]) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.MetaDataQuery
 
makePropertyRestriction(String[]) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.MetaDataQuery
 
makeSeperator(Composite, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeStringList(Collection) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
makeText(Composite) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeText(Composite, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeText(Composite, String, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
makeURL(String, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPUtility
 
makeValueRestriction(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.MetaDataQuery
 
makeWordVectorOfSentence(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
makeWrappingLabel(Composite, String, int) - Static method in class org.LexGrid.LexBIG.gui.Utility
 
MANAGE_TRANSITIVE_AND_INVERSE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MANIFEST_FILE_NAME - Static variable in class org.LexGrid.LexBIG.gui.plugin.PluginRetriever
 
MANIFEST_FILE_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
MANIFEST_URI - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
ManifestLoader - Class in org.LexGrid.LexBIG.gui.load
 
ManifestLoader(LB_GUI, AbsoluteCodingSchemeVersionReference) - Constructor for class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
ManifestLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
ManifestLoadWithAssociationTest - Class in org.lexevs.dao.index.operation
 
ManifestLoadWithAssociationTest() - Constructor for class org.lexevs.dao.index.operation.ManifestLoadWithAssociationTest
 
manifestLocation - Variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
manifestLocation_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
manifestNameChange_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
ManifestUtil - Class in edu.mayo.informatics.lexgrid.convert.utility
 
ManifestUtil() - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
map(URI, LoaderPreferences, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaML2LGMain
 
map(Project, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGMain
 
map(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGMain
 
map(String, boolean, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGMain
 
map(LgMessageDirectorIF, MifVocabularyModel) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGMain
 
map(URI, URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGMain
 
map(URI, ResourceManifest, CachingMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGMain
 
map() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGMain
Main entry point for conversion from NCI Thesaurus OWL format to the LexGrid model.
map() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGMain
Main entry point for conversion from NCI Thesaurus OWL format to the LexGrid model.
mapCodeSystemNameToSAB(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Map from the coding scheme name used for identification in the LexGrid model to the UMLS source abbreviation (SAB).
mapCodingSchemeUriAndVersionToUUID(String, String) - Method in interface org.lexevs.dao.database.utility.CodingSchemeIdMapper
Map coding scheme uri and version to uuid.
mapCodingSchemeUriAndVersionToUUID(String, String) - Method in class org.lexevs.dao.database.utility.CodingSchemeUriVersionToUUID
 
mapCUIToCode(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
mapCUIToCodeWithAUI(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrconsoFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrdefFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrdocFieldSetMapper
MRDOC.RRF|Typed key value metadata map|DOCKEY,VALUE,TYPE,EXPL|4|1702|107080|
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrhierFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrrankFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrrelFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrsabFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrsatFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.rrf.fieldmapper.MrstyFieldSetMapper
 
mapFieldSet(FieldSet) - Method in class org.lexgrid.loader.staging.fieldmapper.KeyValueFieldMapper
 
mapGroups() - Method in class org.lexevs.dao.database.ibatis.batch.BatchOrderClassifier
 
mapid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
value of MAPID column from MRMAP.RRF Mapping to AssociationTarget.associationInstanceId
mapMappingSortOptionListToSort(List<MappingExtension.MappingSortOption>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
MapNDFRT2LexEVS - Class in org.lexgrid.lexevs.ndfrt
 
MapNDFRT2LexEVS(URI, LgMessageDirectorIF, boolean) - Constructor for class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
MAPPING_CODING_SCHEME - Static variable in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
MappingAbsoluteCodingSchemeVersionReferences() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
 
MappingCodedNodeDaoFunctionTest - Class in org.lexevs.dao.database.access.codednodegraph
 
MappingCodedNodeDaoFunctionTest() - Constructor for class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
MappingCodingSchemeQueryRegistry - Class in org.LexGrid.LexBIG.Impl.helpers
The Class CodeListFilterRegistry.
MappingExtension - Interface in org.LexGrid.LexBIG.Extensions.Generic
A grouping of Mapping Coding Scheme related functionality.
MappingExtension.Direction - Enum in org.LexGrid.LexBIG.Extensions.Generic
Sort Direction.
MappingExtension.Mapping - Interface in org.LexGrid.LexBIG.Extensions.Generic
A mapping, which may be restricted and resolved.
MappingExtension.Mapping.SearchContext - Enum in org.LexGrid.LexBIG.Extensions.Generic
The Enum SearchContext.
MappingExtension.MappingSortOption - Class in org.LexGrid.LexBIG.Extensions.Generic
Describes a Sort.
MappingExtension.MappingSortOptionName - Enum in org.LexGrid.LexBIG.Extensions.Generic
The Enum MappingSortOptionName.
MappingExtension.QualifierSortOption - Class in org.LexGrid.LexBIG.Extensions.Generic
The Class QualifierSortOption.
MappingExtensionImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class MappingExtensionImpl.
MappingExtensionImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
Instantiates a new mapping extension impl.
MappingExtensionImplTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
MappingExtensionImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
MappingExtensionSerializationTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
MappingExtensionSerializationTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
MappingRelationsUtil - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MappingRelationsUtil() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
MappingResolvedConceptReferenceIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
 
MappingResolvedConceptReferenceIterator() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingResolvedConceptReferenceIterator
 
MappingResolvedConceptReferenceIterator(Iterator<ResolvedConceptReference>, int, boolean, String, String, String, List<MappingExtension.MappingSortOption>, CodedNodeSet, CodedNodeSet, CodedNodeSet, List<CodedNodeSetBackedMapping.RelationshipRestriction>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingResolvedConceptReferenceIterator
 
Mappings - Class in org.LexGrid.naming
A list of all of the local identifiers and defining URI's that are used in the associated resource
Mappings() - Constructor for class org.LexGrid.naming.Mappings
 
MappingsDescriptor - Class in org.LexGrid.naming.descriptors
Class MappingsDescriptor.
MappingsDescriptor() - Constructor for class org.LexGrid.naming.descriptors.MappingsDescriptor
 
MappingSortOption(MappingExtension.MappingSortOptionName, MappingExtension.Direction) - Constructor for class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.MappingSortOption
Instantiates a new mapping sort option.
MappingTripleIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class MappingTripleIterator.
MappingTripleIterator(String, String, String, List<MappingExtension.MappingSortOption>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingTripleIterator
Instantiates a new mapping triple iterator.
MappingTripleParameterBean(String, String, String, String, String, String, String, List<CodedNodeGraphService.Sort>) - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
MappingTripleUidIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class MappingTripleUidIterator.
MappingTripleUidIterator() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingTripleUidIterator
Instantiates a new mapping triple uid iterator.
MappingTripleUidIterator(String, String, String, AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences, List<MappingExtension.MappingSortOption>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingTripleUidIterator
Instantiates a new mapping triple uid iterator.
mapPropertyType(CodedNodeSet.PropertyType) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.RestrictionImplementations
 
mapRela(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Maps from the given UMLS-provided relationship name to a pre-designated LexGrid association name (e.g. map from 'inverse_isa' to 'hasSubtype'), if available.
mapres - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapRow(ResultSet, int) - Method in class org.lexevs.tree.dao.rowmapper.LexEvsTreeNodeRowMapper
Deprecated.
 
mapRow(ResultSet, int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.rowmapper.LexEvsTreeNodeRowMapper
 
maprule - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapsab - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapSABToCodeSystemName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Map from the UMLS source abbreviation (SAB) to the coding scheme name used for identification in the LexGrid model.
mapsetcui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
MAPSETNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
MAPSETNAME - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
MAPSETVERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
MAPSETVERSION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
mapsid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapSortOptionListToSort(SortOptionList) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
mapsubsetid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapSupportedAssociationsHelper(String, String, String, String, Map) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Map the provided information to a new Association and add, if new, add to the given hashtable.
mapTargetsToSource(EntryState, CodingScheme, AssociationSource, AbsoluteCodingSchemeVersionReference, String, String, AssociationTarget[]) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
mapTargetsToSource(EntryState, CodingScheme, AssociationSource, AbsoluteCodingSchemeVersionReference, String, String, AssociationTarget[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Utility method Checks for the existence of a set of targets for a given target.
mapToLexGrid(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAMapToLexGrid
 
maptype - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
mapVSABtoRSAB(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
markLoaded(UMLSBaseCode.Association, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Sets an indication that the given association has been loaded for the given coding scheme and relations container.
markLoaded(String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Sets an indication that the given association has been loaded for the given coding scheme and relations container.
marshal(Writer) - Method in class org.LexGrid.builtins.TsAnyType
 
marshal(ContentHandler) - Method in class org.LexGrid.builtins.TsAnyType
 
marshal(Writer) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
marshal(ContentHandler) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
marshal(Writer) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
marshal(ContentHandler) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Describable
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Describable
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.EntityDescription
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.EntityDescription
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Properties
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Properties
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Property
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Property
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.PropertyQualifier
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.PropertyQualifier
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Source
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Source
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Text
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Text
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.Versionable
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.Versionable
 
marshal(Writer) - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
 
marshal(ContentHandler) - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
 
marshal(Writer) - Method in class org.LexGrid.concepts.Comment
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.Comment
 
marshal(Writer) - Method in class org.LexGrid.concepts.Definition
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.Definition
 
marshal(Writer) - Method in class org.LexGrid.concepts.Entities
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.Entities
 
marshal(Writer) - Method in class org.LexGrid.concepts.Entity
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.Entity
 
marshal(Writer) - Method in class org.LexGrid.concepts.Presentation
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.Presentation
 
marshal(Writer) - Method in class org.LexGrid.concepts.PropertyLink
 
marshal(ContentHandler) - Method in class org.LexGrid.concepts.PropertyLink
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfFormalName
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfFormalName
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfLocalName
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfLocalName
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfMappings
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfMappings
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfSource
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfSource
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfText
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfText
 
marshal(Writer) - Method in class org.LexGrid.LexOnt.CsmfVersion
 
marshal(ContentHandler) - Method in class org.LexGrid.LexOnt.CsmfVersion
 
marshal(Writer) - Method in class org.LexGrid.naming.Mappings
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.Mappings
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedAssociation
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedAssociation
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedAssociationQualifier
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedAssociationQualifier
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedCodingScheme
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedCodingScheme
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedConceptDomain
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedConceptDomain
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedContainerName
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedContainerName
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedContext
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedContext
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedDataType
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedDataType
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedEntityType
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedEntityType
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedHierarchy
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedHierarchy
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedLanguage
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedLanguage
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedNamespace
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedNamespace
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedProperty
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedProperty
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedPropertyLink
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedPropertyLink
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedPropertyQualifier
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedPropertyQualifier
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedPropertyType
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedPropertyType
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedRepresentationalForm
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedRepresentationalForm
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedSortOrder
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedSortOrder
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedSource
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedSource
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedSourceRole
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedSourceRole
 
marshal(Writer) - Method in class org.LexGrid.naming.SupportedStatus
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.SupportedStatus
 
marshal(Writer) - Method in class org.LexGrid.naming.URIMap
 
marshal(ContentHandler) - Method in class org.LexGrid.naming.URIMap
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociatableElement
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociatableElement
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationData
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationData
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationEntity
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationEntity
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationPredicate
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationPredicate
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationQualification
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationQualification
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationSource
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationSource
 
marshal(Writer) - Method in class org.LexGrid.relations.AssociationTarget
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.AssociationTarget
 
marshal(Writer) - Method in class org.LexGrid.relations.Relations
 
marshal(ContentHandler) - Method in class org.LexGrid.relations.Relations
 
marshal(Writer) - Method in class org.LexGrid.valueSets.CodingSchemeReference
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.CodingSchemeReference
 
marshal(Writer) - Method in class org.LexGrid.valueSets.DefinitionEntry
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.DefinitionEntry
 
marshal(Writer) - Method in class org.LexGrid.valueSets.EntityReference
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.EntityReference
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListDefinition
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListDefinition
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListEntry
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListEntry
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListEntryExclusion
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListEntryExclusion
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListEntryNode
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListEntryNode
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PropertyMatchValue
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PropertyMatchValue
 
marshal(Writer) - Method in class org.LexGrid.valueSets.PropertyReference
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.PropertyReference
 
marshal(Writer) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
marshal(Writer) - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
 
marshal(Writer) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
marshal(ContentHandler) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
marshal(Writer) - Method in class org.LexGrid.versions.ChangedEntry
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.ChangedEntry
 
marshal(Writer) - Method in class org.LexGrid.versions.CodingSchemeVersion
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.CodingSchemeVersion
 
marshal(Writer) - Method in class org.LexGrid.versions.EditHistory
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.EditHistory
 
marshal(Writer) - Method in class org.LexGrid.versions.EntityVersion
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.EntityVersion
 
marshal(Writer) - Method in class org.LexGrid.versions.EntryState
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.EntryState
 
marshal(Writer) - Method in class org.LexGrid.versions.Revision
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.Revision
 
marshal(Writer) - Method in class org.LexGrid.versions.SystemRelease
 
marshal(ContentHandler) - Method in class org.LexGrid.versions.SystemRelease
 
marshalToXml(Object, CodedNodeSet, Writer, int) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters.XmlContentWriter
 
marshalToXml(Object, CodedNodeGraph, Writer, int) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters.XmlContentWriter
 
marshalToXml(Object, CodedNodeGraph, CodedNodeSet, Writer, int, boolean, boolean, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters.XmlContentWriter
 
marshalToXml(Object, CodedNodeGraph, CodedNodeSet, int, boolean, boolean, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters.XmlContentWriter
This method exports the data in LexGRID XML format to a PipedWriter which can be read using Reader as it writes.
maskingField - Variable in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSubStringSearch
The masking field.
match(ResolvedConceptReference) - Method in interface org.LexGrid.LexBIG.Extensions.Query.Filter
Indicates whether or not the given reference satisfies criteria for this filter.
match(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
match(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
MATCH_CONCEPT_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_CONCEPT_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_CONCEPT_STATUS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_CONCEPT_STATUS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_INACTIVE_STATUS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_INACTIVE_STATUS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_NOOP_NAMESPACES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_NOOP_NAMESPACES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_ROOT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_ROOT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_XMLREPFORM_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_XMLREPFORM_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_XMLREPFORM_VALUES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_XMLREPFORM_VALUES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_XMLSOURCE_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_XMLSOURCE_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_XMLSOURCE_VALUES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_XMLSOURCE_VALUES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MATCH_XMLTEXT_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MATCH_XMLTEXT_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
matchAlgorithm - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
matchAlgorithm - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingProperties
 
matchAllDocs() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
matchIfNoContext - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
MatchingCode - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the MatchToCode restrictions.
MatchingCode() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.MatchingCode
 
MatchingDesignation - Class in org.LexGrid.LexBIG.gui.restrictions
Holder for the restrictToMatchingDesignation types of restrictions.
MatchingDesignation() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
MatchingProperties - Class in org.LexGrid.LexBIG.gui.restrictions
Holder for the restrictionToMatchingProperties types of restrictions.
MatchingProperties() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.MatchingProperties
 
matchSpell(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Attempt to approximate spelling suggestions.
matchSubquery(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Attempt to approximate compositional or sub-query match (e.g., "peptic ulcer" will match the two separate entries for "peptic" and "ulcer", in case the ontology does not contain any entry matching the full text "peptic ulcer").
matchSynonyms(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Display concepts and related text strings matching the given string.
matchTermCompletion(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Attempt to approximate term completion.
matchText - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
matchText - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingProperties
 
MatchToQuerySort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
ConceptStatus sort which implements the Sort interface.
MatchToQuerySort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
matchWordCompletion(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Attempt to approximate word completion.
MAX_IN_CACHE - Static variable in class org.lexgrid.valuesets.helper.compiler.FileSystemCachingValueSetDefinitionCompilerDecorator
 
MAX_PAGE_SIZE - Static variable in class org.LexGrid.LexBIG.gui.LB_GUI
 
MAX_RECONNECT_ATTEMPTS - Variable in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
maxDocs() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
maxToReturn - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
maxValueSets - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
md_ - Variable in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
md_ - Variable in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
MedDRA2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRA2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
MedDRA2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRA2LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGMain
 
MedDRA_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
 
MedDRA_Metadata - Enum in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRA_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
MedDRAFormatValidator - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRAFormatValidator() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAFormatValidator
 
MedDRAHistoryPropsAndQualsTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRAHistoryPropsAndQualsTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAHistoryPropsAndQualsTest
 
MedDRALoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
MedDRALoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
MedDRAMapToLexGrid - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRAMapToLexGrid(URI, URI, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAMapToLexGrid
 
MedDRARecord_hlgt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_hlgt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
MedDRARecord_hlgt_hlt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_hlgt_hlt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
MedDRARecord_hlt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_hlt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
MedDRARecord_hlt_pt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_hlt_pt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
MedDRARecord_intl_ord - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_intl_ord() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
MedDRARecord_llt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_llt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
MedDRARecord_mdhier - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_mdhier() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
MedDRARecord_meddra_history - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_meddra_history() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
MedDRARecord_meddra_release - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_meddra_release() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
MedDRARecord_pt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_pt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
MedDRARecord_smq_content - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_smq_content() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
MedDRARecord_smq_list - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_smq_list() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
MedDRARecord_soc - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_soc() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
MedDRARecord_soc_hlgt - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_soc_hlgt() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
MedDRARecord_Utils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data
 
MedDRARecord_Utils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
MedDRAToLexGridTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.medDRA
 
MedDRAToLexGridTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAToLexGridTest
 
MedRtBatchLoaderLauncher - Class in org.lexgrid.loader.umls.launch
The Class MedRtUmlsBatchLoaderLauncher.
MedRtBatchLoaderLauncher() - Constructor for class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
 
MedRtCachingSupportedAttributeTemplate - Class in org.lexgrid.loader.dao.template
 
MedRtCachingSupportedAttributeTemplate() - Constructor for class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
 
MedRtEntityAssnsToEntityProcessor<I> - Class in org.lexgrid.loader.processor
 
MedRtEntityAssnsToEntityProcessor() - Constructor for class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
MedRtEntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy - Enum in org.lexgrid.loader.processor
 
MedRTRelationResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsRelationResolver.
MedRTRelationResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
 
MedRtUmlsBatchLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The Interface UmlsBatchLoader.
MedRtUmlsBatchLoaderImpl - Class in org.lexgrid.loader.umls
The Class UmlsBatchLoaderImpl.
MedRtUmlsBatchLoaderImpl() - Constructor for class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
MedRTUmlsCodingSchemeIdSetter - Class in org.lexgrid.loader.umls.data.codingscheme
The Class UmlsCodingSchemeIdSetter.
MedRTUmlsCodingSchemeIdSetter() - Constructor for class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
MEMOPT_ALL_IN_MEMORY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MEMOPT_ALL_IN_MEMORY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MEMOPT_LEXGRID_DIRECT_DB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
MEMOPT_LEXGRID_DIRECT_DB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MEMOPT_NON_STREAMING_PROTEGE_DB_AND_LEXGRID_DIRECT_DB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MEMOPT_STREAMING_PROTEGE_DB_AND_LEXGRID_DIRECT_DB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
MEMORY_SAFE - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
merge(OBOEntity) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
The merge operation would cause all the non null string data elements of entity to overwrite their counterparts in the current instance.
merge(OBORelation) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
mergeURIMappings(Mappings, Mappings) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
message(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.MessageIF
 
message(String, Exception) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.MessageIF
 
message(String, Exception) - Method in class edu.mayo.informatics.lexgrid.convert.utility.MessageRedirector
 
message(String) - Method in class edu.mayo.informatics.lexgrid.convert.utility.MessageRedirector
 
MessageDirector - Class in org.LexGrid.LexBIG.Impl.loaders
A message director to redirect messages as necessary for LexBig.
MessageDirector(String, ProcessStatus) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
MessageIF - Interface in edu.mayo.informatics.lexgrid.convert.utility
Title: MessageIF.java Description: An interface to enable the SQL loading classes to pass messages back about non-fatal issues.
MessageRedirector - Class in edu.mayo.informatics.lexgrid.convert.utility
This class implements the MessageIF as defined in the lexgrid sql plugin - it allows me to catch messages from inside of the sql load process and redirect them to the messaging utilities I use here.
MessageRedirector(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.MessageRedirector
 
messages_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
messages_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
messages_ - Variable in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
META_ASSOC_ENTITY_DESC - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The MET a_ asso c_ entit y_ desc.
META_HL7_METADATA_FILE_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
META_METADATA_FILE_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
META_TOP_LEVEL_SORT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
Meta_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
MetaBatchLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The Interface MetaBatchLoader.
MetaBatchLoaderImpl - Class in org.lexgrid.loader.meta
The Class MetaBatchLoaderImpl.
MetaBatchLoaderImpl() - Constructor for class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
MetaBatchLoaderLauncher - Class in org.lexgrid.loader.meta.launch
The Class UmlsBatchLoaderLauncher.
MetaBatchLoaderLauncher() - Constructor for class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
 
MetaCodingSchemeIdSetter - Class in org.lexgrid.loader.meta.data.codingscheme
The Class MetaCodingSchemeIdSetter.
MetaCodingSchemeIdSetter() - Constructor for class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
MetaCodingSchemeLoadingTasklet - Class in org.lexgrid.loader.meta.tasklet
The Class MetaCodingSchemeProcessor.
MetaCodingSchemeLoadingTasklet() - Constructor for class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
 
MetaCodingSchemeReader - Class in org.lexgrid.loader.meta.reader
NOT THREAD SAFE!.
MetaCodingSchemeReader() - Constructor for class org.lexgrid.loader.meta.reader.MetaCodingSchemeReader
 
MetaData_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads additional data to be maintained and queried as terminology meta-information within the LexBIG system.
MetadataDao - Interface in org.lexevs.dao.index.access.metadata
 
metaDataFileLocation - Variable in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
metaDataFileLocation - Variable in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
MetadataIndexCreator - Interface in org.lexevs.dao.index.indexer
The Interface IndexCreator.
MetadataIndexLocationFactory - Class in org.lexevs.dao.index.factory
 
MetadataIndexLocationFactory() - Constructor for class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
MetadataIndexService - Interface in org.lexevs.dao.index.service.metadata
 
MetaDataIndexTemplate - Class in org.lexevs.dao.index.lucenesupport
 
MetaDataIndexTemplate() - Constructor for class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
MetaDataIndexTemplate(LuceneDirectoryFactory.NamedDirectory) - Constructor for class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
MetaDataIndexTemplate.IndexSearcherCallback<T> - Interface in org.lexevs.dao.index.lucenesupport
 
MetaDataLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading MetaData files into LexBIG.
MetaDataLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.MetaDataLoader
 
MetaDataLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Class to load OBO files.
MetaDataLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
MetadataLoadingTasklet - Class in org.lexgrid.loader.lexbigadmin
The Class MetadataLoadingTasklet.
MetadataLoadingTasklet() - Constructor for class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
 
MetadataProperty - Class in org.LexGrid.LexBIG.DataModel.Core
Reference to a property name and value stored in the coding scheme metadata.
MetadataProperty() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
MetadataPropertyDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class MetadataPropertyDescriptor.
MetadataPropertyDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.MetadataPropertyDescriptor
 
MetadataPropertyList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class MetadataPropertyList.
MetadataPropertyList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
MetadataPropertyListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class MetadataPropertyListDescriptor.
MetadataPropertyListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.MetadataPropertyListDescriptor
 
MetaDataQuery - Class in org.LexGrid.LexBIG.Impl.dataAccess
Class to make Lucene Query snippits for a metadata query.
MetaDataQuery() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.MetaDataQuery
 
MetaDataSearch - Class in org.LexGrid.LexBIG.example
Example how to query stored metadata for a code system.
MetaDataSearch() - Constructor for class org.LexGrid.LexBIG.example.MetaDataSearch
 
MetaDataSearchTest - Class in org.LexGrid.LexBIG.Impl.test
adhoc test class for the metadata searcher.
MetaDataSearchTest() - Constructor for class org.LexGrid.LexBIG.Impl.test.MetaDataSearchTest
 
MetaEntityResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaEntityResolver.
MetaEntityResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaEntityResolver
 
MetaHardcodedValuesTasklet - Class in org.lexgrid.loader.meta.hardcodedvalues
A factory for creating MetaHardcodedValues objects.
MetaHardcodedValuesTasklet() - Constructor for class org.lexgrid.loader.meta.hardcodedvalues.MetaHardcodedValuesTasklet
 
MetaJdbcMrconsoStagingDao - Class in org.lexgrid.loader.meta.staging
 
MetaJdbcMrconsoStagingDao() - Constructor for class org.lexgrid.loader.meta.staging.MetaJdbcMrconsoStagingDao
 
MetaLoaderConstants - Class in org.lexgrid.loader.meta.constants
The Class MetaLoaderConstants.
MetaLoaderConstants() - Constructor for class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
MetaLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences
Class MetaLoaderPreferences.
MetaLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.MetaLoaderPreferences
 
MetaLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors
Class MetaLoaderPreferencesDescriptor.
MetaLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors.MetaLoaderPreferencesDescriptor
 
MetaMatch - Class in org.LexGrid.LexBIG.example
Example attempting to approximate some characteristics of the Metaphrase search algorithm.
MetaMatch() - Constructor for class org.LexGrid.LexBIG.example.MetaMatch
Default constructor.
MetaMrconsoDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MetaMrconsoDiscriminator.
MetaMrconsoDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MetaMrconsoDiscriminator
 
MetaMrconsoEntityCodeResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaMrconsoEntityCodeResolver.
MetaMrconsoEntityCodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrconsoEntityCodeResolver
 
MetaMrconsoIndividualIdSetter - Class in org.lexgrid.loader.meta.data.property
The Class MetaIndividualIdSetter.
MetaMrconsoIndividualIdSetter() - Constructor for class org.lexgrid.loader.meta.data.property.MetaMrconsoIndividualIdSetter
 
MetaMrconsoSourceResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaSourceMultiAttribResolver.
MetaMrconsoSourceResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrconsoSourceResolver
 
MetaMrconsoStagingDao - Interface in org.lexgrid.loader.meta.staging.processor
 
MetaMrdefEntityCodeResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaMrdefEntityCodeResolver.
MetaMrdefEntityCodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrdefEntityCodeResolver
 
MetaMrdefSourceResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaMrdefSourceMultiAttribResolver.
MetaMrdefSourceResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrdefSourceResolver
 
MetaMrrelDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MetaMrrelDiscriminator.
MetaMrrelDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MetaMrrelDiscriminator
 
MetaMrrelEntityCodeResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaMrrelEntityCodeResolver.
MetaMrrelEntityCodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrrelEntityCodeResolver
 
MetaMrrelRelationSkipPolicy - Class in org.lexgrid.loader.meta.reader.support
 
MetaMrrelRelationSkipPolicy() - Constructor for class org.lexgrid.loader.meta.reader.support.MetaMrrelRelationSkipPolicy
 
MetaMrsatAssQualSkipPolicy - Class in org.lexgrid.loader.meta.reader.support
 
MetaMrsatAssQualSkipPolicy() - Constructor for class org.lexgrid.loader.meta.reader.support.MetaMrsatAssQualSkipPolicy
 
MetaMrsatAuiCodePropertyQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatAuiCodePropertyQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatAuiCodePropertyQualifierResolver
 
MetaMrsatEntityCodeResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatEntityCodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatEntityCodeResolver
 
MetaMrsatIndividualIdSetter - Class in org.lexgrid.loader.meta.data.property
 
MetaMrsatIndividualIdSetter() - Constructor for class org.lexgrid.loader.meta.data.property.MetaMrsatIndividualIdSetter
 
MetaMrsatMetauiPropertyQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatMetauiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatMetauiPropertyQualifierResolver
 
MetaMrsatPropertyResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatPropertyResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatPropertyResolver
 
MetaMrsatSourceResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatSourceResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatSourceResolver
 
MetaMrsatStypePropertyQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatStypePropertyQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatStypePropertyQualifierResolver
 
MetaMrsatSuppressPropertyQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrsatSuppressPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrsatSuppressPropertyQualifierResolver
 
MetaMrstyEntityCodeResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaMrdefEntityCodeResolver.
MetaMrstyEntityCodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrstyEntityCodeResolver
 
MetaMrstyIndividualIdSetter - Class in org.lexgrid.loader.meta.data.property
 
MetaMrstyIndividualIdSetter() - Constructor for class org.lexgrid.loader.meta.data.property.MetaMrstyIndividualIdSetter
 
MetaMrstySemanticTypePropertyResolver - Class in org.lexgrid.loader.meta.processor.support
 
MetaMrstySemanticTypePropertyResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaMrstySemanticTypePropertyResolver
 
MetaPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load MetaThesaurus loader preferences from an XML file
MetaPreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.MetaPreferenceLoader
Constructor for creating a MetaPreferenceLoader.
MetaPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.MetaPreferenceLoader
Constructor for creating a MetaPreferenceLoader.
MetaPresentationPropertyResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaPresentationPropertyResolver.
MetaPresentationPropertyResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaPresentationPropertyResolver
 
MetaPropertyLinkResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaPropertyLinkResolver.
MetaPropertyLinkResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
 
MetaRelationResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaRelationResolver.
MetaRelationResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaRelationResolver
 
MetaRootNodeResolver - Class in org.lexgrid.loader.meta.processor.support
The Class UmlsRootNodeResolver.
MetaRootNodeResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolver
 
MetaRootNodeResolverTest - Class in org.lexgrid.loader.meta.processor.support
 
MetaRootNodeResolverTest() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolverTest
 
MetaSourceCodePropertyQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaSourceCodeMultiAttribResolver.
MetaSourceCodePropertyQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaSourceCodePropertyQualifierResolver
 
MetaSourceQualifierResolver - Class in org.lexgrid.loader.meta.processor.support
The Class MetaSourceQualifierResolver.
MetaSourceQualifierResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.MetaSourceQualifierResolver
 
MetaThesaurusLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading NCI MetaThesaurus files into LexBIG.
MetaThesaurusLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.MetaThesaurusLoader
 
MetaThesaurusToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
A tool to load the LexGrid SQL table from UMLS - using the CUI's as the concept codes.
MetaThesaurusToSQL(String, String, String, String, String, String, String, String, String, LoaderPreferences, URI, boolean, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Class to convert from UMLS to SQL.
MetaThesaurusToSQL.QualifierHolder - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Inner class to track keyed references to source qualifiers.
MetaTotalEntityProcessor - Class in org.lexgrid.loader.meta.processor
 
MetaTotalEntityProcessor() - Constructor for class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
metaui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
METAUI_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
metaURN - Static variable in interface org.LexGrid.LexBIG.History.HistoryService
 
MethodCachingInterceptor - Class in org.lexevs.cache
 
MethodCachingInterceptor() - Constructor for class org.lexevs.cache.MethodCachingInterceptor
 
MethodCachingInterceptorTest - Class in org.lexevs.cache
The Class MethodCachingProxyTest.
MethodCachingInterceptorTest() - Constructor for class org.lexevs.cache.MethodCachingInterceptorTest
 
MethodCachingProxy - Class in org.lexevs.cache
The Class MethodCachingProxy.
MethodCachingProxy() - Constructor for class org.lexevs.cache.MethodCachingProxy
 
MethodCachingProxyTest - Class in org.lexevs.cache
The Class MethodCachingProxyTest.
MethodCachingProxyTest() - Constructor for class org.lexevs.cache.MethodCachingProxyTest
 
MifCodeSystem - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifCodeSystem() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
MifCodeSystemVersion - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifCodeSystemVersion() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
MifConcept - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifConcept() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
MifConceptCode - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifConceptCode() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
MifConceptProperty - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifConceptProperty() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
MifConceptRelationship - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifConceptRelationship() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
MifPrintName - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
Object representing the HL7 XML element inside the XML element.
MifPrintName() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
MifSupportedConceptProperty - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifSupportedConceptProperty() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptProperty
 
MifSupportedConceptRelationship - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifSupportedConceptRelationship() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
MifVocabParserHandler - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifVocabParserHandler() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
MifVocabulary2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifVocabulary2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
MifVocabulary2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifVocabulary2LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGMain
 
MifVocabularyHierarchyRootsTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifVocabularyHierarchyRootsTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyHierarchyRootsTestIT
 
MIFVocabularyLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The loader interface validates and/or loads HL7 Model Interchange Format (MIF) sources that are of the VocabularyModel type content for a service.
MIFVocabularyLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
The loader interface validates and/or loads HL7 Model Interchange Format (MIF) sources that are of the VocabularyModel type content for a service.
MIFVocabularyLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
MifVocabularyMapToLexGrid - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
MifVocabularyMapToLexGrid() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyMapToLexGrid
 
MifVocabularyMapToLexGrid(LgMessageDirectorIF, MifVocabularyModel) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyMapToLexGrid
 
MifVocabularyModel - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
Represent information for the HL7 VocabularyModel object as represented in the HL7's coremif XML file.
MifVocabularyModel() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
MinimalRrfRelationResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MinimalRrfRelationResolver.
MinimalRrfRelationResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MinimalRrfRelationResolver
 
MISSING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
MissingResourceException - Exception in org.lexevs.exceptions
An exception to throw when something that is required is not present.
MissingResourceException(String) - Constructor for exception org.lexevs.exceptions.MissingResourceException
Instantiates a new missing resource exception.
MissingResourceException(String, Throwable) - Constructor for exception org.lexevs.exceptions.MissingResourceException
Instantiates a new missing resource exception.
ModifierClassRubricProcessorImpl - Class in edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces
 
ModifierClassRubricProcessorImpl(ClaML, CodingScheme, ModifierClass, ClaMLConfig, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces.ModifierClassRubricProcessorImpl
 
modifyAndCheckOutPreparedStatement(String) - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Modify and check out prepared statement.
modifyAndCheckOutPreparedStatement(String) - Method in class org.lexevs.dao.database.connection.SQLInterface
Modify and check out prepared statement.
modifyAttributes(String, int, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
modifyAttributes(String, ModificationItem[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
modifyAttributes(Name, ModificationItem[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
modifyAttributes(Name, int, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
modifyEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Modify LuceneIndexes for the given list of concept.
modifyEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
modify LuceneIndexes for the given list of concepts.
modifySQL(String, boolean) - Method in class org.LexGrid.util.sql.GenericSQLModifier
 
modifySQL(String) - Method in class org.LexGrid.util.sql.GenericSQLModifier
 
ModuleDescription - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Describes a LexBIG integrated software module.
ModuleDescription() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
 
ModuleDescriptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class ModuleDescriptionDescriptor.
ModuleDescriptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ModuleDescriptionDescriptor
 
ModuleDescriptionList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class ModuleDescriptionList.
ModuleDescriptionList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
ModuleDescriptionListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class ModuleDescriptionListDescriptor.
ModuleDescriptionListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ModuleDescriptionListDescriptor
 
MoreResultsToPageAssociatedConcept - Class in org.LexGrid.LexBIG.gui.displayResults
 
MoreResultsToPageAssociatedConcept() - Constructor for class org.LexGrid.LexBIG.gui.displayResults.MoreResultsToPageAssociatedConcept
 
MR_FLAG - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
Mrconso - Class in org.lexgrid.loader.rrf.model
MrconsoId generated by hbm2java
Mrconso() - Constructor for class org.lexgrid.loader.rrf.model.Mrconso
 
Mrconso(String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrconso
 
MRCONSO - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrconsoAuiIndividualIdSetter - Class in org.lexgrid.loader.umls.data.property
The Class MrconsoAuiIndividualIdSetter.
MrconsoAuiIndividualIdSetter() - Constructor for class org.lexgrid.loader.umls.data.property.MrconsoAuiIndividualIdSetter
 
MrconsoAuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoAuiMultiAttribResolver.
MrconsoAuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoAuiPropertyQualifierResolver
 
MrconsoCuiNumberBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrconsoCuiNumberBasedSkipPolicy.
MrconsoCuiNumberBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrconsoCuiNumberBasedSkipPolicy
 
MrconsoCvfPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoCvfPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoCvfPropertyQualifierResolver
 
MrconsoFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrconsoFieldSetMapper.
MrconsoFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrconsoFieldSetMapper
 
MrconsoFieldSetter - Class in org.lexgrid.loader.rrf.fieldsetter
The Class MrconsoFieldSetter.
MrconsoFieldSetter() - Constructor for class org.lexgrid.loader.rrf.fieldsetter.MrconsoFieldSetter
 
MrconsoGroupEntityProcessor - Class in org.lexgrid.loader.rrf.processor
 
MrconsoGroupEntityProcessor() - Constructor for class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
MrconsoLuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoLuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoLuiPropertyQualifierResolver
 
MrconsoMetaEntityGroupDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMetaEntityGroupDiscriminator.
MrconsoMetaEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrconsoMetaEntityGroupDiscriminator
 
MrconsoMrsatCompositeGroupComparator - Class in org.lexgrid.loader.meta.reader.support
The Class MrrelMrhierCompositeGroupComparator.
MrconsoMrsatCompositeGroupComparator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrconsoMrsatCompositeGroupComparator
 
MrconsoPropertyComparator - Class in org.lexgrid.loader.rrf.data.property
The Class MrconsoPropertyComparator.
MrconsoPropertyComparator() - Constructor for class org.lexgrid.loader.rrf.data.property.MrconsoPropertyComparator
 
mrconsoRepresentationalMap_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
MrconsoSauiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoSauiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoSauiPropertyQualifierResolver
 
MrconsoScuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoScuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoScuiPropertyQualifierResolver
 
MrconsoSduiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoSduiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoSduiPropertyQualifierResolver
 
MrconsoStagingCacheInterceptor - Class in org.lexgrid.loader.rrf.staging.cache.interceptor
The Class MrconsoStagingCacheInterceptor.
MrconsoStagingCacheInterceptor() - Constructor for class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptor
 
MrconsoStagingCacheInterceptorTest - Class in org.lexgrid.loader.rrf.staging.cache.interceptor
The Class MrconsoStagingCacheInterceptorTest.
MrconsoStagingCacheInterceptorTest() - Constructor for class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptorTest
 
MrconsoStagingDao - Interface in org.lexgrid.loader.rrf.staging
The Interface MrconsoStagingDao.
MrconsoSuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoLuiMultiAttribResolver.
MrconsoSuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoSuiPropertyQualifierResolver
 
MrconsoSuppressPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrconsoSuppressPropertyQualifierResolver.
MrconsoSuppressPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrconsoSuppressPropertyQualifierResolver
 
Mrdef - Class in org.lexgrid.loader.rrf.model
MrdefId generated by hbm2java
Mrdef() - Constructor for class org.lexgrid.loader.rrf.model.Mrdef
 
Mrdef(String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrdef
 
MRDEF - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrdefAtuiIndividualIdSetter - Class in org.lexgrid.loader.rrf.data.property
The Class MrdefAtuiIndividualIdSetter.
MrdefAtuiIndividualIdSetter() - Constructor for class org.lexgrid.loader.rrf.data.property.MrdefAtuiIndividualIdSetter
 
MrdefAtuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefAuiMultiAttribResolver.
MrdefAtuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrdefAtuiPropertyQualifierResolver
 
MrdefAuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefAuiMultiAttribResolver.
MrdefAuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrdefAuiPropertyQualifierResolver
 
MrdefCuiNumberBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrrelCuiNumberBasedSkipPolicy.
MrdefCuiNumberBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrdefCuiNumberBasedSkipPolicy
 
MrdefCvfPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefCvfMultiAttribResolver.
MrdefCvfPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrdefCvfPropertyQualifierResolver
 
MrdefFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrdefFieldSetMapper.
MrdefFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrdefFieldSetMapper
 
MrdefIndividualIdSetter - Class in org.lexgrid.loader.umls.data.property
The Class MrdefIndividualIdSetter.
MrdefIndividualIdSetter() - Constructor for class org.lexgrid.loader.umls.data.property.MrdefIndividualIdSetter
 
MrdefMetaEntityGroupDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMetaEntityGroupDiscriminator.
MrdefMetaEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrdefMetaEntityGroupDiscriminator
 
MrdefSabSkipPolicy - Class in org.lexgrid.loader.umls.reader.support
The Class MrdefSabSkipPolicy.
MrdefSabSkipPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.MrdefSabSkipPolicy
 
MrdefSatuiPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefSatuiMultiAttribResolver.
MrdefSatuiPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrdefSatuiPropertyQualifierResolver
 
MrdefSuppressPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefSuppressMultiAttribResolver.
MrdefSuppressPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrdefSuppressPropertyQualifierResolver
 
Mrdoc - Class in org.lexgrid.loader.rrf.model
MrdocId generated by hbm2java
Mrdoc() - Constructor for class org.lexgrid.loader.rrf.model.Mrdoc
 
Mrdoc(String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrdoc
 
MRDOC - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrdocAssociationProcessor - Class in org.lexgrid.loader.rrf.processor
The Class MrdocAssociationProcessor.
MrdocAssociationProcessor() - Constructor for class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
 
MrdocDiscriminator - Class in org.lexgrid.loader.rrf.reader.support
The Class MrdocDiscriminator.
MrdocDiscriminator() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrdocDiscriminator
 
MrdocFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrdocFieldSetMapper.
MrdocFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrdocFieldSetMapper
 
MrdocOnlyAssociationsSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrdocOnlyAssociationsSkipPolicy.
MrdocOnlyAssociationsSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrdocOnlyAssociationsSkipPolicy
 
MrdocRelationNameProcessor - Class in org.lexgrid.loader.rrf.processor
The Class MrdocRelationNameProcessor.
MrdocRelationNameProcessor() - Constructor for class org.lexgrid.loader.rrf.processor.MrdocRelationNameProcessor
 
MrdocRelationNameSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrdocRelationNameSkipPolicy.
MrdocRelationNameSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrdocRelationNameSkipPolicy
 
Mrhier - Class in org.lexgrid.loader.rrf.model
MrhierId generated by hbm2java
Mrhier() - Constructor for class org.lexgrid.loader.rrf.model.Mrhier
 
Mrhier(String, String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrhier
 
MRHIER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MRHIER_OPT - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
MrhierAssocAndPropQualProcessor - Class in org.lexgrid.loader.umls.processor
The Class MrhierAssocAndPropQualProcessor.
MrhierAssocAndPropQualProcessor() - Constructor for class org.lexgrid.loader.umls.processor.MrhierAssocAndPropQualProcessor
 
MrhierFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrhierFieldSetMapper.
MrhierFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrhierFieldSetMapper
 
MrhierHcdPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrdefAuiMultiAttribResolver.
MrhierHcdPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrhierHcdPropertyQualifierResolver
 
MrhierHcdSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrhierHcdSkipPolicy.
MrhierHcdSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrhierHcdSkipPolicy
 
MrhierPtrPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class MrhierPtrMultiAttribResolver.
MrhierPtrPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrhierPtrPropertyQualifierResolver
 
MrMap - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrMap() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
MRMAP2LexGrid - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MRMAP2LexGrid(LgMessageDirectorIF, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
MRMAP2LexGrid(LgMessageDirectorIF, String, String, String, String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
MRMAP2LexGrid(LgMessageDirectorIF, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
MrMap_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Loader class for MrMap and MrSat RRF files resulting in a mapping coding scheme or schemes depending on the content of these files.
MrMapAllTests - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrMapAllTests() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapAllTests
 
MrMapProcessorTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrMapProcessorTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapProcessorTest
 
MrMapQueryTests - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrMapQueryTests() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapQueryTests
 
MrMapReaderTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrMapReaderTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapReaderTest
 
MrmapRRFLoader - Class in org.LexGrid.LexBIG.Impl.loaders
Loader class for MrMap and MrSat RRF files resulting in a mapping coding scheme or schemes depending on the content of these files.
MrmapRRFLoader() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
MrmapToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
 
MrmapToSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.MrmapToSQL
 
Mrrank - Class in org.lexgrid.loader.rrf.model
MrrankId generated by hbm2java
Mrrank() - Constructor for class org.lexgrid.loader.rrf.model.Mrrank
 
Mrrank(String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrrank
 
MRRANK - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MRRANK_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
MRRANK_PROPERTY_QUALIFIER_NAME - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
MrrankFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrrankFieldSetMapper.
MrrankFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrrankFieldSetMapper
 
MrrankPropertyQualifierResolver - Class in org.lexgrid.loader.rrf.processor.support
 
MrrankPropertyQualifierResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrrankPropertyQualifierResolver
 
MrrankUtility - Interface in org.lexgrid.loader.rrf.data.property
The Interface MrrankUtility.
Mrrel - Class in org.lexgrid.loader.rrf.model
MrrelId generated by hbm2java
Mrrel() - Constructor for class org.lexgrid.loader.rrf.model.Mrrel
 
Mrrel(String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrrel
 
MRREL - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrrelAuiPropertyIdResolver - Class in org.lexgrid.loader.rrf.processor.support
 
MrrelAuiPropertyIdResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver
 
MrrelAuiPropertyIdResolver.Aui - Enum in org.lexgrid.loader.rrf.processor.support
 
MrrelAuiResolver - Class in org.lexgrid.loader.rrf.processor.support
 
MrrelAuiResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver
 
MrrelAuiResolver.AuiType - Enum in org.lexgrid.loader.rrf.processor.support
 
MrrelCuiNumberBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrrelCuiNumberBasedSkipPolicy.
MrrelCuiNumberBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrrelCuiNumberBasedSkipPolicy
 
MrrelFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrrelFieldSetMapper.
MrrelFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrrelFieldSetMapper
 
MrrelFilePartitioner - Class in org.lexgrid.loader.rrf.partition
The Class MrrelFilePartitioner.
MrrelFilePartitioner() - Constructor for class org.lexgrid.loader.rrf.partition.MrrelFilePartitioner
 
MrrelFilePartitionerTest - Class in org.lexgrid.loader.rrf.partition
The Class MrrelFilePartitionerTest.
MrrelFilePartitionerTest() - Constructor for class org.lexgrid.loader.rrf.partition.MrrelFilePartitionerTest
 
MrrelMetaEntityGroupDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MrrelMetaEntityGroupDiscriminator.
MrrelMetaEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrrelMetaEntityGroupDiscriminator
 
MrrelMrhierCompositeGroupComparator - Class in org.lexgrid.loader.meta.reader.support
The Class MrrelMrhierCompositeGroupComparator.
MrrelMrhierCompositeGroupComparator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrrelMrhierCompositeGroupComparator
 
MrrelRelationBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
 
MrrelRelationBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrrelRelationBasedSkipPolicy
 
MrrelRuiAssociationInstanceIdResolver - Class in org.lexgrid.loader.rrf.data.association
The Class MrrelRuiKeyResolver.
MrrelRuiAssociationInstanceIdResolver() - Constructor for class org.lexgrid.loader.rrf.data.association.MrrelRuiAssociationInstanceIdResolver
 
MrrelRuiKeyResolverTest - Class in org.lexgrid.loader.rrf.data.association
The Class MrrelRuiKeyResolverTest.
MrrelRuiKeyResolverTest() - Constructor for class org.lexgrid.loader.rrf.data.association.MrrelRuiKeyResolverTest
 
MrrelSabSkipPolicy - Class in org.lexgrid.loader.umls.reader.support
The Class MrrelSabSkipPolicy.
MrrelSabSkipPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.MrrelSabSkipPolicy
 
Mrsab - Class in org.lexgrid.loader.rrf.model
MrsabId generated by hbm2java
Mrsab() - Constructor for class org.lexgrid.loader.rrf.model.Mrsab
 
Mrsab(String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrsab
 
MRSAB - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrsabFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrsabFieldSetMapper.
MrsabFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrsabFieldSetMapper
 
MrsabUtility - Interface in org.lexgrid.loader.rrf.data.codingscheme
The Interface MrsabUtility.
MrSat - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
MrSat() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
Mrsat - Class in org.lexgrid.loader.rrf.model
MrsatId generated by hbm2java
Mrsat() - Constructor for class org.lexgrid.loader.rrf.model.Mrsat
 
Mrsat(String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrsat
 
MRSAT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MRSAT_URI - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
MrsatAssociatinoInstanceKeyResolver - Class in org.lexgrid.loader.database.key
 
MrsatAssociatinoInstanceKeyResolver() - Constructor for class org.lexgrid.loader.database.key.MrsatAssociatinoInstanceKeyResolver
 
MrsatAssocQualSkipPolicy - Class in org.lexgrid.loader.umls.reader.support
 
MrsatAssocQualSkipPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.MrsatAssocQualSkipPolicy
 
MrsatCuiNumberBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrrelCuiNumberBasedSkipPolicy.
MrsatCuiNumberBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrsatCuiNumberBasedSkipPolicy
 
MrsatFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrsatFieldSetMapper.
MrsatFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrsatFieldSetMapper
 
MrsatIndividualIdSetter - Class in org.lexgrid.loader.umls.data.property
The Class MrsatIndividualIdSetter.
MrsatIndividualIdSetter() - Constructor for class org.lexgrid.loader.umls.data.property.MrsatIndividualIdSetter
 
MrsatMetaEntityGroupDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMetaEntityGroupDiscriminator.
MrsatMetaEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrsatMetaEntityGroupDiscriminator
 
MrsatNoCodeSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrsatNoCodeSkipPolicy.
MrsatNoCodeSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrsatNoCodeSkipPolicy
 
MrsatPropertyProcessor - Class in org.lexgrid.loader.umls.processor
The Class MrsatPropertyProcessor.
MrsatPropertyProcessor() - Constructor for class org.lexgrid.loader.umls.processor.MrsatPropertyProcessor
 
MrsatPropertyQualifierSkipPolicy - Class in org.lexgrid.loader.meta.reader.support
 
MrsatPropertyQualifierSkipPolicy() - Constructor for class org.lexgrid.loader.meta.reader.support.MrsatPropertyQualifierSkipPolicy
 
MrsatPropertyResolver - Class in org.lexgrid.loader.umls.processor.support
The Class MrsatPropertyResolver.
MrsatPropertyResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
 
MrsatPropertySkipPolicy - Class in org.lexgrid.loader.meta.reader.support
 
MrsatPropertySkipPolicy() - Constructor for class org.lexgrid.loader.meta.reader.support.MrsatPropertySkipPolicy
 
MrsatRuiAssociationInstanceIdResolver - Class in org.lexgrid.loader.rrf.data.association
 
MrsatRuiAssociationInstanceIdResolver() - Constructor for class org.lexgrid.loader.rrf.data.association.MrsatRuiAssociationInstanceIdResolver
 
MrsatRuiAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
 
MrsatRuiAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.MrsatRuiAssocQualResolver
 
MrsatSkipPolicy - Class in org.lexgrid.loader.umls.reader.support
The Class MrsatSkipPolicy.
MrsatSkipPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.MrsatSkipPolicy
 
MrsatUsageFactory - Class in org.lexgrid.loader.rrf.factory
A factory for creating MrsatUsage objects.
MrsatUsageFactory() - Constructor for class org.lexgrid.loader.rrf.factory.MrsatUsageFactory
 
MrsatUsageFactory.MrsatPropertyTypes - Enum in org.lexgrid.loader.rrf.factory
The Enum MrsatPropertyTypes.
MrsatUtility - Interface in org.lexgrid.loader.rrf.data.property
The Interface MrsatUtility.
Mrsty - Class in org.lexgrid.loader.rrf.model
MrstyId generated by hbm2java
Mrsty() - Constructor for class org.lexgrid.loader.rrf.model.Mrsty
 
Mrsty(String, String, String, String, String, String) - Constructor for class org.lexgrid.loader.rrf.model.Mrsty
 
MRSTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
MrstyCuiNumberBasedSkipPolicy - Class in org.lexgrid.loader.rrf.reader.support
The Class MrrelCuiNumberBasedSkipPolicy.
MrstyCuiNumberBasedSkipPolicy() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrstyCuiNumberBasedSkipPolicy
 
MrstyFieldSetMapper - Class in org.lexgrid.loader.rrf.fieldmapper
The Class MrstyFieldSetMapper.
MrstyFieldSetMapper() - Constructor for class org.lexgrid.loader.rrf.fieldmapper.MrstyFieldSetMapper
 
MrstyGroupDiscriminator - Class in org.lexgrid.loader.rrf.reader.support
The Class MrstyGroupDiscriminator.
MrstyGroupDiscriminator() - Constructor for class org.lexgrid.loader.rrf.reader.support.MrstyGroupDiscriminator
 
MrstyListProcessor - Class in org.lexgrid.loader.umls.processor
The Class MrstyListProcessor.
MrstyListProcessor() - Constructor for class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
MrstyMetaEntityGroupDiscriminator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMetaEntityGroupDiscriminator.
MrstyMetaEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrstyMetaEntityGroupDiscriminator
 
MrstyMrdefCompositeGroupComparator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMrsatCompositeGroupComparator.
MrstyMrdefCompositeGroupComparator() - Constructor for class org.lexgrid.loader.meta.reader.support.MrstyMrdefCompositeGroupComparator
 
MrstyPropertyProcessor - Class in org.lexgrid.loader.umls.processor
The Class MrstyPropertyProcessor.
MrstyPropertyProcessor() - Constructor for class org.lexgrid.loader.umls.processor.MrstyPropertyProcessor
 
MrstySemanticTypePropertyResolver - Class in org.lexgrid.loader.umls.processor.support
The Class MrstyPropertyResolver.
MrstySemanticTypePropertyResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.MrstySemanticTypePropertyResolver
 
MrstyTuiPropertyResolver - Class in org.lexgrid.loader.umls.processor.support
The Class MrstyPropertyResolver.
MrstyTuiPropertyResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.MrstyTuiPropertyResolver
 
MSACCESS_DRIVER - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
MSACCESS_SERVER - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
MultiBaseLuceneIndexTemplate - Class in org.lexevs.dao.index.lucenesupport
 
MultiBaseLuceneIndexTemplate() - Constructor for class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
MultiBaseLuceneIndexTemplate(List<LuceneDirectoryFactory.NamedDirectory>) - Constructor for class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
multiDBModeServers - Static variable in class org.LexGrid.LexBIG.gui.Constants
 
MultiGraphUtility - Class in org.LexGrid.LexBIG.Impl.pagedgraph.utility
 
MultiGraphUtility() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
MultiIndexRegistry - Class in org.lexevs.dao.index.indexregistry
 
MultiIndexRegistry() - Constructor for class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
MultiIndexRegistry.CodingSchemeUriVersionPair - Class in org.lexevs.dao.index.indexregistry
 
MultiIndexTemplateTest - Class in org.lexevs.dao.index.operation
 
MultiIndexTemplateTest() - Constructor for class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
MULTIPLE_TABLES_PREFIX_PLACEHOLDER - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
The Constant PREFIX_PLACEHOLDER.
MultipleNamspaceErrorLEXEVS_598_Test - Class in org.lexevs.tree.service
 
MultipleNamspaceErrorLEXEVS_598_Test() - Constructor for class org.lexevs.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
MultipleNamspaceErrorLEXEVS_598_Test - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.service
 
MultipleNamspaceErrorLEXEVS_598_Test() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
MultipleRelationsRelationResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface MultipleRelationsRelationResolver.
MultiReaderFactory - Class in org.lexevs.dao.index.lucenesupport
 
MultiReaderFactory() - Constructor for class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
MultiValueOption<T> - Interface in org.LexGrid.LexBIG.Extensions.Load.options
The Interface MultiValueOption.
MyClassLoader - Class in org.lexevs.system.utility
My own class loader that defers to a URLClassLoader - picks up any jar files that are present in the runtime folder of a lexbig install - useful for picking up extensions and sql drivers (that aren't on the normal classpath).
MyFocusControl - Class in org.LexGrid.LexBIG.gui.displayResults
Focus Listener for the graph to allow me to back select to a swt list..
MyFocusControl(int, String, DisplayCodedNodeSet) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.MyFocusControl
 
mySqlBatchSize - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
MysqlJdbcUrlAppendingFactory - Class in org.lexevs.dao.database.jdbc
 
MysqlJdbcUrlAppendingFactory() - Constructor for class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
mySqlLikeOverride - Static variable in class org.LexGrid.util.sql.GenericSQLModifier
 
MysqlTableBasedBigIntKeyIncrementer - Class in org.lexevs.dao.database.key.incrementer
The Class MysqlTableBasedBigIntKeyIncrementer.
MysqlTableBasedBigIntKeyIncrementer() - Constructor for class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
 

N

name - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
name - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
name - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.HL7_Loader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MedDRA_Loader
Return the MedDRA text file version that is supported by the loader.
NAME - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
 
NAME - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MIFVocabularyLoader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MrMap_Loader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OBO_Loader
Return the OBO text file version that is supported by the loader.
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OWL2_Loader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.OWL_Loader
 
NAME - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.ResolvedValueSetDefinitionLoader
 
NAME - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.SourceAssertedVStoCodingSchemeLoader
 
name - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.Text_Loader
 
NAME - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
 
name - Static variable in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
name - Static variable in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
name - Static variable in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiResolvedValueSetLoaderImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
Holds the loader name String Constant
name - Static variable in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
name - Variable in class org.lexgrid.lexevs.ndfrt.data.BaseDef
 
NAME - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
name_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
name_ - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
name_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
name_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
NameAndValue - Class in org.LexGrid.LexBIG.DataModel.Core
A simple name/value pair.
NameAndValue() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
 
NameAndValue(String) - Constructor for class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
 
nameAndValueContains(NameAndValue[], String, String) - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Name and value contains.
NameAndValueDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class NameAndValueDescriptor.
NameAndValueDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.NameAndValueDescriptor
 
NameAndValueList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class NameAndValueList.
NameAndValueList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
NameAndValueListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class NameAndValueListDescriptor.
NameAndValueListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NameAndValueListDescriptor
 
NamedDirectory(Directory, String) - Constructor for class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
namespace - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
namespace - Variable in class org.lexgrid.lexevs.ndfrt.data.BaseDef
 
NAMESPACE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
NAMESPACE_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
NamespaceHandler - Interface in org.LexGrid.LexBIG.Impl.namespace
 
NamespaceHandlerFactory - Class in org.LexGrid.LexBIG.Impl.namespace
 
NamespaceHandlerFactory() - Constructor for class org.LexGrid.LexBIG.Impl.namespace.NamespaceHandlerFactory
 
NamespaceSizeValidator - Class in org.lexgrid.loader.processor.support.validator
The Class NamespaceSizeValidator.
NamespaceSizeValidator() - Constructor for class org.lexgrid.loader.processor.support.validator.NamespaceSizeValidator
 
NanoTimeLongKeyGenerator - Class in org.lexevs.dao.database.key
The Class NanoTimeLongKeyGenerator.
NanoTimeLongKeyGenerator() - Constructor for class org.lexevs.dao.database.key.NanoTimeLongKeyGenerator
 
nativeSQL(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
NCI_MetaThesaurusLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads the complete NCI MetaThesaurus.
NCI_THESAURUS_HISTORY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
NCIChangeEvent - Class in org.LexGrid.LexBIG.DataModel.NCIHistory
A change event as documented in ftp://ftp1.nci.nih.gov/pub/cacore/EVS/ReadMe_history.txt.
NCIChangeEvent() - Constructor for class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
 
NCIChangeEventDescriptor - Class in org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors
Class NCIChangeEventDescriptor.
NCIChangeEventDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors.NCIChangeEventDescriptor
 
NCIChangeEventList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class NCIChangeEventList.
NCIChangeEventList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
NCIChangeEventListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class NCIChangeEventListDescriptor.
NCIChangeEventListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.NCIChangeEventListDescriptor
 
NCIHistoryChangeTypeTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
 
NCIHistoryChangeTypeTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.NCIHistoryChangeTypeTypeHandler
 
NciHistoryDao - Interface in org.lexevs.dao.database.access.ncihistory
 
NCIHistoryLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
A loader that takes the delimited NCI history file and applies it to a coding scheme.
NCIHistoryLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading NCI History files into LexBIG.
NCIHistoryLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.NCIHistoryLoader
 
NCIHistoryLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Loads a NCI Thesaurus History file.
NCIHistoryLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
NciHistoryService - Interface in org.lexevs.dao.database.service.ncihistory
The Interface NciHistoryService.
nciHistoryToRegistryEntry(String) - Static method in class org.lexevs.registry.utility.RegistryUtility
 
NCIMetaThesaurusSQL - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading from NCIMetaThesaurus format.
NCIMetaThesaurusSQL(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
NCIMetaThesaurusSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIMetaThesaurusSQL
 
nciMTServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
NCIOwl - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading from NCI Owl files.
NCIOwl(String, URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
NCIOwl() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
NCIT_URI - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
NCIThesaurusHistoryFile - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading a LexGrid Delimited Text File.
NCIThesaurusHistoryFile(URI, URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
NCIThesaurusHistoryFile() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
NCIThesaurusHistoryFileToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Converstion tool for loading a delimited text format into SQL.
NCIThesaurusHistoryFileToSQL(String, URI, URI, String, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.NCIThesaurusHistoryFileToSQL
NCI Thesaurus History File to SQL Converter.
NCIThesaurusHistoryServiceImpl - Class in org.LexGrid.LexBIG.Impl.History
The implementation of the history service against the custom NCI Thesaurus history file / table.
NCIThesaurusHistoryServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
This constructor is only here for Apache Axis to work correctly.
NCIThesaurusHistoryServiceImpl(String) - Constructor for class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceImpl
 
NCIThesaurusHistoryServiceTest - Class in org.LexGrid.LexBIG.Impl.History
JUnit tests for history service.
NCIThesaurusHistoryServiceTest() - Constructor for class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
NCIThesaurusHistorySQLQueries - Class in org.LexGrid.LexBIG.Impl.History
SQL queries necessary to implement the NCI history methods.
NCIThesaurusHistorySQLQueries() - Constructor for class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
NCIThesaurusURN - Static variable in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistorySQLQueries
 
NCItSourceAssertedValueSetUpdateService - Interface in org.LexGrid.LexBIG.Extensions.Load
 
NdfrtConstants - Class in org.lexgrid.lexevs.ndfrt
 
NdfrtConstants() - Constructor for class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
NdfrtXMLProcessor - Class in org.lexgrid.lexevs.ndfrt
 
NdfrtXMLProcessor() - Constructor for class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
needsExtraChar(char[]) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Needs extra char.
nesting - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
NeverSkipPolicy - Class in org.lexgrid.loader.reader.support
The Class NeverSkipPolicy.
NeverSkipPolicy() - Constructor for class org.lexgrid.loader.reader.support.NeverSkipPolicy
 
newNames - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
Initialize statements
next() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
next() - Method in class org.lexevs.paging.AbstractPageableIterator
 
next() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
 
next() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Returns the next item and advances the cursor.
next(int) - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Returns the next 'n' items and advances the cursor.
next() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
next(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
next(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetScoreDocIteratorWrapper
 
next() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
 
next() - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
next(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
next() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorAdapter
 
next() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
next(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
next() - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
next(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
next() - Method in interface org.LexGrid.LexBIG.Utility.Iterators.ResolvedConceptReferencesIterator
Return the next available concept reference, in order, from the underlying list.
next(int) - Method in interface org.LexGrid.LexBIG.Utility.Iterators.ResolvedConceptReferencesIterator
Return concept references from the underlying list, in order and up to the specified maximum.
next() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
next(int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
NextDatabasePrefixGenerator - Interface in org.lexevs.dao.database.prefix
The Interface NextDatabasePrefixGenerator.
NextDecorator() - Constructor for class org.lexevs.paging.AbstractPageableIterator.NextDecorator
Instantiates a new next decorator.
nextKey() - Method in class org.lexevs.dao.database.key.incrementer.AbstractKeyIncrementer
 
nextKey() - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Next key.
nextLoadBtn - Variable in class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell.ButtonUpdater
 
NO_CODE - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The N o_ code.
NO_SCHEME_URL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
NO_SCHEME_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
NoClosingRootTagStaxEventItemWriter<T> - Class in org.lexgrid.loader.writer
 
NoClosingRootTagStaxEventItemWriter() - Constructor for class org.lexgrid.loader.writer.NoClosingRootTagStaxEventItemWriter
 
NoCodeHandler<I> - Interface in org.lexgrid.loader.rrf.data.entity
The Interface NoCodeHandler.
NOCOLUMNNAME - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
Node - Class in org.lexevs.dao.database.access.association.model
 
Node() - Constructor for class org.lexevs.dao.database.access.association.model.Node
 
nodeAdded(LexEvsTreeNode) - Method in interface org.lexevs.tree.listener.NodeAddedListener
Deprecated.
Node added.
nodeAdded(LexEvsTreeNode) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
 
nodeAdded(LexEvsTreeNode) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListener
Node added.
nodeAdded(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
 
NodeAddedListener - Interface in org.lexevs.tree.listener
Deprecated.
NodeAddedListener - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.listener
The listener interface for receiving nodeAdded events.
NodeAddedListenerSupport - Class in org.lexevs.tree.listener
Deprecated.
NodeAddedListenerSupport() - Constructor for class org.lexevs.tree.listener.NodeAddedListenerSupport
Deprecated.
 
NodeAddedListenerSupport - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.listener
The Class NodeAddedListenerSupport.
NodeAddedListenerSupport() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListenerSupport
 
NodeColorAction(String) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.GraphView.NodeColorAction
 
NodeColorAction(String) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDGraphView.NodeColorAction
 
NODES - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant NODES.
NODES - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant NODES.
NON_RECOVERABLE - Static variable in class org.lexgrid.loader.constants.LoaderConstants
 
nonCodingSchemeToRegistryEntry(String, String, Registry.ResourceType) - Static method in class org.lexevs.registry.utility.RegistryUtility
Non Coding scheme entries like Concept Domain, Usage Context etc. to registry entry.
NonLeadingWildcardLiteralSubStringSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class NonLeadingWildcardLiteralSubStringSearch.
NonLeadingWildcardLiteralSubStringSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.NonLeadingWildcardLiteralSubStringSearch
 
NonProxyCodeHolderFactory - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
A factory for creating NonProxyCodeHolder objects.
NonProxyCodeHolderFactory() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyCodeHolderFactory
 
NonProxyLazyCodeToReturn - Class in org.LexGrid.LexBIG.Impl.helpers.lazyloading
The Class NonProxyLazyCodeToReturn.
NonProxyLazyCodeToReturn(ScoreDoc, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyLazyCodeToReturn
Instantiates a new non proxy lazy code to return.
NonProxyLazyCodeToReturn(String, String, float, int) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.lazyloading.NonProxyLazyCodeToReturn
Instantiates a new non proxy lazy code to return.
NoopEntityCodeResolver - Class in org.lexgrid.loader.processor.support
The Class NoopEntityCodeResolver.
NoopEntityCodeResolver() - Constructor for class org.lexgrid.loader.processor.support.NoopEntityCodeResolver
 
NoopEntityKeyResolver - Class in org.lexgrid.loader.database.key
 
NoopEntityKeyResolver() - Constructor for class org.lexgrid.loader.database.key.NoopEntityKeyResolver
 
NoopIndividualIdSetter - Class in org.lexgrid.loader.data.property
The Class NoopIndividualIdSetter.
NoopIndividualIdSetter() - Constructor for class org.lexgrid.loader.data.property.NoopIndividualIdSetter
 
NoopListIdSetter<I> - Class in org.lexgrid.loader.data.property
The Class NoopListIdSetter.
NoopListIdSetter() - Constructor for class org.lexgrid.loader.data.property.NoopListIdSetter
 
NoOpProcessor<T> - Class in org.lexgrid.loader.processor
NoOp List Processor.
NoOpProcessor() - Constructor for class org.lexgrid.loader.processor.NoOpProcessor
 
NoopWriter<I> - Class in org.lexgrid.loader.writer
The Class NoopWriter.
NoopWriter() - Constructor for class org.lexgrid.loader.writer.NoopWriter
 
NoQuotesDelimitedLineTokenizer - Class in org.lexgrid.loader.rrf.reader.linetokenizer
The Class NoQuotesDelimitedLineTokenizer.
NoQuotesDelimitedLineTokenizer() - Constructor for class org.lexgrid.loader.rrf.reader.linetokenizer.NoQuotesDelimitedLineTokenizer
 
NORM_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant NORM_PREFIX.
NORM_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The NOR m_ propert y_ valu e_ field.
normConfigFile_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
normEnabled_ - Variable in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
normEnabled_ - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The norm enabled_.
normEnabled_ - Static variable in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
NOT_IMPORT_NS - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
note - Static variable in class org.lexgrid.exporter.owlrdf.Skos
 
NSub - Variable in class org.LexGrid.util.file.CopyrightFieldScrubber
 
NSub - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
NULL - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
NULL_NAMESPACE_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.validator.error.NullNamespaceError
The NUL l_ namespac e_ code.
NullAssociationNamespaceListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving nullAssociationNamespace events.
NullAssociationNamespaceListener() - Constructor for class org.lexevs.dao.database.service.listener.NullAssociationNamespaceListener
 
NullEntityNamespaceListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving nullEntityNamespace events.
NullEntityNamespaceListener() - Constructor for class org.lexevs.dao.database.service.listener.NullEntityNamespaceListener
 
NullFocusRootsResolver - Class in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
NullFocusRootsResolver() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
NullMessageDirector - Class in org.lexevs.logging.messaging.impl
Message director implementation that does nothing with the messages.
NullMessageDirector() - Constructor for class org.lexevs.logging.messaging.impl.NullMessageDirector
 
NullNamespaceError - Class in edu.mayo.informatics.lexgrid.convert.validator.error
The Class NullNamespaceError.
NullNamespaceError(Object) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.NullNamespaceError
Instantiates a new null namespace error.
NullNamespaceResolver - Class in edu.mayo.informatics.lexgrid.convert.validator.resolution
The Class NullNamespaceResolver.
NullNamespaceResolver(CodingScheme) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.resolution.NullNamespaceResolver
Instantiates a new null namespace resolver.
NullNamespaceValidator - Class in edu.mayo.informatics.lexgrid.convert.validator
The Class NullNamespaceValidator.
NullNamespaceValidator() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.NullNamespaceValidator
 
NumberOfChildrenSort - Class in org.LexGrid.LexBIG.Impl.Extensions.Sort
NumberOfChildren sort which implements the Sort interface.
NumberOfChildrenSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.NumberOfChildrenSort
 
numberRemaining() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Indicates the number of items available to retrieve via next() operations.
numberRemaining() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
numberRemaining() - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
numberRemaining() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
numberRemaining() - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
numberRemaining() - Method in interface org.LexGrid.LexBIG.Utility.Iterators.EntityListIterator
Returns a count of the number of items remaining in the iterator.
numberRemaining() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
NumericBooleanTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
 
NumericBooleanTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.NumericBooleanTypeHandler
 

O

OBJECT - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
ObjectToString - Class in org.LexGrid.LexBIG.Utility
Class to turn LexBIG model objects into representative strings.
ObjectToString() - Constructor for class org.LexGrid.LexBIG.Utility.ObjectToString
 
OBO - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading OBO files.
OBO(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
OBO() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
 
OBO - Class in edu.mayo.informatics.resourcereader.obo
Class OBO
OBO() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBO
 
OBO(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBO
 
OBO2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
OBO To EMF Implementation.
OBO2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
OBO2LGDynamicMapHolders - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
OBO To EMF Implementation.
OBO2LGDynamicMapHolders(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
OBO2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
OBO To EMF Implementation.
OBO2LGMain() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGMain
 
OBO2LGStaticMapHolders - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
 
OBO2LGStaticMapHolders() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
OBO2LGStaticMapHolders(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGStaticMapHolders
 
OBO2LGUtils - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
OBO To EMF Implementation.
OBO2LGUtils() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
OBO_ABB_FILENAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
OBO_CURRENT_FORMAT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBO_Exporter - Interface in org.LexGrid.LexBIG.Extensions.Export
Exports content to OBO text format.
OBO_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads content provided in OBO text format.
OBO_REL_FILENAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
OBO_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
OBO_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
OBOAbbreviation - Class in edu.mayo.informatics.resourcereader.obo
This class stores OBO Abbreviation information
OBOAbbreviation() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
OBOAbbreviation(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
OBOAbbreviations - Class in edu.mayo.informatics.resourcereader.obo
The class stores the list of obo abbreviations
OBOAbbreviations(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
OBOCollection - Class in edu.mayo.informatics.resourcereader.obo
A OBO implementation of a ResourceCollection
OBOCollection(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOCollection
 
OBOConstants - Class in edu.mayo.informatics.resourcereader.obo
This file contains the OBO Constants.
OBOConstants() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBOContents - Class in edu.mayo.informatics.resourcereader.obo
The class that is used to store the OBO Contents
OBOContents(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOContents
 
OBODbxref - Class in edu.mayo.informatics.resourcereader.obo
 
OBODbxref() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
OBODEF_TRLMODF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBOEntity - Class in edu.mayo.informatics.resourcereader.obo
A commom class that is used to store common entity information
OBOEntity() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
OBOEntity(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
OBOExport - Class in org.LexGrid.LexBIG.gui.export
GUI that allows loading OBO files into LexBIG.
OBOExport(LB_GUI, AbsoluteCodingSchemeVersionReference) - Constructor for class org.LexGrid.LexBIG.gui.export.OBOExport
 
OBOExport - Class in org.LexGrid.LexBIG.Impl.exporters
Exporter for OBO files.
OBOExport() - Constructor for class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
OBOFormatValidator - Class in edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2
Validate that the OBO format looks right.
OBOFormatValidator() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBOFormatValidator
 
OBOHeader - Class in edu.mayo.informatics.resourcereader.obo
The class is used to store the header information found in a OBO version 1.2 format file.
OBOHeader(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
OBOHistoryLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
Load an OBO change history file.
OBOInstance - Class in edu.mayo.informatics.resourcereader.obo
This class stores the OBO Instance information
OBOInstance(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
OBOInstances - Class in edu.mayo.informatics.resourcereader.obo
This class stores the list of OBO Instances
OBOInstances(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
OBOLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading OBO files into LexBIG.
OBOLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.OBOLoader
 
OBOLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Class to load OBO files.
OBOLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
OBOLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences
Placeholder.
OBOLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.OBOLoaderPreferences
 
OBOLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors
Class OBOLoaderPreferencesDescriptor.
OBOLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors.OBOLoaderPreferencesDescriptor
 
OBOMethodNotImplementedException - Exception in edu.mayo.informatics.resourcereader.obo.exceptions
Obo specific exception to be thrown when some Method Has not been implemented yet.
OBOMethodNotImplementedException() - Constructor for exception edu.mayo.informatics.resourcereader.obo.exceptions.OBOMethodNotImplementedException
 
OBOMethodNotImplementedException(String) - Constructor for exception edu.mayo.informatics.resourcereader.obo.exceptions.OBOMethodNotImplementedException
 
OBOOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing an OBO file.
OBOOut(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
OBOOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
OBOPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load OBO loader preferences from an XML file
OBOPreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OBOPreferenceLoader
Constructor for creating an OBOPreferenceLoader.
OBOPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OBOPreferenceLoader
Constructor for creating an OBOPreferenceLoader.
OBORelation - Class in edu.mayo.informatics.resourcereader.obo
The class stores the OBO Relation information
OBORelation(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBORelation
 
OBORelations - Class in edu.mayo.informatics.resourcereader.obo
The class stores the list of OBO relations
OBORelations(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBORelations
 
OBOResourceException - Exception in edu.mayo.informatics.resourcereader.obo.exceptions
OBO specific ResourceException
OBOResourceException(String) - Constructor for exception edu.mayo.informatics.resourcereader.obo.exceptions.OBOResourceException
 
OBOResourceManifest - Class in edu.mayo.informatics.resourcereader.obo
A OBO Specific Resource Manifest
OBOResourceManifest(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
OBOResourceManifest(URI, URI, URI, CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
OBOResourceReader - Class in edu.mayo.informatics.resourcereader.obo
The class is used to read a resource
OBOResourceReader(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
OBOResourceReaderHelper - Class in edu.mayo.informatics.resourcereader.obo
This class reads the OBO file and stores the information into a ResourceHeader and ResourceContents object.
OBOResourceReaderHelper(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
OBOResourceReaderHelper(URI, CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
OBOResourceReaderHelper(BufferedReader, CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
OBOResourceReaderHelper(URL, CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
OBOResourceType - Class in edu.mayo.informatics.resourcereader.obo
OBO resource Type
OBOResourceType() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOResourceType
 
OBOSynonym - Class in edu.mayo.informatics.resourcereader.obo
 
OBOSynonym() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
OBOTerm - Class in edu.mayo.informatics.resourcereader.obo
The class stores information about a OBO Term
OBOTerm(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
OBOTerms - Class in edu.mayo.informatics.resourcereader.obo
The class stores informatiom about the list of OBO Terms
OBOTerms(CachingMessageDirectorIF) - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
OBOTest - Class in edu.mayo.informatics.resourcereader.obo
 
OBOTest() - Constructor for class edu.mayo.informatics.resourcereader.obo.OBOTest
 
OBOTYPES_INSTANCE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBOTYPES_TERM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBOTYPES_TERMORTYPE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
OBOTYPES_TYPE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
onApplicationEvent(ContextRefreshedEvent) - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
onCodingSchemeInsertError(CodingSchemeInsertErrorEvent<T>) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On coding scheme insert error.
onCodingSchemeInsertError(CodingSchemeInsertErrorEvent<T>) - Method in class org.lexevs.dao.database.service.listener.CodingSchemeRegisteringListener
 
onCodingSchemeInsertError(CodingSchemeInsertErrorEvent<T>) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onCodingSchemeUpdate(CodingSchemeUpdateEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On coding scheme update.
onCodingSchemeUpdate(CodingSchemeUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onDatabaseError(DatabaseError) - Method in class edu.mayo.informatics.lexgrid.convert.errorcallback.ErrorResolvingErrorCallbackListener
 
onDatabaseError(DatabaseError) - Method in interface org.lexevs.dao.database.service.error.ErrorCallbackListener
On database error.
onEntityIndex(Entity) - Method in interface org.lexevs.dao.index.indexer.IndexCreator.EntityIndexerProgressCallback
 
onEntityReviseEvent(EntityReviseEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On entity revise event.
onEntityReviseEvent(EntityReviseEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onEntityUpdate(EntityUpdateEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On entity update.
onEntityUpdate(EntityUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onEntityUpdate(EntityUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.HistoryTableReplicatingListener
 
onEntityUpdate(EntityUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityUpdateListener
 
onItemUpdate(T) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
onItemUpdate(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.edit.EntityEditDialog
 
onItemUpdate(T) - Method in interface org.LexGrid.LexBIG.gui.edit.ItemUpdateListener
 
onPostBatchEntityInsert(EntityBatchInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post batch entity insert.
onPostBatchEntityInsert(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostCodingSchemeInsert(PostCodingSchemeInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post coding scheme insert.
onPostCodingSchemeInsert(PostCodingSchemeInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostCodingSchemeInsert(PostCodingSchemeInsertEvent) - Method in class org.lexevs.dao.database.service.listener.SystemResourceRefreshingListener
 
onPostEntityInsert(EntityInsertOrRemoveEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post entity insert.
onPostEntityInsert(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostEntityInsert(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityInsertListener
 
onPostEntityRemove(EntityInsertOrRemoveEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post entity remove.
onPostEntityRemove(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostEntityRemove(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityRemoveListener
 
onPostPropertyInsert(PropertyUpdateEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post property insert.
onPostPropertyInsert(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostPropertyInsert(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityPropertyInsertListener
 
onPostPropertyRemove(PropertyUpdateEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On post property remove.
onPostPropertyRemove(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPostPropertyRemove(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityPropertyRemoveListener
 
onPreAssociationInsert(AssociationBatchInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On pre association insert.
onPreAssociationInsert(AssociationBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.AbstractPreAssociationInsertValidatingListener
 
onPreAssociationInsert(AssociationBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPreBatchAssociationInsert(AssociationBatchInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On pre batch association insert.
onPreBatchAssociationInsert(AssociationBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.AbstractPreAssociationInsertValidatingListener
 
onPreBatchAssociationInsert(AssociationBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPreBatchEntityInsert(EntityBatchInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On pre batch entity insert.
onPreBatchEntityInsert(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.AbstractPreEntityInsertValidatingListener
 
onPreBatchEntityInsert(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultLanguageAddingListener
 
onPreBatchEntityInsert(EntityBatchInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPreCodingSchemeInsert(PreCodingSchemeInsertEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On coding scheme insert.
onPreCodingSchemeInsert(PreCodingSchemeInsertEvent) - Method in class org.lexevs.dao.database.service.listener.CodingSchemeRegisteringListener
 
onPreCodingSchemeInsert(PreCodingSchemeInsertEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPreEntityInsert(EntityInsertOrRemoveEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On pre entity insert.
onPreEntityInsert(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.AbstractPreEntityInsertValidatingListener
 
onPreEntityInsert(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultLanguageAddingListener
 
onPreEntityInsert(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPreEntityRemove(EntityInsertOrRemoveEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On pre entity remove.
onPreEntityRemove(EntityInsertOrRemoveEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPrepareStatement(String) - Method in class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
 
onPropertyUpdate(PropertyUpdateEvent) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
On property update.
onPropertyUpdate(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
onPropertyUpdate(PropertyUpdateEvent) - Method in class org.lexevs.dao.database.service.listener.LuceneEntityPropertyUpdateListener
 
onRemoveCodingSchemeResourceFromSystemEvent(String, String) - Method in interface org.lexevs.system.event.SystemEventListener
 
onRemoveCodingSchemeResourceFromSystemEvent(String, String) - Method in class org.lexevs.system.listener.DefaultSystemEventListener
 
ONTOLOGY_NODE_CHILD_COUNT - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant ONTOLOGY_NODE_CHILD_COUNT.
ONTOLOGY_NODE_CHILD_COUNT - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant ONTOLOGY_NODE_CHILD_COUNT.
ONTOLOGY_NODE_ID - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant ONTOLOGY_NODE_ID.
ONTOLOGY_NODE_ID - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant ONTOLOGY_NODE_ID.
ONTOLOGY_NODE_NAME - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant ONTOLOGY_NODE_NAME.
ONTOLOGY_NODE_NAME - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant ONTOLOGY_NODE_NAME.
ONTOLOGY_NODE_NS - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant ONTOLOGY_NODE_NS.
ONTOLOGY_NODE_NS - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant ONTOLOGY_NODE_NS.
OntologyFormat - Enum in org.LexGrid.LexBIG.Extensions.Load
 
OntologyFormatAddingPostProcessor - Class in org.LexGrid.LexBIG.Impl.loaders.postprocessor
The Class OntologyFormatAddingPostProcessor.
OntologyFormatAddingPostProcessor() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
 
OntologyNode - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.utility
 
OntologyNode() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
open() - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
Operation(CodeSet, CodeSet, int) - Constructor for class org.LexGrid.LexBIG.gui.codeSet.CodeSet.Operation
 
Operation - Interface in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces
Interface for all Operation holder classes.
operation_ - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
optimize() - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
Deprecated.
optimizePendingOpsOrder() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
Option - Class in edu.mayo.informatics.lexgrid.convert.formats
Define all options that can be used by various conversions.
Option(int, Object) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.Option
 
Option<T> - Interface in org.LexGrid.LexBIG.Extensions.Load.options
The Interface Option.
OPTION_FORCE - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.constants.LexGridConstants
 
OptionalPropertyQualifierResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface OptionalQualifierResolver.
OptionalQualifierResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface OptionalQualifierResolver.
OptionalResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface OptionalResolver.
OptionHolder - Class in edu.mayo.informatics.lexgrid.convert.formats
Class to simplify the collection of Options.
OptionHolder() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.OptionHolder
 
OptionHolder - Interface in org.LexGrid.LexBIG.Extensions.Load.options
The Interface OptionHolder.
OrderingTestRunner - Class in org.LexGrid.LexBIG.Utility
JUnit TestRunner to allow for ordering of methods using Springs Order annotation.
OrderingTestRunner(Class<?>) - Constructor for class org.LexGrid.LexBIG.Utility.OrderingTestRunner
 
OrderingTestRunnerTest - Class in org.LexGrid.LexBIG.Utility
 
OrderingTestRunnerTest() - Constructor for class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest
 
OrderingTestRunnerTest.Test - Class in org.LexGrid.LexBIG.Utility
 
org.lexevs.cache - package org.lexevs.cache
 
org.lexevs.cache.annotation - package org.lexevs.cache.annotation
 
org.lexevs.dao.database.access - package org.lexevs.dao.database.access
 
org.lexevs.dao.database.access.association - package org.lexevs.dao.database.access.association
 
org.lexevs.dao.database.access.association.batch - package org.lexevs.dao.database.access.association.batch
 
org.lexevs.dao.database.access.association.model - package org.lexevs.dao.database.access.association.model
 
org.lexevs.dao.database.access.association.model.graphdb - package org.lexevs.dao.database.access.association.model.graphdb
 
org.lexevs.dao.database.access.codednodegraph - package org.lexevs.dao.database.access.codednodegraph
 
org.lexevs.dao.database.access.codednodeset - package org.lexevs.dao.database.access.codednodeset
 
org.lexevs.dao.database.access.codingscheme - package org.lexevs.dao.database.access.codingscheme
 
org.lexevs.dao.database.access.entity - package org.lexevs.dao.database.access.entity
 
org.lexevs.dao.database.access.factory - package org.lexevs.dao.database.access.factory
 
org.lexevs.dao.database.access.ncihistory - package org.lexevs.dao.database.access.ncihistory
 
org.lexevs.dao.database.access.property - package org.lexevs.dao.database.access.property
 
org.lexevs.dao.database.access.property.batch - package org.lexevs.dao.database.access.property.batch
 
org.lexevs.dao.database.access.registry - package org.lexevs.dao.database.access.registry
 
org.lexevs.dao.database.access.revision - package org.lexevs.dao.database.access.revision
 
org.lexevs.dao.database.access.systemRelease - package org.lexevs.dao.database.access.systemRelease
 
org.lexevs.dao.database.access.tablemetadata - package org.lexevs.dao.database.access.tablemetadata
 
org.lexevs.dao.database.access.valuesets - package org.lexevs.dao.database.access.valuesets
 
org.lexevs.dao.database.access.versions - package org.lexevs.dao.database.access.versions
 
org.lexevs.dao.database.connection - package org.lexevs.dao.database.connection
 
org.lexevs.dao.database.constants - package org.lexevs.dao.database.constants
 
org.lexevs.dao.database.constants.classifier.mapping - package org.lexevs.dao.database.constants.classifier.mapping
 
org.lexevs.dao.database.constants.classifier.property - package org.lexevs.dao.database.constants.classifier.property
 
org.lexevs.dao.database.datasource - package org.lexevs.dao.database.datasource
 
org.lexevs.dao.database.hibernate.prefix - package org.lexevs.dao.database.hibernate.prefix
 
org.lexevs.dao.database.hibernate.registry - package org.lexevs.dao.database.hibernate.registry
 
org.lexevs.dao.database.ibatis - package org.lexevs.dao.database.ibatis
 
org.lexevs.dao.database.ibatis.association - package org.lexevs.dao.database.ibatis.association
 
org.lexevs.dao.database.ibatis.association.parameter - package org.lexevs.dao.database.ibatis.association.parameter
 
org.lexevs.dao.database.ibatis.batch - package org.lexevs.dao.database.ibatis.batch
 
org.lexevs.dao.database.ibatis.codednodegraph - package org.lexevs.dao.database.ibatis.codednodegraph
 
org.lexevs.dao.database.ibatis.codednodegraph.model - package org.lexevs.dao.database.ibatis.codednodegraph.model
 
org.lexevs.dao.database.ibatis.codingscheme - package org.lexevs.dao.database.ibatis.codingscheme
 
org.lexevs.dao.database.ibatis.codingscheme.parameter - package org.lexevs.dao.database.ibatis.codingscheme.parameter
 
org.lexevs.dao.database.ibatis.entity - package org.lexevs.dao.database.ibatis.entity
 
org.lexevs.dao.database.ibatis.entity.model - package org.lexevs.dao.database.ibatis.entity.model
 
org.lexevs.dao.database.ibatis.entity.parameter - package org.lexevs.dao.database.ibatis.entity.parameter
 
org.lexevs.dao.database.ibatis.ncihistory - package org.lexevs.dao.database.ibatis.ncihistory
 
org.lexevs.dao.database.ibatis.parameter - package org.lexevs.dao.database.ibatis.parameter
 
org.lexevs.dao.database.ibatis.property - package org.lexevs.dao.database.ibatis.property
 
org.lexevs.dao.database.ibatis.property.parameter - package org.lexevs.dao.database.ibatis.property.parameter
 
org.lexevs.dao.database.ibatis.revision - package org.lexevs.dao.database.ibatis.revision
 
org.lexevs.dao.database.ibatis.sqlmap - package org.lexevs.dao.database.ibatis.sqlmap
 
org.lexevs.dao.database.ibatis.systemRelease - package org.lexevs.dao.database.ibatis.systemRelease
 
org.lexevs.dao.database.ibatis.tablemetadata.parameter - package org.lexevs.dao.database.ibatis.tablemetadata.parameter
 
org.lexevs.dao.database.ibatis.valuesets - package org.lexevs.dao.database.ibatis.valuesets
 
org.lexevs.dao.database.ibatis.valuesets.helper - package org.lexevs.dao.database.ibatis.valuesets.helper
 
org.lexevs.dao.database.ibatis.valuesets.parameter - package org.lexevs.dao.database.ibatis.valuesets.parameter
 
org.lexevs.dao.database.ibatis.versions - package org.lexevs.dao.database.ibatis.versions
 
org.lexevs.dao.database.ibatis.versions.parameter - package org.lexevs.dao.database.ibatis.versions.parameter
 
org.lexevs.dao.database.inserter - package org.lexevs.dao.database.inserter
 
org.lexevs.dao.database.jdbc - package org.lexevs.dao.database.jdbc
 
org.lexevs.dao.database.key - package org.lexevs.dao.database.key
 
org.lexevs.dao.database.key.incrementer - package org.lexevs.dao.database.key.incrementer
 
org.lexevs.dao.database.lazyload - package org.lexevs.dao.database.lazyload
 
org.lexevs.dao.database.operation - package org.lexevs.dao.database.operation
 
org.lexevs.dao.database.operation.root - package org.lexevs.dao.database.operation.root
 
org.lexevs.dao.database.operation.tools - package org.lexevs.dao.database.operation.tools
 
org.lexevs.dao.database.operation.transitivity - package org.lexevs.dao.database.operation.transitivity
 
org.lexevs.dao.database.prefix - package org.lexevs.dao.database.prefix
 
org.lexevs.dao.database.schemaversion - package org.lexevs.dao.database.schemaversion
 
org.lexevs.dao.database.scheme - package org.lexevs.dao.database.scheme
 
org.lexevs.dao.database.service - package org.lexevs.dao.database.service
 
org.lexevs.dao.database.service.association - package org.lexevs.dao.database.service.association
 
org.lexevs.dao.database.service.codednodegraph - package org.lexevs.dao.database.service.codednodegraph
 
org.lexevs.dao.database.service.codednodegraph.model - package org.lexevs.dao.database.service.codednodegraph.model
 
org.lexevs.dao.database.service.codingscheme - package org.lexevs.dao.database.service.codingscheme
 
org.lexevs.dao.database.service.daocallback - package org.lexevs.dao.database.service.daocallback
 
org.lexevs.dao.database.service.entity - package org.lexevs.dao.database.service.entity
 
org.lexevs.dao.database.service.error - package org.lexevs.dao.database.service.error
 
org.lexevs.dao.database.service.event - package org.lexevs.dao.database.service.event
 
org.lexevs.dao.database.service.event.association - package org.lexevs.dao.database.service.event.association
 
org.lexevs.dao.database.service.event.codingscheme - package org.lexevs.dao.database.service.event.codingscheme
 
org.lexevs.dao.database.service.event.entity - package org.lexevs.dao.database.service.event.entity
 
org.lexevs.dao.database.service.event.property - package org.lexevs.dao.database.service.event.property
 
org.lexevs.dao.database.service.event.registry - package org.lexevs.dao.database.service.event.registry
 
org.lexevs.dao.database.service.event.revision - package org.lexevs.dao.database.service.event.revision
 
org.lexevs.dao.database.service.exception - package org.lexevs.dao.database.service.exception
 
org.lexevs.dao.database.service.listener - package org.lexevs.dao.database.service.listener
 
org.lexevs.dao.database.service.ncihistory - package org.lexevs.dao.database.service.ncihistory
 
org.lexevs.dao.database.service.property - package org.lexevs.dao.database.service.property
 
org.lexevs.dao.database.service.relation - package org.lexevs.dao.database.service.relation
 
org.lexevs.dao.database.service.valuesets - package org.lexevs.dao.database.service.valuesets
 
org.lexevs.dao.database.service.version - package org.lexevs.dao.database.service.version
 
org.lexevs.dao.database.setup.schemacheck - package org.lexevs.dao.database.setup.schemacheck
 
org.lexevs.dao.database.setup.script - package org.lexevs.dao.database.setup.script
 
org.lexevs.dao.database.spring - package org.lexevs.dao.database.spring
 
org.lexevs.dao.database.sqlimplementedmethods - package org.lexevs.dao.database.sqlimplementedmethods
 
org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model - package org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model
 
org.lexevs.dao.database.sqlimplementedmethods.codednodeset - package org.lexevs.dao.database.sqlimplementedmethods.codednodeset
 
org.lexevs.dao.database.sqlimplementedmethods.codingscheme - package org.lexevs.dao.database.sqlimplementedmethods.codingscheme
 
org.lexevs.dao.database.sqlimplementedmethods.entity - package org.lexevs.dao.database.sqlimplementedmethods.entity
 
org.lexevs.dao.database.type - package org.lexevs.dao.database.type
 
org.lexevs.dao.database.utility - package org.lexevs.dao.database.utility
 
org.lexevs.dao.index.access - package org.lexevs.dao.index.access
 
org.lexevs.dao.index.access.entity - package org.lexevs.dao.index.access.entity
 
org.lexevs.dao.index.access.metadata - package org.lexevs.dao.index.access.metadata
 
org.lexevs.dao.index.access.search - package org.lexevs.dao.index.access.search
 
org.lexevs.dao.index.connection - package org.lexevs.dao.index.connection
 
org.lexevs.dao.index.factory - package org.lexevs.dao.index.factory
 
org.lexevs.dao.index.indexer - package org.lexevs.dao.index.indexer
 
org.lexevs.dao.index.indexregistry - package org.lexevs.dao.index.indexregistry
 
org.lexevs.dao.index.lucene - package org.lexevs.dao.index.lucene
 
org.lexevs.dao.index.lucene.v2009.entity - package org.lexevs.dao.index.lucene.v2009.entity
 
org.lexevs.dao.index.lucene.v2010.entity - package org.lexevs.dao.index.lucene.v2010.entity
 
org.lexevs.dao.index.lucene.v2010.metadata - package org.lexevs.dao.index.lucene.v2010.metadata
 
org.lexevs.dao.index.lucene.v2013.search - package org.lexevs.dao.index.lucene.v2013.search
 
org.lexevs.dao.index.lucenesupport - package org.lexevs.dao.index.lucenesupport
 
org.lexevs.dao.index.metadata - package org.lexevs.dao.index.metadata
 
org.lexevs.dao.index.operation - package org.lexevs.dao.index.operation
 
org.lexevs.dao.index.operation.tools - package org.lexevs.dao.index.operation.tools
 
org.lexevs.dao.index.service - package org.lexevs.dao.index.service
 
org.lexevs.dao.index.service.entity - package org.lexevs.dao.index.service.entity
 
org.lexevs.dao.index.service.metadata - package org.lexevs.dao.index.service.metadata
 
org.lexevs.dao.index.service.search - package org.lexevs.dao.index.service.search
 
org.lexevs.dao.index.version - package org.lexevs.dao.index.version
 
org.lexevs.dao.indexer.api - package org.lexevs.dao.indexer.api
 
org.lexevs.dao.indexer.api.generators - package org.lexevs.dao.indexer.api.generators
 
org.lexevs.dao.indexer.lucene - package org.lexevs.dao.indexer.lucene
 
org.lexevs.dao.indexer.lucene.query - package org.lexevs.dao.indexer.lucene.query
 
org.lexevs.dao.indexer.utility - package org.lexevs.dao.indexer.utility
 
org.lexevs.exceptions - package org.lexevs.exceptions
 
org.lexevs.locator - package org.lexevs.locator
 
org.lexevs.logging - package org.lexevs.logging
 
org.lexevs.logging.messaging.impl - package org.lexevs.logging.messaging.impl
 
org.lexevs.paging - package org.lexevs.paging
 
org.lexevs.paging.codednodegraph - package org.lexevs.paging.codednodegraph
 
org.lexevs.registry - package org.lexevs.registry
 
org.lexevs.registry.constant - package org.lexevs.registry.constant
 
org.lexevs.registry.event - package org.lexevs.registry.event
 
org.lexevs.registry.event.events - package org.lexevs.registry.event.events
 
org.lexevs.registry.model - package org.lexevs.registry.model
 
org.lexevs.registry.service - package org.lexevs.registry.service
 
org.lexevs.registry.setup - package org.lexevs.registry.setup
 
org.lexevs.registry.utility - package org.lexevs.registry.utility
 
org.lexevs.registry.xmltransfer - package org.lexevs.registry.xmltransfer
 
org.lexevs.system - package org.lexevs.system
 
org.lexevs.system.constants - package org.lexevs.system.constants
 
org.lexevs.system.event - package org.lexevs.system.event
 
org.lexevs.system.listener - package org.lexevs.system.listener
 
org.lexevs.system.model - package org.lexevs.system.model
 
org.lexevs.system.service - package org.lexevs.system.service
 
org.lexevs.system.utility - package org.lexevs.system.utility
 
org.lexevs.tree.dao - package org.lexevs.tree.dao
 
org.lexevs.tree.dao.hierarchy - package org.lexevs.tree.dao.hierarchy
 
org.lexevs.tree.dao.iterator - package org.lexevs.tree.dao.iterator
 
org.lexevs.tree.dao.pathtoroot - package org.lexevs.tree.dao.pathtoroot
 
org.lexevs.tree.dao.prefixresolver - package org.lexevs.tree.dao.prefixresolver
 
org.lexevs.tree.dao.rowmapper - package org.lexevs.tree.dao.rowmapper
 
org.lexevs.tree.dao.sqlbuilder - package org.lexevs.tree.dao.sqlbuilder
 
org.lexevs.tree.evstree - package org.lexevs.tree.evstree
 
org.lexevs.tree.json - package org.lexevs.tree.json
 
org.lexevs.tree.listener - package org.lexevs.tree.listener
 
org.lexevs.tree.model - package org.lexevs.tree.model
 
org.lexevs.tree.service - package org.lexevs.tree.service
 
org.lexevs.tree.transform - package org.lexevs.tree.transform
 
org.lexevs.tree.utility - package org.lexevs.tree.utility
 
org.LexGrid.annotations - package org.LexGrid.annotations
 
org.LexGrid.builtins - package org.LexGrid.builtins
 
org.LexGrid.builtins.descriptors - package org.LexGrid.builtins.descriptors
 
org.LexGrid.codingSchemes - package org.LexGrid.codingSchemes
 
org.LexGrid.codingSchemes.descriptors - package org.LexGrid.codingSchemes.descriptors
 
org.LexGrid.commonTypes - package org.LexGrid.commonTypes
 
org.LexGrid.commonTypes.descriptors - package org.LexGrid.commonTypes.descriptors
 
org.LexGrid.commonTypes.types - package org.LexGrid.commonTypes.types
 
org.LexGrid.commonTypes.types.descriptors - package org.LexGrid.commonTypes.types.descriptors
 
org.lexgrid.conceptdomain - package org.lexgrid.conceptdomain
 
org.lexgrid.conceptdomain.impl - package org.lexgrid.conceptdomain.impl
 
org.lexgrid.conceptdomain.util - package org.lexgrid.conceptdomain.util
 
org.LexGrid.concepts - package org.LexGrid.concepts
 
org.LexGrid.concepts.descriptors - package org.LexGrid.concepts.descriptors
 
org.LexGrid.custom.concepts - package org.LexGrid.custom.concepts
 
org.LexGrid.custom.relations - package org.LexGrid.custom.relations
 
org.lexgrid.exporter.owlrdf - package org.lexgrid.exporter.owlrdf
 
org.LexGrid.LexBIG.admin - package org.LexGrid.LexBIG.admin
 
org.LexGrid.LexBIG.DataModel.Collections - package org.LexGrid.LexBIG.DataModel.Collections
 
org.LexGrid.LexBIG.DataModel.Collections.descriptors - package org.LexGrid.LexBIG.DataModel.Collections.descriptors
 
org.LexGrid.LexBIG.DataModel.Core - package org.LexGrid.LexBIG.DataModel.Core
 
org.LexGrid.LexBIG.DataModel.Core.descriptors - package org.LexGrid.LexBIG.DataModel.Core.descriptors
 
org.LexGrid.LexBIG.DataModel.Core.types - package org.LexGrid.LexBIG.DataModel.Core.types
 
org.LexGrid.LexBIG.DataModel.Core.types.descriptors - package org.LexGrid.LexBIG.DataModel.Core.types.descriptors
 
org.LexGrid.LexBIG.DataModel.enums - package org.LexGrid.LexBIG.DataModel.enums
 
org.LexGrid.LexBIG.DataModel.enums.descriptors - package org.LexGrid.LexBIG.DataModel.enums.descriptors
 
org.LexGrid.LexBIG.DataModel.InterfaceElements - package org.LexGrid.LexBIG.DataModel.InterfaceElements
 
org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors - package org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
 
org.LexGrid.LexBIG.DataModel.InterfaceElements.types - package org.LexGrid.LexBIG.DataModel.InterfaceElements.types
 
org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors - package org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors
 
org.LexGrid.LexBIG.DataModel.NCIHistory - package org.LexGrid.LexBIG.DataModel.NCIHistory
 
org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors - package org.LexGrid.LexBIG.DataModel.NCIHistory.descriptors
 
org.LexGrid.LexBIG.DataModel.NCIHistory.types - package org.LexGrid.LexBIG.DataModel.NCIHistory.types
 
org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors - package org.LexGrid.LexBIG.DataModel.NCIHistory.types.descriptors
 
org.LexGrid.LexBIG.example - package org.LexGrid.LexBIG.example
 
org.LexGrid.LexBIG.Exceptions - package org.LexGrid.LexBIG.Exceptions
 
org.LexGrid.LexBIG.Extensions - package org.LexGrid.LexBIG.Extensions
 
org.LexGrid.LexBIG.Extensions.Export - package org.LexGrid.LexBIG.Extensions.Export
 
org.LexGrid.LexBIG.Extensions.Generic - package org.LexGrid.LexBIG.Extensions.Generic
 
org.LexGrid.LexBIG.Extensions.Index - package org.LexGrid.LexBIG.Extensions.Index
 
org.LexGrid.LexBIG.Extensions.Load - package org.LexGrid.LexBIG.Extensions.Load
 
org.LexGrid.LexBIG.Extensions.Load.options - package org.LexGrid.LexBIG.Extensions.Load.options
 
org.LexGrid.LexBIG.Extensions.Load.postprocessor - package org.LexGrid.LexBIG.Extensions.Load.postprocessor
 
org.LexGrid.LexBIG.Extensions.Query - package org.LexGrid.LexBIG.Extensions.Query
 
org.LexGrid.LexBIG.gui - package org.LexGrid.LexBIG.gui
 
org.LexGrid.LexBIG.gui.codeSet - package org.LexGrid.LexBIG.gui.codeSet
 
org.LexGrid.LexBIG.gui.codeSystemView - package org.LexGrid.LexBIG.gui.codeSystemView
 
org.LexGrid.LexBIG.gui.config - package org.LexGrid.LexBIG.gui.config
 
org.LexGrid.LexBIG.gui.displayResults - package org.LexGrid.LexBIG.gui.displayResults
 
org.LexGrid.LexBIG.gui.edit - package org.LexGrid.LexBIG.gui.edit
 
org.LexGrid.LexBIG.gui.export - package org.LexGrid.LexBIG.gui.export
 
org.LexGrid.LexBIG.gui.history - package org.LexGrid.LexBIG.gui.history
 
org.LexGrid.LexBIG.gui.load - package org.LexGrid.LexBIG.gui.load
 
org.LexGrid.LexBIG.gui.logging - package org.LexGrid.LexBIG.gui.logging
 
org.LexGrid.LexBIG.gui.plugin - package org.LexGrid.LexBIG.gui.plugin
 
org.LexGrid.LexBIG.gui.restrictions - package org.LexGrid.LexBIG.gui.restrictions
 
org.LexGrid.LexBIG.gui.sortOptions - package org.LexGrid.LexBIG.gui.sortOptions
 
org.LexGrid.LexBIG.gui.valueSetsView - package org.LexGrid.LexBIG.gui.valueSetsView
 
org.LexGrid.LexBIG.History - package org.LexGrid.LexBIG.History
 
org.LexGrid.LexBIG.Impl - package org.LexGrid.LexBIG.Impl
 
org.LexGrid.LexBIG.Impl.codedNodeGraphOperations - package org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
 
org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces - package org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces
 
org.LexGrid.LexBIG.Impl.codedNodeSetOperations - package org.LexGrid.LexBIG.Impl.codedNodeSetOperations
 
org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces - package org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces
 
org.LexGrid.LexBIG.Impl.dataAccess - package org.LexGrid.LexBIG.Impl.dataAccess
 
org.LexGrid.LexBIG.Impl.exporters - package org.LexGrid.LexBIG.Impl.exporters
 
org.LexGrid.LexBIG.Impl.Extensions - package org.LexGrid.LexBIG.Impl.Extensions
 
org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions - package org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping - package org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
 
org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search - package org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement - package org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement
 
org.LexGrid.LexBIG.Impl.Extensions.Search - package org.LexGrid.LexBIG.Impl.Extensions.Search
 
org.LexGrid.LexBIG.Impl.Extensions.Search.query - package org.LexGrid.LexBIG.Impl.Extensions.Search.query
 
org.LexGrid.LexBIG.Impl.Extensions.Sort - package org.LexGrid.LexBIG.Impl.Extensions.Sort
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.hierarchy
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.rowmapper - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.rowmapper
 
org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder - package org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder
 
org.LexGrid.LexBIG.Impl.Extensions.tree.evstree - package org.LexGrid.LexBIG.Impl.Extensions.tree.evstree
 
org.LexGrid.LexBIG.Impl.Extensions.tree.json - package org.LexGrid.LexBIG.Impl.Extensions.tree.json
 
org.LexGrid.LexBIG.Impl.Extensions.tree.listener - package org.LexGrid.LexBIG.Impl.Extensions.tree.listener
 
org.LexGrid.LexBIG.Impl.Extensions.tree.model - package org.LexGrid.LexBIG.Impl.Extensions.tree.model
 
org.LexGrid.LexBIG.Impl.Extensions.tree.service - package org.LexGrid.LexBIG.Impl.Extensions.tree.service
 
org.LexGrid.LexBIG.Impl.Extensions.tree.transform - package org.LexGrid.LexBIG.Impl.Extensions.tree.transform
 
org.LexGrid.LexBIG.Impl.Extensions.tree.utility - package org.LexGrid.LexBIG.Impl.Extensions.tree.utility
 
org.LexGrid.LexBIG.Impl.helpers - package org.LexGrid.LexBIG.Impl.helpers
 
org.LexGrid.LexBIG.Impl.helpers.comparator - package org.LexGrid.LexBIG.Impl.helpers.comparator
 
org.LexGrid.LexBIG.Impl.helpers.graph - package org.LexGrid.LexBIG.Impl.helpers.graph
 
org.LexGrid.LexBIG.Impl.helpers.lazyloading - package org.LexGrid.LexBIG.Impl.helpers.lazyloading
 
org.LexGrid.LexBIG.Impl.History - package org.LexGrid.LexBIG.Impl.History
 
org.LexGrid.LexBIG.Impl.loaders - package org.LexGrid.LexBIG.Impl.loaders
 
org.LexGrid.LexBIG.Impl.loaders.helpers - package org.LexGrid.LexBIG.Impl.loaders.helpers
 
org.LexGrid.LexBIG.Impl.loaders.postprocessor - package org.LexGrid.LexBIG.Impl.loaders.postprocessor
 
org.LexGrid.LexBIG.Impl.namespace - package org.LexGrid.LexBIG.Impl.namespace
 
org.LexGrid.LexBIG.Impl.pagedgraph - package org.LexGrid.LexBIG.Impl.pagedgraph
 
org.LexGrid.LexBIG.Impl.pagedgraph.builder - package org.LexGrid.LexBIG.Impl.pagedgraph.builder
 
org.LexGrid.LexBIG.Impl.pagedgraph.model - package org.LexGrid.LexBIG.Impl.pagedgraph.model
 
org.LexGrid.LexBIG.Impl.pagedgraph.paging - package org.LexGrid.LexBIG.Impl.pagedgraph.paging
 
org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback - package org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
 
org.LexGrid.LexBIG.Impl.pagedgraph.query - package org.LexGrid.LexBIG.Impl.pagedgraph.query
 
org.LexGrid.LexBIG.Impl.pagedgraph.root - package org.LexGrid.LexBIG.Impl.pagedgraph.root
 
org.LexGrid.LexBIG.Impl.pagedgraph.utility - package org.LexGrid.LexBIG.Impl.pagedgraph.utility
 
org.LexGrid.LexBIG.Impl.test - package org.LexGrid.LexBIG.Impl.test
 
org.LexGrid.LexBIG.LexBIGService - package org.LexGrid.LexBIG.LexBIGService
 
org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.LoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.LoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types - package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types
 
org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors - package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences - package org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences
 
org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors - package org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors
 
org.LexGrid.LexBIG.Utility - package org.LexGrid.LexBIG.Utility
 
org.LexGrid.LexBIG.Utility.Iterators - package org.LexGrid.LexBIG.Utility.Iterators
 
org.LexGrid.LexBIG.Utility.logging - package org.LexGrid.LexBIG.Utility.logging
 
org.lexgrid.lexevs.ndfrt - package org.lexgrid.lexevs.ndfrt
 
org.lexgrid.lexevs.ndfrt.data - package org.lexgrid.lexevs.ndfrt.data
 
org.lexgrid.lexevs.ndfrt.test - package org.lexgrid.lexevs.ndfrt.test
 
org.LexGrid.LexOnt - package org.LexGrid.LexOnt
 
org.LexGrid.LexOnt.descriptors - package org.LexGrid.LexOnt.descriptors
 
org.lexgrid.loader - package org.lexgrid.loader
 
org.lexgrid.loader.constants - package org.lexgrid.loader.constants
 
org.lexgrid.loader.dao - package org.lexgrid.loader.dao
 
org.lexgrid.loader.dao.template - package org.lexgrid.loader.dao.template
 
org.lexgrid.loader.data - package org.lexgrid.loader.data
 
org.lexgrid.loader.data.association - package org.lexgrid.loader.data.association
 
org.lexgrid.loader.data.codingScheme - package org.lexgrid.loader.data.codingScheme
 
org.lexgrid.loader.data.property - package org.lexgrid.loader.data.property
 
org.lexgrid.loader.database.key - package org.lexgrid.loader.database.key
 
org.lexgrid.loader.hardcodedvalues - package org.lexgrid.loader.hardcodedvalues
 
org.lexgrid.loader.lexbigadmin - package org.lexgrid.loader.lexbigadmin
 
org.lexgrid.loader.listener - package org.lexgrid.loader.listener
 
org.lexgrid.loader.logging - package org.lexgrid.loader.logging
 
org.lexgrid.loader.meta - package org.lexgrid.loader.meta
 
org.lexgrid.loader.meta.constants - package org.lexgrid.loader.meta.constants
 
org.lexgrid.loader.meta.data.codingscheme - package org.lexgrid.loader.meta.data.codingscheme
 
org.lexgrid.loader.meta.data.property - package org.lexgrid.loader.meta.data.property
 
org.lexgrid.loader.meta.hardcodedvalues - package org.lexgrid.loader.meta.hardcodedvalues
 
org.lexgrid.loader.meta.launch - package org.lexgrid.loader.meta.launch
 
org.lexgrid.loader.meta.processor - package org.lexgrid.loader.meta.processor
 
org.lexgrid.loader.meta.processor.support - package org.lexgrid.loader.meta.processor.support
 
org.lexgrid.loader.meta.reader - package org.lexgrid.loader.meta.reader
 
org.lexgrid.loader.meta.reader.support - package org.lexgrid.loader.meta.reader.support
 
org.lexgrid.loader.meta.staging - package org.lexgrid.loader.meta.staging
 
org.lexgrid.loader.meta.staging.processor - package org.lexgrid.loader.meta.staging.processor
 
org.lexgrid.loader.meta.tasklet - package org.lexgrid.loader.meta.tasklet
 
org.lexgrid.loader.processor - package org.lexgrid.loader.processor
 
org.lexgrid.loader.processor.decorator - package org.lexgrid.loader.processor.decorator
 
org.lexgrid.loader.processor.support - package org.lexgrid.loader.processor.support
 
org.lexgrid.loader.processor.support.validator - package org.lexgrid.loader.processor.support.validator
 
org.lexgrid.loader.properties - package org.lexgrid.loader.properties
 
org.lexgrid.loader.properties.impl - package org.lexgrid.loader.properties.impl
 
org.lexgrid.loader.reader - package org.lexgrid.loader.reader
 
org.lexgrid.loader.reader.decorator - package org.lexgrid.loader.reader.decorator
 
org.lexgrid.loader.reader.support - package org.lexgrid.loader.reader.support
 
org.lexgrid.loader.rrf.constants - package org.lexgrid.loader.rrf.constants
 
org.lexgrid.loader.rrf.data.association - package org.lexgrid.loader.rrf.data.association
 
org.lexgrid.loader.rrf.data.codingscheme - package org.lexgrid.loader.rrf.data.codingscheme
 
org.lexgrid.loader.rrf.data.entity - package org.lexgrid.loader.rrf.data.entity
 
org.lexgrid.loader.rrf.data.property - package org.lexgrid.loader.rrf.data.property
 
org.lexgrid.loader.rrf.factory - package org.lexgrid.loader.rrf.factory
 
org.lexgrid.loader.rrf.fieldmapper - package org.lexgrid.loader.rrf.fieldmapper
 
org.lexgrid.loader.rrf.fieldsetter - package org.lexgrid.loader.rrf.fieldsetter
 
org.lexgrid.loader.rrf.model - package org.lexgrid.loader.rrf.model
 
org.lexgrid.loader.rrf.partition - package org.lexgrid.loader.rrf.partition
 
org.lexgrid.loader.rrf.processor - package org.lexgrid.loader.rrf.processor
 
org.lexgrid.loader.rrf.processor.support - package org.lexgrid.loader.rrf.processor.support
 
org.lexgrid.loader.rrf.reader.linetokenizer - package org.lexgrid.loader.rrf.reader.linetokenizer
 
org.lexgrid.loader.rrf.reader.support - package org.lexgrid.loader.rrf.reader.support
 
org.lexgrid.loader.rrf.staging - package org.lexgrid.loader.rrf.staging
 
org.lexgrid.loader.rrf.staging.cache.interceptor - package org.lexgrid.loader.rrf.staging.cache.interceptor
 
org.lexgrid.loader.rrf.staging.model - package org.lexgrid.loader.rrf.staging.model
 
org.lexgrid.loader.rrf.staging.populatorstep - package org.lexgrid.loader.rrf.staging.populatorstep
 
org.lexgrid.loader.rrf.staging.tasklet - package org.lexgrid.loader.rrf.staging.tasklet
 
org.lexgrid.loader.setup - package org.lexgrid.loader.setup
 
org.lexgrid.loader.staging - package org.lexgrid.loader.staging
 
org.lexgrid.loader.staging.dao - package org.lexgrid.loader.staging.dao
 
org.lexgrid.loader.staging.fieldmapper - package org.lexgrid.loader.staging.fieldmapper
 
org.lexgrid.loader.staging.fieldsetter - package org.lexgrid.loader.staging.fieldsetter
 
org.lexgrid.loader.staging.processor - package org.lexgrid.loader.staging.processor
 
org.lexgrid.loader.staging.support - package org.lexgrid.loader.staging.support
 
org.lexgrid.loader.umls - package org.lexgrid.loader.umls
 
org.lexgrid.loader.umls.constants - package org.lexgrid.loader.umls.constants
 
org.lexgrid.loader.umls.data.codingscheme - package org.lexgrid.loader.umls.data.codingscheme
 
org.lexgrid.loader.umls.data.property - package org.lexgrid.loader.umls.data.property
 
org.lexgrid.loader.umls.hardcodedvalues - package org.lexgrid.loader.umls.hardcodedvalues
 
org.lexgrid.loader.umls.launch - package org.lexgrid.loader.umls.launch
 
org.lexgrid.loader.umls.processor - package org.lexgrid.loader.umls.processor
 
org.lexgrid.loader.umls.processor.support - package org.lexgrid.loader.umls.processor.support
 
org.lexgrid.loader.umls.processor.support.filter - package org.lexgrid.loader.umls.processor.support.filter
 
org.lexgrid.loader.umls.reader.support - package org.lexgrid.loader.umls.reader.support
 
org.lexgrid.loader.wrappers - package org.lexgrid.loader.wrappers
 
org.lexgrid.loader.writer - package org.lexgrid.loader.writer
 
org.lexgrid.loader.writer.classifier - package org.lexgrid.loader.writer.classifier
 
org.lexgrid.loader.writer.decorator - package org.lexgrid.loader.writer.decorator
 
org.LexGrid.naming - package org.LexGrid.naming
 
org.LexGrid.naming.descriptors - package org.LexGrid.naming.descriptors
 
org.LexGrid.proxy - package org.LexGrid.proxy
 
org.LexGrid.relations - package org.LexGrid.relations
 
org.LexGrid.relations.descriptors - package org.LexGrid.relations.descriptors
 
org.lexgrid.resolvedvalueset - package org.lexgrid.resolvedvalueset
 
org.lexgrid.resolvedvalueset.impl - package org.lexgrid.resolvedvalueset.impl
 
org.lexgrid.usagecontext - package org.lexgrid.usagecontext
 
org.lexgrid.usagecontext.impl - package org.lexgrid.usagecontext.impl
 
org.lexgrid.usagecontext.util - package org.lexgrid.usagecontext.util
 
org.LexGrid.util - package org.LexGrid.util
 
org.LexGrid.util.assertedvaluesets - package org.LexGrid.util.assertedvaluesets
 
org.LexGrid.util.file - package org.LexGrid.util.file
 
org.LexGrid.util.ldap - package org.LexGrid.util.ldap
 
org.LexGrid.util.sql - package org.LexGrid.util.sql
 
org.LexGrid.util.sql.lgTables - package org.LexGrid.util.sql.lgTables
 
org.LexGrid.util.sql.sqlReconnect - package org.LexGrid.util.sql.sqlReconnect
 
org.LexGrid.valueSets - package org.LexGrid.valueSets
 
org.lexgrid.valuesets - package org.lexgrid.valuesets
 
org.lexgrid.valuesets.admin - package org.lexgrid.valuesets.admin
 
org.LexGrid.valueSets.descriptors - package org.LexGrid.valueSets.descriptors
 
org.lexgrid.valuesets.dto - package org.lexgrid.valuesets.dto
 
org.lexgrid.valuesets.helper - package org.lexgrid.valuesets.helper
 
org.lexgrid.valuesets.helper.compiler - package org.lexgrid.valuesets.helper.compiler
 
org.lexgrid.valuesets.impl - package org.lexgrid.valuesets.impl
 
org.lexgrid.valuesets.sourceasserted - package org.lexgrid.valuesets.sourceasserted
 
org.lexgrid.valuesets.sourceasserted.impl - package org.lexgrid.valuesets.sourceasserted.impl
 
org.LexGrid.valueSets.types - package org.LexGrid.valueSets.types
 
org.LexGrid.valueSets.types.descriptors - package org.LexGrid.valueSets.types.descriptors
 
org.LexGrid.versions - package org.LexGrid.versions
 
org.LexGrid.versions.descriptors - package org.LexGrid.versions.descriptors
 
org.LexGrid.versions.types - package org.LexGrid.versions.types
 
org.LexGrid.versions.types.descriptors - package org.LexGrid.versions.types.descriptors
 
org.mayo.edu.lgModel - package org.mayo.edu.lgModel
 
orphanedEntityQuery(SQLInterface, ArrayList<Operation>, boolean, String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
This returns a list of ConceptReferences that are orphaned.
OrphanedIndexTest - Class in org.lexevs.dao.index.operation
 
OrphanedIndexTest() - Constructor for class org.lexevs.dao.index.operation.OrphanedIndexTest
 
OUTPUT_DEFAULT_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
OUTPUT_XML_FILE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
OutputFormatInterface - Interface in edu.mayo.informatics.lexgrid.convert.formats
Interface for the output formats.
outTest() - Method in class org.LexGrid.LexBIG.admin.TestEhcacheStartUpOutputRemoval
 
OVERWRITE - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
OVERWRITE_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
Owl - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading from Owl files.
Owl(URI, URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
Owl() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.Owl
 
OWL2_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads content provided in OWL XML format.
OWL2LoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Class to load OWL2 files into the LexBIG API.
OWL2LoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
OWL2UnitTests - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
OWL2UnitTests() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
OWL_Exporter - Interface in org.LexGrid.LexBIG.Extensions.Export
Exports content to OWL XML format.
OWL_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Validates and/or loads content provided in OWL XML format.
OWL_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
OWL_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
OWL_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
OwlApi2LG - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
This is the main class containing the logic for the conversion from OWL to LexEVS..
OwlApi2LG(URI, CodingSchemeManifest, LoaderPreferences, int, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Create a new instance for conversion.
OwlApi2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
Constants used by the OwlApi loader Implementation.
OwlApi2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
OwlApi2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
This is a generic OWL Loader for OWL to LexEVS transformation.
OwlApi2LGMain(URI, CodingSchemeManifest, LoaderPreferences, boolean, int, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGMain
 
OWLLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading generic Owl files into LexBIG.
OWLLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.OWLLoader
 
OWLLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Class to load OWL files into the LexBIG API.
OWLLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
OWLLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class OWLLoaderPreferences.
OWLLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
 
OWLLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class OWLLoaderPreferencesDescriptor.
OWLLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.OWLLoaderPreferencesDescriptor
 
OWLPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load OWL loader preferences from an XML file
OWLPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OWLPreferenceLoader
Constructor for creating an OWLPreferenceLoader.
OwlRdfExporterImpl - Class in org.LexGrid.LexBIG.Impl.exporters
Exports content to OWL/RDF format.
OwlRdfExporterImpl() - Constructor for class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
OWLUnitTests - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
OWLUnitTests() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWLUnitTests
 

P

P_body - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
P_head - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
P_nonGen - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
P_oldAuthor - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
P_oldComment - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
padInt(int, char, int, boolean) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
padString(String, char, int, boolean) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
padStringBuffer(StringBuffer, char, int, boolean) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
page() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Page.
page() - Method in class org.lexevs.paging.AbstractPageableIterator
Page.
PAGE - Static variable in class org.lexevs.tree.evstree.ChildPagingEvsTreeConverter
Deprecated.
The Constant PAGE.
PAGE - Static variable in class org.lexevs.tree.json.ChildPagingJsonConverter
Deprecated.
The Constant PAGE.
PAGE - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.evstree.ChildPagingEvsTreeConverter
The Constant PAGE.
PAGE - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.tree.json.ChildPagingJsonConverter
The Constant PAGE.
PAGE_SIZE - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
The PAG e_ size.
PAGE_SIZE - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
pageChildren() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Page children.
pageChildren() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Page children.
PagedGraphUtils - Class in org.LexGrid.LexBIG.Impl.pagedgraph.utility
The Class PagedGraphUtils.
PagedGraphUtils() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.utility.PagedGraphUtils
 
pageEntities(String, String, Entities) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
Page entities.
pageEntities(String, String, Entities) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
pageIfNecessary() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
Page if necessary.
pageIfNecessary(int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
pageIfNecessary() - Method in class org.lexevs.paging.AbstractPageableIterator
Page if necessary.
pageIfNecessary(int) - Method in class org.lexevs.paging.AbstractPageableIterator
 
pageIfNecessary() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Page if necessary.
pageIfNecessary() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Page if necessary.
pageOnSize(int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
pageOnSize(int) - Method in class org.lexevs.paging.AbstractPageableIterator
 
pager - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
The pager.
Pager() - Constructor for class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.Pager
Instantiates a new pager.
Pager() - Constructor for class org.lexevs.paging.AbstractPageableIterator.Pager
Instantiates a new pager.
pageRelations(String, String, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractPagingCodingSchemeInserter
Page relations.
pageRelations(String, String, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
pageSize - Variable in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
The page size.
PagingChildNodeIterator - Class in org.lexevs.tree.dao.iterator
Deprecated.
PagingChildNodeIterator() - Constructor for class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Instantiates a new paging child node iterator.
PagingChildNodeIterator(LexEvsTreeDao, String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int) - Constructor for class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Instantiates a new paging child node iterator.
PagingChildNodeIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator
The Class PagingChildNodeIterator.
PagingChildNodeIterator() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Instantiates a new paging child node iterator.
PagingChildNodeIterator(LexEvsTreeDao, String, CodingSchemeVersionOrTag, String, String, LexEvsTreeDao.Direction, List<String>, int) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Instantiates a new paging child node iterator.
PagingChildNodeIteratorTest - Class in org.lexevs.tree.dao.iterator
 
PagingChildNodeIteratorTest() - Constructor for class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
PagingChildNodeIteratorTest - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator
 
PagingChildNodeIteratorTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
PagingCodedNodeGraphImpl - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class PagingCodedNodeGraphImpl.
PagingCodedNodeGraphImpl() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl
 
PagingCodedNodeGraphImpl(String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl
Instantiates a new paging coded node graph impl.
PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy - Enum in org.LexGrid.LexBIG.Impl.pagedgraph
 
PagingCodingSchemeInserter - Interface in edu.mayo.informatics.lexgrid.convert.inserter
The Interface PagingCodingSchemeInserter.
Pair<T> - Class in org.lexgrid.loader.wrappers
The Class Pair.
Pair(T, T) - Constructor for class org.lexgrid.loader.wrappers.Pair
Instantiates a new pair.
PAR - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
ParameterizedListIdSetter<I> - Interface in org.lexgrid.loader.data.property
The Interface ParameterizedListIdSetter.
ParameterizedSequentialIdSetter - Class in org.lexgrid.loader.data.property
The Class ParameterizedSequentialIdSetter.
ParameterizedSequentialIdSetter() - Constructor for class org.lexgrid.loader.data.property.ParameterizedSequentialIdSetter
 
ParameterKey - Annotation Type in org.lexevs.cache.annotation
The Interface CacheMethod.
parameters_ - Variable in class org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model.GraphQuestionQuery
The parameters_.
parameters_ - Variable in class org.LexGrid.LexBIG.Impl.helpers.GraphQuestionQuery
 
ParentIdHolder<T> - Class in org.lexgrid.loader.wrappers
 
ParentIdHolder() - Constructor for class org.lexgrid.loader.wrappers.ParentIdHolder
 
ParentIdHolder(CodingSchemeIdSetter, String, T) - Constructor for class org.lexgrid.loader.wrappers.ParentIdHolder
 
ParentUidReferencingId(String, String, String) - Constructor for class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.ParentUidReferencingId
Instantiates a new parent uid referencing id.
parse(OptionHolder) - Static method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.FilterParser
 
parse(LexBIGService, String, String, CommandLine) - Static method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.util.FilterParser
 
parse(String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
parseAsSimpleKeyValue(String, String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
parseAsSimpleKeyValue(String, String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
parseAsSimpleKeyValueWithLimit(String, String, int) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
parseDocument(String, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
parseDocument(String, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
parseEffectiveDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
parseFloatFromTableVersion(SQLInterface) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Returns the float representation of the current table version.
parseFloatFromTableVersion(SQLInterface) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Returns the float representation of the current table version.
parseLineWithXRefs(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
parseQueryForField(String, String) - Method in class org.LexGrid.LexBIG.Impl.dataAccess.IndexQueryParserFactory
 
parseStringToVersion(String) - Static method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Parses the string to version.
parseStringToVersion(String) - Static method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
Parses the string to version.
parseValue(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
partition(int) - Method in class org.lexgrid.loader.rrf.partition.RrfFilePartitioner
 
passFilters(ResolvedConceptReference, Filter[]) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Pass filters.
password - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
password - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
password - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The password.
PasswordEncryptor - Class in org.LexGrid.LexBIG.admin
 
PasswordEncryptor() - Constructor for class org.LexGrid.LexBIG.admin.PasswordEncryptor
 
PATH_DELIMITER - Static variable in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
pathToRoot - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
PathToRootResolver - Interface in org.lexevs.tree.dao.pathtoroot
Deprecated.
PathToRootResolver - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot
The Interface PathToRootResolver.
PathToRootTreeServiceImpl - Class in org.lexevs.tree.service
Deprecated.
PathToRootTreeServiceImpl() - Constructor for class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
PathToRootTreeServiceImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.service
The Class PathToRootTreeServiceImpl.
PathToRootTreeServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
PathToRootTreeServiceImplTest - Class in org.lexevs.tree.service
 
PathToRootTreeServiceImplTest() - Constructor for class org.lexevs.tree.service.PathToRootTreeServiceImplTest
 
PathToRootTreeServiceImplTest - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.service
 
PathToRootTreeServiceImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImplTest
 
pendingOperations_ - Variable in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
persistCodedNodeSet(String, CodedNodeSet) - Method in class org.lexgrid.valuesets.helper.compiler.AbstractCachingValueSetDefinitionCompilerDecorator
Persist coded node set.
persistCodedNodeSet(String, CodedNodeSet) - Method in class org.lexgrid.valuesets.helper.compiler.FileSystemCachingValueSetDefinitionCompilerDecorator
Persist coded node set.
persistCodingSchemeToDatabase(CodingScheme) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
persistCodingSchemeToDatabase(CodingSchemeInserter, CodingScheme) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
PersistenceScheme - Interface in org.lexevs.dao.database.scheme
The Interface PersistenceScheme.
PersistenceSchemeFactory - Class in org.lexevs.dao.database.scheme
A factory for creating PersistenceScheme objects.
PersistenceSchemeFactory() - Constructor for class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
PhraseSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class PhraseSearch.
PhraseSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.PhraseSearch
 
PickList - Class in org.lexgrid.lexevs.ndfrt.data
 
PickList() - Constructor for class org.lexgrid.lexevs.ndfrt.data.PickList
 
pickList - Variable in class org.lexgrid.lexevs.ndfrt.data.PropertyDef
 
pickList - Variable in class org.lexgrid.lexevs.ndfrt.data.QualifierDef
 
PICKLIST - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
PICKLIST_ENTRYNODE_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
PICKLIST_ITEM - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
PICKLIST_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
The PICKLIS t_ namespace.
PickListContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Pick List SWT Table.
PickListContentProvider(LB_VSD_GUI) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PickListContentProvider
 
PickListDao - Interface in org.lexevs.dao.database.access.valuesets
The Interface PickListDao.
PickListDefinition - Class in org.LexGrid.valueSets
An ordered list of entity codes and corresponding presentations drawn from a value set definition.
PickListDefinition() - Constructor for class org.LexGrid.valueSets.PickListDefinition
 
PickListDefinitionDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListDefinitionDescriptor.
PickListDefinitionDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListDefinitionDescriptor
 
PickListDefinitions - Class in org.LexGrid.valueSets
A collection of pick list definitions.
PickListDefinitions() - Constructor for class org.LexGrid.valueSets.PickListDefinitions
 
PickListDefinitionsDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListDefinitionsDescriptor.
PickListDefinitionsDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListDefinitionsDescriptor
 
PickListDefinitionService - Interface in org.lexevs.dao.database.service.valuesets
The Interface PickListService.
pickListDefinitionToRegistryEntry(String, String) - Static method in class org.lexevs.registry.utility.RegistryUtility
Pick List Definition to registry entry.
PickListEntry - Class in org.LexGrid.valueSets
An entity code and corresponding textual representation.
PickListEntry() - Constructor for class org.LexGrid.valueSets.PickListEntry
 
PickListEntryDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListEntryDescriptor.
PickListEntryDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListEntryDescriptor
 
PickListEntryExclusion - Class in org.LexGrid.valueSets
An entity code that is explicitly excluded from a pick list.
PickListEntryExclusion() - Constructor for class org.LexGrid.valueSets.PickListEntryExclusion
 
PickListEntryExclusionDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListEntryExclusionDescriptor.
PickListEntryExclusionDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListEntryExclusionDescriptor
 
PickListEntryNode - Class in org.LexGrid.valueSets
An inclusion (pickListEntry) or exclusion (pickListEntryExclusion) in a pick list definition
PickListEntryNode() - Constructor for class org.LexGrid.valueSets.PickListEntryNode
 
PickListEntryNodeBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
 
PickListEntryNodeBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
PickListEntryNodeChoice - Class in org.LexGrid.valueSets
Class PickListEntryNodeChoice.
PickListEntryNodeChoice() - Constructor for class org.LexGrid.valueSets.PickListEntryNodeChoice
 
PickListEntryNodeChoiceDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListEntryNodeChoiceDescriptor.
PickListEntryNodeChoiceDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListEntryNodeChoiceDescriptor
 
PickListEntryNodeDao - Interface in org.lexevs.dao.database.access.valuesets
 
PickListEntryNodeDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PickListEntryNodeDescriptor.
PickListEntryNodeDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PickListEntryNodeDescriptor
 
PickListEntryNodeService - Interface in org.lexevs.dao.database.service.valuesets
The Interface PickListEntryNodeService.
pickListItem - Variable in class org.lexgrid.lexevs.ndfrt.data.PickList
 
PickListItem - Class in org.lexgrid.lexevs.ndfrt.data
 
PickListItem() - Constructor for class org.lexgrid.lexevs.ndfrt.data.PickListItem
 
PickListLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Pick List SWT table view.
PickListLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
PLAIN_FORMAT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PLAIN_FORMAT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PLAIN_FORMAT_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PLAIN_FORMAT_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PLDisplayResults - Class in org.LexGrid.LexBIG.gui.displayResults
This class displays the results of a CodedNodeSet query in a shell.
PLDisplayResults(LB_VSD_GUI, ResolvedPickListEntryList, SortOptionList, boolean, boolean, boolean, int, int, ConceptReference) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
PLDisplayResults(LB_VSD_GUI, ResolvedPickListEntryList, SortOptionList) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.PLDisplayResults
 
PLEntryNodeSortUtil - Class in org.lexgrid.valuesets.helper
 
PLEntryNodeSortUtil() - Constructor for class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
PluginRetriever - Class in org.LexGrid.LexBIG.gui.plugin
PluginRetriever loads all the plugins for the LexBig UI from a specified top-level directory.
PluginRetriever(String) - Constructor for class org.LexGrid.LexBIG.gui.plugin.PluginRetriever
Construct a PluginRetriever with a base directory other than the default.
PluginRetriever() - Constructor for class org.LexGrid.LexBIG.gui.plugin.PluginRetriever
Construct a PluginRetriever with a base directory of "plugins".
pointsToRoot(ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
Points to root.
pointsToTail(ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
Points to tail.
populateAllInferredRelations(CodingScheme, Map, Map, Map, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
Populates the relations container with all inferred relations for the coding scheme.
populateCodingScheme(String, String, String, String, long, String, List<String>, List<Source>, Text, Mappings, Properties, Entities, List<Relations>) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
populateConcepts(CodingScheme, Map, Map, Map, Map) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
Populates the concepts container for the coding scheme.
populateNoInferredRelations(CodingScheme, Map, Map, Map, Map, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
Populates the relations container with no inferred relations for the coding scheme.
populateStagingTable() - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Populate staging table.
populateSupportedAssociations(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
populateSupportedAssociations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Detect and register association information to the array of supported associations maintained by the loader.
populateSupportedAssociations(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
populateSupportedHierarchy(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
populateSupportedProperties(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
populateSupportedProperties(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
populateSupportedRepresentationalForms(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
populateSupportedSources(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
populateSupportedSources(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
PopulatorStepFactory - Class in org.lexgrid.loader.rrf.staging.populatorstep
A factory for creating PopulatorStep objects.
PopulatorStepFactory() - Constructor for class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
 
port - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
pos - Variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
PostCodingSchemeInsertEvent - Class in org.lexevs.dao.database.service.event.codingscheme
The Class CodingSchemeInsertEvent.
PostCodingSchemeInsertEvent(CodingScheme) - Constructor for class org.lexevs.dao.database.service.event.codingscheme.PostCodingSchemeInsertEvent
Instantiates a new coding scheme insert event.
postLoadAssociationDefinitions(CodingScheme, CsmfAssociationDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
postMarshal(Object) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
postMarshal(Object) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.StreamingLexGridMarshalListener
 
postProcessAfterInitialization(Object, String) - Method in class org.lexevs.dao.database.spring.DialectSettingPostProcessor
 
postProcessBeforeInitialization(Object, String) - Method in class org.lexevs.dao.database.spring.DialectSettingPostProcessor
 
PostProcessorLauncher - Class in org.LexGrid.LexBIG.gui.load
 
PostProcessorLauncher(LB_GUI, AbsoluteCodingSchemeVersionReference) - Constructor for class org.LexGrid.LexBIG.gui.load.PostProcessorLauncher
 
PostProcessorValidatingDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
The Class PostProcessorValidatingDecorator.
PostProcessorValidatingDecorator(ItemProcessor<I, O>) - Constructor for class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
Instantiates a new post processor validating decorator.
PreCodingSchemeInsertEvent - Class in org.lexevs.dao.database.service.event.codingscheme
The Class CodingSchemeInsertEvent.
PreCodingSchemeInsertEvent(CodingScheme) - Constructor for class org.lexevs.dao.database.service.event.codingscheme.PreCodingSchemeInsertEvent
Instantiates a new coding scheme insert event.
predicateUID - Variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
PreferenceLoader - Interface in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces
 
PreferenceLoaderConstants - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences
Constants for XML file based preferences loaders
PreferenceLoaderConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
PreferenceLoaderFactory - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences
 
PreferenceManager - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
 
PreferenceManager(LoaderPreferences) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
PreferenceManager - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
 
PreferenceManager(LoaderPreferences) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
PreferredSetter<I> - Interface in org.lexgrid.loader.data.property
The Interface PreferredSetter.
PreFilteringListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class PreFilteringListProcessor.
PreFilteringListProcessor() - Constructor for class org.lexgrid.loader.processor.PreFilteringListProcessor
 
PreFilteringListProcessorTest - Class in org.lexgrid.loader.processor
The Class PreFilteringListProcessorTest.
PreFilteringListProcessorTest() - Constructor for class org.lexgrid.loader.processor.PreFilteringListProcessorTest
 
prefix - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
prefix - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The prefix.
prefix - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The prefix.
prefix - Variable in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
The prefix.
PREFIX - Static variable in class org.lexgrid.loader.properties.impl.PropertiesFactory
The PREFIX.
PREFIX_PLACEHOLDER - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
The Constant PREFIX_PLACEHOLDER.
PREFIX_PLACEHOLDER - Static variable in class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
The PREFI x_ placeholder.
PREFIX_PLACEHOLDER - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The PREFI x_ placeholder.
PrefixedParameter - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameter.
PrefixedParameter() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameter
Instantiates a new prefixed parameter.
PrefixedParameter(String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameter
Instantiates a new prefixed parameter.
PrefixedParameterCollection - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterTuple.
PrefixedParameterCollection() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollection
Instantiates a new prefixed parameter tuple.
PrefixedParameterCollection(String, String, Collection<String>) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollection
Instantiates a new prefixed parameter tuple.
PrefixedParameterCollectionTriple - Class in org.lexevs.dao.database.ibatis.parameter
 
PrefixedParameterCollectionTriple() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTriple
 
PrefixedParameterCollectionTriple(String, String, Collection<String>, Collection<String>, Collection<String>) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTriple
 
PrefixedParameterCollectionTuple - Class in org.lexevs.dao.database.ibatis.parameter
 
PrefixedParameterCollectionTuple() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTuple
 
PrefixedParameterCollectionTuple(String, String, Collection<String>, Collection<String>) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTuple
 
PrefixedParameterQuad - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterQuad.
PrefixedParameterQuad() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuad
Instantiates a new prefixed parameter quad.
PrefixedParameterQuad(String, String, String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuad
Instantiates a new prefixed parameter quad.
PrefixedParameterQuint - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterQuad.
PrefixedParameterQuint() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuint
 
PrefixedParameterQuint(String, String, String, String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuint
 
PrefixedParameterSextet - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterQuad.
PrefixedParameterSextet() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterSextet
 
PrefixedParameterSextet(String, String, String, String, String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterSextet
 
PrefixedParameterTriple - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterTriple.
PrefixedParameterTriple() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTriple
Instantiates a new prefixed parameter triple.
PrefixedParameterTriple(String, String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTriple
Instantiates a new prefixed parameter triple.
PrefixedParameterTuple - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedParameterTuple.
PrefixedParameterTuple() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTuple
Instantiates a new prefixed parameter tuple.
PrefixedParameterTuple(String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTuple
Instantiates a new prefixed parameter tuple.
PrefixedSequentialIdSetter - Class in org.lexgrid.loader.data.property
The Class PrefixedSequentialIdSetter.
PrefixedSequentialIdSetter() - Constructor for class org.lexgrid.loader.data.property.PrefixedSequentialIdSetter
 
PrefixedSequentialIdSetterTest - Class in org.lexgrid.loader.data.property
The Class PrefixedSequentialIdSetterTest.
PrefixedSequentialIdSetterTest() - Constructor for class org.lexgrid.loader.data.property.PrefixedSequentialIdSetterTest
 
PrefixedTableParameterBean - Class in org.lexevs.dao.database.ibatis.parameter
The Class PrefixedTableParameterBean.
PrefixedTableParameterBean() - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
Instantiates a new prefixed table parameter bean.
PrefixedTableParameterBean(String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
Instantiates a new prefixed table parameter bean.
PrefixFactory - Class in org.lexevs.dao.database.prefix
A factory for creating Prefix objects.
PrefixFactory() - Constructor for class org.lexevs.dao.database.prefix.PrefixFactory
 
PrefixInterceptor - Class in org.lexevs.dao.database.hibernate.prefix
Hibernate Interceptor used to modify the SQL query sent to the database.
PrefixInterceptor() - Constructor for class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
Instantiates a new prefix interceptor.
PrefixInterceptor(PrefixResolver) - Constructor for class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
Instantiates a new prefix interceptor.
PrefixResolver - Interface in org.lexevs.dao.database.prefix
The Interface PrefixResolver.
PrefixResolver - Interface in org.lexevs.tree.dao.prefixresolver
Deprecated.
PrefixResolver - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.dao.prefixresolver
The Interface PrefixResolver.
prefLabel - Static variable in class org.lexgrid.exporter.owlrdf.Skos
 
prefs - Variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
preLoadAddLocalNames(CodingScheme, CsmfLocalName[]) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
This method adds the LocalNames details from manifest into CodingScheme.
preLoadAddSources(CodingScheme, CsmfSource[]) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
preLoadAddSupportedMappings(CodingScheme, CsmfMappings) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
preLoadAssociationDefinitions(CodingScheme, CsmfAssociationDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.utility.ManifestUtil
 
preMarshal(Object) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
preMarshal(Object) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.StreamingLexGridMarshalListener
 
prepareCall(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareCall(String, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareCall(String, int, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareCSClass(OBOResourceReader, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
prepareRoot(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
prepareRoots(ResolvedConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
prepareStatement(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareStatement(String, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareStatement(String, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareStatement(String, int, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareStatement(String, int[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
prepareStatement(String, String[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
preProcessCodingSchemeNotSureWhy(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGMain
 
preprocessSourceHierarchyData() - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
preprocessSourceHierarchyData(String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
preprocessSourceHierarchyData() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
preprocessSourceHierarchyData(String, String, String, String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
preprocessSourceHierarchyData() - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
preprocessSourceHierarchyData(String, String, String, String, String, String) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
preprocessSourceHierarchyData() - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
Initializes the hierarchy service for default NCIt values
preprocessSourceHierarchyData(String, String, String, String, String, String) - Method in interface org.lexgrid.valuesets.sourceasserted.SourceAssertedValueSetHierarchyServices
 
Presentation - Class in org.LexGrid.concepts
A property ths represents or designates the meaning of the entityCode.
Presentation() - Constructor for class org.LexGrid.concepts.Presentation
 
presentationContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
PresentationDescriptor - Class in org.LexGrid.concepts.descriptors
Class PresentationDescriptor.
PresentationDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.PresentationDescriptor
 
presentationExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
presentationFormat - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
PresentationPropertyDataTestIT - Class in edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary
 
PresentationPropertyDataTestIT() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
 
PreValidatingInserterDecorator - Class in edu.mayo.informatics.lexgrid.convert.inserter
The Class PreValidatingInserterDecorator.
PreValidatingInserterDecorator(CodingSchemeInserter) - Constructor for class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
Instantiates a new pre validating inserter decorator.
PrimaryKeyIncrementer - Interface in org.lexevs.dao.database.key.incrementer
The Interface PrimaryKeyIncrementer.
PrimaryKeyIncrementer.KeyType - Enum in org.lexevs.dao.database.key.incrementer
The Enum KeyType.
PrimaryKeyIncrementerFactory - Class in org.lexevs.dao.database.key.incrementer
A factory for creating PrimaryKeyIncrementer objects.
PrimaryKeyIncrementerFactory() - Constructor for class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
 
PrimaryKeyIncrementerFactory.KeyIncrementerThreadLocal - Class in org.lexevs.dao.database.key.incrementer
 
PRIMITIVE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
print(Class<?>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.Database
 
print(DatabaseRecord) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.Database
 
print(LexEvsTreeNode) - Static method in class org.lexevs.tree.utility.PrintUtility
Deprecated.
Prints the.
print(List<LexEvsTreeNode>) - Static method in class org.lexevs.tree.utility.PrintUtility
Deprecated.
Prints the.
print(int, String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
Handle one level of the tree, and recurse up to the indicated depth.
print(LexEvsTreeNode) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.PrintUtility
Prints the.
print(List<LexEvsTreeNode>) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.PrintUtility
Prints the.
print(AssociationList) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(AssociationList, int) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(ResolvedConceptReference) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(AssociatedConcept) - Static method in class org.LexGrid.util.PrintUtility
 
print(ResolvedConceptReferenceList) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(CodingSchemeSummary) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(CodingSchemeRenderingList) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(ExtensionDescription) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(ExtensionDescriptionList) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(CodingScheme) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(Entity) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(Object) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(ResolvedConceptReferencesIterator) - Static method in class org.LexGrid.util.PrintUtility
 
print(CodedNodeSet) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(CodedNodeGraph) - Static method in class org.LexGrid.util.PrintUtility
 
print(CodedNodeGraph, ConceptReference, SortOptionList) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(LexBIGServiceConvenienceMethods) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(LexBIGServiceManager) - Static method in class org.LexGrid.util.PrintUtility
Prints the.
print(SimpleMemUsageReporter.Snapshot) - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Convenience printer
print(SimpleMemUsageReporter.Snapshot, String) - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Convenience printer with description
printAncestors(LexBIGServiceConvenienceMethodsImpl, String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.example.GetConceptReferencesClosure
 
printChain(LexBIGServiceConvenienceMethods, String, String, CodingSchemeVersionOrTag, ResolvedConceptReferenceList, int) - Method in class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
Handles recursive display of hierarchical relations for the given set of nodes, up to the maximum specified depth.
printChain(Association, int) - Method in class org.LexGrid.LexBIG.example.ListHierarchyPathToRoot
Displays the given concept chain, taking into account any branches that might be imbedded.
printChainForNode(LexBIGServiceConvenienceMethods, String, String, CodingSchemeVersionOrTag, ResolvedConceptReference, int, int, String) - Method in class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
Handles recursive display of hierarchy for an individual node, up to the maximum specified depth.
printCode(String, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Display name and description information for the given CUI.
printContext(ResolvedConceptReference, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Recursively display each source-asserted hierarchy that the code participates in, based on tagging by HCD qualifier, with additional information.
printDescendants(LexBIGServiceConvenienceMethodsImpl, String, CodingSchemeVersionOrTag, String, String) - Method in class org.LexGrid.LexBIG.example.GetConceptReferencesClosure
 
printError(Exception) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
printError() - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
printFrom(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
Display relations to the given code from other concepts.
printFrom(String, String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodes
Display relations from the given code to other concepts.
printFrom(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
Display relations from the given code to other concepts.
printHeader(ResolvedConceptReference, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Prints formatted text providing context for the given item including CUI, SAB, AUI, and Text.
printHierarchies(LexBIGService, String, CodingSchemeVersionOrTag, int, String) - Method in class org.LexGrid.LexBIG.example.ListHierarchy
Discovers all registered hierarchies for the coding scheme and display each in turn.
printHierarchyBranch(LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, ResolvedConceptReference, int, int, String) - Method in class org.LexGrid.LexBIG.example.ListHierarchy
Handles recursive display of hierarchy for the given start node, up to the maximum specified depth.
printIt() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
printIt() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
printIt() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
printJobProperties(Properties) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
printLevelNext(LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, String, int, int) - Method in class org.LexGrid.LexBIG.example.ListHierarchyByCode
Displays descendants for a code within the specified hierarchy up to the given distance or until all paths to leaf nodes is exhausted, recursing as necessary.
printLevelPrev(LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, String, int, int) - Method in class org.LexGrid.LexBIG.example.ListHierarchyByCode
Displays ancestors for a code within the specified hierarchy up to the given distance or until paths to root nodes are exhausted, recursing as necessary.
printNeighborhood(String, CodingSchemeVersionOrTag, ResolvedConceptReference, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Prints formatted text with the CUIs and AUIs of neighboring concepts for the requested SAB.
printPath(FindUMLSContextsForCUI.TreeItem, String, int, Map<FindUMLSContextsForCUI.TreeItem, Integer>) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Prints the given item, recursing to print all children.
printPath(List<ResolvedConceptReference>) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
Print the description of concepts in the path, indenting for each represented level.
printPropertyLinks(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
Display Property Link relations.
printProps(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
Display properties for the given code.
printReport(BidiMap) - Method in class org.LexGrid.LexBIG.example.ScoreTerm
Display results to the user.
printSources(String, String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedNodesForTermAndAssoc
Display association sources for which the given term participates as target.
printStartLogInfo(Properties, String, String) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
printTargets(String, String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedNodesForTermAndAssoc
Display association targets for which the given term participates as source.
printText(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Print code and text for all text presentations associated with the given node reference.
printText(ResolvedConceptReference, boolean, String, int) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Print code and text for all text presentations associated with the given concept reference.
printText(ResolvedConceptReference, String[], int) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Print code and text for all text presentations associated with the given concept reference.
printTo(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
Display relations from the given code to other concepts.
printTo(String, String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodes
Display relations to the given code from other concepts.
printTo(String, LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
Display relations to the given code from other concepts.
printTree(LexEVSTreeItem, int) - Static method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
printTree(BuildTreeForCode.TreeItem, String, int) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Prints the given tree item, recursing through all branches.
printTree(BuildTreeForMetaCodeBySource.TreeItem, String, int) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Prints the given tree item, recursing through all branches.
PrintUtility - Class in org.lexevs.tree.utility
Deprecated.
PrintUtility() - Constructor for class org.lexevs.tree.utility.PrintUtility
Deprecated.
 
PrintUtility - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.utility
The Class PrintUtility.
PrintUtility() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.PrintUtility
 
PrintUtility - Class in org.LexGrid.util
The Class PrintUtility.
PrintUtility() - Constructor for class org.LexGrid.util.PrintUtility
 
PRIORITIZED_COMMENT_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PRIORITIZED_COMMENT_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PRIORITIZED_DEFINITION_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PRIORITIZED_DEFINITION_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PRIORITIZED_PRESENTATION_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PRIORITIZED_PRESENTATION_NAMES - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PrioritizedCommentNames - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class PrioritizedCommentNames.
PrioritizedCommentNames() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
PrioritizedCommentNamesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class PrioritizedCommentNamesDescriptor.
PrioritizedCommentNamesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedCommentNamesDescriptor
 
PrioritizedDefinitionNames - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class PrioritizedDefinitionNames.
PrioritizedDefinitionNames() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
PrioritizedDefinitionNamesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class PrioritizedDefinitionNamesDescriptor.
PrioritizedDefinitionNamesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedDefinitionNamesDescriptor
 
PrioritizedPresentationNames - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class PrioritizedPresentationNames.
PrioritizedPresentationNames() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
PrioritizedPresentationNamesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class PrioritizedPresentationNamesDescriptor.
PrioritizedPresentationNamesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.PrioritizedPresentationNamesDescriptor
 
proceed(T) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
proceed(MethodInvocation) - Method in class org.lexevs.cache.MethodCachingInterceptor
 
proceed(ProceedingJoinPoint) - Method in class org.lexevs.cache.MethodCachingProxy
 
process(File) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.postprocessor.FileFormatter
 
process(CompositeReaderChunk<CompositeReaderChunk<Mrconso, Mrsat>, CompositeReaderChunk<Mrsty, Mrdef>>) - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
process() - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
 
process(List<I>) - Method in class org.lexgrid.loader.processor.AbstractListProcessor
 
process(List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
 
process(List<I>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
 
process(I) - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
 
process(List<I>) - Method in class org.lexgrid.loader.processor.BasicListProcessor
 
process(I) - Method in class org.lexgrid.loader.processor.ClassifierCompositeProcessor
 
process(I) - Method in class org.lexgrid.loader.processor.CombiningListProcessor
 
process(I) - Method in class org.lexgrid.loader.processor.CombiningProcessor
 
process(List<I>) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
process(List<I>) - Method in class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
 
process(List<I>) - Method in class org.lexgrid.loader.processor.decorator.ListToSingleItemProcessorDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.decorator.SingleItemToListProcessorDecorator
 
process(I) - Method in class org.lexgrid.loader.processor.EntityProcessor
 
process(List<I>) - Method in class org.lexgrid.loader.processor.HighestRankingListProcessor
 
process(T) - Method in class org.lexgrid.loader.processor.NoOpProcessor
 
process(ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
process(I, List<I>) - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
Process.
process(I, List<I>) - Method in class org.lexgrid.loader.reader.SizeLimitedBufferedGroupItemReader
 
process(Mrhier) - Method in class org.lexgrid.loader.rrf.processor.AbstractMrhierProcessor
 
process(List<Mrconso>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
process(List<Mrdoc>) - Method in class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
 
process(Mrdoc) - Method in class org.lexgrid.loader.rrf.processor.MrdocRelationNameProcessor
 
process(I) - Method in class org.lexgrid.loader.staging.processor.AbstractKeyValueProcessor
 
process(Mrsab) - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
 
process(File) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
process(File) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
PROCESS_COMPLEX_PROP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROCESS_COMPLEX_PROP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
processAllAnnotationProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
processAllConceptsAndProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method is responsible for processing of all the OWL concepts.
processAllConceptsAndProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method is responsible for processing of all the OWL concepts.
processAllConceptsRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
processAllConceptsRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
processAllInstanceAndProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Process the instance information in the ontology.
processAllInstanceAndProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Process the instance information in the ontology.
processAllInstanceRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
processAllInstanceRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
processAssociationData(XMLDaoServiceAdaptor, AssociationSource, AssociationData) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processAssociations(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
processCodingSchemeAssociation(boolean, XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeAssociationRevision(boolean, XMLDaoServiceAdaptor, AssociationSource, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeEntity(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeEntityRevision(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeMetadata(XMLDaoServiceAdaptor, Object, Object, CodingSchemeManifest) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeMetadata(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeMetadataRevision(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemePropertyRevision(XMLDaoServiceAdaptor, CodingScheme, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processCodingSchemeSystemReleaseRevision(XMLDaoServiceAdaptor, Object, Object, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processConcepts(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method is responsible for processing of all the OWL concepts.
processed - Static variable in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
processEnitities(URI, LgMessageDirectorIF, boolean) - Method in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
processEntitiesForExistingMappingScheme(CodingScheme, AssociationSource[], String, String, String, String, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
processEntitiesToDefinition(List<Node>, String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
processEntityPropertyRevision(XMLDaoServiceAdaptor, CodingScheme, Object, Property) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processEquivalentClassExp(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
processFMA(CodingScheme, KnowledgeBase) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGDynamicMapHolders
 
processForDiff(String, String, HashMap<String, String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
ProcessingListDecorator<I,O> - Class in org.lexgrid.loader.reader.decorator
The Class ProcessingListDecorator.
ProcessingListDecorator(List<I>) - Constructor for class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
Instantiates a new processing list decorator.
processInstances(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Process the instance information in the ontology.
processMappingEntities(AssociationSource[], String, String, String, String, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
processMappingsForAssociationMappings(String, String, String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
processMappingsForExistingCodingScheme(CodingScheme, String, String, String, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
processMrMapBean(String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
processMrMapRow(String[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
processMrMapToLexGrid(Map.Entry<String, Relations>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
processMrSatBean(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
processMrSatRow(String[], int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
processMrSatRow(String[], int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
processMrSatRow(String[], int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
ProcessMrSatRowTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
ProcessMrSatRowTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.ProcessMrSatRowTest
 
processMrSatToRelation(MrSat, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
processMrSatToRelation(MrSat, Relations) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
ProcessMrSatToRelationsTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
ProcessMrSatToRelationsTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.ProcessMrSatToRelationsTest
 
processor - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
processOWL() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Create and populate the EMF representation of the coding scheme.
processOWL() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Create and populate the EMF representation of the coding scheme.
processOWLDataProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method determines the domain and ranges for the OWL DataProperties.
processOWLDatatypeProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method determines the domain and ranges for the OWL Datatype properties.
processOWLObjectProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method determines the domain and ranges for the OWL Object properties.
processOWLObjectProperties(SimpleMemUsageReporter.Snapshot) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method determines the domain and ranges for the OWL Object properties.
processPathForVersion(URI) - Method in class org.lexgrid.lexevs.ndfrt.NdfrtXMLProcessor
 
processPickListDefinition(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processPickListDefinition(XMLDaoServiceAdaptor, Object, Mappings, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processPickListDefinitionSystemReleaseRevision(XMLDaoServiceAdaptor, Object, Object, Mappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processPickListMappings(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processPickListtDefinitionRevision(XMLDaoServiceAdaptor, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processRelation(String) - Method in class org.lexgrid.loader.rrf.reader.support.MrrelRelationBasedSkipPolicy
Process relation.
processRelationsContainers(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
processRelationshipRestrictions() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
processRelationsPropertyRevision(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processRelationsRevision(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processRestriction(OWLRestriction, AssociationSource, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
processRestriction(OWLRestriction, AssociationSource, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
processRevisionMetadata(XMLDaoServiceAdaptor, Revision) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processRootNode(O) - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Process root node.
processRootNode(O) - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Process root node.
processRow(Mrsab) - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
Process row.
processRubric(Rubric) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces.DefaultRubricProcessorImpl
 
processRubric(Rubric) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces.ModifierClassRubricProcessorImpl
 
processRubric(Rubric) - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces.RubricProcessor
 
ProcessRunner - Interface in org.LexGrid.LexBIG.Impl.loaders
 
ProcessState - Enum in org.LexGrid.LexBIG.DataModel.InterfaceElements.types
An enumeration of possible reported values for process state.
processStateConverter(BatchStatus) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
ProcessStateDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors
Class ProcessStateDescriptor.
ProcessStateDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.ProcessStateDescriptor
 
ProcessStatus - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Reports the state of LexBIG runtime operations.
ProcessStatus() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
 
ProcessStatusDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class ProcessStatusDescriptor.
ProcessStatusDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.ProcessStatusDescriptor
 
processSystemReleaseMetadata(XMLDaoServiceAdaptor, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processValueSet(XMLDaoServiceAdaptor, Object, Object, Mappings, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processValueSetDefinition(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processValueSetDefinitionRevision(XMLDaoServiceAdaptor, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processValueSetDefinitionSystemReleaseRevision(XMLDaoServiceAdaptor, Object, Object, Mappings) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
processValueSetMappings(XMLDaoServiceAdaptor, Object, Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
profileAssociations(LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
 
profileConcepts(LexBIGService, String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
 
profileHierarchy(LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, String, ResolvedConceptReference, int) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
Recursive traversal method gauges maximum depth, average depth
ProfileScheme - Class in org.LexGrid.LexBIG.example
Requires loading valid scheme (must have root node named @ pointing to top nodes) Profiles a coding scheme based on unique URN, version, relation and scheme name.
ProfileScheme() - Constructor for class org.LexGrid.LexBIG.example.ProfileScheme
Association type defaults to hasSubtype in this constructor
programName_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
programName_ - Variable in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
promptForCodeSystem() - Static method in class org.LexGrid.LexBIG.admin.Util
Display a list of available code systems and
promptForCodeSystem() - Static method in class org.lexgrid.valuesets.admin.Util
Display a list of available code systems and
properties - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Properties from Mapping Related ATN and ATV fields Listed here: MAPSETGRAMMER MAPSETRSAB MAPSETTYPE MAPSETVSAB MTH_MAPFROMEXHAUSTIVE MTH_MAPSETCOMPLEXITY MTH_MAPTOEXHAUSTIVE MTH_MAPFROMCOMPLEXITY MTH_MAPTOCOMPLEXITY MR DA ST Where MRSAT CUI is the same as MAPSETCUI
properties - Variable in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
Properties - Class in org.LexGrid.commonTypes
A collection of properties.
Properties() - Constructor for class org.LexGrid.commonTypes.Properties
 
properties - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
properties - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
PROPERTIES - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
PropertiesDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class PropertiesDescriptor.
PropertiesDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.PropertiesDescriptor
 
PropertiesFactory - Class in org.lexgrid.loader.properties.impl
A factory for creating Properties objects given a SQLConnection from LexEVS
PropertiesFactory() - Constructor for class org.lexgrid.loader.properties.impl.PropertiesFactory
 
propertiesLocationKey - Static variable in class org.lexevs.system.utility.PropertiesUtility
 
propertiesParentFolderKey - Static variable in class org.lexevs.system.utility.PropertiesUtility
 
PropertiesUtility - Class in org.lexevs.system.utility
Class to aid in finding and loading properties files.
PropertiesUtility() - Constructor for class org.lexevs.system.utility.PropertiesUtility
 
Property - Class in edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
Holder for Concept Properties loaded from Text files.
Property(String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
 
Property(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Property
Parse the line with format Property="prop_name" ConceptCode="concept_code" PropertyType="property/presentation/definition/comment.."
Property - Class in org.LexGrid.commonTypes
A description, definition, annotation or other attribute that serves to further define or identify an resource.
Property() - Constructor for class org.LexGrid.commonTypes.Property
 
PROPERTY - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
PROPERTY_ALTID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_COMMENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_COMMENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_COMMENT_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_COMMENT_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_CREATED_BY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_CREATION_DATE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_CUI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
PROPERTY_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
PROPERTY_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
PROPERTY_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
PROPERTY_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
PROPERTY_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_DEFINITION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_DEFINITION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_ID_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_ID_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_INSTRUCTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_INSTRUCTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_INSTRUCTION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_INSTRUCTION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_NAME_OID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
PROPERTY_NAME_OID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
PROPERTY_NAME_OID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
PROPERTY_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
PROPERTY_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
PROPERTY_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_PRINTNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
PROPERTY_PRINTNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
PROPERTY_PRINTNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
PROPERTY_SUBSET - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_SYNONYM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_TEXTPRESENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_TEXTPRESENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_TEXTPRESENTATION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROPERTY_TEXTPRESENTATION_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROPERTY_TYPE_GENERIC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGConstants
 
PROPERTY_TYPE_GENERIC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
PROPERTY_TYPE_GENERIC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The PROPERT y_ valu e_ field.
PROPERTY_XREF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PropertyBatchInsertItem - Class in org.lexevs.dao.database.access.property.batch
The Class PropertyBatchInsertItem.
PropertyBatchInsertItem() - Constructor for class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Instantiates a new property batch insert item.
PropertyBatchInsertItem(String, Property) - Constructor for class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Instantiates a new property batch insert item.
propertyClassToTypeMap - Static variable in class org.lexevs.dao.database.utility.DaoUtility
 
PropertyComparator - Class in edu.mayo.informatics.lexgrid.convert.directConversions.owlapi
Comparator used to sort concept properties by type and priority ...
PropertyComparator(PreferenceManager) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PropertyComparator
 
PropertyComparator - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
Comparator used to sort concept properties by type and priority ...
PropertyComparator(PreferenceManager) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PropertyComparator
 
propertyContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
PropertyContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Value Set Definition Property SWT Table.
PropertyContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyContentProvider
 
PropertyDao - Interface in org.lexevs.dao.database.access.property
The Interface PropertyDao.
PropertyDao.PropertyType - Enum in org.lexevs.dao.database.access.property
The Enum PropertyType.
PropertyDef - Class in org.lexgrid.lexevs.ndfrt.data
 
PropertyDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.PropertyDef
 
PropertyDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class PropertyDescriptor.
PropertyDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.PropertyDescriptor
 
PropertyEditDialog - Class in org.LexGrid.LexBIG.gui.edit
 
PropertyEditDialog(LB_GUI, String, boolean, String, Shell, DialogHandler, ResolvedConceptReference, Property) - Constructor for class org.LexGrid.LexBIG.gui.edit.PropertyEditDialog
 
propertyExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
PropertyIdResolver<T> - Interface in org.lexgrid.loader.processor.support
 
PropertyLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Property SWT table view.
PropertyLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
PropertyLink - Class in org.LexGrid.concepts
A link between two properties for an entity..
PropertyLink() - Constructor for class org.LexGrid.concepts.PropertyLink
 
propertyLink - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
PropertyLinkDescriptor - Class in org.LexGrid.concepts.descriptors
Class PropertyLinkDescriptor.
PropertyLinkDescriptor() - Constructor for class org.LexGrid.concepts.descriptors.PropertyLinkDescriptor
 
PropertyLinkResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface PropertyLinkResolver.
propertyList_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
propertyListToBatchInsertList(String, List<Property>) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
Property list to batch insert list.
PropertyMatchValue - Class in org.LexGrid.valueSets
Property matching value to be used to restrict entity property.
PropertyMatchValue() - Constructor for class org.LexGrid.valueSets.PropertyMatchValue
 
PropertyMatchValueDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PropertyMatchValueDescriptor.
PropertyMatchValueDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PropertyMatchValueDescriptor
 
PropertyMultiAttributeClassifier - Class in org.lexevs.dao.database.constants.classifier.property
 
PropertyMultiAttributeClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.property.PropertyMultiAttributeClassifier
 
propertyNames - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
propertyNames - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
propertyOrPropertyName - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
PropertyQualifier - Class in org.LexGrid.commonTypes
Additional information about the property and/or its association with the resource.
PropertyQualifier() - Constructor for class org.LexGrid.commonTypes.PropertyQualifier
 
propertyQualifier - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
PropertyQualifierContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Property Qualifier SWT Table.
PropertyQualifierContentProvider(LB_VSD_GUI, Property) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierContentProvider
 
PropertyQualifierDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class PropertyQualifierDescriptor.
PropertyQualifierDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.PropertyQualifierDescriptor
 
PropertyQualifierLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Property Qualifier SWT table view.
PropertyQualifierLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
PropertyQualifierMrrankUtility - Class in org.lexgrid.loader.rrf.data.property
 
PropertyQualifierMrrankUtility() - Constructor for class org.lexgrid.loader.rrf.data.property.PropertyQualifierMrrankUtility
 
PropertyQualifierResolver<I> - Interface in org.lexgrid.loader.processor.support
 
propertyQualifiersToQualifiers(PropertyQualifier[]) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Property qualifiers to qualifiers.
propertyQualifierValue - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
PropertyQualifierView - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
PropertyQualifierView(PropertyView, Shell, PropertyQualifier) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierView
 
PropertyReference - Class in org.LexGrid.valueSets
A reference to a propertyName or propertyValue and matchAlgoritm to use.
PropertyReference() - Constructor for class org.LexGrid.valueSets.PropertyReference
 
PropertyReferenceContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Property Reference Contents SWT Table.
PropertyReferenceContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceContentProvider
 
PropertyReferenceDescriptor - Class in org.LexGrid.valueSets.descriptors
Class PropertyReferenceDescriptor.
PropertyReferenceDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.PropertyReferenceDescriptor
 
PropertyReferenceLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Entry SWT table view.
PropertyReferenceLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
PropertyReferenceView - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
PropertyReferenceView(LB_VSD_GUI, ValueSetDefinitionDetails, Shell, ValueSetDefinition, DefinitionEntry) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceView
 
PropertyResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface PropertyResolver.
PropertyService - Interface in org.lexevs.dao.database.service.property
The Interface PropertyService.
propertyStringToTypeMap - Static variable in class org.lexevs.dao.database.utility.DaoUtility
 
PropertyType - Class in org.LexGrid.LexBIG.DataModel.enums
Options for filtering for pre-determined property types.
PropertyType() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.PropertyType
 
propertyTypeArrayToString(CodedNodeSet.PropertyType[]) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
PropertyTypeClassifier - Class in org.lexevs.dao.database.constants.classifier.property
The Class PropertyTypeClassifier.
PropertyTypeClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.property.PropertyTypeClassifier
 
PropertyTypeDescriptor - Class in org.LexGrid.LexBIG.DataModel.enums.descriptors
Class PropertyTypeDescriptor.
PropertyTypeDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.descriptors.PropertyTypeDescriptor
 
PropertyTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
An iBATIS type handler callback for Property types
PropertyTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.PropertyTypeHandler
 
PropertyTypes - Enum in org.LexGrid.commonTypes.types
A list of propertyTypes to be used where appropriate.
propertyTypes - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
propertyTypes_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
PropertyTypesDescriptor - Class in org.LexGrid.commonTypes.types.descriptors
Class PropertyTypesDescriptor.
PropertyTypesDescriptor() - Constructor for class org.LexGrid.commonTypes.types.descriptors.PropertyTypesDescriptor
 
propertyTypeToStringMap - Static variable in class org.lexevs.dao.database.utility.DaoUtility
 
PropertyUpdateEvent - Class in org.lexevs.dao.database.service.event.property
The Class PropertyUpdateEvent.
PropertyUpdateEvent(String, String, Entity, Property) - Constructor for class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Instantiates a new property update event.
PropertyUpdateEvent() - Constructor for class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Instantiates a new property update event.
PropertyView - Class in org.LexGrid.LexBIG.gui.valueSetsView
Class for displaying property details.
PropertyView(LB_VSD_GUI, ValueSetDefinitionDetails, Shell, ValueSetDefinition, Property) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
PROPNAME_ANNOTATIONPROPERTY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_ANNOTATIONPROPERTY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_ENUMERATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_ENUMERATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_INTERSECTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_INTERSECTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_PRIMITIVE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_PRIMITIVE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_RDF_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_RDF_ID - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_RDFS_LABEL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_RDFS_LABEL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_TYPE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROPNAME_UNION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
PROPNAME_UNION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
PROT_ANY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_ANY_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_BOOLEAN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_BOOLEAN_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_CLS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_CLS_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_FLOAT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_FLOAT_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_INSTANCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_INSTANCE_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_INTEGER - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_INTEGER_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROT_STRING_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_STRING_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
PROT_SYMBOL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROT_SYMBOL_URN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
PROTEGE_PREFIX - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
ProtegeFrames - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading Protégé Frames files.
ProtegeFrames(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
ProtegeFrames() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.ProtegeFrames
 
ProtegeOwl2LG - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
This is the main class containing the logic for the conversion from OWL to EMF..
ProtegeOwl2LG(URI, CodingSchemeManifest, LoaderPreferences, int, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Create a new instance for conversion.
ProtegeOwl2LGConstants - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
Constants used by the ProtegeOwl To EMF Implementation.
ProtegeOwl2LGConstants() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ProtegeOwl2LGMain - Class in edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl
This is a generic OWL Loader for OWL to EMF transformation.
ProtegeOwl2LGMain(URI, CodingSchemeManifest, LoaderPreferences, boolean, int, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGMain
 
protoNext(int, int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
protoNext(int) - Method in class org.lexevs.paging.AbstractPageableIterator
 
provider_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
provider_ - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
provider_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
provider_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
providerSource - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
ProxyProtectedScoreDocWrapper - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
ProxyProtectedScoreDocWrapper() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ProxyProtectedScoreDocWrapper
 
ProxyWrappedJdbcLexEvsTreeDao - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.dao
 
ProxyWrappedJdbcLexEvsTreeDao() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.ProxyWrappedJdbcLexEvsTreeDao
 
pruneVersionList(AbsoluteCodingSchemeVersionReferenceList) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Go over the supplied coding scheme version reference list and remove any entries that aren't supported by the service.
PTR_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
PUBLIC_PASSWORD - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
PUBLIC_USERNAME - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
PUBLISH_DESIGNATION - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
publishName(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
publishValue(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
put(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheEhcacheImpl
 
put(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.impl.AssociationEntityCacheInMemoryImpl
 
put(AssociationEntity) - Method in interface edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.interfaces.AssociationEntityCache
 
put(K, V) - Method in interface org.lexevs.cache.CacheRegistry.CacheWrapper
 
put(K, V) - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 

Q

qTest() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest.Test
 
qualiferTableRequired_ - Variable in class org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model.GraphQuestionQuery
The qualifer table required_.
qualiferTableRequired_ - Variable in class org.LexGrid.LexBIG.Impl.helpers.GraphQuestionQuery
 
Qualifier(String, String) - Constructor for class org.lexevs.dao.index.indexer.LuceneLoaderCode.Qualifier
Instantiates a new qualifier.
QUALIFIER - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
QUALIFIER_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
QUALIFIER_NAME_VALUE_SPLIT_TOKEN - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant QUALIFIER_NAME_VALUE_SPLIT_TOKEN.
QualifierDef - Class in org.lexgrid.lexevs.ndfrt.data
 
QualifierDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.QualifierDef
 
QualifierHolder(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL.QualifierHolder
 
qualifierList_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
qualifierName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
QualifierNameValuePair(String, String) - Constructor for class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
Instantiates a new qualifier name value pair.
QualifierResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface QualifierResolver.
qualifiers - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
QUALIFIERS - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
QualifierSort(ColumnSortType, CodedNodeGraphService.Order, String, String) - Constructor for class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.QualifierSort
Instantiates a new qualifier sort.
QualifierSortOption(MappingExtension.Direction, String) - Constructor for class org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.QualifierSortOption
Instantiates a new qualifier sort option.
qualifierValue - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
qualifyConceptPresentation(String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Add context qualifiers to text presentations for matching concepts (Overrides UMLSBAaseCode method).
qualifyConceptPresentation(String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Add context qualifiers to text presentations for matching concepts.
query(Query) - Method in interface org.lexevs.dao.index.access.entity.CommonEntityDao
 
query(String, String, Query) - Method in interface org.lexevs.dao.index.access.entity.EntityDao
 
query(Query) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
query(Query, Set<AbsoluteCodingSchemeVersionReference>) - Method in interface org.lexevs.dao.index.access.search.SearchDao
 
query(String, String, Query) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
query(List<AbsoluteCodingSchemeVersionReference>, BooleanQuery) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
query(Query) - Method in class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
query(Query) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
query(Query, Set<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
 
query(Query) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
query(Query, Set<AbsoluteCodingSchemeVersionReference>) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
query(String, String, Query) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
query(String, String, Query) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
query(Set<AbsoluteCodingSchemeVersionReference>, Query) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
query(Set<AbsoluteCodingSchemeVersionReference>, Query) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
query(Set<AbsoluteCodingSchemeVersionReference>, Query) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
QueryBuilder() - Constructor for class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl.QueryBuilder
 
queryClauses - Variable in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
queryCommonIndex(List<AbsoluteCodingSchemeVersionReference>, Query) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
 
queryCommonIndex(List<AbsoluteCodingSchemeVersionReference>, Query) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
QueryGenerator - Class in org.lexevs.dao.indexer.api.generators
This class will generate a query for you to use in searching.
QueryGenerator() - Constructor for class org.lexevs.dao.indexer.api.generators.QueryGenerator
 
queryOnValueSetMembershipAndText() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
queryOnValueSetMembershipAndTextForOneValueSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
queryPreferredPropertyTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
queryPropertyFromTwoValueSetsTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
queryPropertyTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
queryPublishPropertyTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 

R

RandomGuidIndividualIdSetter<I> - Class in org.lexgrid.loader.data.property
The Class RandomGuidIndividualIdSetter.
RandomGuidIndividualIdSetter() - Constructor for class org.lexgrid.loader.data.property.RandomGuidIndividualIdSetter
 
RandomGuidKeyIncrementer - Class in org.lexevs.dao.database.key.incrementer
The Class RandomGuidKeyIncrementer.
RandomGuidKeyIncrementer() - Constructor for class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
range - Variable in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
range - Variable in class org.lexgrid.lexevs.ndfrt.data.PropertyDef
 
range - Variable in class org.lexgrid.lexevs.ndfrt.data.RoleDef
 
RANGE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
rangeStyle - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
RDF_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
RDF_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
RDFS_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
RDFS_NAMESPACE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
RDFXML - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
RDFXML_ABBREV - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
read() - Method in class org.lexgrid.loader.meta.reader.MetaCodingSchemeReader
 
read() - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
 
read() - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
read() - Method in class org.lexgrid.loader.reader.decorator.SingleItemToListReaderDecorator
 
read() - Method in class org.lexgrid.loader.reader.ListReader
 
read() - Method in class org.lexgrid.loader.reader.SkippingItemReader
 
readAbbreviationsFile(OBOAbbreviations, String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
readAllCodingSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
readAndMergeContents(OBOContents, OBOHeader) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
readAndVerifyConcepts(URI, LgMessageDirectorIF, String, boolean) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.TextUtility
 
readClaMLXML(URI, ClaMLConfig) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLXMLReader
 
readCodingScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
readCodingScheme(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
readCodingSchemeAliasesFromServer() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Read coding scheme aliases from server.
readHeader() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
readHistories() - Method in class org.lexevs.system.ResourceManager
Deprecated.
Read histories.
ReadImpl - Class in edu.mayo.informatics.lexgrid.convert.Conversions
 
ReadImpl() - Constructor for class edu.mayo.informatics.lexgrid.convert.Conversions.ReadImpl
 
readMedDRAFiles() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAMapToLexGrid
 
readRRFLine() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.RRFLineReader
 
readTerminologiesFromServer(SQLConnectionInfo) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Read terminologies from server.
rebind(String, Object) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
rebind(String, Object, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
rebind(Name, Object) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
rebind(Name, Object, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
rebuild(AbsoluteCodingSchemeVersionReference, Index, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Index.IndexLoader
Force (re)build of index entries for the designated coding scheme.
RebuildIndex - Class in org.LexGrid.LexBIG.admin
Rebuilds indexes associated with the specified coding scheme.
RebuildIndex() - Constructor for class org.LexGrid.LexBIG.admin.RebuildIndex
 
rebuildRootNodes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.MetaThesaurusToSQL
Remove and rebuild navigable relations from special endpoint nodes '@' and '@@' to first level nodes in hierarchical associations.
rebuildSingleNamedExtension(AbsoluteCodingSchemeVersionReference, boolean) - Method in class org.LexGrid.LexBIG.admin.RebuildIndex
Rebuild a single named index extension for the specified scheme.
RebuildTransitivityTable - Class in org.LexGrid.LexBIG.admin
Rebuilds the Transitivity Table associated with the specified coding scheme.
RebuildTransitivityTable() - Constructor for class org.LexGrid.LexBIG.admin.RebuildTransitivityTable
 
rebuildTransitivityTable(AbsoluteCodingSchemeVersionReference, boolean) - Method in class org.LexGrid.LexBIG.admin.RebuildTransitivityTable
Rebuild a single named index extension for the specified scheme.
recalcRootNodes(URI, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCI_MetaThesaurusLoader
Rebuild relationships between the system-designated top ('@') and end ('@@') nodes and those concepts linked to root hierarchical terms defined by the UMLS.
reComputeTransitiveTable(String, String) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
reComputeTransitiveTable(String, String) - Method in interface org.lexevs.dao.database.operation.LexEvsDatabaseOperations
 
reComputeTransitivityTable(String, String) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
reComputeTransitivityTable(String, String) - Method in interface org.lexevs.dao.database.operation.transitivity.TransitivityBuilder
 
reconnect() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
recordToString(DatabaseRecord, int[], int[]) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_Utils
 
recurseFromRootsToUpdateMap(LexEVSTreeItem) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
red - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
reduceFromURITest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
reduceToCodeFromUri(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
reduceToSource(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
reduceToSourceTest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
REF - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
REFERENCE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
ReferenceLink - Class in org.LexGrid.LexBIG.DataModel.Core
Any reference to another document element.
ReferenceLink() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
 
ReferenceLink(String) - Constructor for class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
 
ReferenceLinkDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class ReferenceLinkDescriptor.
ReferenceLinkDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.ReferenceLinkDescriptor
 
ReferenceReturningCycleDetectingCallback - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
The Class ReferenceReturningCycleDetectingCallback.
ReferenceReturningCycleDetectingCallback() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.ReferenceReturningCycleDetectingCallback
 
RefershingPager() - Constructor for class org.lexevs.paging.AbstractRefereshingPageableIterator.RefershingPager
Instantiates a new refershing pager.
ReflectionValidationProcessor<T> - Class in edu.mayo.informatics.lexgrid.convert.validator.processor
The Class ReflectionValidationProcessor.
ReflectionValidationProcessor() - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.processor.ReflectionValidationProcessor
 
refresh() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
refresh() - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
refresh() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
refresh() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
refresh() - Method in interface org.lexevs.system.service.SystemResourceService
 
refreshAvailableIndexes() - Method in class org.lexevs.dao.indexer.api.IndexerService
 
refreshCodingSchemeList() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
refreshDefinitionEntryList() - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
refreshIterator() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
refreshNumberRemaining(int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
refreshNumberRemaining(int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
refreshPickListList() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
refreshPropertyComboBox(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.edit.EntityEditDialog
 
refreshPropertyQualList() - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
refreshRemaining(int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
RefreshResult() - Constructor for class org.lexevs.paging.AbstractRefereshingPageableIterator.RefreshResult
 
refreshValueSetDefList() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
refreshValueSetDefListTemp() - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
refreshVSDPropertyList() - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
RegExpSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class RegExpSearch.
RegExpSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.RegExpSearch
 
register() - Static method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
register() - Static method in class org.LexGrid.LexBIG.Impl.exporters.OBOExport
 
register() - Static method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
register() - Method in class org.LexGrid.LexBIG.Impl.Extensions.AbstractExtendable
 
register() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
register() - Static method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
register() - Static method in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
register(URNVersionPair[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
register() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
register() - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Register.
register(boolean, String, String) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
registerCodingSchemeAsSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
registerCodingSchemeAsSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Register a coding scheme as a supplement to a specified coding scheme.
registerCodingSchemeEntityIndex(String, String) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
registerCodingSchemeEntityIndex(String, String) - Method in interface org.lexevs.dao.index.operation.LexEvsIndexOperations
Register coding scheme in the index.
registerCodingSchemeIndex(String, String, String) - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
registerCodingSchemeIndex(String, String, String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
registerCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
registerCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
registerCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
registerCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.system.service.SystemResourceService
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSort
Register comparators.
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodePostSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSystemSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.ConceptStatusSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionPostSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.isActiveSort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
registerComparators(Map<Class, Comparator>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.NumberOfChildrenSort
 
registerDaos(DaoManager) - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
 
registerDaos(DaoManager) - Method in interface org.lexevs.dao.database.scheme.PersistenceScheme
Register daos.
registerDefaultCommands() - Method in class org.LexGrid.LexBIG.gui.displayResults.Display
 
REGISTERED_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
REGISTERED_PREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
registeredNameOrCSURI - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
registerExportExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to export existing content from the LexGrid repository.
registerExportExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerFilterExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to filter query content.
registerFilterExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerGenericExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to implement application-specific behavior that is centrally accessible from a LexBIGService.
registerGenericExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerIndexExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to index information that has been previously loaded to a LexBIGService.
registerIndexExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
RegisteringTasklet - Class in org.lexgrid.loader.lexbigadmin
The Class RegisteringTasklet.
RegisteringTasklet() - Constructor for class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
RegisterLexGridTerminology - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for registering a terminology with the LexGrid Services Index.
RegisterLexGridTerminology(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
RegisterLexGridTerminology() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
registerListener(String, DatabaseServiceEventListener) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
registerListener(DatabaseServiceEventListener) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
registerListener(DatabaseServiceEventListener) - Method in interface org.lexevs.dao.database.service.event.registry.ListenerRegistry
Register listener.
registerListener(String, DatabaseServiceEventListener) - Method in interface org.lexevs.dao.database.service.event.registry.ListenerRegistry
Register listener.
registerLoadExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to load information for access by a LexBIGService.
registerLoadExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerSearchExtension(ExtensionDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
 
registerSearchExtension(ExtensionDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerSortExtension(SortDescription) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Registers a class of extension used to provide additional sorting of query results.
registerSortExtension(SortDescription) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
registerSupportedAssociation(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedAssociation(String, String, String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
registerSupportedAssociationQualifier(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedAttributes(SupportedAttributeTemplate, O) - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Register supported attributes.
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<AssociationQualification>) - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, List<ParentIdHolder<AssociationQualification>>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<AssociationQualification>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<Property>) - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<PropertyQualifier>) - Method in class org.lexgrid.loader.processor.EntityPropertyQualifierProcessor
 
registerSupportedAttributes(SupportedAttributeTemplate, ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
registerSupportedCodingScheme(String, String, String, boolean, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedContainerName(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedContext(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedDataType(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedDegreeOfFidelity(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedEntityType(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedHierarchy(String, String, String, String, List<String>, boolean, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedLanguage(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedNamespace(String, String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedProperty(String, String, String, PropertyTypes, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedPropertyLink(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedPropertyQualifier(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedPropertyQualifierType(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedPropertyType(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedRepresentationalForm(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedSortOrder(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedSource(String, String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedSourceRole(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
registerSupportedStatus(String, String, String, boolean) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
Registers a new mapping, keyed by case-insensitive local id.
Registry - Class in org.lexevs.registry.model
The Class Registry.
Registry() - Constructor for class org.lexevs.registry.model.Registry
 
Registry - Interface in org.lexevs.registry.service
The Interface Registry.
Registry.KnownTags - Enum in org.lexevs.registry.service
The Enum KnownTags.
Registry.ResourceType - Enum in org.lexevs.registry.service
The Enum ResourceType.
RegistryConstants - Class in org.lexevs.registry.constant
The Class RegistryConstants.
RegistryConstants() - Constructor for class org.lexevs.registry.constant.RegistryConstants
 
RegistryDao - Interface in org.lexevs.dao.database.access.registry
The Interface RegistryDao.
RegistryEntry - Class in org.lexevs.registry.model
The Class RegistryEntry.
RegistryEntry() - Constructor for class org.lexevs.registry.model.RegistryEntry
 
RegistryEventSupport - Class in org.lexevs.registry.event
The Class RegistryEventSupport.
RegistryEventSupport() - Constructor for class org.lexevs.registry.event.RegistryEventSupport
 
RegistryListener - Interface in org.lexevs.registry.event
The listener interface for receiving registry events.
RegistryTest - Class in org.LexGrid.LexBIG.Impl.dataAccess
JUnit test cases for the registry system.
RegistryTest() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.RegistryTest
 
RegistryUtility - Class in org.lexevs.registry.utility
The Class RegistryUtility.
RegistryUtility() - Constructor for class org.lexevs.registry.utility.RegistryUtility
 
registryWasRevised() - Method in class org.lexevs.registry.WriteLockManager
Registry was revised.
RegistryXmlToDatabaseTransfer - Class in org.lexevs.registry.xmltransfer
The Class RegistryXmlToDatabaseTransfer.
RegistryXmlToDatabaseTransfer() - Constructor for class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
 
REGULAR_CODING_SCHEME - Static variable in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
ReIndexerLoader - Class in org.LexGrid.LexBIG.gui.load
 
ReIndexerLoader(LB_GUI, AbsoluteCodingSchemeVersionReference) - Constructor for class org.LexGrid.LexBIG.gui.load.ReIndexerLoader
 
reInit(Properties) - Static method in class org.lexevs.system.ResourceManager
Deprecated.
This method is used by the lock manager thread, if another thread changed something.
rel - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
REL_DISJOINTFROM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_HIER_RELATIONS - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The RE l_ hie r_ relations.
REL_INSTANCEOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_INTERSECTIONOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_INVERSEOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_ISA - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_REPLACEDBY - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
REL_UNIONOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
rela - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
RELA_HIER_RELATIONS - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The REL a_ hie r_ relations.
RELA_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
RelaAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
RelaAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.RelaAssocQualResolver
 
relateAssociationSourceData(AssociationWrapper, AssociationSource, AssociationData) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
relateAssociationSourceData(AssociationWrapper, AssociationSource, AssociationData) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
relateAssociationSourceTarget(AssociationWrapper, AssociationSource, AssociationTarget) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
relateAssociationSourceTarget(AssociationWrapper, AssociationSource, AssociationTarget) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
relateAssocSourceWithAnnotationIRITarget(EntityTypes, AssociationWrapper, AssociationSource, OWLAnnotation, OWLAxiom, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
relateAssocSourceWithAnnotationTarget(EntityTypes, AssociationWrapper, AssociationSource, OWLAnnotation, OWLAxiom, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
relateAssocSourceWithIriTarget(EntityTypes, AssociationWrapper, AssociationSource, IRI, OWLAxiom) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
relateAssocSourceWithOWLClassExpressionTarget(EntityTypes, AssociationWrapper, AssociationSource, OWLClassExpression, OWLAxiom) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
The OWLClassExpression is used to compute the target.
relateAssocSourceWithOWLClassTarget(EntityTypes, AssociationWrapper, AssociationSource, OWLClass, OWLAxiom) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
The OWLClass is used to compute the target.
relateAssocSourceWithRDFResourceTarget(EntityTypes, AssociationWrapper, AssociationSource, OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
The RDFResource is used to compute the target.
relateAssocSourceWithRDFResourceTarget(EntityTypes, AssociationWrapper, AssociationSource, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
The RDFResource is used to compute the target.
RELATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
RELATION_CTX - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
RELATION_EXPANDED_FORM - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The RELATIO n_ expande d_ form.
RELATION_INVERSE - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The RELATIO n_ inverse.
RELATION_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
relationContainerNames_ - Variable in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RelationContainerResolver<I> - Interface in org.lexgrid.loader.processor.support
The Interface RelationContainerResolver.
RelationHolder - Class in org.lexgrid.loader.wrappers
The Class RelationHolder.
RelationHolder() - Constructor for class org.lexgrid.loader.wrappers.RelationHolder
 
relationName - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
RelationResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface RelationResolver.
RELATIONS - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
Relations - Class in org.LexGrid.relations
A collection of relations that represent a particular point of view or community.
Relations() - Constructor for class org.LexGrid.relations.Relations
 
RelationsDescriptor - Class in org.LexGrid.relations.descriptors
Class RelationsDescriptor.
RelationsDescriptor() - Constructor for class org.LexGrid.relations.descriptors.RelationsDescriptor
 
RelationService - Interface in org.lexevs.dao.database.service.relation
The Interface RelationService.
RelationshipRestriction() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
RelationshipRestriction(CodedNodeSet, LocalNameList) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
RelationsUtil - Class in org.LexGrid.custom.relations
 
RelationsUtil() - Constructor for class org.LexGrid.custom.relations.RelationsUtil
 
RELATIVE_ORDER - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
RELATIVE_URIS - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
release() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Releases the maintained terms and invalidates the iterator.
release() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
release() - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
release() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
release() - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
release() - Method in interface org.LexGrid.LexBIG.Utility.Iterators.EntityListIterator
Release the iterator.
release() - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
releaseLock(String, String) - Method in class org.lexevs.registry.WriteLockManager
Unlock a particular coding scheme (finished loading, indexing, etc).
releaseLockFile() - Method in class org.lexevs.registry.WriteLockManager
Release lock file.
releaseSavepoint(Savepoint) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
releaseURNOrreleaseURI - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
RemainingRefresher() - Constructor for class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator.RemainingRefresher
Instantiates a new pager.
REMARK - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
RemoteApiSafeTest - Annotation Type in org.LexGrid.LexBIG.Utility
 
remove(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.OptionHolder
 
remove() - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
remove(CodingSchemeMetaData) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
remove() - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
remove() - Method in class org.lexevs.paging.AbstractPageableIterator
 
remove(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Removes the.
remove() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
 
remove() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
 
remove(CodeToReturn) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Removes the.
remove(CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
remove() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorAdapter
 
remove(AbsoluteCodingSchemeVersionReference, boolean) - Method in class org.lexgrid.valuesets.admin.RemoveAllResolvedValueSets
 
remove(AbsoluteCodingSchemeVersionReferenceList, boolean) - Method in class org.lexgrid.valuesets.admin.RemoveVSResolvedFromCodingSchemes
 
REMOVE_ASSOCIATIONDATA_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationDataService
The Constant REMOVE_ASSOCIATIONDATA_ERROR.
REMOVE_ASSOCIATIONTARGET_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationTargetService
The Constant REMOVE_ASSOCIATIONTARGET_ERROR.
REMOVE_CODINGSCHEME_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant REMOVE_CODINGSCHEME_ERROR.
REMOVE_CODINGSCHEME_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant REMOVE_CODINGSCHEME_PROPERTY_ERROR.
REMOVE_DEFINITION_ENTRY_BY_VALUESET_DEFINITION_GUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
REMOVE_ENTITY_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant REMOVE_ENTITY_ERROR.
REMOVE_ENTITY_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant REMOVE_ENTITY_PROPERTY_ERROR.
REMOVE_PICKLIST_DEFINITION_BY_PICKLISTID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
REMOVE_PICKLIST_ENTRY_BY_PICKLISTGUID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
REMOVE_RELATION_ERROR - Static variable in interface org.lexevs.dao.database.service.relation.RelationService
The Constant REMOVE_RELATION_ERROR.
REMOVE_RELATION_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant REMOVE_RELATION_PROPERTY_ERROR.
REMOVE_VALUESET_DEFINITION_BY_VALUESET_DEFINITION_URI_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
removeAbsoluteCodingSchemeVersionReference(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method removeAbsoluteCodingSchemeVersionReference.
removeAbsoluteCodingSchemeVersionReferenceAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
Method removeAbsoluteCodingSchemeVersionReferenceAt.
removeAllAbsoluteCodingSchemeVersionReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
removeAllAnyObject() - Method in class org.LexGrid.builtins.TsAnyType
 
removeAllAnyObject() - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
removeAllAssoc() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
removeAllAssociatedConcept() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
removeAllAssociatedConcept() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
removeAllAssociatedData() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
removeAllAssociation() - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
removeAllAssociationEntity() - Method in class org.LexGrid.concepts.Entities
 
removeAllAssociationNames() - Method in class org.LexGrid.naming.SupportedHierarchy
 
removeAllAssociationPredicate() - Method in class org.LexGrid.relations.Relations
 
removeAllAssociationQualification() - Method in class org.LexGrid.relations.AssociatableElement
 
removeAllChangedEntry() - Method in class org.LexGrid.versions.Revision
 
removeAllCodedNodeReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
removeAllCodingScheme() - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
removeAllCodingSchemeRendering() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
removeAllCodingSchemeSummary() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
removeAllComment() - Method in class org.LexGrid.concepts.Entity
 
removeAllConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
removeAllContext() - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
removeAllDefaultPickContext() - Method in class org.LexGrid.valueSets.PickListDefinition
 
removeAllDefinition() - Method in class org.LexGrid.concepts.Entity
 
removeAllDefinitionEntry() - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
removeAllEntity() - Method in class org.LexGrid.concepts.Entities
 
removeAllEntityType() - Method in class org.LexGrid.concepts.Entity
 
removeAllEntityType() - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
removeAllEntityVersions() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
removeAllEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
removeAllEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
removeAllEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
removeAllEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
removeAllEntry() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
removeAllEntry() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
removeAllExtensionDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
removeAllLocalName() - Method in class org.LexGrid.codingSchemes.CodingScheme
 
removeAllLocalName() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
removeAllMetadataProperty() - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
removeAllModuleDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
removeAllName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
removeAllName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
removeAllName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
removeAllName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
removeAllName() - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
removeAllNameAndValue() - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
removeAllPickContext() - Method in class org.LexGrid.valueSets.PickListEntry
 
removeAllPickListDefinition() - Method in class org.LexGrid.valueSets.PickListDefinitions
 
removeAllPickListEntryNode() - Method in class org.LexGrid.valueSets.PickListDefinition
 
removeAllPickListEntryNodeMultiAttributes(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
removeAllPickListEntryNodeMultiAttributes(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
removeAllPresentation() - Method in class org.LexGrid.concepts.Entity
 
removeAllProperty() - Method in class org.LexGrid.commonTypes.Properties
 
removeAllProperty() - Method in class org.LexGrid.concepts.Entity
 
removeAllPropertyLink() - Method in class org.LexGrid.concepts.Entity
 
removeAllPropertyQualifier() - Method in class org.LexGrid.commonTypes.Property
 
removeAllRelations() - Method in class org.LexGrid.codingSchemes.CodingScheme
 
removeAllRepresentsRealmOrContext() - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
removeAllResolvedConceptReference() - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
removeAllResolvedConceptReference() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
removeAllResolvedPickListEntry() - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
RemoveAllResolvedValueSets - Class in org.lexgrid.valuesets.admin
 
RemoveAllResolvedValueSets() - Constructor for class org.lexgrid.valuesets.admin.RemoveAllResolvedValueSets
 
removeAllRestrictToContext() - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
removeAllRevision() - Method in class org.LexGrid.versions.EditHistory
 
removeAllSortDescription() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
removeAllSource() - Method in class org.LexGrid.codingSchemes.CodingScheme
 
removeAllSource() - Method in class org.LexGrid.commonTypes.Property
 
removeAllSource() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
removeAllSource() - Method in class org.LexGrid.relations.AssociationPredicate
 
removeAllSource() - Method in class org.LexGrid.valueSets.PickListDefinition
 
removeAllSource() - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
removeAllSupportedAssociation() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedAssociationQualifier() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedCodingScheme() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedConceptDomain() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedContainerName() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedContext() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedDataType() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedDegreeOfFidelity() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedElement() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
removeAllSupportedEntityType() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedHierarchy() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedLanguage() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedNamespace() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedProperty() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedPropertyLink() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedPropertyQualifier() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedPropertyQualifierType() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedPropertyType() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedRepresentationalForm() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedSortOrder() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedSource() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedSourceRole() - Method in class org.LexGrid.naming.Mappings
 
removeAllSupportedStatus() - Method in class org.LexGrid.naming.Mappings
 
removeAllSystemRelease() - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
removeAllTag() - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
removeAllTarget() - Method in class org.LexGrid.relations.AssociationSource
 
removeAllTargetData() - Method in class org.LexGrid.relations.AssociationSource
 
removeAllUnusedDatabases() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeAllUnusedIndexes() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeAllUnusedMetaData() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeAllUnusedResources() - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeAllUsageContext() - Method in class org.LexGrid.commonTypes.Property
 
removeAllUsageContext() - Method in class org.LexGrid.relations.AssociatableElement
 
removeAllValueSetDefinition() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
RemoveAllValueSetDefinitions - Class in org.lexgrid.valuesets.admin
 
RemoveAllValueSetDefinitions() - Constructor for class org.lexgrid.valuesets.admin.RemoveAllValueSetDefinitions
 
removeAnyObject(Object) - Method in class org.LexGrid.builtins.TsAnyType
Method removeAnyObject.
removeAnyObject(Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method removeAnyObject.
removeAnyObjectAt(int) - Method in class org.LexGrid.builtins.TsAnyType
Method removeAnyObjectAt.
removeAnyObjectAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Method removeAnyObjectAt.
removeAssoc(AssociationEntity) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method removeAssoc.
removeAssocAt(int) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method removeAssocAt.
removeAssociatedConcept(AssociatedConcept) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method removeAssociatedConcept.
removeAssociatedConcept(AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
removeAssociatedConceptAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
Method removeAssociatedConceptAt.
removeAssociatedConceptAt(int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
removeAssociatedData(AssociatedData) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method removeAssociatedData.
removeAssociatedDataAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
Method removeAssociatedDataAt.
removeAssociation(Association) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method removeAssociation.
removeAssociationAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
Method removeAssociationAt.
removeAssociationData(String, String, AssociationData) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Removes the association data.
removeAssociationData(String, String, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
removeAssociationEntity(AssociationEntity) - Method in class org.LexGrid.concepts.Entities
Method removeAssociationEntity.
removeAssociationEntityAt(int) - Method in class org.LexGrid.concepts.Entities
Method removeAssociationEntityAt.
removeAssociationNames(String) - Method in class org.LexGrid.naming.SupportedHierarchy
Method removeAssociationNames.
removeAssociationNamesAt(int) - Method in class org.LexGrid.naming.SupportedHierarchy
Method removeAssociationNamesAt.
removeAssociationPredicate(AssociationPredicate) - Method in class org.LexGrid.relations.Relations
Method removeAssociationPredicate.
removeAssociationPredicateAt(int) - Method in class org.LexGrid.relations.Relations
Method removeAssociationPredicateAt.
removeAssociationQualification(AssociationQualification) - Method in class org.LexGrid.relations.AssociatableElement
Method removeAssociationQualification.
removeAssociationQualificationAt(int) - Method in class org.LexGrid.relations.AssociatableElement
Method removeAssociationQualificationAt.
removeAssociationTarget(String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Removes the association target.
removeAssociationTarget(String, String, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
removeBrokenScheme() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
removeChangedEntry(ChangedEntry) - Method in class org.LexGrid.versions.Revision
Method removeChangedEntry.
removeChangedEntryAt(int) - Method in class org.LexGrid.versions.Revision
Method removeChangedEntryAt.
removeChild(GNode) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
removeCodedNodeReference(CodedNodeReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method removeCodedNodeReference.
removeCodedNodeReferenceAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
Method removeCodedNodeReferenceAt.
removeCodeSystem(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Removes the code system.
removeCodingScheme(String, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Destroy coding scheme.
removeCodingScheme(CodingScheme) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Removes the coding scheme.
removeCodingScheme(String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
removeCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
removeCodingScheme(CodingScheme) - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method removeCodingScheme.
removeCodingSchemeAt(int) - Method in class org.LexGrid.codingSchemes.CodingSchemes
Method removeCodingSchemeAt.
removeCodingSchemeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
remove coding schme property.
removeCodingSchemeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
removeCodingSchemeRendering(CodingSchemeRendering) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method removeCodingSchemeRendering.
removeCodingSchemeRenderingAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
Method removeCodingSchemeRenderingAt.
removeCodingSchemeResourceFromSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
removeCodingSchemeResourceFromSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
removeCodingSchemeResourceFromSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
removeCodingSchemeResourceFromSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Removes the coding scheme resource from system.
removeCodingSchemeSummary(CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method removeCodingSchemeSummary.
removeCodingSchemeSummaryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
Method removeCodingSchemeSummaryAt.
removeCodingSchemeVersion(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
removeCodingSchemeVersion(AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Remove a pending or inactive coding scheme from the service.
removeCodingSchemeVersionMetaData(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
removeCodingSchemeVersionMetaData(AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Remove the metadata for a coding scheme from the service.
removeComment(Comment) - Method in class org.LexGrid.concepts.Entity
Method removeComment.
removeCommentAt(int) - Method in class org.LexGrid.concepts.Entity
Method removeCommentAt.
removeComments(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
removeComments(String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
removeConceptReference(ConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method removeConceptReference.
removeConceptReferenceAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
Method removeConceptReferenceAt.
removeContext(Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method removeContext.
removeContextAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Method removeContextAt.
removeDefaultPickContext(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removeDefaultPickContext.
removeDefaultPickContextAt(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removeDefaultPickContextAt.
removeDefinition(Definition) - Method in class org.LexGrid.concepts.Entity
Method removeDefinition.
removeDefinitionAt(int) - Method in class org.LexGrid.concepts.Entity
Method removeDefinitionAt.
removeDefinitionEntry(DefinitionEntry) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
removeDefinitionEntry(DefinitionEntry) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeDefinitionEntry.
removeDefinitionEntryAt(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeDefinitionEntryAt.
removeDocuments(Term) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
removeDocuments(Query) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
removeDocuments(Term) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
removeDocuments(Query) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
removeDocuments(Term) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
removeDocuments(Query) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
removeDocuments(Term) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
removeDocuments(Query) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
removeEntitiesContainer(Object) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
removeEntity(String, String, Entity) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Removes the entity.
removeEntity(String, String, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
removeEntity(Entity) - Method in class org.LexGrid.concepts.Entities
Method removeEntity.
removeEntityAt(int) - Method in class org.LexGrid.concepts.Entities
Method removeEntityAt.
removeEntityByUId(String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
removeEntityByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
removeEntityByUId(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
removeEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Remove LuceneIndexes for the given list of concept.
removeEntityLuceneIndexes(String, CodingSchemeVersionOrTag, List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Remove LuceneIndexes for the given list of concepts.
removeEntityProperty(String, String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Remove entity property.
removeEntityProperty(String, String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
removeEntityType(String) - Method in class org.LexGrid.concepts.Entity
Method removeEntityType.
removeEntityType(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method removeEntityType.
removeEntityTypeAt(int) - Method in class org.LexGrid.concepts.Entity
Method removeEntityTypeAt.
removeEntityTypeAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Method removeEntityTypeAt.
removeEntityVersions(EntityVersion) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method removeEntityVersions.
removeEntityVersionsAt(int) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
Method removeEntityVersionsAt.
removeEntry(RegistryEntry) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
removeEntry(RegistryEntry) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
removeEntry(RegistryEntry) - Method in interface org.lexevs.registry.service.Registry
Removes the entry.
removeEntry(RegistryEntry) - Method in class org.lexevs.registry.service.XmlRegistry
 
removeEntry(CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method removeEntry.
removeEntry(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method removeEntry.
removeEntry(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method removeEntry.
removeEntry(NCIChangeEvent) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method removeEntry.
removeEntry(SortOption) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method removeEntry.
removeEntry(CodingSchemeManifest) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method removeEntry.
removeEntryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
Method removeEntryAt.
removeEntryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
Method removeEntryAt.
removeEntryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
Method removeEntryAt.
removeEntryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
Method removeEntryAt.
removeEntryAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
Method removeEntryAt.
removeEntryAt(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method removeEntryAt.
removeEscapes(String) - Static method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
removeExtensionDescription(ExtensionDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method removeExtensionDescription.
removeExtensionDescriptionAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
Method removeExtensionDescriptionAt.
removeExtraWhiteSpaceCharacters(String, Set) - Static method in class org.lexevs.dao.indexer.api.generators.QueryGenerator
 
RemoveFromDistributedTests - Interface in org.LexGrid.LexBIG.Utility
 
removeFromEnvironment(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
removeHistoryEntry(String) - Method in class org.lexevs.registry.service.XmlRegistry
Removes the history entry.
removeHistoryService(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Removes the history service.
removeHistoryService(String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
removeHistoryService(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Remove pending or inactive coding scheme history information.
RemoveInactiveRunner() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator.RemoveInactiveRunner
 
removeInactives(Set<CodeToReturn>, CodedNodeSet.ActiveOption) - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator.RemoveInactiveRunner
 
RemoveIndex - Class in org.LexGrid.LexBIG.admin
Clears an optional named index associated with the specified coding scheme.
RemoveIndex() - Constructor for class org.LexGrid.LexBIG.admin.RemoveIndex
 
removeIndexMetaDataValue(String) - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaData
 
removeInvalidXMLCharacters(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
removeInvalidXMLCharacters(String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
removeLinkFrom(GNode, GAssociation) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
removeLinkTo(GNode, GAssociation) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
removeListener(ILabelProviderListener) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
removeLoad(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
Removes the load.
removeLoad(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
 
removeLoad(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
Removes the load.
removeLoad(String, String) - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
removeLoad(String, String) - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
removeLoad(String, String) - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
removeLocalName(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeLocalName.
removeLocalName(CsmfLocalName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method removeLocalName.
removeLocalNameAt(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeLocalNameAt.
removeLocalNameAt(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method removeLocalNameAt.
removeMedaDataValueUsingKey() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
removeMetadata(String, String) - Method in interface org.lexevs.dao.index.access.metadata.MetadataDao
 
removeMetadata(String, String) - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
removeMetadata(String, String) - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
removeMetadata(String, String) - Method in interface org.lexevs.dao.index.service.metadata.MetadataIndexService
 
RemoveMetadata - Class in org.LexGrid.LexBIG.admin
Clears optionally loaded metadata associated with the specified coding scheme.
RemoveMetadata() - Constructor for class org.LexGrid.LexBIG.admin.RemoveMetadata
 
removeMetadataEntry(String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeMetadataProperty(MetadataProperty) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method removeMetadataProperty.
removeMetadataPropertyAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
Method removeMetadataPropertyAt.
removeModuleDescription(ModuleDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method removeModuleDescription.
removeModuleDescriptionAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
Method removeModuleDescriptionAt.
removeName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method removeName.
removeName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method removeName.
removeName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method removeName.
removeName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method removeName.
removeName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method removeName.
removeNameAndValue(NameAndValue) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method removeNameAndValue.
removeNameAndValueAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
Method removeNameAndValueAt.
removeNameAt(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
Method removeNameAt.
removeNameAt(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
Method removeNameAt.
removeNameAt(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
Method removeNameAt.
removeNameAt(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
Method removeNameAt.
removeNameAt(int) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
Method removeNameAt.
removeNciHistory(String) - Method in interface org.lexevs.dao.database.access.ncihistory.NciHistoryDao
 
removeNciHistory(String) - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDao
 
removeNciHistory(String) - Method in interface org.lexevs.dao.database.service.ncihistory.NciHistoryService
Removes the nci history.
removeNciHistory(String) - Method in class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
removeNciHistoryResourceToSystemFromSystem(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
removeNciHistoryResourceToSystemFromSystem(String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
removeNciHistoryResourceToSystemFromSystem(String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
removeNciHistoryResourceToSystemFromSystem(String) - Method in interface org.lexevs.system.service.SystemResourceService
 
removeNode(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Removes the node identified by the given key from those tracked by the graph.
removeNonCodingSchemeResourceFromSystem(String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
removeNonCodingSchemeResourceFromSystem(String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
removeOpenLoggers() - Method in class org.LexGrid.LexBIG.gui.logging.LogViewer
 
removeOuterMostQuotes(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
removePickContext(String) - Method in class org.LexGrid.valueSets.PickListEntry
Method removePickContext.
removePickContextAt(int) - Method in class org.LexGrid.valueSets.PickListEntry
Method removePickContextAt.
removePickList(String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
removePickList(String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Removes pick list definition from the system that matches supplied pickListId.
removePickListDefinition(PickListDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Removes the pick list definition.
removePickListDefinition(PickListDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
removePickListDefinition(PickListDefinition) - Method in class org.LexGrid.valueSets.PickListDefinitions
Method removePickListDefinition.
removePickListDefinitionAt(int) - Method in class org.LexGrid.valueSets.PickListDefinitions
Method removePickListDefinitionAt.
removePickListDefinitionByPickListId(String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
Delete pick list definition by pick list id.
removePickListDefinitionByPickListId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
removePickListDefinitionByPickListId(String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Removes the pick list definition by pick list id.
removePickListDefinitionByPickListId(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
removePickListDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
removePickListDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Removes the pick list definition property.
removePickListDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
removePickListDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
removePickListDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
removePickListDefinitionResourceFromSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Removes the pick list definition resource from system.
removePickListEntryNode(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Removes the pick list entry node.
removePickListEntryNode(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
removePickListEntryNode(PickListEntryNode) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removePickListEntryNode.
removePickListEntryNodeAt(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removePickListEntryNodeAt.
removePickListEntryNodeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
removePickListEntryNodeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Removes the pick list entry node property.
removePresentation(Presentation) - Method in class org.LexGrid.concepts.Entity
Method removePresentation.
removePresentationAt(int) - Method in class org.LexGrid.concepts.Entity
Method removePresentationAt.
removeProperty(Property) - Method in class org.LexGrid.commonTypes.Properties
Method removeProperty.
removeProperty(Property) - Method in class org.LexGrid.concepts.Entity
Method removeProperty.
removePropertyAt(int) - Method in class org.LexGrid.commonTypes.Properties
Method removePropertyAt.
removePropertyAt(int) - Method in class org.LexGrid.concepts.Entity
Method removePropertyAt.
removePropertyByUId(String, String) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
removePropertyByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
removePropertyLink(PropertyLink) - Method in class org.LexGrid.concepts.Entity
Method removePropertyLink.
removePropertyLinkAt(int) - Method in class org.LexGrid.concepts.Entity
Method removePropertyLinkAt.
removePropertyQualifier(PropertyQualifier) - Method in class org.LexGrid.commonTypes.Property
Method removePropertyQualifier.
removePropertyQualifier(PropertyQualifier) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
removePropertyQualifierAt(int) - Method in class org.LexGrid.commonTypes.Property
Method removePropertyQualifierAt.
removeRCDScheme() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
 
removeRelation(String, String, Relations) - Method in interface org.lexevs.dao.database.service.relation.RelationService
Removes the relation.
removeRelation(String, String, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
removeRelationByUId(String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
removeRelationByUId(String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
removeRelationProperty(String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Remove relation property.
removeRelationProperty(String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
removeRelations(Relations) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeRelations.
removeRelationsAt(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeRelationsAt.
removeRepresentsRealmOrContext(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeRepresentsRealmOrContext.
removeRepresentsRealmOrContextAt(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeRepresentsRealmOrContextAt.
removeResolvedConceptReference(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method removeResolvedConceptReference.
removeResolvedConceptReference(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
removeResolvedConceptReferenceAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Method removeResolvedConceptReferenceAt.
removeResolvedConceptReferenceAt(int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
removeResolvedPickListEntry(ResolvedPickListEntry) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method removeResolvedPickListEntry.
removeResolvedPickListEntryAt(int) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
Method removeResolvedPickListEntryAt.
RemoveResolvedValueSet - Class in org.lexgrid.valuesets.admin
Remove the resolvedValueSet Example: java org.lexgrid.valuesets.admin.RemoveResolvedValueSet -l, <id> List of coding scheme versions to match when removing the ResolvedValueSet.
RemoveResolvedValueSet() - Constructor for class org.lexgrid.valuesets.admin.RemoveResolvedValueSet
 
removeRestrictToContext(SortContext) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method removeRestrictToContext.
removeRestrictToContextAt(int) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
Method removeRestrictToContextAt.
removeRevision(Revision) - Method in class org.LexGrid.versions.EditHistory
Method removeRevision.
removeRevisionAt(int) - Method in class org.LexGrid.versions.EditHistory
Method removeRevisionAt.
removeRevisionById(String) - Method in interface org.lexevs.dao.database.access.revision.RevisionDao
remove revision record from the revision table if not used by any entry.
removeRevisionById(String) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
removeRevisionRecordbyId(String) - Method in interface org.lexevs.dao.database.service.version.AuthoringService
removes revision record if not referenced by any existing entries.
removeRevisionRecordbyId(String) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
 
removeRootRelationNode(String, String, boolean) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Remove the root ('@') or tail ('@@') relationship node for the given coding scheme.
RemoveScheme - Class in org.LexGrid.LexBIG.admin
Removes a coding scheme based on unique URN and version.
RemoveScheme() - Constructor for class org.LexGrid.LexBIG.admin.RemoveScheme
 
removeSelectionListener(SelectionListener) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
removeSortDescription(SortDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method removeSortDescription.
removeSortDescriptionAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
Method removeSortDescriptionAt.
removeSource(Source) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeSource.
removeSource(Source) - Method in class org.LexGrid.commonTypes.Property
Method removeSource.
removeSource(CsmfSource) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method removeSource.
removeSource(AssociationSource) - Method in class org.LexGrid.relations.AssociationPredicate
Method removeSource.
removeSource(Source) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removeSource.
removeSource(Source) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeSource.
removeSourceAt(int) - Method in class org.LexGrid.codingSchemes.CodingScheme
Method removeSourceAt.
removeSourceAt(int) - Method in class org.LexGrid.commonTypes.Property
Method removeSourceAt.
removeSourceAt(int) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method removeSourceAt.
removeSourceAt(int) - Method in class org.LexGrid.relations.AssociationPredicate
Method removeSourceAt.
removeSourceAt(int) - Method in class org.LexGrid.valueSets.PickListDefinition
Method removeSourceAt.
removeSourceAt(int) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Method removeSourceAt.
removeSubFolders(File) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
removeSupportedAssociation(SupportedAssociation) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedAssociation.
removeSupportedAssociationAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedAssociationAt.
removeSupportedAssociationQualifier(SupportedAssociationQualifier) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedAssociationQualifier.
removeSupportedAssociationQualifierAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedAssociationQualifierAt.
removeSupportedCodingScheme(SupportedCodingScheme) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedCodingScheme.
removeSupportedCodingSchemeAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedCodingSchemeAt.
removeSupportedConceptDomain(SupportedConceptDomain) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedConceptDomain.
removeSupportedConceptDomainAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedConceptDomainAt.
removeSupportedContainerName(SupportedContainerName) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedContainerName.
removeSupportedContainerNameAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedContainerNameAt.
removeSupportedContext(SupportedContext) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedContext.
removeSupportedContextAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedContextAt.
removeSupportedDataType(SupportedDataType) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedDataType.
removeSupportedDataTypeAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedDataTypeAt.
removeSupportedDegreeOfFidelity(SupportedDegreeOfFidelity) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedDegreeOfFidelity.
removeSupportedDegreeOfFidelityAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedDegreeOfFidelityAt.
removeSupportedElement(SupportedElement) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method removeSupportedElement.
removeSupportedElementAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
Method removeSupportedElementAt.
removeSupportedEntityType(SupportedEntityType) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedEntityType.
removeSupportedEntityTypeAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedEntityTypeAt.
removeSupportedHierarchy(SupportedHierarchy) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedHierarchy.
removeSupportedHierarchyAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedHierarchyAt.
removeSupportedLanguage(SupportedLanguage) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedLanguage.
removeSupportedLanguageAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedLanguageAt.
removeSupportedNamespace(SupportedNamespace) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedNamespace.
removeSupportedNamespaceAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedNamespaceAt.
removeSupportedProperty(SupportedProperty) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedProperty.
removeSupportedPropertyAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyAt.
removeSupportedPropertyLink(SupportedPropertyLink) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyLink.
removeSupportedPropertyLinkAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyLinkAt.
removeSupportedPropertyQualifier(SupportedPropertyQualifier) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyQualifier.
removeSupportedPropertyQualifierAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyQualifierAt.
removeSupportedPropertyQualifierType(SupportedPropertyQualifierType) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyQualifierType.
removeSupportedPropertyQualifierTypeAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyQualifierTypeAt.
removeSupportedPropertyType(SupportedPropertyType) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyType.
removeSupportedPropertyTypeAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedPropertyTypeAt.
removeSupportedRepresentationalForm(SupportedRepresentationalForm) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedRepresentationalForm.
removeSupportedRepresentationalFormAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedRepresentationalFormAt.
removeSupportedSortOrder(SupportedSortOrder) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSortOrder.
removeSupportedSortOrderAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSortOrderAt.
removeSupportedSource(SupportedSource) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSource.
removeSupportedSourceAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSourceAt.
removeSupportedSourceRole(SupportedSourceRole) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSourceRole.
removeSupportedSourceRoleAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedSourceRoleAt.
removeSupportedStatus(SupportedStatus) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedStatus.
removeSupportedStatusAt(int) - Method in class org.LexGrid.naming.Mappings
Method removeSupportedStatusAt.
removeSystemRelease(SystemRelease) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method removeSystemRelease.
removeSystemReleaseAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
Method removeSystemReleaseAt.
removeTag(String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method removeTag.
removeTagAt(int) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
Method removeTagAt.
RemoveTagScheme - Class in org.LexGrid.LexBIG.admin
Removes a tag ID (e.g.
RemoveTagScheme() - Constructor for class org.LexGrid.LexBIG.admin.RemoveTagScheme
 
removeTarget(AssociationTarget) - Method in class org.LexGrid.relations.AssociationSource
Method removeTarget.
removeTargetAt(int) - Method in class org.LexGrid.relations.AssociationSource
Method removeTargetAt.
removeTargetData(AssociationData) - Method in class org.LexGrid.relations.AssociationSource
Method removeTargetData.
removeTargetDataAt(int) - Method in class org.LexGrid.relations.AssociationSource
Method removeTargetDataAt.
removeUnusedDatabase(String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeUnusedIndex(String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeUnusedMetaData(String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
removeUsageContext(String) - Method in class org.LexGrid.commonTypes.Property
Method removeUsageContext.
removeUsageContext(String) - Method in class org.LexGrid.relations.AssociatableElement
Method removeUsageContext.
removeUsageContextAt(int) - Method in class org.LexGrid.commonTypes.Property
Method removeUsageContextAt.
removeUsageContextAt(int) - Method in class org.LexGrid.relations.AssociatableElement
Method removeUsageContextAt.
removeValueSetDefinition(String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Delete value set definition by value set definition URI.
removeValueSetDefinition(String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
RemoveValueSetDefinition - Class in org.lexgrid.valuesets.admin
 
RemoveValueSetDefinition() - Constructor for class org.lexgrid.valuesets.admin.RemoveValueSetDefinition
 
removeValueSetDefinition(URI) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
removeValueSetDefinition(URI) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Removes supplied value set definition from the system.
removeValueSetDefinition(ValueSetDefinition) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method removeValueSetDefinition.
removeValueSetDefinitionAt(int) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Method removeValueSetDefinitionAt.
removeValueSetDefinitionByValueSetDefinitionURI(String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
Delete value set definition by value set definition URI.
removeValueSetDefinitionByValueSetDefinitionURI(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
removeValueSetDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
removeValueSetDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Removes the value set definition property.
removeValueSetDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
removeValueSetDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
removeValueSetDefinitionResourceFromSystem(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
removeValueSetDefinitionResourceFromSystem(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Removes the value set definition resource from system.
removeVSDefinitionEntry(String, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
removeVSDefinitionEntry(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Removes the vs definition entry.
removeVSDProperty(Property) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
RemoveVSResolvedFromCodingSchemes - Class in org.lexgrid.valuesets.admin
Remove resolved value set associated with the given coding scheme(s) Note: If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection.
RemoveVSResolvedFromCodingSchemes() - Constructor for class org.lexgrid.valuesets.admin.RemoveVSResolvedFromCodingSchemes
 
rename(Name, Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
rename(String, String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
render(OWLObject) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
RenderingDetail - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
The details of how a coding scheme is rendered in a given service.
RenderingDetail() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
 
RenderingDetailDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class RenderingDetailDescriptor.
RenderingDetailDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.RenderingDetailDescriptor
 
replacedBy - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
replaceStringsInString(StringBuffer, String, String) - Static method in class org.lexevs.dao.indexer.utility.Utility
 
representationalForm - Static variable in class org.lexgrid.exporter.owlrdf.LexRdf
 
representationForm - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
REPRESENTS_MAPPING_VERSION - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
REPRESENTS_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
REPRESENTS_VERSION - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
REPRESENTS_VERSION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
representsVersion - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
ReproducibleAssociationInstanceIdResolver - Class in org.lexgrid.loader.data.association
The Class EntityAssnsToEntityReproducibleKeyResolver.
ReproducibleAssociationInstanceIdResolver() - Constructor for class org.lexgrid.loader.data.association.ReproducibleAssociationInstanceIdResolver
 
REQUIRED_STRING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
requiresLayout() - Method in class org.lexevs.logging.SimpleEmailAppender
 
requiresLikeQueryTextToBeUpperCased() - Method in class org.LexGrid.util.sql.GenericSQLModifier
 
reset() - Method in interface org.lexevs.tree.dao.iterator.ChildTreeNodeIterator
Deprecated.
Reset.
reset() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
 
reset() - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.ChildTreeNodeIterator
Reset.
reset() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
 
reset() - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Reinitialize
resetNodePrintedFlags() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
For each node that is tracked, this class maintains an indication of whether or not the node has been included in the results in order to prevent recursion.
resolve(List<? extends LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.AllFatalResolverProcessor
 
resolve(List<? extends LoadValidationError>) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.DefaultResolverProcessor
 
resolve(List<? extends LoadValidationError>) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.processor.ResolverProcessor
Resolve.
resolve(SortOptionList, LocalNameList, CodedNodeSet.PropertyType[]) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolve(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[]) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolve(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolve() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
resolve(SortOptionList, LocalNameList, CodedNodeSet.PropertyType[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve an iterator over nodes matching the given criteria.
resolve(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve an iterator over nodes matching the given criteria, allowing for additional filters to be applied against the returned items.
resolve(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve an iterator over nodes matching the given criteria, allowing for additional filters and optionally populating full objects (e.g. concept or instance) for each returned reference.
resolve() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
Apply all of the restrictions, and return the result.
resolveAnnotationPropertyRelations(AssociationSource, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Create an association for the annotation properties that have a OWLNamedClass or OWLIndividual as RHS
resolveAnonymousClass(OWLClassExpression, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
This method handles the resolution of owl:Anonymous classes.
resolveAnonymousClass(OWLClass, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method handles the resolution of owl:Anonymous classes.
resolveAnonymousProperties(Entity, OWLClassExpression) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Resolve all of the coded nodes in the list, sorting by the supplied property (if any), resolving the supplied properties, resolving coded entries to the supplied depth and resolving associations to the supplied depth.
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Resolve all of the coded nodes in the list, sorting by the supplied property (if any), resolving the supplied properties, resolving coded entries to the supplied depth, resolving associations to the supplied depth, and allowing for additional filters to be applied against the returned items.
resolveAsList(ConceptReference, boolean, boolean, int, int, LocalNameList, CodedNodeSet.PropertyType[], SortOptionList, LocalNameList, int, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Resolve all of the coded nodes in the list, sorting by the supplied property (if any), resolving the supplied properties, resolving coded entries to the supplied depth, resolving associations to the supplied depth, and allowing for additional filters to be applied against the returned items.
resolveAssociation(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines an EMF concept and properties based on the given rdf source.
resolveAssociationDataByRevision(String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Resolve association data by revision.
resolveAssociationDataByRevision(String, String, String, String, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
resolveAssociationInstanceId(T) - Method in class org.lexgrid.loader.data.association.AbstractReproducibleIdResolver
 
resolveAssociationInstanceId(T) - Method in interface org.lexgrid.loader.data.association.AssociationInstanceIdResolver
Resolve multi attributes key.
resolveAssociationInstanceId(ParentIdHolder<AssociationSource>) - Method in class org.lexgrid.loader.data.association.ReproducibleAssociationInstanceIdResolver
 
resolveAssociationInstanceId(Mrrel) - Method in class org.lexgrid.loader.rrf.data.association.MrrelRuiAssociationInstanceIdResolver
 
resolveAssociationInstanceId(Mrsat) - Method in class org.lexgrid.loader.rrf.data.association.MrsatRuiAssociationInstanceIdResolver
 
resolveAssociationPredicates(CodingScheme) - Static method in class org.LexGrid.custom.relations.RelationsUtil
Returns the list of AssociationPredicates within the given coding scheme
resolveAssociationPredicates(CodingScheme, String) - Static method in class org.LexGrid.custom.relations.RelationsUtil
Returns the list of AssociationPredicates within the given coding scheme that matches the association_name.
resolveAssociationProperty(AssociationEntity, OWLObjectProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveAssociationProperty(AssociationEntity, OWLDataProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveAssociationProperty(AssociationEntity, RDFProperty) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Resolve all properties encapsulated by the RDFProperty and assign corresponding EMF properties to the given association.
resolveAssociationTargetByRevision(String, String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Resolve association target by revision.
resolveAssociationTargetByRevision(String, String, String, String, String, String) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
resolveBackward - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
resolveBulkMapping(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension
 
resolveBulkMapping(String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
resolveCodeSystemReferences(Set<CodingSchemeReference>) - Static method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.LexEVSSourceAssertedSearchServices
 
resolveCodeSystemReferences(Set<CodingSchemeReference>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
resolveCodingScheme(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
resolveCodingScheme(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return detailed coding scheme information given a specific tag or version identifier.
resolveCodingSchemeByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Resolve coding scheme by revision.
resolveCodingSchemeByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
resolveCodingSchemeCopyright(String, CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
resolveCodingSchemeCopyright(String, CodingSchemeVersionOrTag) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGService
Return coding scheme copyright given a specific tag or version identifier.
resolveCodingSchemeFromLocalName(String, String, String, String) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Resolve coding scheme from local name.
resolveCodingSchemeKey(String, String) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Resolve coding scheme key.
resolveCodingSchemeKey(String) - Static method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
Resolve coding scheme key.
resolveComplementOfRelations(AssociationSource, OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF complementOf relations based on OWL source.
resolveComplementOfRelations(AssociationSource, RDFSNamedClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF complementOf relations based on OWL source.
resolveConcept(OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines an EMF concept and properties based on the given rdf source.
resolveConcept(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines an EMF concept and properties based on the given rdf source.
resolveConcept(String, CodingSchemeVersionOrTag, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Returns a resolved concept for the specified code and scheme.
resolveConceptID(OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Return the concept identifier mapped to the given rdf resource, or the null if no mapping exists.
resolveConceptID(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Return the concept identifier mapped to the given rdf resource, or the null if no mapping exists.
resolveConceptIDfromIRI(IRI) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveConceptReference(ConceptReference, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
Resolve a ConceptReference.
resolveConceptReference(ResolvedConceptReference) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Resolve concept reference.
resolveConcepts(CodingSchemeSummary, String) - Method in class org.LexGrid.LexBIG.example.ScoreTerm
Resolves matching concepts for any word in the given term.
resolveCSVersion(String, Mappings, String, HashMap<String, String>) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Return the absolute reference for the supplied csName.
resolveCurrentEntryStateUid(I, String, VersionsDao.EntryStateType) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Resolve current entry state uid.
RESOLVED_AGAINST_CODING_SCHEME_VERSION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
RESOLVED_AGAINST_CODING_SCHEME_VERSION - Static variable in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
RESOLVED_VALUESET_CODING_SCHEME - Static variable in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
resolveDatatypePropertyRelations(AssociationSource, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Create an association for the datatype properties when the preference is both or association
ResolvedCodedNodeReference - Class in org.LexGrid.LexBIG.DataModel.Core
Resolved information for an entity identified by coding scheme and code.
ResolvedCodedNodeReference() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
 
ResolvedCodedNodeReferenceDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class ResolvedCodedNodeReferenceDescriptor.
ResolvedCodedNodeReferenceDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedCodedNodeReferenceDescriptor
 
ResolvedConceptReference - Class in org.LexGrid.LexBIG.DataModel.Core
Resolved information for a concept.
ResolvedConceptReference() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.ResolvedConceptReference
 
ResolvedConceptReferenceConceptCodeSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.CodeSort.ResolvedConceptReferenceConceptCodeSort
 
ResolvedConceptReferenceDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class ResolvedConceptReferenceDescriptor.
ResolvedConceptReferenceDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.ResolvedConceptReferenceDescriptor
 
ResolvedConceptReferenceEntityDescritpionSort() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Sort.EntityDescriptionSort.ResolvedConceptReferenceEntityDescritpionSort
 
ResolvedConceptReferenceList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class ResolvedConceptReferenceList.
ResolvedConceptReferenceList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
ResolvedConceptReferenceListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class ResolvedConceptReferenceListDescriptor.
ResolvedConceptReferenceListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.ResolvedConceptReferenceListDescriptor
 
ResolvedConceptReferencesIterator - Interface in org.LexGrid.LexBIG.Utility.Iterators
An iterator for retrieving Resolved coding scheme references
ResolvedConceptReferencesIteratorAdapter - Class in org.LexGrid.LexBIG.Impl.helpers
The Class ResolvedConceptReferencesIteratorAdapter.
ResolvedConceptReferencesIteratorAdapter(ResolvedConceptReferencesIterator) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorAdapter
Instantiates a new resolved concept references iterator adapter.
ResolvedConceptReferencesIteratorAdapter.IteratorExceptionHandler - Interface in org.LexGrid.LexBIG.Impl.helpers
The Interface IteratorExceptionHandler.
ResolvedConceptReferencesIteratorImpl - Class in org.LexGrid.LexBIG.Impl.helpers
Implements iterator behavior for fetching coded node sets.
ResolvedConceptReferencesIteratorImpl() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
ResolvedConceptReferencesIteratorImpl(CodeHolder, LocalNameList, CodedNodeSet.PropertyType[], Filter[], boolean) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
ResolvedConceptReferencesIteratorImpl.CleanUpThread - Class in org.LexGrid.LexBIG.Impl.helpers
 
ResolvedConceptReferencesIteratorImplTest - Class in org.LexGrid.LexBIG.Impl.helpers
The Class ResolvedConceptReferencesIteratorImplTest.
ResolvedConceptReferencesIteratorImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImplTest
 
ResolvedConceptReferenceTransformer - Interface in org.LexGrid.LexBIG.Impl.helpers
 
resolveDefaultPrefix() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
resolveDefaultPrefix() - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Resolve default prefix.
resolveDefinitionEntryByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
resolveDefinitionEntryByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
resolveDefinitionEntryByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
resolveDefinitionEntryByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Resolve definition entry by revision.
resolveDepth - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
resolveDifferentFromRelations(AssociationSource, OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF differentFrom relations based on OWL source.
resolveDifferentFromRelations(AssociationSource, RDFIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF differentFrom relations based on OWL source.
resolveDisjointWithRelations(AssociationSource, OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF DisjointWith relations based on OWL source.
resolveDisjointWithRelations(AssociationSource, RDFSNamedClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF equivalentClass relations based on OWL source.
ResolvedLoadValidationError - Interface in edu.mayo.informatics.lexgrid.convert.validator.error
The Interface ResolvedLoadValidationError.
ResolvedPickListEntry - Class in org.lexgrid.valuesets.dto
Bean for resolved pick list entries.
ResolvedPickListEntry() - Constructor for class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
ResolvedPickListEntryList - Class in org.lexgrid.valuesets.dto
Class to hold list of resolved pick list entries.
ResolvedPickListEntryList() - Constructor for class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
ResolvedValueSetCodedNodeSet - Class in org.lexgrid.valuesets.dto
Contains coding scheme version reference list that was used to resolve the value domain and the coded node set.
ResolvedValueSetCodedNodeSet() - Constructor for class org.lexgrid.valuesets.dto.ResolvedValueSetCodedNodeSet
 
ResolvedValueSetDefinition - Class in org.lexgrid.valuesets.dto
A resolved Value Domain definition containing the coding scheme version reference list that was used to resolve the value domain and an iterator for resolved concepts.
ResolvedValueSetDefinition() - Constructor for class org.lexgrid.valuesets.dto.ResolvedValueSetDefinition
 
ResolvedValueSetDefinitionLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The Interface ValueSetDefinitionLoader.
ResolvedValueSetDefinitionLoaderImpl - Class in org.lexgrid.loader
 
ResolvedValueSetDefinitionLoaderImpl() - Constructor for class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
ResolvedValueSetLoader - Class in org.LexGrid.LexBIG.gui.load
 
ResolvedValueSetLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.ResolvedValueSetLoader
 
ResolvedValueSetLoader(LB_VSD_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.ResolvedValueSetLoader
 
resolveEntityByDate(String, String, String, String, Date) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Resolve entity by date.
resolveEntityByDate(String, String, String, String, Date) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
resolveEntityByRevision(String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Resolve entity by revision.
resolveEntityByRevision(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
resolveEntityProperties(Entity, OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Resolve and assign all property information contained by the given RDF resource to the EMF Entity.
resolveEntityProperties(Entity, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Resolve and assign all property information contained by the given RDF resource to the EMF Entity.
resolveEntryByRevision(I, String, String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Resolve entry by revision.
resolveEquivalentClassRelations(AssociationSource, OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF equivalentClass relations based on OWL source.
resolveEquivalentClassRelations(AssociationSource, RDFSNamedClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF equivalentClass relations based on OWL source.
resolveError(LoadValidationError) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
 
resolveError(LoadValidationError) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.resolution.Resolver
Resolve error.
resolveForward - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
resolveHistoryPrefix() - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
resolveHistoryPrefix() - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Resolve history prefix.
resolveIndividual(OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines an EMF instance.
resolveIndividual(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines an EMF instance.
resolveIndividualProperties(Entity, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
This method associates OWLIndividuals and their properties: OWLDatatype and OWLObject.
resolveInstanceID(OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Return the instance identifier mapped to the given rdf resource name, or the rdf class name if no mapping exists.
resolveInstanceID(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Return the instance identifier mapped to the given rdf resource name, or the rdf class name if no mapping exists.
resolveInstanceIDfromIRI(IRI) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveKey(String, String) - Method in interface org.lexgrid.loader.database.key.AssociationInstanceKeyResolver
 
resolveKey(String, String, String, String) - Method in class org.lexgrid.loader.database.key.AssociationPredicateCreatingKeyResolver
 
resolveKey(String, String, String, String) - Method in interface org.lexgrid.loader.database.key.AssociationPredicateKeyResolver
 
resolveKey(String, String, String, String) - Method in class org.lexgrid.loader.database.key.DatabaseServiceEntityKeyResolver
 
resolveKey(String, String, String, String) - Method in interface org.lexgrid.loader.database.key.EntityKeyResolver
 
resolveKey(String, String, String, String, String) - Method in interface org.lexgrid.loader.database.key.EntityPropertyKeyResolver
 
resolveKey(String, String) - Method in class org.lexgrid.loader.database.key.MrsatAssociatinoInstanceKeyResolver
 
resolveKey(String, String, String, String) - Method in class org.lexgrid.loader.database.key.NoopEntityKeyResolver
 
resolveLabel(OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Return the first label assigned to the given resource, or the rdf resource name if no labels are assigned.
resolveLabel(RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Return the first label assigned to the given resource, or the rdf resource name if no labels are assigned.
resolveLabels(OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveMapping() - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Resolve mapping.
resolveMapping(List<MappingExtension.MappingSortOption>) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Resolve mapping.
resolveMapping(String, CodingSchemeVersionOrTag, String, List<MappingExtension.MappingSortOption>) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension
Resolve the mapping coding scheme.
resolveMapping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
resolveMapping(List<MappingExtension.MappingSortOption>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
resolveMapping(String, CodingSchemeVersionOrTag, String, List<MappingExtension.MappingSortOption>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.MappingExtensionImpl
 
resolveNamespace(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
 
resolveNamespace(AbsoluteCodingSchemeVersionReference, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
 
resolveNonSourceAssertedValueSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
resolveOWLObjectPropertyRelations(AssociationSource, OWLEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF class RDF properties.
resolveOWLObjectPropertyRelations(AssociationSource, RDFResource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF class RDF properties.
resolvePickList(String, AbsoluteCodingSchemeVersionReferenceList) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
resolvePickList(String, boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
resolvePickList(String, Integer, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
resolvePickList(PickListDefinition, boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
resolvePickList(String, boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Resolves pickList definition for supplied pickListId.
resolvePickList(String, Integer, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Resolves pickList definition for supplied pickListId.
resolvePickList(PickListDefinition, boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Resolves pick list definition object supplied against supplied coding scheme version list.
resolvePickListByRevision(String, String, Integer) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
resolvePickListByRevision(String, String, Integer) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
resolvePickListByRevision(String, String, Integer) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
resolvePickListByRevision(String, String, Integer) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
 
resolvePickListDefinitionByDate(String, Date, Integer) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Resolve pick list definition by date.
resolvePickListDefinitionByDate(String, Date, Integer) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
resolvePickListDefinitionByRevision(String, String, Integer) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Resolve pick list definition by revision.
resolvePickListDefinitionByRevision(String, String, Integer) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
resolvePickListDefinitionPropertyByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
resolvePickListDefinitionPropertyByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Resolve pick list definition property by revision.
resolvePickListEntryNodeByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Resolve pick list entry node by revision.
resolvePickListEntryNodeByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
resolvePickListEntryNodePropertyByRevision(String, String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
resolvePickListEntryNodePropertyByRevision(String, String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Resolve pick list entry node property by revision.
resolvePickListForTerm(String, String, String, String, String[], boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
resolvePickListForTerm(String, String, String, String, String[], boolean, AbsoluteCodingSchemeVersionReferenceList, String) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
Resolves pickList definition for supplied arguments.
resolvePLEntryNodeByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
resolvePLEntryNodeByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
resolvePrefixForCodingScheme(String, String) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
resolvePrefixForCodingScheme(String) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
resolvePrefixForCodingScheme(String, String) - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Resolve prefix for coding scheme.
resolvePrefixForCodingScheme(String) - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Resolve prefix for coding scheme.
resolvePrefixForHistoryCodingScheme(String) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
resolvePrefixForHistoryCodingScheme(String) - Method in interface org.lexevs.dao.database.prefix.PrefixResolver
Resolve prefix for history coding scheme.
resolveProp(OWLAnnotationAssertionAxiom, String, String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Instantiate and return a new EMF property based on the provided values.
resolveProp(RDFProperty, String, String, String, String, String, String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Instantiate and return a new EMF property based on the provided values.
resolveProperties(Entity, String) - Static method in class org.LexGrid.custom.concepts.EntitiesUtil
Returns the list of property object for a Entity that matches the given propertyName.
resolvePropertiesOfCodingSchemeByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Resolve properties of coding scheme by revision.
resolvePropertiesOfCodingSchemeByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
resolvePropertiesOfEntityByRevision(String, String, String, String, String) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Resolve properties of entity by revision.
resolvePropertiesOfEntityByRevision(String, String, String, String, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
resolvePropertiesOfRelationByRevision(String, String, String, String) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Resolve properties of relation by revision.
resolvePropertiesOfRelationByRevision(String, String, String, String) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
resolveProperty(Entity, String) - Static method in class org.LexGrid.custom.concepts.EntitiesUtil
Returns the first matching property object for a concept that matches the given propertyName.
resolvePunnedIndividual(OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
Resolver - Interface in edu.mayo.informatics.lexgrid.convert.validator.resolution
The Interface Resolver.
resolveRDFText(RDFResource, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Return the text value assigned to the given rdf property.
resolveRdfTypeRelations(AssociationSource, OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines EMF RDFType relations based on OWL source.
resolveRdfTypeRelations(AssociationSource, RDFIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF RDFType relations based on OWL source.
resolveRelationsByRevision(String, String, String, String) - Method in interface org.lexevs.dao.database.service.relation.RelationService
Resolve relations by revision.
resolveRelationsByRevision(String, String, String, String) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
resolveRelationships(ConceptReference, boolean, boolean, int, int, ArrayList<Operation>, String, String, String, boolean) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
resolveRelationSource(AssociationPredicate, String) - Static method in class org.LexGrid.custom.relations.RelationsUtil
Returns a source within a specific relation with the given code; null if not available.
resolveRelationSources(Entity, List<AssociationPredicate>) - Static method in class org.LexGrid.custom.relations.RelationsUtil
 
resolveRelationTarget(AssociationSource, String) - Static method in class org.LexGrid.custom.relations.RelationsUtil
Returns a relation target within a specific source with the given code; null if not available.
resolveRelationTargets(Entity, List<AssociationPredicate>) - Static method in class org.LexGrid.custom.relations.RelationsUtil
 
resolveResolvedConceptReference(String, String, LocalNameList, CodedNodeSet.PropertyType[], NamespaceHandler, T) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Resolve resolved concept reference.
resolveResolvedConceptReference(String, String, LocalNameList, CodedNodeSet.PropertyType[], T) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Resolve resolved concept reference.
resolveRoots(String, String, String, RootsResolver.ResolveDirection, GraphQuery, SortOptionList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
resolveRoots(String, String, String, RootsResolver.ResolveDirection, GraphQuery, SortOptionList, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.root.NullFocusRootsResolver
 
resolveRoots(String, String, String, RootsResolver.ResolveDirection, GraphQuery, SortOptionList) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.root.RootsResolver
 
resolveRoots(String, String, String, RootsResolver.ResolveDirection, GraphQuery, SortOptionList, int, int) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.root.RootsResolver
 
ResolverProcessor - Interface in edu.mayo.informatics.lexgrid.convert.validator.processor
The Interface ResolverProcessor.
resolveSameAsRelations(AssociationSource, OWLNamedIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Defines sameAs relations based on OWL source.
resolveSameAsRelations(AssociationSource, RDFIndividual) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF complementOf relations based on OWL source.
resolveSubClassOfRelations(AssociationSource, OWLClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveSubClassOfRelations(AssociationSource, RDFSNamedClass) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Defines EMF subClassOf relations based on OWL source.
resolveToList(SortOptionList, LocalNameList, CodedNodeSet.PropertyType[], int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolveToList(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolveToList(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], boolean, int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
resolveToList(SortOptionList, LocalNameList, CodedNodeSet.PropertyType[], int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve the set to a list of nodes sorted by the supplied parameters, resolving all of the properties named in the list.
resolveToList(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve the set to a list of nodes sorted by the supplied parameters, resolving all of the properties named in the list, and allowing for additional filters to be applied against the returned items.
resolveToList(SortOptionList, LocalNameList, LocalNameList, CodedNodeSet.PropertyType[], boolean, int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Resolve the set to a list of nodes sorted by the supplied parameters, resolving all of the properties named in the list, and allowing for additional filters to be applied against the returned items.
resolveUpdatedVSToReferences(String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
resolveUpdatedVSToReferences(String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
ResolveValueSet - Class in org.LexGrid.LexBIG.example
Example showing how to resolve a value set definition.
ResolveValueSet() - Constructor for class org.LexGrid.LexBIG.example.ResolveValueSet
 
resolveValueSetDef(URI) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
resolveValueSetDef(URI, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
resolveValueSetDef(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
resolveValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, SortOptionList) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
resolveValueSetDefinition(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String, SortOptionList) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
resolveValueSetDefinition(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String, HashMap<String, ValueSetDefinition>, SortOptionList) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
resolveValueSetDefinition(URI, String, AbsoluteCodingSchemeVersionReferenceList, String, SortOptionList) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolve a value set definition using the supplied set of coding scheme versions.
resolveValueSetDefinition(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String, SortOptionList) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolve a value set definition provided using the supplied set of coding scheme versions.
resolveValueSetDefinition(ValueSetDefinition, AbsoluteCodingSchemeVersionReferenceList, String, HashMap<String, ValueSetDefinition>, SortOptionList) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Resolve a value set definition provided using the supplied set of coding scheme versions.
resolveValueSetDefinitionPropertyByRevision(String, String, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
resolveValueSetDefinitionPropertyByRevision(String, String, String) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Resolve value set definition property by revision.
resolveValueSetDefOld(URI) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
Deprecated.
resolveVSPropertyByRevision(String, String, String) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
resolveVSPropertyByRevision(String, String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
resolveXMLTagsAndValues(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
resolveXMLTagsAndValues(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Returns a map from the xml tags imbedded within the given source string to associated text values.
Resource - Class in edu.mayo.informatics.resourcereader.core.impl
The class provides for a single logger to log messages
Resource() - Constructor for class edu.mayo.informatics.resourcereader.core.impl.Resource
 
ResourceCollection - Interface in edu.mayo.informatics.resourcereader.core.IF
Resource Collection Interface
ResourceContents - Interface in edu.mayo.informatics.resourcereader.core.IF
Interface for ResourceContents
ResourceEntity - Interface in edu.mayo.informatics.resourcereader.core.IF
Empty Resource Entity interface
ResourceException - Exception in edu.mayo.informatics.resourcereader.core.IF
Resource Exception
ResourceException(String) - Constructor for exception edu.mayo.informatics.resourcereader.core.IF.ResourceException
 
ResourceHeader - Interface in edu.mayo.informatics.resourcereader.core.IF
Interface to get at the ResourceHeader
ResourceManager - Class in org.lexevs.system
Deprecated.
Use LexEvsResourceManagingService
ResourceManager() - Constructor for class org.lexevs.system.ResourceManager
Deprecated.
 
ResourceManagerTest - Class in org.LexGrid.LexBIG.Impl.dataAccess
The Class ResourceManagerTest.
ResourceManagerTest() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.ResourceManagerTest
 
ResourceManifest - Interface in edu.mayo.informatics.resourcereader.core.IF
ResourceManifest interface
ResourceReader - Interface in edu.mayo.informatics.resourcereader.core.IF
The minimum interface that must be implemented by any ResourceReader
ResourceType - Class in edu.mayo.informatics.resourcereader.core.IF
ResourceType
ResourceType(String) - Constructor for class edu.mayo.informatics.resourcereader.core.IF.ResourceType
 
ResourceUtils - Class in edu.mayo.informatics.resourcereader.core
Class ResourceUtils
ResourceUtils() - Constructor for class edu.mayo.informatics.resourcereader.core.ResourceUtils
 
RESTRICT_TO_CODES - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
RESTRICT_TO_SOURCE_CODES - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
RESTRICT_TO_TARGET_CODES - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
RestrictingMappingTripleIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class RestrictingMappingTripleIterator.
RestrictingMappingTripleIterator(String, String, String, CodedNodeSet, CodedNodeSet, CodedNodeSet, List<CodedNodeSetBackedMapping.RelationshipRestriction>, List<MappingExtension.MappingSortOption>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleIterator
Instantiates a new mapping triple iterator.
RestrictingMappingTripleParameterBean(String, String, String, String, String, String, String, List<ConceptReference>, List<ConceptReference>, List<ConceptReference>, List<CodedNodeGraphService.Sort>) - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
RestrictingMappingTripleUidIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping
The Class RestrictingMappingTripleUidIterator.
RestrictingMappingTripleUidIterator() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
 
RestrictingMappingTripleUidIterator(String, String, String, AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences, CodedNodeSet, CodedNodeSet, CodedNodeSet, List<MappingExtension.MappingSortOption>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.RestrictingMappingTripleUidIterator
Instantiates a new restricting mapping triple uid iterator.
Restriction - Class in org.LexGrid.LexBIG.gui.restrictions
Parent class for all restrictions.
Restriction() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.Restriction
 
Restriction - Interface in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.interfaces
Interface for all operation holders that are Restrictions.
Restriction - Interface in org.LexGrid.LexBIG.Impl.codedNodeSetOperations.interfaces
Interface for all operation holders that are Restrictions.
RestrictionGUI - Class in org.LexGrid.LexBIG.gui.restrictions
Shell to let you add and edit restrictions.
RestrictionGUI(LB_GUI, Restriction) - Constructor for class org.LexGrid.LexBIG.gui.restrictions.RestrictionGUI
 
RestrictionImplementations - Class in org.LexGrid.LexBIG.Impl.dataAccess
Legacy documentation below: Currently we are using Lucene 5.3.1 which allows us to use the toParentBlockJoint mechanism to group related entity properties.
RestrictionImplementations() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.RestrictionImplementations
 
restrictions - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
restrictToAnonymous(Boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
restrictToAnonymous(CodedNodeSet.AnonymousOption) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToAnonymous - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToStatus operation.
RestrictToAnonymous(CodedNodeSet.AnonymousOption) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToAnonymous
 
restrictToAnonymous(Boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToAnonymous(Boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToAnonymous(Boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToAnonymous(Boolean) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
 
restrictToAnonymous(Boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return a graph that contains only the codes that are either Anonymous, Non-Anonymous, or Not Specified in the supplied list, and all edges that still have a source and target code remaining.
restrictToAnonymous(CodedNodeSet.AnonymousOption) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Restrict the set to anonymous (or non-anonymous) nodes.
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToAssociations - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the Associations call on CodedNodeGraph.
RestrictToAssociations(NameAndValueList, NameAndValueList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToAssociations
 
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to the nodes that participate as a source or target of the named association and, if supplied, the named association qualifiers.
restrictToAssociations(NameAndValueList, NameAndValueList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to the nodes that participate as a source or target of the named association and, if supplied, the named association qualifiers.
restrictToCodes(ConceptReferenceList, MappingExtension.Mapping.SearchContext) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Restrict to codes.
restrictToCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToCodes - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToCodes call on CodedNodeGraph.
RestrictToCodes(CodedNodeSet) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToCodes
 
RestrictToCodes(ConceptReference) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToCodes
 
restrictToCodes(ConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToCodes - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToCodes operation.
RestrictToCodes(ConceptReferenceList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToCodes
 
RestrictToCodes() - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToCodes
Do not use this method.
restrictToCodes(ConceptReferenceList, MappingExtension.Mapping.SearchContext) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
restrictToCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Return a graph that contains only the codes that are present in the supplied list, and all edges that still have a source and target code remaining.
restrictToCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return a graph that contains only the codes that are present in the supplied list, and all edges that still have a source and target code remaining.
restrictToCodes(ConceptReferenceList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Restrict the set to the list of codes in the supplied reference list
restrictToCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToCodeSystem - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToCodeSystem call on CodedNodeGraph.
RestrictToCodeSystem(String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToCodeSystem
 
restrictToCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToCodeSystem(String) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to codes (source and target) that originate from the supplied code system.
restrictToCodeSystem(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to codes (source and target) that originate from the supplied code system.
restrictToCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
restrictToCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
Restrict the search to a particular coding scheme.
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToDirectionalNames - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the directionalNames call on CodedNodeGraph.
RestrictToDirectionalNames(NameAndValueList, NameAndValueList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToDirectionalNames
 
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to the nodes that participate as a source or target of an association whose directional name matches the one provided and, if supplied, the named association qualifiers.
restrictToDirectionalNames(NameAndValueList, NameAndValueList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to the nodes that participate as a source or target of an association whose directional name matches the one provided and, if supplied, the named association qualifiers.
restrictToEntityTypes(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
restrictToEntityTypes(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToEntityTypes - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToEntityTypes operation.
RestrictToEntityTypes(LocalNameList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToEntityTypes
 
RestrictToEntityTypes(String[]) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToEntityTypes
 
restrictToEntityTypes(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToEntityTypes(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToEntityTypes(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToEntityTypes(LocalNameList) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
 
restrictToEntityTypes(LocalNameList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return a graph that contains only the codes that contain an Entity Type in the supplied list, and all edges that still have a source and target code remaining.
restrictToMappingCodes(ConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
restrictToMappingCodes(ConceptReferenceList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
 
restrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String, MappingExtension.Mapping.SearchContext) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Restrict to matching designations.
restrictToMatchingDesignations(String, boolean, String, String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
Deprecated. 
restrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToMatchingDesignations - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToMatchingDesignations operation.
RestrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
RestrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingDesignations
 
restrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String, MappingExtension.Mapping.SearchContext) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
restrictToMatchingDesignations(String, boolean, String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Deprecated.
see restrictToMatchingDesignations(String, SearchDesignationOption, String, String)
restrictToMatchingDesignations(String, CodedNodeSet.SearchDesignationOption, String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Restrict the list to the set of nodes with designations matching the supplied text, interpreted using the supplied matching algorithm and language.
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String, String, MappingExtension.Mapping.SearchContext) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Restrict to matching properties.
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String, String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], String, String, String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToMatchingProperties - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToMatchingProperties operation.
RestrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String, String, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToMatchingProperties
 
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String, String, MappingExtension.Mapping.SearchContext) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], String, String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Remove all elements from the set that do not have one or more properties that match the supplied property names, type, and text.
restrictToMatchingProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Remove all elements from the set that do not have one or more properties that match the given criteria.
restrictToProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
restrictToProperties(LocalNameList, CodedNodeSet.PropertyType[]) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToProperties - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToProperties operation.
RestrictToProperties(LocalNameList, LocalNameList, NameAndValueList, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
RestrictToProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
RestrictToProperties() - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
This constructor is for starting a bit set that matches all documents...
restrictToProperties(String[]) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
restrictToProperties(LocalNameList, CodedNodeSet.PropertyType[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Remove all elements from the set that do not have one or more properties that match the supplied property list.
restrictToProperties(LocalNameList, CodedNodeSet.PropertyType[], LocalNameList, LocalNameList, NameAndValueList) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Remove all elements from the set that do not have one or more properties that match the given criteria.
restrictToProperties(String[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
Restrict the search to a particular property.
restrictToPropertyParents(String[]) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
restrictToPropertyParents(String[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
Restrict the search by the parents of the metadata elements.
restrictToRelationship(String, CodedNodeSet.SearchDesignationOption, String, String, LocalNameList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping
Restrict to relationship.
restrictToRelationship(String, CodedNodeSet.SearchDesignationOption, String, String, LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping
 
restrictToSourceCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToSourceCodes - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToSourceCodes call on CodedNodeGraph.
RestrictToSourceCodes(CodedNodeSet) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToSourceCodes
 
RestrictToSourceCodes(ConceptReference) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToSourceCodes
 
RestrictToSourceCodes(ConceptReferenceList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToSourceCodes
 
restrictToSourceCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToSourceCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToSourceCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToSourceCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to associations that have one of the codes in the supplied list as source codes.
restrictToSourceCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to associations that have one of the codes in the supplied list as source codes.
restrictToSourceCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToSourceCodeSystem - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToSourceCodeSystem call on CodedNodeGraph.
RestrictToSourceCodeSystem(String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToSourceCodeSystem
 
restrictToSourceCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToSourceCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToSourceCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToSourceCodeSystem(String) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to edges that have codes from the specified code system as a source.
restrictToSourceCodeSystem(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to edges that have codes from the specified code system as a source.
restrictToStatus(CodedNodeSet.ActiveOption, String[]) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
RestrictToStatus - Class in org.LexGrid.LexBIG.Impl.codedNodeSetOperations
Holder for the RestrictToStatus operation.
RestrictToStatus(CodedNodeSet.ActiveOption, String[]) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToStatus
 
restrictToStatus(CodedNodeSet.ActiveOption, String[]) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Restrict the set to nodes matching the given status criteria.
restrictToTargetCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToTargetCodes - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToTargetCodes call on CodedNodeGraph.
RestrictToTargetCodes(CodedNodeSet) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToTargetCodes
 
RestrictToTargetCodes(ConceptReference) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToTargetCodes
 
RestrictToTargetCodes(ConceptReferenceList) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToTargetCodes
 
restrictToTargetCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToTargetCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToTargetCodes(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToTargetCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to associations that have one of the codes in the supplied list as target codes.
restrictToTargetCodes(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to associations that have one of the codes in the supplied list as target codes.
restrictToTargetCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
RestrictToTargetCodeSystem - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for the RestrictToCodeSystem call on CodedNodeGraph.
RestrictToTargetCodeSystem(String) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.RestrictToTargetCodeSystem
 
restrictToTargetCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
 
restrictToTargetCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
restrictToTargetCodeSystem(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.query.DefaultGraphQueryBuilder
 
restrictToTargetCodeSystem(String) - Method in interface org.LexGrid.LexBIG.Impl.pagedgraph.query.GraphQueryBuilder
Restrict the graph to edges that have codes from the specified code system as a target.
restrictToTargetCodeSystem(String) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Restrict the graph to edges that have codes from the specified code system as a target.
restrictToValue(String, String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
restrictToValue(String, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceMetadata
Restrict the result to the metadata elements that match the supplied string, using the supplied matching algorithm
ResultComparator<T> - Class in org.LexGrid.LexBIG.Impl.helpers.comparator
The Class ResultComparator.
ResultComparator() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Instantiates a new result comparator.
ResultComparator(List<SortOption>, Class<T>) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Instantiates a new result comparator.
ResultComparator(SortOptionList, Class<T>) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
 
ResultComparator(SortOption[], Class<T>) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Instantiates a new result comparator.
ResultComparatorTest - Class in org.LexGrid.LexBIG.Impl.helpers.comparator
The Class ResultComparatorTest.
ResultComparatorTest() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
 
resumeMEDRT(URI, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
Resume umls.
resumeMEDRT(URI, String, String) - Method in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
resumeMeta(URI, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
Resume meta.
resumeMeta(URI, String, String) - Method in class org.lexgrid.loader.meta.MetaBatchLoaderImpl
 
resumeUmls(URI, String, String, String) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
Resume umls.
resumeUmls(URI, String, String, String) - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
retrieveCodedNodeSet(String) - Method in class org.lexgrid.valuesets.helper.compiler.AbstractCachingValueSetDefinitionCompilerDecorator
Retrieve coded node set.
retrieveCodedNodeSet(String) - Method in class org.lexgrid.valuesets.helper.compiler.FileSystemCachingValueSetDefinitionCompilerDecorator
Retrieve coded node set.
retrieveEntityForExistingMappingScheme(CodingScheme, String, String, String, String, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
retrieveEntityForMappingScheme(String, String, String, EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
REVERSE_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant REVERSE_PREFIX.
REVERSE_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The REVERS e_ propert y_ valu e_ field.
reverseAssoc(LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, Association, AssociationList, Map<String, EntityDescription>) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Recursive call to reverse order of the given association list, adding results to the given list.
reverseTermsInPropertyValue(String) - Static method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
Reverse terms in property value.
RevisableAbstractDatabaseService<T extends Versionable,I extends RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId> - Class in org.lexevs.dao.database.service
The Class RevisableAbstractDatabaseService.
RevisableAbstractDatabaseService() - Constructor for class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
 
RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId - Class in org.lexevs.dao.database.service
The Class CodingSchemeUriVersionBasedEntryId.
RevisableAbstractDatabaseService.ParentUidReferencingId - Class in org.lexevs.dao.database.service
The Class ParentUidReferencingId.
RevisableAbstractDatabaseService.UpdateTemplate - Interface in org.lexevs.dao.database.service
The Interface UpdateTemplate.
revise(String, String, String, String, String, String, AssociationData) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Revise.
revise(String, String, String, String, AssociationSource, AssociationData) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Revise.
revise(String, String, String, String, String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Revise.
revise(String, String, String, String, AssociationSource, AssociationTarget) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Revise.
revise(String, String, String, String, AssociationSource, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
revise(String, String, String, String, String, String, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
revise(String, String, String, String, AssociationSource, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
revise(String, String, String, String, String, String, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
revise(CodingScheme, String, Boolean) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
revise the codingScheme.
revise(CodingScheme, String, Boolean) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
revise(String, String, Entity) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Revise.
revise(String, String, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
revise(String, String, Relations) - Method in interface org.lexevs.dao.database.service.relation.RelationService
version API to revise relations.
revise(String, String, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
revise(PickListDefinition, Mappings, String) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Revise.
revise(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Revise.
revise(ValueSetDefinition, Mappings, String) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Revise.
revise(PickListDefinition, Mappings, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
revise(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
revise(ValueSetDefinition, Mappings, String) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
revise(String, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
revise(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Revise.
reviseCodingSchemeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Revise a coding scheme property.
reviseCodingSchemeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
reviseEntityProperty(String, String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Revise a entity property.
reviseEntityProperty(String, String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
ReviseEvent<T> - Class in org.lexevs.dao.database.service.event.revision
The Class ReviseEvent.
ReviseEvent() - Constructor for class org.lexevs.dao.database.service.event.revision.ReviseEvent
 
revisePickListDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
revisePickListDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Revise pick list definition property.
revisePickListEntryNodeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
revisePickListEntryNodeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Revise pick list entry node property.
reviseRelationProperty(String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Revise a relations property.
reviseRelationProperty(String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
reviseValueSetDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
reviseValueSetDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Revise value set definition property.
Revision - Class in org.LexGrid.versions
An ordered collection of state changes that define the transformation of a set of resources from one consistent state to another.
Revision() - Constructor for class org.LexGrid.versions.Revision
 
RevisionDao - Interface in org.lexevs.dao.database.access.revision
The Interface RevisionDao.
RevisionDescriptor - Class in org.LexGrid.versions.descriptors
Class RevisionDescriptor.
RevisionDescriptor() - Constructor for class org.LexGrid.versions.descriptors.RevisionDescriptor
 
REVISIONID - Static variable in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
RevolvedValueSetSelectionMenu - Class in org.LexGrid.LexBIG.example
Helper class used to display a list of available code systems and return the user selection.
RevolvedValueSetSelectionMenu() - Constructor for class org.LexGrid.LexBIG.example.RevolvedValueSetSelectionMenu
 
rewrite(IndexReader) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
RG_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
RgAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
RgAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.RgAssocQualResolver
 
ROLE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
role_ - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
ROLE_DEF - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
RoleDef - Class in org.lexgrid.lexevs.ndfrt.data
 
RoleDef() - Constructor for class org.lexgrid.lexevs.ndfrt.data.RoleDef
 
roles - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
rollback() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
rollback(Savepoint) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
ROOT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
ROOT - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
ROOT - Static variable in class org.LexGrid.LexBIG.Impl.pagedgraph.root.AbstractEndNode
 
Root(String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.root.AbstractEndNode.Root
 
ROOT_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ROOT_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ROOT_CODE - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
ROOT_CONCEPT - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
ROOT_DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ROOT_DESCRIPTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ROOT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
ROOT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
ROOT_RECALC - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
ROOT_URI - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
RootBuilder - Interface in org.lexevs.dao.database.operation.root
 
rootConcept(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
RootConceptReferenceIterator - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging
The Class AssociatedConceptIterator.
RootConceptReferenceIterator(String, String, String, RootsResolver.ResolveDirection, GraphQuery, SortOptionList) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.RootConceptReferenceIterator
 
RootNodeAddingDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
The Class RootNodeAddingDecorator.
RootNodeAddingDecorator(ItemProcessor<I, O>) - Constructor for class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Instantiates a new root node adding decorator.
RootNodeResolver<I> - Interface in org.lexgrid.loader.processor.support
The Interface RootNodeResolver.
RootResolvedConceptReferenceIterator() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
RootResolvedConceptReferenceIterator(LazyLoadableResolvedConceptReferenceList) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
RootResolvingNodeDecorator<I,O> - Interface in org.lexgrid.loader.processor.decorator
 
RootsResolver - Interface in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
RootsResolver.ResolveDirection - Enum in org.LexGrid.LexBIG.Impl.pagedgraph.root
 
RRF_PARTITION_NUMBER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The RR f_ partitio n_ number.
rrfField - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
RrfFilePartitioner - Class in org.lexgrid.loader.rrf.partition
The Class RrfFilePartitioner.
RrfFilePartitioner() - Constructor for class org.lexgrid.loader.rrf.partition.RrfFilePartitioner
 
RrfFilePartitionerTest - Class in org.lexgrid.loader.rrf.partition
The Class RrfFilePartitioner.
RrfFilePartitionerTest() - Constructor for class org.lexgrid.loader.rrf.partition.RrfFilePartitionerTest
 
RRFFiles - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Format interface for converting RRF files to SQL.
RRFFiles() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
RRFFiles(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
rrfInverse - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
RRFLineReader - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
RRFLineReader(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.RRFLineReader
 
RrfLoaderConstants - Class in org.lexgrid.loader.rrf.constants
The Class RrfLoaderConstants.
RrfLoaderConstants() - Constructor for class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
RrfLoaderConstants.RrfRelationType - Enum in org.lexgrid.loader.rrf.constants
The Enum RrfRelationType.
rrfName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
rrfSAB - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
rrfSourceDirectionalityReversed - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
RSub - Variable in class org.LexGrid.util.file.CopyrightFieldScrubber
 
RSub - Variable in class org.LexGrid.util.file.CopyrightScrubber
 
RubricProcessor - Interface in edu.mayo.informatics.lexgrid.convert.directConversions.claml.interfaces
 
RUI - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
RUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
RuiAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
RuiAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.RuiAssocQualResolver
 
run() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
Runs the conversion.
run() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
Runs the conversion.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ActivateScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.BuildAssertedValueSetIndex
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.DeactivateScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ExportLgXML
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ExportOBO
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ExportOwlRdf
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ListExtensions
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ListLexevsVersion
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.ListSchemes
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.Load
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadLgXML
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadManifest
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadMedDRA
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadMetaBatchWithMetadata
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadMetadata
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadMIFVocabulary
 
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadMrMap
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadNCIHistory
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadOBO
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadOWL
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadOWL2
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadText
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadUmlsBatchWithMetadata
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadUMLSHistory
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.LoadUMLSSemnet
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RebuildIndex
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RebuildTransitivityTable
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RemoveIndex
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RemoveMetadata
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RemoveScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.RemoveTagScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.SourceAssertedValueSetDefinitionLauncher
 
run(String[]) - Method in class org.LexGrid.LexBIG.admin.SupplementScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.TagScheme
Primary entry point for the program.
run(String[]) - Method in class org.LexGrid.LexBIG.admin.TransferScheme
Primary entry point for the program.
run(LexBIGService, LexBIGServiceConvenienceMethods, String, CodingSchemeVersionOrTag, SupportedHierarchy, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForCode
Prints the tree for an individual code.
run(String, String) - Method in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource
Process the provided code, constraining relationships to the given source abbreviation.
run(String) - Method in class org.LexGrid.LexBIG.example.CheckForConceptInValueSet
 
run() - Method in class org.LexGrid.LexBIG.example.CheckForValueSetSubSet
 
run(String, String[]) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
 
run(String) - Method in class org.LexGrid.LexBIG.example.FindDescriptionForCode
 
run(String) - Method in class org.LexGrid.LexBIG.example.FindPropsAndAssocForCode
Process the provided code.
run(String, String) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodes
 
run(String) - Method in class org.LexGrid.LexBIG.example.FindRelatedCodesWithPropertyLinks
 
run(String, String) - Method in class org.LexGrid.LexBIG.example.FindRelatedNodesForTermAndAssoc
 
run(String) - Method in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI
Process the provided code.
run(String, String, int) - Method in class org.LexGrid.LexBIG.example.GetAllIncomingConceptsForAssociation
 
run(String, String) - Method in class org.LexGrid.LexBIG.example.GetConceptReferencesClosure
 
run() - Method in class org.LexGrid.LexBIG.example.GetResolvedValueSetData
 
run(int, String) - Method in class org.LexGrid.LexBIG.example.ListHierarchy
 
run(String, int) - Method in class org.LexGrid.LexBIG.example.ListHierarchyByCode
 
run(int, String) - Method in class org.LexGrid.LexBIG.example.ListHierarchyMetaBySource
 
run(String) - Method in class org.LexGrid.LexBIG.example.ListHierarchyPathToRoot
 
run(String) - Method in class org.LexGrid.LexBIG.example.MetaDataSearch
 
run(String) - Method in class org.LexGrid.LexBIG.example.MetaMatch
 
run(String[]) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
Primary entry point for the program.
run() - Method in class org.LexGrid.LexBIG.example.ResolveValueSet
 
run(String, float) - Method in class org.LexGrid.LexBIG.example.ScoreTerm
Runs the score algorithm for a specific term.
run(String) - Method in class org.LexGrid.LexBIG.example.SoundsLike
 
run(double) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView.AutoPanAction
 
run(double) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphViewFilter
 
run(double) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView.AutoPanAction
 
run(double) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphViewFilter
 
run() - Method in class org.LexGrid.LexBIG.gui.load.LoaderExtensionShell.ButtonUpdater
 
run() - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell.StatusMonitor
 
run() - Method in class org.LexGrid.LexBIG.Impl.helpers.LuceneWarmUpThread
 
run() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl.CleanUpThread
 
run() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader.DoConversion
 
run(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
run(String[]) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
Runs the import utility based on the provided arguments.
run(String[]) - Method in class org.LexGrid.util.file.CopyrightScrubber
Runs the import utility based on the provided arguments.
run(String[]) - Method in class org.lexgrid.valuesets.admin.IndexResolvedandAssertedValueSets
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.LoadAllDefinitionsToResolvedValueSet
 
run(String[]) - Method in class org.lexgrid.valuesets.admin.LoadAllValueSetDefinitionsInDirectory
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.LoadPickListDefinition
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.LoadResolvedValueSetDefinition
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.LoadValueSetDefinition
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.RemoveAllResolvedValueSets
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.RemoveAllValueSetDefinitions
 
run(String[]) - Method in class org.lexgrid.valuesets.admin.RemoveResolvedValueSet
Primary entry point for the program.
run(String[]) - Method in class org.lexgrid.valuesets.admin.RemoveValueSetDefinition
 
run(String[]) - Method in class org.lexgrid.valuesets.admin.RemoveVSResolvedFromCodingSchemes
Primary entry point for the program.
runPostProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in interface org.LexGrid.LexBIG.Extensions.Load.postprocessor.LoaderPostProcessor
Executes a Loader post process.
runPostProcess(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Run post process.
runPostProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.ApproxNumOfConceptsPostProcessor
 
runPostProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.HierarchyCheckingPostProcessor
 
runPostProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
 
runPostProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
 
runProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.AbstractProcessRunner
 
runProcess(AbsoluteCodingSchemeVersionReference, OntologyFormat) - Method in interface org.LexGrid.LexBIG.Impl.loaders.ProcessRunner
 
runReport(LexBIGService, CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.example.ProfileScheme
Initiates profiling of different code system attributes and displays a report for the caller.

S

sab - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
sab - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
SAB - Static variable in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
SAB_OPTION - Static variable in class org.lexgrid.loader.umls.MedRtUmlsBatchLoaderImpl
 
SAB_OPTION - Static variable in class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
SABString(String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
sabToCodeSystem_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SameAsCodingSchemeNameEntityNamespaceResolver - Class in org.lexgrid.loader.processor.support
The Class SameAsCodingSchemeNameEntityNamespaceResolver.
SameAsCodingSchemeNameEntityNamespaceResolver() - Constructor for class org.lexgrid.loader.processor.support.SameAsCodingSchemeNameEntityNamespaceResolver
 
SameSessionLoadandQueryTest - Class in org.lexevs.dao.index.operation
 
SameSessionLoadandQueryTest() - Constructor for class org.lexevs.dao.index.operation.SameSessionLoadandQueryTest
 
satui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
SATUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
SAUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
save(File) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.LG2OBO
Saves the Lexgrid EMF content in obo format to the outFileName
SAVED_BY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
sAVSTransformer - Variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetScoreDocIteratorWrapper
 
SAXPrintHandler - Class in org.LexGrid.LexBIG.Impl.helpers
Simple handler that prints all encountered errors and retains the most recent encountered error or fatal error.
SAXPrintHandler() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.SAXPrintHandler
Construct a new handler printing to System.out as target.
SCHEME - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
scheme - Variable in class org.lexgrid.lexevs.ndfrt.MapNDFRT2LexEVS
 
SCHEME_URI - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
schemeToHierNames_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SCOPE_BROAD - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
SCOPE_EXACT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
SCOPE_NARROW - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
SCOPE_NONE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
SCOPE_RELATED - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
score - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
score(String, List<String>, boolean, float) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
Returns a score providing a relative comparison of the given text against a set of keywords.
score(SortedSet, SortedSet) - Method in class org.LexGrid.LexBIG.example.ScoreTerm
Returns a score providing a relative comparison of the first set of words against the second.
ScoredIterator - Class in org.LexGrid.LexBIG.example
Used to wrap scored results for consumption as a standard ResolvedConceptReferenceIterator.
ScoredIterator(Collection<ScoredTerm>, int) - Constructor for class org.LexGrid.LexBIG.example.ScoredIterator
Construct from a map of ScoredTerms, ordered from high to low score.
ScoredIterator(ScoredTerm[]) - Constructor for class org.LexGrid.LexBIG.example.ScoredIterator
Construct from a pre-sorted array of ScoredTerms.
ScoreDocIteratoSerializationTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
ScoreDocIteratoSerializationTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocIteratoSerializationTest
 
ScoreDocTransformer - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
ScoreDocTransformer() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocTransformer
 
ScoreDocTransformerExecutor - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
ScoreDocTransformerExecutor() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocTransformerExecutor
 
ScoredTerm() - Constructor for class org.LexGrid.LexBIG.example.ScoreTerm.ScoredTerm
 
ScoreTerm - Class in org.LexGrid.LexBIG.example
Example showing a simple scoring algorithm that evaluates a provided term against available terms in a code system.
ScoreTerm() - Constructor for class org.LexGrid.LexBIG.example.ScoreTerm
 
ScoreTerm.ScoredTerm - Class in org.LexGrid.LexBIG.example
 
ScriptFactory - Class in org.lexevs.dao.database.setup.script
A factory for creating Script objects.
ScriptFactory() - Constructor for class org.lexevs.dao.database.setup.script.ScriptFactory
 
ScriptFactory.ScriptType - Enum in org.lexevs.dao.database.setup.script
The Enum ScriptType.
ScriptFactoryTest - Class in org.lexgrid.loader.setup
The Class ScriptFactoryTest.
ScriptFactoryTest() - Constructor for class org.lexgrid.loader.setup.ScriptFactoryTest
 
ScriptProducingLauncher - Class in org.lexevs.dao.database.operation.tools
 
ScriptProducingLauncher() - Constructor for class org.lexevs.dao.database.operation.tools.ScriptProducingLauncher
 
scroll(int) - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Skips 'n' items which are available via getNext() until a call to next(), returning self.
scroll(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
scroll(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
scroll(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImpl
 
scroll(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
scroll(int) - Method in interface org.LexGrid.LexBIG.Utility.Iterators.ResolvedConceptReferencesIterator
Return the next batch of resolved concept references.
scroll(int) - Method in class org.lexgrid.valuesets.sourceasserted.impl.AssertedValueSetResolvedConceptReferenceIterator
 
scrubHtmlFromText(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
SCUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
SDUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
search(Query) - Method in interface org.lexevs.dao.index.access.metadata.MetadataDao
 
search(Query) - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
search(Query, Filter, Collector) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
search(Query, Filter) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
search(Query, Filter, Collector) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
search(Query, Filter) - Method in interface org.lexevs.dao.index.lucenesupport.LuceneIndexTemplate
 
search(Query, Filter, Collector) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
search(Query, Filter) - Method in class org.lexevs.dao.index.lucenesupport.MetaDataIndexTemplate
 
search(Query, Filter) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
search(Query, Filter, Collector) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
search(Query) - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
search(Query) - Method in interface org.lexevs.dao.index.service.metadata.MetadataIndexService
 
search(LexBIGService, String, CodingSchemeVersionOrTag, String, LocalNameList) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
 
search(String, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SearchExtension
Search based on a given text string over all coding schemes.
search(String, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SearchExtension
Search based on a given text string over given coding schemes.
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SearchExtension
Search based on a given text string over given coding schemes, excluding the listed.
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SearchExtension
Search based on a given text string over given coding schemes, excluding the listed.
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SearchExtension
Search based on a given text string over given coding schemes, excluding the listed.
search(String, CodingSchemeReference, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SourceAssertedValueSetSearchExtension
Search based on a given text string over a coding schemes source asserted value sets.
search(String, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SourceAssertedValueSetSearchExtension
Search that defaults to the only or first source asserted value set in the system.
search(String, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SourceAssertedValueSetSearchExtension
Search based on a given text string over given resolved value sets.
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SourceAssertedValueSetSearchExtension
Search based on a given text string over given source asserted and resolved value sets.
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean, boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.SourceAssertedValueSetSearchExtension
Search based on a given text string over given source asserted and resolved value sets. .
Search - Interface in org.LexGrid.LexBIG.Extensions.Query
 
search(String, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(String, CodingSchemeReference, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(String, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(String, Set<CodingSchemeReference>, Set<CodingSchemeReference>, SearchExtension.MatchAlgorithm, boolean, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
search(Name, String, SearchControls) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(String, String, SearchControls) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(String, Attributes, String[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(String, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(Name, String, Object[], SearchControls) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(Name, Attributes, String[]) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(Name, Attributes) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
search(String, String, Object[], SearchControls) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
searchAllAscendentsInTransitiveClosureBaseline() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllAscendentsInTransitiveClosureBaselineNodeSetQuery() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllAscendentsInTransitiveClosureDomainMildlySickPatientText() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllAscendentsInTransitiveClosureDomainMildlySickPersonRootText() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllAscendentsInTransitiveClosureDomainVerySickCancerPatientSourceSpecific() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllAscendentsInTransitiveClosureDomainVerySickCancerPatientSourceSpecificExactMatch() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureBaseline() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureDomainMildlySickPatient() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureDomainMildlySickPatientContainsPreferred() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureDomainMildlySickPatientSourceSpecificPreferred() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureDomainVerySickPatient() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureDomainVerySickPatientSourceSpecific() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureScaledCodeList() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAllDecendentsInTransitiveClosureScaledCodeListExactMatch() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
searchAscendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, List<String>, String, String, String, CodedNodeSet.SearchDesignationOption, LocalNameList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
searchAscendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, List<String>, String, String, String, CodedNodeSet.SearchDesignationOption, LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
SearchDao - Interface in org.lexevs.dao.index.access.search
The Interface SearchDao.
searchDescendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, List<String>, String, String, String, CodedNodeSet.SearchDesignationOption, LocalNameList) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
 
searchDescendentsInTransitiveClosure(String, CodingSchemeVersionOrTag, List<String>, String, String, String, CodedNodeSet.SearchDesignationOption, LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
 
SearchDesignationOption - Class in org.LexGrid.LexBIG.DataModel.enums
Options for filtering for pre-determined search designations.
SearchDesignationOption() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.SearchDesignationOption
 
searchDesignationOption - Variable in class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
SearchDesignationOptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.enums.descriptors
Class SearchDesignationOptionDescriptor.
SearchDesignationOptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.enums.descriptors.SearchDesignationOptionDescriptor
 
SearchExtension - Interface in org.LexGrid.LexBIG.Extensions.Generic
A simplified Search Extension.
SearchExtension.MatchAlgorithm - Enum in org.LexGrid.LexBIG.Extensions.Generic
 
SearchExtensionImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SearchExtensionImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
SearchExtensionImplTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
SearchExtensionImplTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
SearchExtensionRankTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
SearchExtensionRankTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionRankTest
 
SearchIndexAwareEntityIndexService - Class in org.lexevs.dao.index.service.entity
 
SearchIndexAwareEntityIndexService() - Constructor for class org.lexevs.dao.index.service.entity.SearchIndexAwareEntityIndexService
 
SearchIndexService - Interface in org.lexevs.dao.index.service.search
The Interface EntityIndexService.
SearchScoreDocIterator - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
The Class SearchScoreDocIterator.
SearchScoreDocIterator(Set<AbsoluteCodingSchemeVersionReference>, List<ScoreDoc>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
SearchScoreDocIterator(Set<AbsoluteCodingSchemeVersionReference>, List<ScoreDoc>, ScoreDocTransformer) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
SearchScoreDocIteratorTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SearchScoreDocIteratorTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
SELF_REFERENCING_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SELF_REFERENCING_QUALIFIER_TRUE_VALUE - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SelfReferencingAssocQualResolver - Class in org.lexgrid.loader.meta.processor.support
The Class SelfReferencingAssocQualResolver.
SelfReferencingAssocQualResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolver
 
SelfReferencingAssocQualResolverTest - Class in org.lexgrid.loader.meta.processor.support
The Class SelfReferencingAssocQualResolverTest.
SelfReferencingAssocQualResolverTest() - Constructor for class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolverTest
 
SEMANTIC_TYPES_PROPERTY - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The SEMANTI c_ type s_ property.
SEMNET_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
SemNetFiles - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Format interface for converting RRF files to SQL.
SemNetFiles() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
SemNetFiles(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
SemNetLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
This loader loads a series of coding schemes to a LexBIG service according to a mapping of HL7 RIM database elements to LexBIG/LexGrid.
SemNetLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.SemNetLoaderImpl
 
SemNetLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences
Class SemNetLoaderPreferences.
SemNetLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.SemNetLoaderPreferences
 
SemNetLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors
Class SemNetLoaderPreferencesDescriptor.
SemNetLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.descriptors.SemNetLoaderPreferencesDescriptor
 
SemNetPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load SemNet loader preferences from an XML file
SemNetPreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.SemNetPreferenceLoader
Constructor for creating an SemNetPreferenceLoader.
SemNetPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.SemNetPreferenceLoader
Constructor for creating an SemNetPreferenceLoader.
SemNetToLg - Class in edu.mayo.informatics.lexgrid.convert.directConversions.semnet
Reads SemanticNet -> EMF The UMLS semantic network files provide an indication of both stated and inherited relationships.
SemNetToLg(URI, Integer, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
send(String, int, String, String, String, String) - Method in class org.lexevs.logging.SimpleEmailAppender
Sends an email.
SEP - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
SequenceBasedBigIntKeyIncrementer - Class in org.lexevs.dao.database.key.incrementer
The Class SequenceBasedBigIntKeyIncrementer.
SequenceBasedBigIntKeyIncrementer() - Constructor for class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
 
SequentialMappedParameterBean - Class in org.lexevs.dao.database.ibatis.parameter
 
SequentialMappedParameterBean(Object...) - Constructor for class org.lexevs.dao.database.ibatis.parameter.SequentialMappedParameterBean
 
SerializableRegexCapabilities - Class in org.lexevs.dao.indexer.lucene.query
The Class SerializableRegexCapabilities.
SerializableRegexCapabilities() - Constructor for class org.lexevs.dao.indexer.lucene.query.SerializableRegexCapabilities
Instantiates a new serializable regex capabilities.
SerializableRegexCapabilitiesTest - Class in org.lexevs.dao.indexer.lucene.query
The Class SerializableRegexCapabilitiesTest.
SerializableRegexCapabilitiesTest() - Constructor for class org.lexevs.dao.indexer.lucene.query.SerializableRegexCapabilitiesTest
 
SerializableRegexQuery - Class in org.lexevs.dao.indexer.lucene.query
The Class SerializableRegexQuery.
SerializableRegexQuery(Term) - Constructor for class org.lexevs.dao.indexer.lucene.query.SerializableRegexQuery
Instantiates a new serializable regex query.
SerializableRegexQueryTest - Class in org.lexevs.dao.indexer.lucene.query
The Class SerializableRegexQueryTest.
SerializableRegexQueryTest() - Constructor for class org.lexevs.dao.indexer.lucene.query.SerializableRegexQueryTest
 
server - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
server - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The server.
SERVICE_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
serviceDN - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
ServiceManagerTest - Class in org.LexGrid.LexBIG.Impl
JUnit Tests for the Service Manager API
ServiceManagerTest() - Constructor for class org.LexGrid.LexBIG.Impl.ServiceManagerTest
 
ServiceUtility - Class in org.LexGrid.LexBIG.Utility
Utility ServiceUtility Class with various helper methods.
ServiceUtility() - Constructor for class org.LexGrid.LexBIG.Utility.ServiceUtility
 
ServiceUtilityTest - Class in org.LexGrid.LexBIG.Utility
 
ServiceUtilityTest() - Constructor for class org.LexGrid.LexBIG.Utility.ServiceUtilityTest
 
set_assocToChildMap(Map<String, List<LexEVSTreeItem>>) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
set_auis(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
set_code(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
set_expandable(boolean) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
set_id(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
set_text(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
setAbbreviation(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
setAbsoluteCodingSchemeVersionReference(int, AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
setAbsoluteCodingSchemeVersionReference(AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList
 
setAction(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setActivationDate(Timestamp) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the activation date.
setActive(boolean) - Method in interface org.lexevs.dao.database.service.event.DatabaseServiceEventListener
Sets the active.
setActive(boolean) - Method in class org.lexevs.dao.database.service.listener.DefaultServiceEventListener
 
setActiveOptionName(String) - Method in class org.LexGrid.LexBIG.DataModel.enums.ActiveOption
Sets the value of field 'activeOptionName'.
setActualTableSetPrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
 
setActualTableSetPrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.SequentialMappedParameterBean
 
setAllowedFileExtensions(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.options.URIOption
Sets the allowed file extensions.
setAltIds(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setAnalyzer(Analyzer) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setAnalyzer(Analyzer) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
setAndRetrieveCodingSchemes() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
setAndRetrievePickListDefinitions() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
setAndRetrieveValueSetDefinitions() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridElementProcessor
 
setAnonymous(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setAnonymous(boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets if the entity is anonymous
setAnonymousOption(CodedNodeSet.AnonymousOption) - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToAnonymous
 
setAnonymousStatus(boolean) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setAntiSymmetric(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setAnyObject(int, Object) - Method in class org.LexGrid.builtins.TsAnyType
 
setAnyObject(Object[]) - Method in class org.LexGrid.builtins.TsAnyType
 
setAnyObject(List<Object>) - Method in class org.LexGrid.builtins.TsAnyType
Sets the value of '_anyObject' by copying the given Vector.
setAnyObject(int, Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
setAnyObject(Object[]) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
 
setAnyObjectAsReference(List<Object>) - Method in class org.LexGrid.builtins.TsAnyType
Deprecated. 
setAPILoggingEnabled(boolean) - Method in class org.lexevs.logging.Logger
Sets the aPI logging enabled.
setApplicationContext(ApplicationContext) - Method in class org.lexevs.locator.LexEvsServiceLocator
 
setApplicationContext(ApplicationContext) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
setApplicationContext(ApplicationContext) - Method in class org.lexgrid.loader.writer.classifier.WriterClassifier
 
setApplicationContextCallback(LexEvsServiceLocator.ApplicationContextCallback) - Static method in class org.lexevs.locator.LexEvsServiceLocator
 
setApplicationListener(LazyLoadMetaData) - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
setApproxNumConcepts(Long) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'approxNumConcepts'.
setArray(int, Array) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setAscending(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
Sets the value of field 'ascending'.
setAsciiStream(int, InputStream, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setAsciiStream(int, InputStream) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setAsciiStream(int, InputStream, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setAssemblyRule(String) - Method in class org.LexGrid.naming.SupportedSource
Sets the value of field 'assemblyRule'.
setAssertedValueSetCodingSchemeName(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setAssertedValueSetCodingSchemeTag(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setAssertedValueSetCodingSchemeURI(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setAssertedValueSetConfiguration(AssertedValueSetParameters) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
 
setAssertedValueSetDaos(List<SourceAssertedValueSetDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setAssertedValueSetHierarchyVSRelation(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setAssertedValueSetIndexService(SourceAssertedValueSetSearchIndexService) - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
setAssertedValueSetService(AssertedValueSetService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
setAssertedValueSetVersion(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setAssnQualsAndUsageContext(List<InsertAssociationQualificationOrUsageContextBean>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
 
setAssnQualsAndUsageContext(List<InsertAssociationQualificationOrUsageContextBean>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
 
setAssoc(int, AssociationEntity) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
setAssoc(AssociationEntity[]) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
setAssoc(List<AssociationEntity>) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Sets the value of '_assocList' by copying the given Vector.
setAssocAsReference(List<AssociationEntity>) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Deprecated. 
setAssocDataService(AssociationDataService) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Sets the assoc data service.
setAssociatedConcept(int, AssociatedConcept) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
setAssociatedConcept(AssociatedConcept[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList
 
setAssociatedConcept(AssociatedConcept[]) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
setAssociatedConcept(int, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableAssociatedConceptList
 
setAssociatedConcepts(AssociatedConceptList) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'associatedConcepts'.
setAssociatedData(int, AssociatedData) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
setAssociatedData(AssociatedData[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList
 
setAssociatedData(AssociatedDataList) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'associatedData'.
setAssociatedURL(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'associatedURL'.
setAssociation(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
setAssociation(int, Association) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
setAssociation(Association[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.AssociationList
 
setAssociationDao(AssociationDao) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
setAssociationDaos(List<AssociationDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the association daos.
setAssociationData(AssociationData) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Sets the association data.
setAssociationDataDao(AssociationDataDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
setAssociationDataDaos(List<AssociationDataDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setAssociationDataService(AssociationDataService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the association data service.
setAssociationDataText(Text) - Method in class org.LexGrid.relations.AssociationData
Sets the value of field 'associationDataText'.
setAssociationDefinitions(CsmfAssociationDefinition) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'associationDefinitions'.
setAssociationEntity(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setAssociationEntity(AssociationEntity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setAssociationEntity(AssociationEntity) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationEntityBean
 
setAssociationEntity(int, AssociationEntity) - Method in class org.LexGrid.concepts.Entities
 
setAssociationEntity(AssociationEntity[]) - Method in class org.LexGrid.concepts.Entities
 
setAssociationEntity(List<AssociationEntity>) - Method in class org.LexGrid.concepts.Entities
Sets the value of '_associationEntityList' by copying the given Vector.
setAssociationEntityAsReference(List<AssociationEntity>) - Method in class org.LexGrid.concepts.Entities
Deprecated. 
setAssociationEntryStates(AssociationSource[], EntryState) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
setAssociationInstanceId(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setAssociationInstanceId(String) - Method in class org.LexGrid.relations.AssociatableElement
Sets the value of field 'associationInstanceId'.
setAssociationInstanceIdResolver(AssociationInstanceIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
setAssociationInstanceIdResolver(AssociationInstanceIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setAssociationInstanceIdResolver(AssociationInstanceIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
setAssociationInstanceIdResolver(AssociationInstanceIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
setAssociationInstanceIdResolver(AssociationInstanceIdResolver<I>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setAssociationInstanceKeyResolver(AssociationInstanceKeyResolver) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
 
setAssociationInstancePageSize(int) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
setAssociationInstancePageSize(int) - Method in interface edu.mayo.informatics.lexgrid.convert.inserter.PagingCodingSchemeInserter
Sets the association instance page size.
setAssociationName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setAssociationName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setAssociationName(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setAssociationName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'associationName'.
setAssociationName(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Sets the association name.
setAssociationName(String) - Method in class org.LexGrid.relations.AssociationPredicate
Sets the value of field 'associationName'.
setAssociationNames(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
 
setAssociationNames(List<String>) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the association names.
setAssociationNames(List<String>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the association names.
setAssociationNames(int, String) - Method in class org.LexGrid.naming.SupportedHierarchy
 
setAssociationNames(String[]) - Method in class org.LexGrid.naming.SupportedHierarchy
 
setAssociationNames(List<String>) - Method in class org.LexGrid.naming.SupportedHierarchy
Sets the value of '_associationNamesList' by copying the given Vector.
setAssociationNamesAsReference(List<String>) - Method in class org.LexGrid.naming.SupportedHierarchy
Deprecated. 
setAssociationPrediate(AssociationPredicate) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setAssociationPredicate(AssociationPredicate) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setAssociationPredicate(AssociationPredicate) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationPredicateBean
Sets the association predicate.
setAssociationPredicate(int, AssociationPredicate) - Method in class org.LexGrid.relations.Relations
 
setAssociationPredicate(AssociationPredicate[]) - Method in class org.LexGrid.relations.Relations
 
setAssociationPredicate(List<AssociationPredicate>) - Method in class org.LexGrid.relations.Relations
Sets the value of '_associationPredicateList' by copying the given Vector.
setAssociationPredicateAsReference(List<AssociationPredicate>) - Method in class org.LexGrid.relations.Relations
Deprecated. 
setAssociationPredicateId(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets the association predicate id.
setAssociationPredicateId(String) - Method in class org.lexevs.dao.database.access.association.model.Triple
 
setAssociationPredicateKeyResolver(AssociationPredicateKeyResolver) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setAssociationPredicateKeyResolver(AssociationPredicateKeyResolver) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setAssociationPredicateName(String) - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Sets the association predicate name.
setAssociationPredicateUid(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsBean
 
setAssociationPredicateUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Sets the association predicate id.
setAssociationPredicateUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Sets the association predicate id.
setAssociationPredicateUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Sets the association predicate id.
setAssociationPredicateUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the association predicate id.
setAssociationQualification(List<?>) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setAssociationQualification(NameAndValue) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.model.EntityReferencingAssociatedConcept
 
setAssociationQualification(int, AssociationQualification) - Method in class org.LexGrid.relations.AssociatableElement
 
setAssociationQualification(AssociationQualification[]) - Method in class org.LexGrid.relations.AssociatableElement
 
setAssociationQualification(List<AssociationQualification>) - Method in class org.LexGrid.relations.AssociatableElement
Sets the value of '_associationQualificationList' by copying the given Vector.
setAssociationQualificationAsReference(List<AssociationQualification>) - Method in class org.LexGrid.relations.AssociatableElement
Deprecated. 
setAssociationQualifier(AssociationQualification) - Method in class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Sets the association qualifier.
setAssociationQualifier(String) - Method in class org.LexGrid.relations.AssociationQualification
Sets the value of field 'associationQualifier'.
setAssociationQualifiers(List<GraphQuery.QualifierNameValuePair>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setAssociationQualifiers(List<GraphQuery.QualifierNameValuePair>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setAssociationQualifiers(NameAndValueList) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
Sets the value of field 'associationQualifiers'.
setAssociationReference(ConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'associationReference'.
setAssociations(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setAssociations(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setAssociationService(AssociationService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the association service.
setAssociationSource(AssociationSource) - Method in class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Sets the association source.
setAssociationSource(AssociationSource) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationDataBean
Sets the association source.
setAssociationSource(AssociationSource) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Sets the association source.
setAssociationSource(AssociationSource) - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Sets the association source.
setAssociationStatus(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String, String, String, String, String, String, String, boolean) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
setAssociationStatus(Revision, EntryState, AbsoluteCodingSchemeVersionReference, String, String, String, String, String, String, String, String, boolean) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexEVSAuthoringService
Updates the status of an association allowing it to be filtered depending status and isActive parameters.
setAssociationTarget(AssociationTarget) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationTargetBean
Sets the association target.
setAssociationTargetDao(AssociationTargetDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
setAssociationTargetDaos(List<AssociationTargetDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setAssociationTargetService(AssociationTargetService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the association target service.
setAssocTargetService(AssociationTargetService) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Sets the assoc target service.
setAsync(boolean) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Sets the async.
setAtn(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setAtn(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setAtn(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setAtnl(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setAttributeId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the attribute id.
setAttributeType(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Sets the attribute type.
setAttributeType(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the attribute type.
setAttributeType(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setAttributeValue(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Sets the attribute value.
setAttributeValue(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the attribute value.
setAttributeValue(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setAtui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setAtui(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setAtui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setAtui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setAtv(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setAtv(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setAtv(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setAui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setAui(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setAui(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setAui(MrrelAuiPropertyIdResolver.Aui) - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver
 
setAui1(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setAui2(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setAuiToReturn(MrrelAuiResolver.AuiType) - Method in class org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver
 
setAuthoringService(AuthoringService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the authoring service.
setAutoCommit(boolean) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setBasedOnRelease(String) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'basedOnRelease'.
setBaseMetaDataLoader(BaseMetaDataLoader) - Method in class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
setBaseMetaDataLoader(BaseMetaDataLoader) - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
setBaseRevision(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the base revision.
setBatch(List<AssociationSourceBatchInsertItem>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
Sets the batch.
setBatch(List<Entity>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
Sets the batch.
setBatchSize(int) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Sets the batch size.
setBatchSize(int) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
setBean(T) - Method in class org.lexevs.system.constants.IndividualVariableFactory
Sets the bean.
setBigDecimal(int, BigDecimal) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBinaryStream(int, InputStream, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBinaryStream(int, InputStream) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBinaryStream(int, InputStream, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBlob(int, Blob) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBlob(int, InputStream) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBlob(int, InputStream, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBlockJoinSearcher(ToParentBlockJoinIndexSearcher) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
setBoolean(int, boolean) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBooleanOnPreparedStatment(PreparedStatement, int, Boolean) - Static method in class org.LexGrid.util.sql.DBUtility
simplified call to setBooleanOnPreparedStatement.
setBooleanOnPreparedStatment(PreparedStatement, int, Boolean, boolean) - Static method in class org.LexGrid.util.sql.DBUtility
simplified call to setBooleanOnPreparedStatement.
setBooleanOnPreparedStatment(PreparedStatement, int, Boolean, String) - Static method in class org.LexGrid.util.sql.DBUtility
simplified call to setBooleanOnPreparedStatement.
setBooleanOnPreparedStatment(PreparedStatement, int, Boolean, boolean, String) - Static method in class org.LexGrid.util.sql.DBUtility
Sets booleans properly in the LexGrid world.
setBooleanOptions(List<Option<Boolean>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
Sets the boolean options.
setBreakAndIndent(String) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Assigns the text used to introduce line break and indentation as set for the current thread.
setBreakAndIndent(String) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Assigns the text used to introduce line break and indentation as set for the current thread.
setBufferSize(int) - Method in class org.lexevs.logging.SimpleEmailAppender
Sets the buffer size.
setByte(int, byte) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setBytes(int, byte[]) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCache(Cache) - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptor
Sets the cache.
setCacheManager(CacheManager) - Method in class org.lexevs.cache.CacheRegistry
 
setCacheRegistry(CacheRegistry) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
setCacheSize(int) - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Sets the cache size.
setCacheWrappingFactory(CacheWrappingFactory) - Method in class org.lexevs.locator.LexEvsServiceLocator
 
setCachingMessageDirectorIF(CachingMessageDirectorIF) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setCatalog(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setCenc(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setCfr(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setChangeAgent(String) - Method in class org.LexGrid.versions.Revision
Sets the value of field 'changeAgent'.
setChanged(T) - Method in class org.lexevs.dao.database.service.event.revision.ReviseEvent
Sets the changed.
setChangedCodingSchemeEntry(CodingScheme) - Method in class org.LexGrid.versions.ChangedEntry
Sets the value of field 'changedCodingSchemeEntry'.
setChangedEntry(int, ChangedEntry) - Method in class org.LexGrid.versions.Revision
 
setChangedEntry(ChangedEntry[]) - Method in class org.LexGrid.versions.Revision
 
setChangedEntry(List<ChangedEntry>) - Method in class org.LexGrid.versions.Revision
Sets the value of '_changedEntryList' by copying the given Vector.
setChangedEntryAsReference(List<ChangedEntry>) - Method in class org.LexGrid.versions.Revision
Deprecated. 
setChangeDocumentation(Text) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'changeDocumentation'.
setChangedPickListDefinitionEntry(PickListDefinition) - Method in class org.LexGrid.versions.ChangedEntry
Sets the value of field 'changedPickListDefinitionEntry'.
setChangedValueSetDefinitionEntry(ValueSetDefinition) - Method in class org.LexGrid.versions.ChangedEntry
Sets the value of field 'changedValueSetDefinitionEntry'.
setChangeInstructions(Text) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'changeInstructions'.
setChangeInstructions(Text) - Method in class org.LexGrid.versions.Revision
Sets the value of field 'changeInstructions'.
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceView
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceView
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierView
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceView
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
setChangesMade(boolean) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceView
 
setChangeType(ChangeType) - Method in class org.LexGrid.versions.EntryState
Sets the value of field 'changeType'.
setCharacterStream(int, Reader, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCharacterStream(int, Reader) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCharacterStream(int, Reader, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCheckTableName(String) - Method in class org.lexevs.dao.database.setup.schemacheck.CountBasedLexGridSchemaCheck
Sets the check table name.
setChildCount(int) - Method in class org.lexevs.dao.database.service.codednodegraph.model.CountConceptReference
Sets the child count.
setChildIterator(ChildTreeNodeIterator, boolean) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Sets the child iterator.
setChildIterator(ChildTreeNodeIterator, boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets the child iterator.
setChildren_nodes(List<OntologyNode>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
setClamlDefaultLang(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setClamlPackageName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setClassAssociationQualifier(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setClassLoader(ClassLoader) - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
Sets the class loader.
setClientInfo(Properties) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setClientInfo(String, String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setClob(int, Clob) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setClob(int, Reader) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setClob(int, Reader, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCng(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
setCng(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
setCns(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridExport
 
setCns(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.exporters.OwlRdfExporterImpl
 
setCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
setCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setCode(String) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
Sets the code.
setCode(String) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Sets the code.
setCode(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Sets the value of field 'code'.
setCode(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets the code.
setCode(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setCode(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Sets the code.
setCode(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setCode(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setCode(String) - Method in class org.lexgrid.loader.rrf.staging.model.CodeSabPair
Sets the code.
setCode(String) - Method in class org.lexgrid.loader.wrappers.CodeCodingSchemePair
Sets the code.
setCodedNodeGraphDaos(List<CodedNodeGraphDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setCodedNodeGraphService(CodedNodeGraphService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the coded node graph service.
setCodedNodeReference(int, CodedNodeReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
setCodedNodeReference(CodedNodeReference[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList
 
setCodedNodeSet(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
setCodedNodeSet(CodedNodeSet) - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetCodedNodeSet
 
setCodeHolderFactory(CodeHolderFactory) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
setCodeMap(Map<String, LexEvsTreeNode>) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the code map.
setCodeMap(Map<String, LexEvsTreeNode>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the code map.
setCodeNamespace(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Sets the value of field 'codeNamespace'.
setCodesShown(boolean) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
Set whether to show the concept codes with the node names.
setCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
setCodeSystems(List<MifCodeSystem>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setCodeSystemVersions(List<MifCodeSystemVersion>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
Sets the coding scheme.
setCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeInsertErrorEvent
Sets the coding scheme.
setCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.event.codingscheme.PostCodingSchemeInsertEvent
Sets the coding scheme.
setCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.event.codingscheme.PreCodingSchemeInsertEvent
Sets the coding scheme.
setCodingScheme(String) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the coding scheme.
setCodingScheme(int, CodingScheme) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
setCodingScheme(CodingScheme[]) - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
setCodingScheme(List<CodingScheme>) - Method in class org.LexGrid.codingSchemes.CodingSchemes
Sets the value of '_codingSchemeList' by copying the given Vector.
setCodingScheme(String) - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
setCodingScheme(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the coding scheme.
setCodingScheme(CsmfCodingSchemeName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'codingScheme'.
setCodingScheme(String) - Method in class org.lexgrid.loader.wrappers.CodeCodingSchemePair
Sets the coding scheme.
setCodingScheme(String) - Method in class org.LexGrid.naming.SupportedAssociation
Sets the value of field 'codingScheme'.
setCodingScheme(String) - Method in class org.LexGrid.valueSets.CodingSchemeReference
Sets the value of field 'codingScheme'.
setCodingScheme(String) - Method in class org.LexGrid.valueSets.PropertyReference
Sets the value of field 'codingScheme'.
setCodingSchemeAsReference(List<CodingScheme>) - Method in class org.LexGrid.codingSchemes.CodingSchemes
Deprecated. 
setCodingSchemeDao(CodingSchemeDao) - Method in class org.lexevs.dao.database.utility.CodingSchemeUriVersionToUUID
Sets the coding scheme dao.
setCodingSchemeDaos(List<CodingSchemeDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the coding scheme daos.
setCodingSchemeDescription(EntityDescription) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Sets the value of field 'codingSchemeDescription'.
setCodingSchemeFilterMap(Map<String, Filter>) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setCodingSchemeHistoryXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setCodingSchemeId(String) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.AssociationSourceBatchInsertError.AssociationSourceBatchInsertErrorItem
Sets the coding scheme id.
setCodingSchemeId(String) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
Sets the coding scheme id.
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.dao.template.MedRtCachingSupportedAttributeTemplate
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.listener.CleanupListener
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.processor.CodingSchemeIdAwareProcessor
Sets the coding scheme name setter.
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.processor.support.SameAsCodingSchemeNameEntityNamespaceResolver
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.rrf.processor.support.AbstractRrfRelationResolver
Sets the coding scheme name setter.
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
Sets the coding scheme name setter.
setCodingSchemeIdSetter(CodingSchemeIdSetter) - Method in class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
setCodingSchemeManifest(CodingSchemeManifest) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.ReadImpl
 
setCodingSchemeManifest(CodingSchemeManifest) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
setCodingSchemeManifest(CodingSchemeManifest) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Set the CodingSchemeManifest that would be used to modify the ontology content.
setCodingSchemeManifest(CodingSchemeManifest) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Set the CodingSchemeManifest that would be used to modify the ontology content.
setCodingSchemeManifest(CodingSchemeManifest) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setCodingSchemeManifest(CodingSchemeManifest) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setCodingSchemeManifest(CodingSchemeManifest) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setCodingSchemeManifestURI(URI) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Set the URI of the codingSchemeManifest that would be used to modify the ontology content.
setCodingSchemeManifestURI(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Set the URI of the codingSchemeManifest that would be used to modify the ontology content.
setCodingSchemeManifestURI(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setCodingSchemeManifestURI(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setCodingSchemeManifestURI(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setCodingSchemeName(String) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setCodingSchemeName(String) - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Sets the coding scheme name.
setCodingSchemeName(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'codingSchemeName'.
setCodingSchemeName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
Sets the value of field 'codingSchemeName'.
setCodingSchemeProperties(Properties) - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
Sets the coding scheme properties.
setCodingSchemeProperties(Properties) - Method in class org.lexgrid.loader.meta.tasklet.MetaCodingSchemeLoadingTasklet
Sets the coding scheme properties.
setCodingSchemeReference(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setCodingSchemeReference(CodingSchemeReference) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'codingSchemeReference'.
setCodingSchemeReferences(AbsoluteCodingSchemeVersionReference[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setCodingSchemeRendering(int, CodingSchemeRendering) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
setCodingSchemeRendering(CodingSchemeRendering[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList
 
setCodingSchemes(CodingScheme[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
setCodingSchemes(CodingScheme[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setCodingSchemes(ConcurrentMetaData) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setCodingSchemes(CodingSchemes) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'codingSchemes'.
setCodingSchemeService(CodingSchemeService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the coding scheme service.
setCodingSchemeService(CodingSchemeService) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Sets the coding scheme service.
setCodingSchemeSummary(int, CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
setCodingSchemeSummary(CodingSchemeSummary[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList
 
setCodingSchemeSummary(CodingSchemeSummary) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Sets the value of field 'codingSchemeSummary'.
setCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateRelationsBean
Sets the coding scheme id.
setCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Sets the coding scheme id.
setCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Sets the coding scheme id.
setCodingSchemeUId(String) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
Sets the coding scheme id.
setCodingSchemeUId(String) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Sets the coding scheme u id.
setCodingSchemeUri(String) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.event.revision.EntityReviseEvent
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId
Sets the coding scheme uri.
setCodingSchemeUri(String) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setCodingSchemeUri(String) - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Sets the coding scheme uri.
setCodingSchemeURI(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'codingSchemeURI'.
setCodingSchemeURI(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Sets the value of field 'codingSchemeURI'.
setCodingSchemeURI(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Sets the value of field 'codingSchemeURI'.
setCodingSchemeURI(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'codingSchemeURI'.
setCodingSchemeUri(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Sets the coding scheme uri.
setCodingSchemeURI(CsmfCodingSchemeURI) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'codingSchemeURI'.
setCodingSchemeURN(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference
Sets the value of field 'codingSchemeURN'.
setCodingSchemeVersion(String) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.error.EntityBatchInsertError.EntityBatchInsertErrorItem
 
setCodingSchemeVersion(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Sets the coding scheme version.
setCodingSchemeVersion(String) - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Sets the coding scheme version.
setCodingSchemeVersion(String) - Method in class org.lexevs.dao.database.service.event.revision.EntityReviseEvent
Sets the coding scheme version.
setCodingSchemeVersion(String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId
Sets the coding scheme version.
setCodingSchemeVersion(String) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setCodingSchemeVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference
Sets the value of field 'codingSchemeVersion'.
setCodingSchemeVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Sets the value of field 'codingSchemeVersion'.
setCodingSchemeVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'codingSchemeVersion'.
setCodingSchemeVersion(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
setCodingSchemeVersionRefList(AbsoluteCodingSchemeVersionReferenceList) - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetCodedNodeSet
 
setCodingSchemeVersionRefList(AbsoluteCodingSchemeVersionReferenceList) - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetDefinition
 
setCodingSchemeXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setComment(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setComment(int, Comment) - Method in class org.LexGrid.concepts.Entity
 
setComment(Comment[]) - Method in class org.LexGrid.concepts.Entity
 
setComment(List<Comment>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_commentList' by copying the given Vector.
setCommentAsReference(List<Comment>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setCommonXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setCompleteSet(Boolean) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'completeSet'.
setComplexProps_isDbxRefRepForm(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setComplexProps_isDbxRefRepForm(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setComplexProps_isDbxRefSource(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setComplexProps_isDbxRefSource(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setCompositeGroupComparator(CompositeGroupComparator<I1, I2>) - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
setConceptCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
setConceptCode(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.ConceptReference
Sets the value of field 'conceptCode'.
setConceptcode(String) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'conceptcode'.
setConceptCodes(List<MifConceptCode>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setConceptDC(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setConceptDomain(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'conceptDomain'.
setConceptName(String) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'conceptName'.
setConceptProperties(List<MifConceptProperty>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setConceptReference(int, ConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
setConceptReference(ConceptReference[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList
 
setConceptReferences(List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCountConceptReferenceBean
 
setConceptRelationships(List<MifConceptRelationship>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setConcepts(List<MifConcept>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.lucenesupport.MultiReaderFactory
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
setConcurrentMetaData(ConcurrentMetaData) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
setConnectionManager(LexEvsDatabaseOperations) - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
setConsider(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setContainerName(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'containerName'.
setContainingRevision(String) - Method in class org.LexGrid.versions.EntryState
Sets the value of field 'containingRevision'.
setContent(String) - Method in class org.LexGrid.builtins.TsAnyType
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.commonTypes.EntityDescription
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.commonTypes.Source
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.commonTypes.Text
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfFormalName
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfLocalName
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfSource
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.LexOnt.CsmfVersion
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedAssociation
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedAssociationQualifier
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedCodingScheme
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedConceptDomain
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedContainerName
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedContext
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedDataType
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedEntityType
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedHierarchy
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedLanguage
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedNamespace
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedProperty
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedPropertyLink
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedPropertyQualifier
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedPropertyType
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedRepresentationalForm
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedSortOrder
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedSource
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedSourceRole
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.SupportedStatus
Sets the value of field 'content'.
setContent(String) - Method in class org.LexGrid.naming.URIMap
Sets the value of field 'content'.
setContext(int, Object) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
setContext(Object[]) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
 
setCopyright(Text) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'copyright'.
setCopyright(CsmfText) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'copyright'.
setCreateConceptForObjectProp(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'createConceptForObjectProp'.
setCreated_by(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setCreateScript(Resource) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Sets the creates the script.
setCreation_date(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setCreationScriptPrefix(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Sets the creation script prefix.
setCsCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setCsCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
setCsCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
setCsCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setCsMultiAttribList(List<InsertOrUpdateCodingSchemeMultiAttribBean>) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
 
setCsVersionList(AbsoluteCodingSchemeVersionReferenceList) - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
setCsVersionTag(String) - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
setCsvReleaseDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setCsvReleaseDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
setCsvReleaseDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
setCsvReleaseDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setCui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setCui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setCui(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setCui(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setCui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setCui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setCui1(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setCui2(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setCuiNumber(int) - Method in class org.lexgrid.loader.rrf.reader.support.MrconsoCuiNumberBasedSkipPolicy
Sets the cui number.
setCuiNumber(int) - Method in class org.lexgrid.loader.rrf.reader.support.MrdefCuiNumberBasedSkipPolicy
Sets the cui number.
setCuiNumber(int) - Method in class org.lexgrid.loader.rrf.reader.support.MrrelCuiNumberBasedSkipPolicy
Sets the cui number.
setCuiNumber(int) - Method in class org.lexgrid.loader.rrf.reader.support.MrsatCuiNumberBasedSkipPolicy
Sets the cui number.
setCuiNumber(int) - Method in class org.lexgrid.loader.rrf.reader.support.MrstyCuiNumberBasedSkipPolicy
Sets the cui number.
setCurrentCodingScheme(URNVersionPair) - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
setCurrentFocus(LexEvsTreeNode) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the current focus.
setCurrentFocus(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the current focus.
setCurrentIndexVersion(String) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Sets the current index version.
setCurrentPersistenceScheme(LexGridSchemaVersion) - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
Sets the current persistence scheme.
setCurrentProperties(Properties) - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
setCurrentProperties(Properties) - Method in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
setCurrentVersion(LexGridSchemaVersion) - Method in class org.lexevs.dao.database.access.DaoManager
 
setCursorName(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setCurver(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setCvf(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setCvf(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setCxn(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setCxty(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setCyclic(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setDaoCallbackService(DaoCallbackService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the dao callback service.
setDaoManager(DaoManager) - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Sets the dao manager.
setDaoManager(DaoManager) - Method in class org.lexevs.dao.database.service.daocallback.DaoManagerDaoCallbackService
Sets the dao manager.
setDatabase(String) - Method in class org.lexgrid.loader.listener.CleanupListener
 
setDatabaseRegistry(Registry) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
Sets the database registry.
setDatabaseRegistry(Registry) - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Sets the database registry.
setDatabaseServiceEventListeners(List<DatabaseServiceEventListener>) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
Sets the database service event listeners.
setDatabaseServiceManager(DatabaseServiceManager) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
Sets the database service manager.
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.dao.database.lazyload.AbstractLazyLoadable
Sets the database service manager.
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the database service manager.
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the database service manager.
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplate
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.database.key.AssociationPredicateCreatingKeyResolver
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.database.key.DatabaseServiceEntityKeyResolver
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.hardcodedvalues.AbstractIntrospectiveHardcodedValues
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.lexbigadmin.AbstractLexEvsUtilityTasklet
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
setDatabaseServiceManager(DatabaseServiceManager) - Method in class org.lexgrid.loader.writer.AbstractDatabaseServiceWriter
 
setDatabaseType(DatabaseType) - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
Sets the database type.
setDatabaseType(DatabaseType) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
setDatabaseUtility(DatabaseUtility) - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Sets the database utility.
setDatabaseUtility(DatabaseUtility) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Sets the database utility.
setDatabaseUtility(DatabaseUtility) - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
setDataSource(DataSource) - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.dao.database.type.DatabaseTypeFactory
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.registry.service.XmlRegistry
Sets the data source.
setDataSource(DataSource) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the data source.
setDataSource() - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
Sets the data source.
setDataSource() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
Sets the data source.
setDataType(String) - Method in class org.LexGrid.commonTypes.Text
Sets the value of field 'dataType'.
setDataType(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Sets the value of field 'dataType'.
setDataTypePropertySwitch(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setDataTypePropertySwitch(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setDatatypePropSwitch(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'datatypePropSwitch'.
setDate(int, Date) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setDate(int, Date, Calendar) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setDb2Name(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
setDbName(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the db name.
setDbSchemaDescription(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the db schema description.
setDbSchemaVersion(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the db schema version.
setDbUri(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the db uri.
setDbUrl(String) - Method in class org.lexevs.dao.database.utility.DatabaseValidationQueryFactory
Sets the db url.
setDbxref(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
setDbXrefs(Vector<OBODbxref>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setDeactivateDate(AbsoluteCodingSchemeVersionReference, Date) - Method in class org.lexevs.registry.service.XmlRegistry
Sets the deactivate date.
setDeactivateDate(Date) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Sets the value of field 'deactivateDate'.
setDeactivateDateInternal(AbsoluteCodingSchemeVersionReference, Date) - Method in class org.lexevs.registry.service.XmlRegistry
Sets the deactivate date internal.
setDeactivationDate(Timestamp) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the deactivation date.
setDebug(boolean) - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Sets the debug.
setDebugEnabled(boolean) - Method in class org.lexevs.logging.Logger
Sets the debug enabled.
setDecoratedProcessor(ItemProcessor<List<I>, List<ParentIdHolder<Property>>>) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
 
setDecorateNext(boolean) - Method in class org.lexevs.paging.AbstractPageableIterator
Sets the decorate next.
setDef(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setDefault(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setDefault(boolean) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setDefaultCodingScheme(String) - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
setDefaultCodingScheme(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'defaultCodingScheme'.
setDefaultCodingSchemePrefix(String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
Sets the default coding scheme prefix.
setDefaultEntityCodeNamespace(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'defaultEntityCodeNamespace'.
setDefaultHistoryPrefix(String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
Sets the default history prefix.
setDefaultInstance(LexBIGServiceImpl) - Static method in class org.LexGrid.LexBIG.Impl.LexBIGServiceImpl
Assigns the default singleton instance of the service.
setDefaultInstance(LexEVSPickListDefinitionServicesImpl) - Static method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
Assigns the default singleton instance of the service.
setDefaultInstance(LexEVSValueSetDefinitionServicesImpl) - Static method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
Assigns the default singleton instance of the service.
setDefaultLanguage(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setDefaultLanguage(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'defaultLanguage'.
setDefaultLanguage(CsmfDefaultLanguage) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'defaultLanguage'.
setDefaultLanguage(String) - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Sets the default language.
setDefaultLanguage(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'defaultLanguage'.
setDefaultNameSpace(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setDefaultPickContext(int, String) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setDefaultPickContext(String[]) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setDefaultPickContext(List<String>) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of '_defaultPickContextList' by copying the given Vector.
setDefaultPickContextAsReference(List<String>) - Method in class org.LexGrid.valueSets.PickListDefinition
Deprecated. 
setDefaultRelationshipIDPrefix(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setDefaultSortOrder(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'defaultSortOrder'.
setDefinition(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setDefinition(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setDefinition(int, Definition) - Method in class org.LexGrid.concepts.Entity
 
setDefinition(Definition[]) - Method in class org.LexGrid.concepts.Entity
 
setDefinition(List<Definition>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_definitionList' by copying the given Vector.
setDefinitionAsReference(List<Definition>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setDefinitionEntry(DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setDefinitionEntry(int, DefinitionEntry) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setDefinitionEntry(DefinitionEntry[]) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setDefinitionEntry(List<DefinitionEntry>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of '_definitionEntryList' by copying the given Vector.
setDefinitionEntryAsReference(List<DefinitionEntry>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Deprecated. 
setDefinitions(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setDefinitionSources(Vector<OBODbxref>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setDegreeOfFidelity(String) - Method in class org.LexGrid.concepts.Presentation
Sets the value of field 'degreeOfFidelity'.
setDelegate(ItemProcessor<I, O>) - Method in class org.lexgrid.loader.processor.AbstractListProcessor
Sets the delegate.
setDelegate(ItemProcessor<I, ? extends List<O>>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingDoubleListProcessor
 
setDelegate(ItemProcessor<I, O>) - Method in class org.lexgrid.loader.processor.AbstractParameterPassingListProcessor
Sets the delegate.
setDelegate(ItemProcessor<I, O>) - Method in class org.lexgrid.loader.processor.BasicListProcessor
Sets the delegate.
setDelegate(ItemReader<I>) - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
Sets the delegate.
setDelegate(ItemReader<T>) - Method in class org.lexgrid.loader.reader.FactoryBeanReader
Sets the delegate.
setDelegate(ItemReader<I>) - Method in class org.lexgrid.loader.reader.SkippingItemReader
Sets the delegate.
setDelegate(ItemWriter<Object>) - Method in class org.lexgrid.loader.writer.GenericListWriter
Sets the delegate.
setDelegate(ItemWriter<T>) - Method in class org.lexgrid.loader.writer.ListWriter
Sets the delegate.
setDelegateSystemResourceService(SystemResourceService) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
Sets the delegate system resource service.
setDeleteXmlAfterLoad(boolean) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
 
setDescription(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setDescription(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
setDescription(String) - Method in class org.lexevs.dao.database.access.association.model.DefinedNode
 
setDescription(String) - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
setDescription(String) - Method in class org.lexevs.dao.database.ibatis.tablemetadata.parameter.InsertTableMetadataBean
Sets the description.
setDescription(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Sets the value of field 'description'.
setDesignation(String) - Method in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
setDestination(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExportStatus
Sets the value of field 'destination'.
setDialect(Class) - Method in class org.lexevs.dao.database.spring.DialectSettingPostProcessor
Sets the dialect.
setDialogHandler(DialogHandler) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
setDir(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setDirection(LexEvsTreeDao.Direction) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the direction.
setDirection(LexEvsTreeDao.Direction) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the direction.
setDirectionalName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'directionalName'.
setDirectory(Directory) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
setDirectory(LuceneDirectoryFactory.NamedDirectory) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setDirectoryCreator(LuceneDirectoryCreator) - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
setDoApplyPostLoadManifest(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setDockey(String) - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
setDoComputeTransitiveClosure(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setDocumentId(int) - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.AbstractLazyLoadableCodeToReturn
Sets the document id.
setDoIndexing(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setDomain(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setDoManageInverseAndTransitiveDesignation(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setDoRegister(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setDoRemoveOnFailure(boolean) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setDouble(int, double) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setDriverClass(String) - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
Sets the driver class.
setDriverClassLoader(ClassLoader) - Static method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setDropOnClose(boolean) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
setDropScript(Resource) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
Sets the drop script.
setDropScriptPrefix(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Sets the drop script prefix.
setEditaction(ChangeType) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'editaction'.
setEditDate(Date) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'editDate'.
setEditHistory(EditHistory) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'editHistory'.
setEditHistoryEntryPoint(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setEditOrder(Long) - Method in class org.LexGrid.versions.Revision
Sets the value of field 'editOrder'.
setEffectiveDate(Date) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'effectiveDate'.
setEffectiveDate(Date) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'effectiveDate'.
setEnableListeners(boolean) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
Sets the enable listeners.
setEndTime(Date) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'endTime'.
setEntities(List<? extends Entity>) - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Sets the entities.
setEntities(Entities) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'entities'.
setEntity(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver.EntityExceptionPair
 
setEntity(Entity) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
Sets the entity.
setEntity(Entity) - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Sets the entity.
setEntity(Entity) - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Sets the entity.
setEntity(int, Entity) - Method in class org.LexGrid.concepts.Entities
 
setEntity(Entity[]) - Method in class org.LexGrid.concepts.Entities
 
setEntity(List<Entity>) - Method in class org.LexGrid.concepts.Entities
Sets the value of '_entityList' by copying the given Vector.
setEntity(Entity) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'entity'.
setEntityAsReference(List<Entity>) - Method in class org.LexGrid.concepts.Entities
Deprecated. 
setEntityAssnsGuid(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setEntityCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setEntityCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setEntityCode(String) - Method in class org.lexevs.dao.database.access.association.model.Node
 
setEntityCode(String) - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
setEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setEntityCode(String) - Method in class org.LexGrid.concepts.Entity
Sets the value of field 'entityCode'.
setEntityCode(String) - Method in class org.LexGrid.naming.SupportedAssociation
Sets the value of field 'entityCode'.
setEntityCode(String) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setEntityCode(String) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'entityCode'.
setEntityCode(String) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'entityCode'.
setEntityCode(String) - Method in class org.LexGrid.valueSets.PickListEntryExclusion
Sets the value of field 'entityCode'.
setEntityCodeNamespace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setEntityCodeNamespace(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.access.association.model.Node
 
setEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setEntityCodeNamespace(String) - Method in class org.LexGrid.concepts.Entity
Sets the value of field 'entityCodeNamespace'.
setEntityCodeNamespace(String) - Method in class org.LexGrid.naming.SupportedAssociation
Sets the value of field 'entityCodeNamespace'.
setEntityCodeNamespace(String) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setEntityCodeNamespace(String) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'entityCodeNamespace'.
setEntityCodeNamespace(String) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'entityCodeNamespace'.
setEntityCodeNamespace(String) - Method in class org.LexGrid.valueSets.PickListEntryExclusion
Sets the value of field 'entityCodeNamespace'.
setEntityCodeResolver(EntityCodeResolver<T>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Sets the entity code resolver.
setEntityCodeResolver(EntityCodeResolver<I>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
Sets the entity code resolver.
setEntityDao(EntityDao) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Sets the entity dao.
setEntityDaos(List<EntityDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the entity daos.
setEntityDaos(List<EntityDao>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Sets the entity daos.
setEntityDescription(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setEntityDescription(String) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Sets the entity description.
setEntityDescription(EntityDescription) - Method in class org.LexGrid.commonTypes.Describable
Sets the value of field 'entityDescription'.
setEntityDescription(EntityDescription) - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
Sets the value of field 'entityDescription'.
setEntityDescription(EntityDescription) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'entityDescription'.
setEntityDescription(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets the entity description.
setEntityDescription(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setEntityDescription(CsmfEntityDescription) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'entityDescription'.
setEntityDescriptionResolver(EntityDescriptionResolver<T>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Sets the entity description resolver.
setEntityGuid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.model.EntityReferencingAssociatedConcept
 
setEntityId(String) - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Sets the entity id.
setEntityIndexer(EntityIndexer) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setEntityIndexer(AssertedValueSetEntityIndexer) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
setEntityIndexer(EntityIndexer) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
setEntityIndexer(EntityIndexer) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
setEntityIndexer(EntityIndexer) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
setEntityIndexService(EntityIndexService) - Method in class org.lexevs.dao.index.service.IndexServiceManager
Sets the entity index service.
setEntityIndexService(EntityIndexService) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the entity index service.
setEntityKeyResolver(EntityKeyResolver) - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
 
setEntityNamespaceResolver(EntityNamespaceResolver<T>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicEntityResolver
Sets the entity namespace resolver.
setEntityNamespaceResolver(EntityNamespaceResolver<I>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
 
setEntityPageSize(int) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
setEntityPageSize(int) - Method in interface edu.mayo.informatics.lexgrid.convert.inserter.PagingCodingSchemeInserter
Sets the entity page size.
setEntityReference(EntityReference) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'entityReference'.
setEntityResolver(EntityResolver<I>) - Method in class org.lexgrid.loader.processor.EntityProcessor
Sets the entity resolver.
setEntityService(EntityService) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Sets the entity service.
setEntityService(EntityService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the entity service.
setEntityService(EntityService) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Sets the entity service.
setEntityType(int, String) - Method in class org.LexGrid.concepts.Entity
 
setEntityType(String[]) - Method in class org.LexGrid.concepts.Entity
 
setEntityType(List<String>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_entityTypeList' by copying the given Vector.
setEntityType(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
setEntityType(String[]) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference
 
setEntityTypeAsReference(List<String>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setEntityTypes(String[]) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setEntityTypeTablePrefix(String) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
setEntityUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateAssociationEntityBean
 
setEntityUId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Sets the entity id.
setEntityUid(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setEntityUpdates(Entity) - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Sets the entity updates.
setEntityVersions(int, EntityVersion) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
setEntityVersions(EntityVersion[]) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
setEntry(int, CodingSchemeVersion) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
setEntry(CodingSchemeVersion[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList
 
setEntry(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
setEntry(String[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes
 
setEntry(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
setEntry(String[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList
 
setEntry(int, NCIChangeEvent) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
setEntry(NCIChangeEvent[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList
 
setEntry(int, SortOption) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
setEntry(SortOption[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
setEntry(int, CodingSchemeManifest) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
setEntry(CodingSchemeManifest[]) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
setEntry(List<CodingSchemeManifest>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Sets the value of '_entryList' by copying the given Vector.
setEntryAsReference(List<CodingSchemeManifest>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Deprecated. 
setEntryLevel(LogLevel) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'entryLevel'.
setEntryOrder(Long) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setEntryOrder(Integer) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setEntryOrder(Long) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'entryOrder'.
setEntryState(EntryState) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Sets the entry state.
setEntryState(EntryState) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'entryState'.
setEntryStateId(String) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Sets the entry state id.
setEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Sets the entry state id.
setEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setEntryTime(Date) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'entryTime'.
setEntryType(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Sets the entry type.
setEntryUId(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Sets the entry id.
setEquivalentCodingScheme(String) - Method in class org.LexGrid.naming.SupportedNamespace
Sets the value of field 'equivalentCodingScheme'.
setErrorCallbackDatabaseServiceFactory(ErrorCallbackDatabaseServiceFactory) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
setErrorException(Exception) - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Sets the error exception.
setErrorObject(Object) - Method in class org.lexevs.dao.database.service.error.DefaultDatabaseError
Sets the error object.
setErrorsLogged(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'errorsLogged'.
setEscapeProcessing(boolean) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setException(Exception) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.resolution.EntityBatchInsertResolver.EntityExceptionPair
 
setException(T) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeInsertErrorEvent
Sets the exception.
setExcludeAnonymous(boolean) - Method in class org.lexevs.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Deprecated.
Sets the exclude anonymous.
setExcludeAnonymous(boolean) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.GetChildrenSqlBuilder
Sets the exclude anonymous.
setExcludesAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setExcludesAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setExclusionEntry(PickListEntryExclusion) - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Sets the value of field 'exclusionEntry'.
setExpandableStatus(LexEvsTreeNode.ExpandableStatus) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Sets the expandable status.
setExpandableStatus(LexEvsTreeNode.ExpandableStatus) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets the expandable status.
setExpirationDate(Date) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'expirationDate'.
setExpl(String) - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
setExportValueSetResolution(boolean) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setExtensionBaseClass(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Sets the value of field 'extensionBaseClass'.
setExtensionClass(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Sets the value of field 'extensionClass'.
setExtensionDescription(int, ExtensionDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
setExtensionDescription(ExtensionDescription[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList
 
setExtensionName(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
Sets the value of field 'extensionName'.
setExtensionProvider(Source) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription
Sets the value of field 'extensionProvider'.
setFetchDirection(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setFetchSize(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setFieldsToTruncate(Map<String, Integer>) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
Sets the fields to truncate.
setFileLocation(String) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
setFileLocation(URI) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
setFilteredPropertyResolvers(Map<ListFilter<Mrconso>, PropertyResolver<Mrconso>>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setFixedAtRevision(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the fixed at revision.
setFloat(int, float) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setFolder(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.options.URIOption
Sets the folder.
setFormalName(String) - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Sets the formal name.
setFormalName(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'formalName'.
setFormalName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Sets the value of field 'formalName'.
setFormalName(CsmfFormalName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'formalName'.
setFormat(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setFormatVersion(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setForwardName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setForwardName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setForwardName(String) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
setForwardName(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
setForwardName(String) - Method in class org.LexGrid.relations.AssociationEntity
Sets the value of field 'forwardName'.
setForwardNameList(List<String>) - Method in class org.lexgrid.loader.rrf.reader.support.MrrelRelationBasedSkipPolicy
 
setFrom(String) - Method in class org.lexevs.logging.SimpleEmailAppender
Sets the from.
setFromexpr(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setFromid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setFromres(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setFromrule(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setFromsid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setFromtype(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setGenericOptions(List<Option<?>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
setGenericURL(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
setGetChildrenSqlBuilder(GetChildrenSqlBuilder) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
Sets the gets the children sql builder.
setGetChildrenSqlBuilder(GetChildrenSqlBuilder) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
Sets the gets the children sql builder.
setGetNodeSqlBuilder(GetNodeSqlBuilder) - Method in class org.lexevs.tree.dao.JdbcLexEvsTreeDao
Deprecated.
Sets the gets the node sql builder.
setGetNodeSqlBuilder(GetNodeSqlBuilder) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.JdbcLexEvsTreeDao
Sets the gets the node sql builder.
setGlobalPostion(int) - Method in class org.lexevs.paging.AbstractAssertedVSResolvedConceptReferenceIterator
 
setGraph(Graph) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
setGraph(Graph) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
setGraph1(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
Sets the graph1.
setGraph2(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractMultiGraph
Sets the graph2.
setGraphdbpwd(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setGraphdbUrl(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setGraphdbUser(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setGraphQueryBuilder(GraphQueryBuilder) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Sets the graph query builder.
setGroupDiscriminator(GroupDiscriminator<I>) - Method in class org.lexgrid.loader.reader.BufferedGroupItemReader
Sets the group discriminator.
setHcd(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setHeaderFilled(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setHelpText(String) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
setHierarchyResolver(HierarchyResolver) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Sets the hierarchy resolver.
setHierarchyResolver(HierarchyResolver) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Sets the hierarchy resolver.
setHistConceptName(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHistEditAction(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHistEditDate(String, Date) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHistEntityID(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHistoryPrefix(String) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Sets the history prefix.
setHistoryVersionFileLocation(URI) - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
setHistReferenceCode(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHistReferenceName(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setHlgt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
setHlgt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setHlgt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
setHlgt_costart_sym(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_harts_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_icd10_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_icd9_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_icd9cm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_jart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setHlgt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setHlt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
setHlt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
setHlt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setHlt_costart_sym(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_harts_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_icd10_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_icd9_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_icd9cm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_jart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHlt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setHlt_whoart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
setHoldability(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setHref(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink
Sets the value of field 'href'.
setHsqlName(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
setHtgt_whoart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
setIbatisAssociationDao(IbatisAssociationDao) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
setIbatisCodingSchemeDao(IbatisCodingSchemeDao) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
setIbatisPropertyDao(IbatisPropertyDao) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Sets the ibatis property dao.
setIbatisRevisionDao(IbatisRevisionDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
setIbatisRevisionDao(IbatisRevisionDao) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
setIbatisVersionsDao(IbatisVersionsDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
Sets the ibatis versions dao.
setIbatisVersionsDao(IbatisVersionsDao) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
Sets the ibatis versions dao.
setIbatisVersionsDao(IbatisVersionsDao) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Sets the ibatis versions dao.
setIbatisVersionsDao(IbatisVersionsDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
Sets the ibatis versions dao.
setId(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setId(String) - Method in class org.lexevs.dao.database.ibatis.entity.model.IdableAssociationEntity
 
setId(String) - Method in class org.lexevs.dao.database.ibatis.entity.model.IdableEntity
 
setId(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
setId(int) - Method in class org.lexevs.registry.model.Registry
Sets the id.
setId(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the id.
setId(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedData
Sets the value of field 'id'.
setId(String) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'id'.
setId(int) - Method in class org.lexgrid.loader.rrf.staging.model.IdableMrconso
Sets the id.
setIdValueMaxSize(int) - Method in class org.lexgrid.loader.dao.template.AbstractSupportedAttributeTemplate
 
setImeta(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setImportedOBOOntologies(Vector<OBOHeader>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReader
 
setImportedOntologies(Vector<URI>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setInclude(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setInclude(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setIncludesAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setIncludesAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setInclusionEntry(PickListEntry) - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Sets the value of field 'inclusionEntry'.
setIncomplete(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
Sets the value of field 'incomplete'.
setIndexCreator(IndexCreator) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
setIndexCreator(IndexCreator) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
Sets the index creator.
setIndexCreator(IndexCreator) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
setIndexCreator(IndexCreator) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.indexer.LuceneMetadataIndexCreator
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
Sets the index dao manager.
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
Sets the index dao manager.
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
setIndexDaoManager(IndexDaoManager) - Method in class org.lexevs.locator.LexEvsServiceLocator
 
setIndexDirectory(Resource) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
setIndexDirectory(Resource) - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
setIndexDirectory(Resource) - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
setIndexDirectoryFactory(LuceneMultiDirectoryFactory) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setIndexDirectoryName(String) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setIndexName(String) - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
setIndexName(String) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
setIndexName(String) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
setIndexReader(IndexReader) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
setIndexReader(IndexReader) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
setIndexReader(IndexReader) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
setIndexRegistry(IndexRegistry) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
setIndexRegistry(IndexRegistry) - Method in class org.lexevs.dao.index.lucene.AbstractFilteringLuceneIndexTemplateDao
 
setIndexRegistry(IndexRegistry) - Method in class org.lexevs.dao.index.operation.DefaultLexEvsIndexOperations
 
setIndexRegistry(IndexRegistry) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
setIndexSearcher(IndexSearcher) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
setIndexSearcher(IndexSearcher) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory.NamedDirectory
 
setIndexSearcher(ToParentBlockJoinIndexSearcher) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
setIndexServiceManager(IndexServiceManager) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setIndexServiceManager(IndexServiceManager) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the index service manager.
setIndividualIdSetter(IndividualIdSetter<I>) - Method in class org.lexgrid.loader.processor.support.AbstractBasicPropertyResolver
Sets the individual id setter.
setInheritanceLevel(InheritanceLevelType) - Method in class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.SemNetLoaderPreferences
Sets the value of field 'inheritanceLevel'.
setInputResource(Resource) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Sets the input resource.
setInstance(String) - Method in class org.lexevs.dao.database.access.association.model.InstanceToGuid
 
setInt(int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setIntegerOptions(List<Option<Integer>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
Sets the integer options.
setInterceptor(MethodCachingInterceptor) - Method in class org.lexevs.cache.CacheWrappingFactory
 
setInternalId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
setInThreadCacheClearingState(boolean) - Method in class org.lexevs.cache.CacheRegistry
 
setIntl_ord_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
setIntlOrder(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setInUse() - Method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
setInUse() - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setInverseName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setInverseOf(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setInverseTransitive(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setIsActive(Boolean) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'isActive'.
setIsAnonymous(Boolean) - Method in class org.LexGrid.concepts.Entity
Sets the value of field 'isAnonymous'.
setIsAntiSymmetric(Boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setIsComplete(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.Core.SupportedElement
Sets the value of field 'isComplete'.
setIsComplete(Boolean) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'isComplete'.
setIsCyclic(Boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setIsDBXrefRepform(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'isDBXrefRepform'.
setIsDBXrefSource(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'isDBXrefSource'.
setIsDefault(Boolean) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'isDefault'.
setIsDefined(Boolean) - Method in class org.LexGrid.concepts.Entity
Sets the value of field 'isDefined'.
setIsDefining(Boolean) - Method in class org.LexGrid.relations.AssociatableElement
Sets the value of field 'isDefining'.
setIsForwardNavigable(Boolean) - Method in class org.LexGrid.naming.SupportedHierarchy
Sets the value of field 'isForwardNavigable'.
setIsImported(Boolean) - Method in class org.LexGrid.naming.SupportedCodingScheme
Sets the value of field 'isImported'.
setIsInferred(Boolean) - Method in class org.LexGrid.relations.AssociatableElement
Sets the value of field 'isInferred'.
setIsLocked(Boolean) - Method in class org.lexevs.registry.model.RegistryEntry
 
setIsMapping(Boolean) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'isMapping'.
setIsNavigable(Boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setIsNavigable(Boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setIsNavigable(Boolean) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
setIsNavigable(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept
Sets the value of field 'isNavigable'.
setIsNavigable(Boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
setIsNavigable(Boolean) - Method in class org.LexGrid.relations.AssociationEntity
Sets the value of field 'isNavigable'.
setIsoMap(Map<String, String>) - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
setIsoMap(Map<String, String>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setIsoMap(Map<String, String>) - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
 
setIsoMap(Map<String, String>) - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
setIspref(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setIsPreferred(Boolean) - Method in class org.LexGrid.concepts.Definition
Sets the value of field 'isPreferred'.
setIsPreferred(Boolean) - Method in class org.LexGrid.concepts.Presentation
Sets the value of field 'isPreferred'.
setIsReflexive(Boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setIsResourceUriFolder(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
setIsResourceUriFolder(boolean) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.OptionHolder
Sets the checks if is resource uri folder.
setIsSelectable(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setIsSymmetric(Boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setIsTransitive(Boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setIsTransitive(Boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setIsTransitive(Boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setIsTransitive(Boolean) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
setIsTransitive(Boolean) - Method in class org.LexGrid.relations.AssociationEntity
Sets the value of field 'isTransitive'.
setIsTransitiveManaged(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'isTransitiveManaged'.
setItem(T) - Method in class org.lexgrid.loader.wrappers.CodingSchemeIdHolder
 
setItem1List(List<I1>) - Method in class org.lexgrid.loader.reader.support.CompositeReaderChunk
Sets the item1 list.
setItem2List(List<I2>) - Method in class org.lexgrid.loader.reader.support.CompositeReaderChunk
Sets the item2 list.
setIteratorFactory(ChildTreeNodeIteratorFactory) - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Sets the iterator factory.
setIteratorFactory(ChildTreeNodeIteratorFactory) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Sets the iterator factory.
setJobRepositoryManager(JobRepositoryManager) - Method in class org.lexgrid.loader.listener.CleanupListener
Sets the job repository manager.
setKey(String) - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Sets the key.
setKey(String) - Method in class org.lexgrid.loader.staging.support.KeyValuePair
Sets the key.
setLangauage(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setLanguage(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
setLanguage(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
setLanguage(String) - Method in class org.LexGrid.commonTypes.Property
Sets the value of field 'language'.
setLanguage(String) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'language'.
setLastMetaDataType(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
setLastUpdateDate(Timestamp) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the last update date.
setLastUpdateTime(Timestamp) - Method in class org.lexevs.registry.model.Registry
Sets the last update time.
setLastUpdateTime(Date) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Sets the value of field 'lastUpdateTime'.
setLastUsedDbIdentifer(String) - Method in class org.lexevs.registry.model.Registry
Sets the last used db identifer.
setLastUsedHistoryIdentifer(String) - Method in class org.lexevs.registry.model.Registry
Sets the last used history identifer.
setLat(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setLat(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setLbGui(LB_GUI) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
setLeafOnly(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setLeafOnly(Boolean) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'leafOnly'.
setLexBIGService(LexBIGService) - Method in interface org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods
Assign the associated LexBIGService instance.
setLexBIGService(LexBIGService) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCItSourceAssertedValueSetUpdateService
 
setLexBIGService(LexBIGService) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImpl
Assign the associated LexBIGService instance.
setLexBIGService(LexBIGService) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
setLexBIGService(LexBIGService) - Method in class org.lexgrid.resolvedvalueset.impl.LexEVSResolvedValueSetServiceImpl
Return the associated LexBIGService instance; lazy initialized as required.
setLexBIGService(LexBIGService) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Record a persistent link to the LexBIG service for use by this and other classes
setLexBIGService(LexBIGService) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
Assign the associated LexBIGService instance.
setLexBIGService(LexBIGService) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
Assign the associated LexBIGService instance.
setLexBIGService(LexBIGService) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
setLexEvsDatabaseOperations(LexEvsDatabaseOperations) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the lex evs database operations.
setLexEvsDatabaseOperations(LexEvsDatabaseOperations) - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Sets the lex evs database operations.
setLexEvsDatabaseOperations(LexEvsDatabaseOperations) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the lex evs database operations.
setLexEvsDatabaseOperations(LexEvsDatabaseOperations) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
setLexEvsDatabaseOperations(LexEvsDatabaseOperations) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
setLexEvsDatabaseSchemaSetup(LexEvsDatabaseSchemaSetup) - Method in class org.lexevs.dao.database.scheme.DefaultVersion20Scheme
Sets the lex evs database schema setup.
setLexEvsDatabaseSchemaSetup(LexEvsDatabaseSchemaSetup) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
setLexEvsIndexOperations(LexEvsIndexOperations) - Method in class org.lexevs.locator.LexEvsServiceLocator
 
setLexEvsServiceLocator(LexEvsServiceLocator) - Method in class org.lexgrid.loader.rrf.factory.IsoMapFactory
 
setLexEvsTreeDao(LexEvsTreeDao) - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Sets the lex evs tree dao.
setLexEvsTreeDao(LexEvsTreeDao) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Sets the lex evs tree dao.
setLexEvsTreeDao(LexEvsTreeDao) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Sets the lex evs tree dao.
setLexEvsTreeDao(LexEvsTreeDao) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Sets the lex evs tree dao.
setLexGridSchemaInstalled(boolean) - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Sets the lex grid schema installed.
setLexGridSchemaInstalled(boolean) - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Sets the lex grid schema installed.
setLexGridSchemaVersion(LexGridSchemaVersion) - Method in class org.lexevs.dao.database.access.factory.DaoFactory
Sets the lex grid schema version.
setLink(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Sets the link.
setList(List<T>) - Method in class org.lexgrid.loader.reader.ListReader
Sets the list.
setListenerRegistry(ListenerRegistry) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the listener registry.
setListenerRegistry(ListenerRegistry) - Method in class org.lexevs.dao.database.service.event.DatabaseServiceEventSupport
Sets the listener registry.
setListFilter(ListFilter<I>) - Method in class org.lexgrid.loader.processor.PreFilteringListProcessor
 
setListIdSetter(ListIdSetter<ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyListIdAddingDecorator
 
setListIdSetter(ListIdSetter<ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
setLlt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_costart_sym(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_currency(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_currency(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setLlt_harts_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_icd10_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_icd9_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_icd9cm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_jart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLlt_whoart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setLoaded(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setLoadedCodingSchemes(URNVersionPair[]) - Method in class org.lexgrid.loader.AbstractSpringBatchLoader
 
setLoaderPreferences(LoaderPreferences) - Method in class edu.mayo.informatics.lexgrid.convert.Conversions.ReadImpl
Sets the Loader's LoaderPreferences
setLoaderPreferences(LoaderPreferences) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
Sets the Loader's LoaderPreferences
setLoaderPreferences(LoaderPreferences) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Sets the Loader's LoaderPreferences.
setLoaderPreferences(URI) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Loader
Sets the Loader's LoaderPreferences URI.
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Sets the Loader's LoaderPreferences.
setLoaderPreferences(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
Sets the Loader's LoaderPreferences.
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setLoaderPreferences(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setLoaderPreferences(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setLoaderPreferences(LoaderPreferences) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setLoaderPreferences(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setLoaderPrefs(LoaderPreferences) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL72LGMain
 
setLoaderPrefs(LoaderPreferences) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGrid
 
setLoading(boolean) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
setLoadSource(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Sets the value of field 'loadSource'.
setLocalId(String) - Method in class org.LexGrid.naming.URIMap
Sets the value of field 'localId'.
setLocalName(int, String) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setLocalName(String[]) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setLocalName(List<String>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of '_localNameList' by copying the given Vector.
setLocalName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Sets the value of field 'localName'.
setLocalName(int, CsmfLocalName) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
setLocalName(CsmfLocalName[]) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
setLocalName(List<CsmfLocalName>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of '_localNameList' by copying the given Vector.
setLocalNameAsReference(List<String>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Deprecated. 
setLocalNameAsReference(List<CsmfLocalName>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Deprecated. 
setLocalNames(List<String>) - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Sets the local names.
setLocator(LexEvsServiceLocator) - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
setLocator(LexEvsServiceLocator) - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
setLogger(LgMessageDirectorIF) - Method in class edu.mayo.informatics.resourcereader.core.impl.Resource
 
setLogger(LgLoggerIF) - Method in class org.lexevs.cache.AbstractMethodCachingBean
Sets the logger.
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
setLogger(Logger) - Method in class org.lexevs.dao.database.service.AbstractDatabaseService
Sets the logger.
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
Sets the logger.
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Sets the logger.
setLogger(Logger) - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
setLogger(LgLoggerIF) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
 
setLogger(LgLoggerIF) - Method in class org.lexevs.logging.AbstractLoggingBean
Sets the logger.
setLogger(LgLoggerIF) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the logger.
setLogger(LgLoggerIF) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
setLogger(StatusTrackingLogger) - Method in class org.lexgrid.loader.logging.LoggingBean
 
setLoginTimeout(int) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
setLogWriter(PrintWriter) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
setLong(int, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setLuceneDirectoryCreator(LuceneDirectoryCreator) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setLuceneDirectoryCreator(LuceneDirectoryCreator) - Method in class org.lexevs.dao.index.lucenesupport.LuceneDirectoryFactory
 
setLuceneDirectoryCreator(LuceneDirectoryCreator) - Method in class org.lexevs.dao.index.lucenesupport.LuceneMultiDirectoryFactory
 
setLuceneDirectoryCreator(LuceneDirectoryCreator) - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
setLuceneEntityDao(LuceneEntityDao) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCode
 
setLuceneEntityDao(EntityDao) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
 
setLuceneIndexTemplate(LuceneIndexTemplate) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setLuceneIndexTemplate(LuceneIndexTemplate) - Method in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
 
setLuceneIndexTemplate(LuceneIndexTemplate) - Method in class org.lexevs.dao.index.lucene.v2010.metadata.LuceneMetadataDao
 
setLuceneIndexTemplate(LuceneIndexTemplate) - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
setLui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setLui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setLui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setMajorVersion(int) - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Sets the major version.
setManifestLocation(URI) - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
setManifestLocation(URI) - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
setManifestLocation(URI) - Method in interface edu.mayo.informatics.resourcereader.core.IF.ResourceManifest
 
setManifestLocation(URI) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
setManifestUtil(ManifestUtil) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setMapForwardNames(Map<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMapForwardNames(Map<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMapid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMappingCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setMappings(Mappings) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'mappings'.
setMappings(CsmfMappings) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'mappings'.
setMappings(Mappings) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'mappings'.
setMappings(Mappings) - Method in class org.LexGrid.valueSets.PickListDefinitions
Sets the value of field 'mappings'.
setMappings(Mappings) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'mappings'.
setMappings(Mappings) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Sets the value of field 'mappings'.
setMapRank(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setMapres(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMapReverseNames(Map<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMapReverseNames(Map<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMaprule(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMapsab(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMapsetcui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMapsid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMapsubsetid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMaptype(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setMasterGroupItemReader(ItemReader<List<I1>>) - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
setMatchAlgorithm(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setMatchAlgorithm(String) - Method in class org.LexGrid.valueSets.PropertyMatchValue
Sets the value of field 'matchAlgorithm'.
setMatchConceptCode(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchConceptCode'.
setMatchConceptStatus(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchConceptStatus'.
setMatchIfNoContext(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setMatchIfNoContext(Boolean) - Method in class org.LexGrid.concepts.Presentation
Sets the value of field 'matchIfNoContext'.
setMatchIfNoContext(Boolean) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'matchIfNoContext'.
setMatchNoopNamespaces(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchNoopNamespaces'.
setMatchPattern_conceptCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_conceptCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_conceptStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_conceptStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_inactiveStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_inactiveStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_noopNamespaces(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_noopNamespaces(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_rootName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_rootName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_xmlRepFormNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_xmlRepFormNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_xmlSourceNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_xmlSourceNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchPattern_xmlTextNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchPattern_xmlTextNames(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchRootName(Pattern) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setMatchRootName(Pattern) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setMatchRootName(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchRootName'.
setMatchText(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQuery.Builder
 
setMatchXMLRepformNames(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchXMLRepformNames'.
setMatchXMLSourceNames(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchXMLSourceNames'.
setMatchXMLTextNames(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'matchXMLTextNames'.
setMaxBufferSize(int) - Method in class org.lexgrid.loader.reader.SizeLimitedBufferedGroupItemReader
Sets the max buffer size.
setMaxBufferSize(int) - Method in class org.lexgrid.loader.writer.GenericListWriter
Sets the max buffer size.
setMaxBufferSize(int) - Method in class org.lexgrid.loader.writer.ListWriter
Sets the max buffer size.
setMaxEntitiesToReturn(int) - Method in class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.LexGridMarshalListener
 
setMaxFieldSize(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setMaxLeafCacheSize(int) - Method in class org.lexgrid.valuesets.helper.VSDServiceHelper
Set the maximum cache size to be used when traversing graphs looking for leaf nodes.
setMaxNamespaceLength(int) - Method in class org.lexgrid.loader.processor.support.validator.NamespaceSizeValidator
Sets the max namespace length.
setMaxRows(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setMedDRA_version(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setMessage(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'message'.
setMessage(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'message'.
setMessageNumber(Integer) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'messageNumber'.
setMessages_(LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setMetadataDaos(List<MetadataDao>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
setMetadataFactory(ConcurrentMetaData) - Method in class org.lexevs.dao.indexer.utility.LuceneMultiIndexMetaDataFactoryTest
 
setMetaDataFileLocation(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
setMetadataIndexCreator(MetadataIndexCreator) - Method in class org.lexevs.dao.index.service.metadata.LuceneMetadataIndexService
 
setMetadataIndexService(MetadataIndexService) - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
setMetadataIndexService(MetadataIndexService) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
setMetadataProperty(int, MetadataProperty) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
setMetadataProperty(MetadataProperty[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList
 
setMetaDirectories(ConcurrentMetaData) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
setMetaLangName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setMetaMrconsoStagingDao(MetaMrconsoStagingDao) - Method in class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolver
 
setMetaui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setMetaui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setMinimumNumberShouldMatch(int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl.QueryBuilder
 
setMinorVersion(int) - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
Sets the minor version.
setModelFormatVersion(String) - Method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
Sets the model format version.
setModifiedByProperty(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setModifiedsAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setModifier(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
setModifiesAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setModifiesAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setModuleDescription(int, ModuleDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
setModuleDescription(ModuleDescription[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList
 
setMonitorLoader(boolean) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
setMrconsoGroupEntityProcessor(MrconsoGroupEntityProcessor) - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.MrhierAssocAndPropQualProcessor
 
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
Sets the mrconso staging dao.
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.MedRTRelationResolver
Sets the mrconso staging dao.
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrdefEntityCodeResolver
Sets the mrconso staging dao.
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
Sets the mrconso staging dao.
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
 
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.UmlsSourceEntityCodeAndCodingSchemeResolver
Sets the mrconso staging dao.
setMrconsoStagingDao(MrconsoStagingDao) - Method in class org.lexgrid.loader.umls.processor.support.UmlsTargetEntityCodeAndCodingSchemeResolver
Sets the mrconso staging dao.
setMrdefItemProcessor(ItemProcessor<Mrdef, ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
setMrdocReader(ItemReader<Mrdoc>) - Method in class org.lexgrid.loader.meta.data.codingscheme.MetaCodingSchemeIdSetter
 
setMrrankList(List<Mrrank>) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrrankUtility
Sets the mrrank list.
setMrrankUtility(MrrankUtility) - Method in class org.lexgrid.loader.rrf.data.property.MrconsoPropertyComparator
Sets the mrrank utility.
setMrRankUtility(MrrankUtility) - Method in class org.lexgrid.loader.rrf.processor.support.MrrankPropertyQualifierResolver
 
setMrrankUtility(MrrankUtility) - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Sets the mrrank utility.
setMrsabList(List<Mrsab>) - Method in class org.lexgrid.loader.rrf.data.codingscheme.DefaultMrsabUtility
Sets the mrsab list.
setMrsabUtility(MrsabUtility) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Sets the mrsab utility.
setMrsabUtility(MrsabUtility) - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
Sets the mrsab utility.
setMrsabUtility(MrsabUtility) - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
Sets the mrsab utility.
setMrsatItemProcessor(ItemProcessor<Mrsat, ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
setMrsatMap(Map<String, MrsatUsageFactory.MrsatPropertyTypes>) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
Sets the mrsat map.
setMrsatUtility(MrsatUtility) - Method in class org.lexgrid.loader.umls.processor.support.MrsatPropertyResolver
Sets the mrsat utility.
setMrsatUtility(MrsatUtility) - Method in class org.lexgrid.loader.umls.reader.support.MrsatSkipPolicy
Sets the mrsat utility.
setMrstyItemProcessor(ItemProcessor<Mrsty, ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.meta.processor.MetaTotalEntityProcessor
 
setMultiDirectoryFactory(LuceneMultiDirectoryFactory) - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
setMultipleSelectionsAllowed(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
 
setMultipleSelectionsAllowed(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
 
setMustHaveCodes(List<GraphQuery.CodeNamespacePair>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setMustHaveEntityTypes(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setMustHaveEntityTypes(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setMustHaveNamespaces(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setMustHaveSourceCodes(List<GraphQuery.CodeNamespacePair>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setMustHaveSourceNamespaces(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setMustHaveTargetCodes(List<GraphQuery.CodeNamespacePair>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setMustHaveTargetNamespaces(List<String>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setMyClassLoader(MyClassLoader) - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
 
setMyClassLoader(MyClassLoader) - Method in class org.lexevs.dao.database.service.event.registry.ExtensionLoadingListenerRegistry
Sets the my class loader.
setMyClassLoader(MyClassLoader) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the my class loader.
setMysql_collation(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setMysqlName(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
setName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
setName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Sets the value of field 'name'.
setName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.NameAndValue
Sets the value of field 'name'.
setName(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Sets the value of field 'name'.
setName(String) - Static method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
setName(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
setName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
setName(String[]) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames
 
setName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
setName(String[]) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames
 
setName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
setName(String[]) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames
 
setName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
setName(String[]) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
setName(int, String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
setName(String[]) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
setNameAndValue(int, NameAndValue) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
setNameAndValue(NameAndValue[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList
 
setNamedDirectories(List<LuceneDirectoryFactory.NamedDirectory>) - Method in class org.lexevs.dao.index.lucenesupport.MultiBaseLuceneIndexTemplate
 
setNamedDirectory(LuceneDirectoryFactory.NamedDirectory) - Method in class org.lexevs.dao.index.lucenesupport.BaseLuceneIndexTemplate
 
setNamespace(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setNamespace(String) - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
setNamespace(String) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.CodeNamespacePair
Sets the namespace.
setNamespace(String) - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
Sets the namespace.
setNamespace(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
Sets the namespace.
setNamespace(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setNamespace(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback.AssociatedConceptKey
Sets the namespace.
setNameVersionKey(String) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setNCharacterStream(int, Reader) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNCharacterStream(int, Reader, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNciHistoryDaos(List<NciHistoryDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setNciHistoryService(NciHistoryService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the nci history service.
setNciHistoryXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setNClob(int, NClob) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNClob(int, Reader) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNClob(int, Reader, long) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNetworkTimeout(Executor, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setNextDatabasePrefixGenerator(NextDatabasePrefixGenerator) - Method in class org.lexevs.registry.service.DatabaseRegistry
Sets the next database prefix generator.
setNoCodeHandler(NoCodeHandler<Mrconso>) - Method in class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityCodeResolver
Sets the no code handler.
setNodeAddedListener(List<NodeAddedListener>) - Method in class org.lexevs.tree.listener.NodeAddedListenerSupport
Deprecated.
Sets the node added listener.
setNodeAddedListener(List<NodeAddedListener>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.listener.NodeAddedListenerSupport
Sets the node added listener.
setNodeHasBeenPrinted(boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
setNodes(Map<GraphQuery.CodeNamespacePair, AssociatedConcept>) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
setNonBatchTemplateInserter(Inserter) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Sets the non batch template inserter.
setNonEntityConceptReferenceList(DefaultCodeHolder) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
setNs(String) - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
setNString(int, String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNull(int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNull(int, int, String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setNull_field(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setNull_field(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setNull_field1(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
setNull_field2(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
setNull_field3(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
setNumConceptsLoaded(Integer) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Sets the value of field 'numConceptsLoaded'.
setNumRelationsLoaded(Integer) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus
Sets the value of field 'numRelationsLoaded'.
setObject(int, Object) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setObject(int, Object, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setObject(int, Object, int, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setOBOAbbreviations(OBOAbbreviations) - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
setOBOInstances(OBOInstances) - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
setOBORelations(OBORelations) - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
setOBOTerms(OBOTerms) - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
setObsolete(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setOntology(OWLOntology) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
setOntology_node_child_count(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
setOntology_node_id(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
setOntology_node_name(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
setOntology_node_ns(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.OntologyNode
 
setOntologyShortFormProvider(OntologyIRIShortFormProvider) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
setOntologyVersion(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setOperator(DefinitionOperator) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'operator'.
setOptionalQualifierResolver(List<OptionalQualifierResolver<I>>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsListProcessor
 
setOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setOptions(OptionHolder) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setOptionValue(Object) - Method in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
setOptionValue(T) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractBaseOption
 
setOptionValue(T) - Method in interface org.LexGrid.LexBIG.Extensions.Load.options.BaseOption
Sets the option value.
setOracleName(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
setOrientation(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
setOrientation(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
setOriginal(T) - Method in class org.lexevs.dao.database.service.event.revision.ReviseEvent
Sets the original.
setOriginalCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Sets the original coding scheme.
setOriginalEntity(Entity) - Method in class org.lexevs.dao.database.service.event.entity.EntityUpdateEvent
Sets the original entity.
setOverwrite(boolean) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Sets the overwrite.
setOwner(String) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'owner'.
setPageSize(int) - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Sets the page size.
setPageSize(int) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Sets the page size.
setPageSize(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Sets the page size.
setPageSize(int) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Sets the page size.
setPageSize(int) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Sets the page size.
setParam1(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameter
Sets the param1.
setParam2(Collection<String>) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollection
 
setParam2(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTuple
Sets the param2.
setParam3(Collection<String>) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTuple
 
setParam3(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterTriple
Sets the param3.
setParam4(Collection<String>) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterCollectionTriple
 
setParam4(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuad
Sets the param4.
setParam5(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterQuint
 
setParam6(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedParameterSextet
 
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.DateTypeHandler
 
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NCIHistoryChangeTypeTypeHandler
 
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NumericBooleanTypeHandler
 
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.PropertyTypeHandler
From Java to DB.
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.StringArrayTypeHandler
From Java to DB.
setParameter(ParameterSetter, Object) - Method in class org.lexevs.dao.database.ibatis.sqlmap.VariablePrimaryKeyTypeHandler
 
setParameter(String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
setParameterizedlistIdSetter(ParameterizedListIdSetter<ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
 
setParams(AssertedValueSetParameters) - Method in class org.lexevs.dao.database.service.valuesets.AssertedValueSetServiceImpl
 
setParent(Object) - Method in class org.mayo.edu.lgModel.LexGridBase
 
setParentCallback(LexEvsTreeNode) - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIterator
Deprecated.
Sets the parent callback.
setParentCallback(LexEvsTreeNode) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIterator
Sets the parent callback.
setParentComposite(Composite) - Method in interface org.LexGrid.LexBIG.gui.plugin.TabbedContent
This method will be called before getControl so that the implementing class can create a control that has the correct parent.
setParentId(String) - Method in class org.lexevs.dao.database.access.association.batch.AssociationQualifierBatchInsertItem
Sets the parent id.
setParentId(String) - Method in class org.lexevs.dao.database.access.association.batch.AssociationSourceBatchInsertItem
Sets the parent id.
setParentId(String) - Method in class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Sets the parent id.
setParentId(String) - Method in class org.lexgrid.loader.wrappers.ParentIdHolder
 
setParentType(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Sets the parent type.
setParentUId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Sets the parent id.
setParentUid(String) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService.ParentUidReferencingId
Sets the parent uid.
setPath(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets path
setPath(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the transitive path
setPathToRootResolver(PathToRootResolver) - Method in class org.lexevs.tree.service.PathToRootTreeServiceImpl
Deprecated.
Sets the path to root resolver.
setPathToRootResolver(PathToRootResolver) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImpl
Sets the path to root resolver.
setPathToRootResovleOption(String) - Method in class org.LexGrid.LexBIG.DataModel.enums.HierarchyPathResolveOption
Sets the value of field 'pathToRootResovleOption'.
setPaui(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setPendingStatus(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the pending status.
setPersistenceScheme(PersistenceScheme) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
setPersistenceSchemes(List<PersistenceScheme>) - Method in class org.lexevs.dao.database.scheme.PersistenceSchemeFactory
Sets the persistence schemes.
setPickContext(int, String) - Method in class org.LexGrid.valueSets.PickListEntry
 
setPickContext(String[]) - Method in class org.LexGrid.valueSets.PickListEntry
 
setPickContext(List<String>) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of '_pickContextList' by copying the given Vector.
setPickContextAsReference(List<String>) - Method in class org.LexGrid.valueSets.PickListEntry
Deprecated. 
setPickList(List<T>) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractMultiValueOption
 
setPickList(List<T>) - Method in class edu.mayo.informatics.lexgrid.convert.options.AbstractOption
 
setPickListDaos(List<PickListDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the pick list definition daos.
setPickListDefinition(PickListDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
Sets the pick list definition.
setPickListDefinition(int, PickListDefinition) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
setPickListDefinition(PickListDefinition[]) - Method in class org.LexGrid.valueSets.PickListDefinitions
 
setPickListDefinition(List<PickListDefinition>) - Method in class org.LexGrid.valueSets.PickListDefinitions
Sets the value of '_pickListDefinitionList' by copying the given Vector.
setPickListDefinitionAsReference(List<PickListDefinition>) - Method in class org.LexGrid.valueSets.PickListDefinitions
Deprecated. 
setPickListDefinitions(PickListDefinition[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
setPickListDefinitions(PickListDefinition[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setPickListDefinitions(PickListDefinitions) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'pickListDefinitions'.
setPickListDefinitionService(PickListDefinitionService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the pick list definition service.
setPickListDefinitionService(PickListDefinitionService) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Sets the pick list definition service.
setPickListEntry(PickListEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setPickListEntryExclusion(PickListEntryExclusion) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setPickListEntryId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setPickListEntryId(String) - Method in class org.LexGrid.valueSets.PickListEntryNode
Sets the value of field 'pickListEntryId'.
setPickListEntryNode(PickListEntryNode) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setPickListEntryNode(int, PickListEntryNode) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setPickListEntryNode(PickListEntryNode[]) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setPickListEntryNode(List<PickListEntryNode>) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of '_pickListEntryNodeList' by copying the given Vector.
setPickListEntryNodeAsReference(List<PickListEntryNode>) - Method in class org.LexGrid.valueSets.PickListDefinition
Deprecated. 
setPickListEntryNodeChoice(PickListEntryNodeChoice) - Method in class org.LexGrid.valueSets.PickListEntryNode
Sets the value of field 'pickListEntryNodeChoice'.
setPickListEntryNodeDao(PickListEntryNodeDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
setPickListEntryNodeDaos(List<PickListEntryNodeDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setPickListEntryNodeService(PickListEntryNodeService) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
Sets the pick list entry node service.
setPickListId(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setPickListId(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'pickListId'.
setPickListUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setPickText(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setPickText(String) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setPickText(String) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'pickText'.
setPlaceholders(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Sets the placeholders.
setPoolable(boolean) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setPopulatorSteps(Map<DatabaseType, Step>) - Method in class org.lexgrid.loader.rrf.staging.populatorstep.PopulatorStepFactory
Sets the populator steps.
setPostgreSqlName(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
 
setPreferencesURI(URI) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces.PreferenceLoader
Sets the Loader to use the specified XML Preferences XML file.
setPreferencesURI(URI) - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
setPreferred(List<Presentation>) - Method in class org.lexgrid.loader.data.property.GroupByLanguagePreferredSetter
Assumes a sorted list.
setPreferred(List<I>) - Method in interface org.lexgrid.loader.data.property.PreferredSetter
Sets the preferred.
setPreferredForLanguage(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
setPreferredSetter(PreferredSetter<ParentIdHolder<Property>>) - Method in class org.lexgrid.loader.processor.EntityPropertyListProcessor
 
setPreferrredPresentation(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setPrefix(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setPrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.PrefixedTableParameterBean
Sets the prefix.
setPrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.SequentialMappedParameterBean
 
setPrefix(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the prefix.
setPrefix(String) - Method in class org.lexgrid.loader.data.property.ParameterizedSequentialIdSetter
Sets the prefix.
setPrefix(String) - Method in class org.lexgrid.loader.data.property.PrefixedSequentialIdSetter
Sets the prefix.
setPrefix(String) - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
setPrefix(String) - Method in class org.lexgrid.loader.listener.CleanupListener
 
setPrefix(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Sets the prefix.
setPrefix(String) - Method in class org.lexgrid.loader.setup.JobRepositoryManager
 
setPrefix(String) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
 
setPrefix(String) - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
 
setPrefixKey(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
setPrefixLengthLimit(int) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Sets the prefix length limit.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.access.AbstractBaseDao
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.hibernate.prefix.PrefixInterceptor
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.key.incrementer.MysqlTableBasedBigIntKeyIncrementer
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.key.incrementer.SequenceBasedBigIntKeyIncrementer
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.dao.database.prefix.PrefixFactory
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.lexevs.tree.dao.sqlbuilder.AbstractSqlBuilder
Deprecated.
Sets the prefix resolver.
setPrefixResolver(PrefixResolver) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.sqlbuilder.AbstractSqlBuilder
Sets the prefix resolver.
setPresentation(int, Presentation) - Method in class org.LexGrid.concepts.Entity
 
setPresentation(Presentation[]) - Method in class org.LexGrid.concepts.Entity
 
setPresentation(List<Presentation>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_presentationList' by copying the given Vector.
setPresentationAsReference(List<Presentation>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setPresentationResolver(PropertyResolver<Mrconso>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setPresentations(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setPreviousEntryStateUId(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
Sets the previous entry state id.
setPreviousTag(String) - Method in class org.lexevs.registry.event.events.TagUpdateEvent
Sets the previous tag.
setPrevRevision(String) - Method in class org.LexGrid.versions.EntryState
Sets the value of field 'prevRevision'.
setPrevRevisionUId(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
 
setPrimary_soc_fg(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setPrimaryKeyIncrementer(PrimaryKeyIncrementer) - Method in class org.lexevs.dao.database.access.AbstractBaseDao
 
setPrimaryKeyIncrementer(PrimaryKeyIncrementer) - Method in class org.lexevs.dao.database.ibatis.sqlmap.VariablePrimaryKeyTypeHandler
 
setPrimaryKeyIncrementer(PrimaryKeyIncrementer) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setPrimaryKeyIncrementer(PrimaryKeyIncrementer) - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
 
setPrimaryKeyIncrementers(List<PrimaryKeyIncrementer>) - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Sets the primary key incrementers.
setPrimaryKeyStrategy(String) - Method in class org.lexevs.system.constants.SystemVariables
 
setPrimarySystemResourceService(SystemResourceService) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
Sets the primary system resource service.
setPrintName(MifPrintName) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setPrioritized_comment_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setPrioritized_comment_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setPrioritized_definition_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setPrioritized_definition_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setPrioritized_presentation_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setPrioritized_presentation_names(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setPrioritizedCommentNames(PrioritizedCommentNames) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'prioritizedCommentNames'.
setPrioritizedDefinitionNames(PrioritizedDefinitionNames) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'prioritizedDefinitionNames'.
setPrioritizedPresentationNames(PrioritizedPresentationNames) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'prioritizedPresentationNames'.
setProcessComplexProperties(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setProcessComplexProperties(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setProcessComplexProps(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'processComplexProps'.
setProcessConceptsForObjectProperties(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setProcessConceptsForObjectProperties(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setProcessor(ItemProcessor<List<I>, List<O>>) - Method in class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
Sets the processor.
setProcessor(ItemProcessor<I, O>) - Method in class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
Sets the processor.
setProcessor(ItemProcessor<I, O>) - Method in class org.lexgrid.loader.reader.decorator.ProcessingListDecorator
Sets the processor.
setProcessorList(List<ItemProcessor<I, ?>>) - Method in class org.lexgrid.loader.processor.ClassifierCompositeProcessor
Sets the processor list.
setProcessors(List<ItemProcessor<I, ? extends List<O>>>) - Method in class org.lexgrid.loader.processor.CombiningListProcessor
 
setProcessors(List<ItemProcessor<I, O>>) - Method in class org.lexgrid.loader.processor.CombiningProcessor
 
setProcessStrictOWL(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setProcessStrictOWL(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setProcessUID(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'processUID'.
setProgramName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.LogEntry
Sets the value of field 'programName'.
setProperties(Properties) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'properties'.
setProperties(Properties) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'properties'.
setProperties(Properties) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'properties'.
setProperties(Properties) - Method in class org.LexGrid.valueSets.PickListEntryNode
Sets the value of field 'properties'.
setProperties(Properties) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'properties'.
setPropertiesFlag(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
setPropertiesPresent(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
setPropertiesPresent(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setPropertiesPresent(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setProperty(Property) - Method in class org.lexevs.dao.database.access.property.batch.PropertyBatchInsertItem
Sets the property.
setProperty(Property) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
Sets the property.
setProperty(Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.VSPropertyBean
 
setProperty(int, Property) - Method in class org.LexGrid.commonTypes.Properties
 
setProperty(Property[]) - Method in class org.LexGrid.commonTypes.Properties
 
setProperty(List<Property>) - Method in class org.LexGrid.commonTypes.Properties
Sets the value of '_propertyList' by copying the given Vector.
setProperty(int, Property) - Method in class org.LexGrid.concepts.Entity
 
setProperty(Property[]) - Method in class org.LexGrid.concepts.Entity
 
setProperty(List<Property>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_propertyList' by copying the given Vector.
setPropertyAsReference(List<Property>) - Method in class org.LexGrid.commonTypes.Properties
Deprecated. 
setPropertyAsReference(List<Property>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setPropertyComparator(Comparator<I>) - Method in class org.lexgrid.loader.processor.SortingListProcessor
Sets the property comparator.
setPropertyDao(PropertyDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
setPropertyDao(PropertyDao) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
setPropertyDao(PropertyDao) - Method in class org.lexevs.dao.database.lazyload.LazyLoadableEntity
Sets the property dao.
setPropertyDaos(List<PropertyDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the property daos.
setPropertyId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setPropertyId(String) - Method in class org.LexGrid.commonTypes.Property
Sets the value of field 'propertyId'.
setPropertyId(String) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntry
 
setPropertyId(String) - Method in class org.LexGrid.valueSets.PickListEntry
Sets the value of field 'propertyId'.
setPropertyLink(int, PropertyLink) - Method in class org.LexGrid.concepts.Entity
 
setPropertyLink(PropertyLink[]) - Method in class org.LexGrid.concepts.Entity
 
setPropertyLink(List<PropertyLink>) - Method in class org.LexGrid.concepts.Entity
Sets the value of '_propertyLinkList' by copying the given Vector.
setPropertyLink(String) - Method in class org.LexGrid.concepts.PropertyLink
Sets the value of field 'propertyLink'.
setPropertyLinkAsReference(List<PropertyLink>) - Method in class org.LexGrid.concepts.Entity
Deprecated. 
setPropertyMatchValue(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setPropertyMatchValue(PropertyMatchValue) - Method in class org.LexGrid.valueSets.PropertyReference
Sets the value of field 'propertyMatchValue'.
setPropertyMultiAttribList(List<InsertPropertyMultiAttribBean>) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertOrUpdatePropertyBean
 
setPropertyName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptProperty
 
setPropertyName(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setPropertyName(String) - Method in class org.LexGrid.commonTypes.Property
Sets the value of field 'propertyName'.
setPropertyName(String) - Method in class org.LexGrid.valueSets.PropertyReference
Sets the value of field 'propertyName'.
setPropertyName_primitive(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setPropertyName_primitive(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setPropertyName_type(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setPropertyName_type(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.PreferenceManager
 
setPropertyQualifier(int, PropertyQualifier) - Method in class org.LexGrid.commonTypes.Property
 
setPropertyQualifier(PropertyQualifier[]) - Method in class org.LexGrid.commonTypes.Property
 
setPropertyQualifier(List<PropertyQualifier>) - Method in class org.LexGrid.commonTypes.Property
Sets the value of '_propertyQualifierList' by copying the given Vector.
setPropertyQualifierAsReference(List<PropertyQualifier>) - Method in class org.LexGrid.commonTypes.Property
Deprecated. 
setPropertyQualifierName(String) - Method in class org.LexGrid.commonTypes.PropertyQualifier
Sets the value of field 'propertyQualifierName'.
setPropertyQualifierType(String) - Method in class org.LexGrid.commonTypes.PropertyQualifier
Sets the value of field 'propertyQualifierType'.
setPropertyRefCodingScheme(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setPropertyReference(PropertyReference) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'propertyReference'.
setPropertyResolver(PropertyResolver<I>) - Method in class org.lexgrid.loader.processor.EntityPropertyProcessor
Sets the property resolver.
setPropertyResolvers(List<PropertyResolver<Mrconso>>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setPropertyService(PropertyService) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationService
Sets the property service.
setPropertyService(PropertyService) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Sets the property service.
setPropertyService(PropertyService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the property service.
setPropertyService(PropertyService) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
Sets the property service.
setPropertyService(PropertyService) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
Sets the property service.
setPropertyType(String) - Method in class org.LexGrid.commonTypes.Property
Sets the value of field 'propertyType'.
setPropertyType(PropertyTypes) - Method in class org.LexGrid.naming.SupportedProperty
Sets the value of field 'propertyType'.
setPropertyTypeClassifier(Classifier<PropertyDao.PropertyType, String>) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
Sets the property type classifier.
setPropertyTypeOption(String) - Method in class org.LexGrid.LexBIG.DataModel.enums.PropertyType
Sets the value of field 'propertyTypeOption'.
setPropertyUId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the property id.
setPropertyUpdates(Property) - Method in class org.lexevs.dao.database.service.event.property.PropertyUpdateEvent
Sets the property updates.
setPropnamePrimitive(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'propnamePrimitive'.
setPropnameType(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'propnameType'.
setPt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
setPt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
setPt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setPt_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_costart_sym(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_harts_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_icd10_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_icd9_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_icd9cm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_jart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setPt_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_soc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setPt_soc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPt_whoart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
setPtr(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setQualifierListResolvers(List<OptionalPropertyQualifierResolver<List<Mrconso>>>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setQualifierName(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setQualifierName(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
Sets the qualifier name.
setQualifierName(String) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
Sets the qualifier name.
setQualifierResolver(OptionalQualifierResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAsscToEntityMrsatQualsProcessor
 
setQualifierResolver(OptionalQualifierResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnToEQualsProcessor
Sets the qualifier resolver.
setQualifierResolvers(List<OptionalPropertyQualifierResolver<I>>) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
setQualifierResolvers(List<OptionalQualifierResolver<I>>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setQualifierResolvers(List<OptionalQualifierResolver<I>>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setQualifierResolvers(List<OptionalPropertyQualifierResolver<Mrconso>>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setQualifierText(Text) - Method in class org.LexGrid.relations.AssociationQualification
Sets the value of field 'qualifierText'.
setQualifierType(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
 
setQualifierValue(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setQualifierValue(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
Sets the qualifier value.
setQualifierValue(String) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery.QualifierNameValuePair
Sets the qualifier value.
setQueryTimeout(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setRange(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setRank(String) - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
setRcui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setReadOnly(boolean) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setRef(AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaData
 
setRef(int, Ref) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setReferenceAssociation(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setReferenceAssociation(String) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'referenceAssociation'.
setReferencecode(String) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'referencecode'.
setReferencedEntry(Entity) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedConceptReference
Sets the value of field 'referencedEntry'.
setReferenceLink(ReferenceLink) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Sets the value of field 'referenceLink'.
setReferencename(String) - Method in class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent
Sets the value of field 'referencename'.
setReferenceType(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
 
setReferenceType(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setReferenceUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationQualificationOrUsageContextBean
 
setReferenceUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setReflexive(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setReflexivity(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setRefresh(R) - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator.RefreshResult
Sets the refresh.
setRegisteredStagingDatabases(Map<String, Resource>) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
Sets the registered staging databases.
setRegisterSupportedAttributes(boolean) - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Sets the register supported attributes.
setRegistry(Registry) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the registry.
setRegistry(Registry) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
setRegistry(Registry) - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGenerator
 
setRegistry(Registry) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Sets the registry.
setRegistry(Registry) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
setRegistry(Registry) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the registry.
setRegistry(Registry) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the registry.
setRegistryDao(RegistryDao) - Method in class org.lexevs.registry.service.DatabaseRegistry
Sets the registry dao.
setRegistryDao(RegistryDao) - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Sets the registry dao.
setRegistryEntry(RegistryEntry) - Method in class org.lexevs.registry.event.events.TagUpdateEvent
Sets the registry entry.
setRegistryListeners(List<RegistryListener>) - Method in class org.lexevs.registry.event.RegistryEventSupport
Sets the registry listeners.
setRel(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setRel(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setRel(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setRela(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setRela(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setRela(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setRelation(Relations) - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Sets the relation.
setRelation(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the relation.
setRelationContainerName(String) - Method in class org.lexevs.dao.database.service.association.AssociationService.AssociationTriple
Sets the relation container name.
setRelationName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
setRelationNamespace(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the relation namespace.
setRelationResolver(RelationResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
Sets the relation resolver.
setRelationResolver(RelationResolver<I>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
Sets the relation resolver.
setRelations(Relations) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertOrUpdateRelationsBean
Sets the relations.
setRelations(int, Relations) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setRelations(Relations[]) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setRelations(List<Relations>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of '_relationsList' by copying the given Vector.
setRelationsAsReference(List<Relations>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Deprecated. 
setRelationsContainerName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setRelationsContainerName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setRelationsContainerName(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setRelationsContainerName(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setRelationsContainerName(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setRelationsContainerName(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.Association
Sets the value of field 'relationsContainerName'.
setRelationsContainerName(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Sets the relations container name.
setRelationService(RelationService) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
Sets the relation service.
setRelationService(RelationService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the relation service.
setRelationshipKind(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setRelationshipName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setRelationshipName(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.CodedNodeSetBackedMapping.RelationshipRestriction
 
setRelationshipsDefinitionResource(URI) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
setRelationsPropertiesFlag(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
setRelationsPropertiesPresent(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setRelationUId(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertAssociationPredicateBean
Sets the relation id.
setRelationVersion - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is MAPSETVERSION use corresponding ATV from MRSAT
setRelativeOrder(Long) - Method in class org.LexGrid.versions.EntryState
Sets the value of field 'relativeOrder'.
setReleaseAgency(String) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'releaseAgency'.
setReleaseDate(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
setReleaseDate(Date) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'releaseDate'.
setReleaseGuid(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
set system release guid
setReleaseId(String) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'releaseId'.
setReleaseUId(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeBean
 
setReleaseUId(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertSystemReleaseBean
 
setReleaseURI(String) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'releaseURI'.
setReleaseURN(String) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'releaseURN'.
setRemarks(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setRenderingDetail(RenderingDetail) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Sets the value of field 'renderingDetail'.
setReplacedBy(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setReplaceRelation(boolean) - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Sets the replace relation.
setReplaceRelation(boolean) - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Sets the replace relation.
setReplaceRelation(boolean) - Method in interface org.lexgrid.loader.processor.decorator.RootResolvingNodeDecorator
Sets the replace relation.
setRepresentationalForm(String) - Method in class org.LexGrid.concepts.Presentation
Sets the value of field 'representationalForm'.
setRepresentsRealmOrContext(List<String>) - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
setRepresentsRealmOrContext(int, String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setRepresentsRealmOrContext(String[]) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setRepresentsRealmOrContext(List<String>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of '_representsRealmOrContextList' by copying the given Vector.
setRepresentsRealmOrContextAsReference(List<String>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Deprecated. 
setRepresentsValueSetDefinition(String) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of field 'representsValueSetDefinition'.
setRepresentsVersion(String) - Method in class org.lexevs.system.service.CodingSchemeAliasHolder
Sets the represents version.
setRepresentsVersion(String) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of field 'representsVersion'.
setRepresentsVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary
Sets the value of field 'representsVersion'.
setRepresentsVersion(CsmfVersion) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of field 'representsVersion'.
setRepresentsVersion(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'representsVersion'.
setResolutionDetails(String) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
Sets the resolution details.
setResolutionStatus(ErrorResolutionReport.ResolutionStatus) - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
Sets the resolution status.
setResolvedConceptReference(int, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
setResolvedConceptReference(ResolvedConceptReference[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList
 
setResolvedConceptReference(ResolvedConceptReference[]) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
setResolvedConceptReference(int, ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList
 
setResolvedConceptReferenceIterator(ResolvedConceptReferencesIterator) - Method in class org.lexgrid.valuesets.dto.ResolvedValueSetDefinition
 
setResolvedPickListEntry(int, ResolvedPickListEntry) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
setResolvedPickListEntry(ResolvedPickListEntry[]) - Method in class org.lexgrid.valuesets.dto.ResolvedPickListEntryList
 
setResolverProcessor(ResolverProcessor) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.DefaultPagingCodingSchemeInserter
 
setResolverProcessor(ResolverProcessor) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
Sets the resolver processor.
setResource(Resource) - Method in class org.lexgrid.loader.writer.NoClosingRootTagStaxEventItemWriter
 
setResourceManager(ResourceManager) - Method in class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
Sets the resource manager.
setResourceManager(ResourceManager) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Sets the resource manager.
setResourceManager(ResourceManager) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the resource manager.
setResourceManager(ResourceManager) - Method in class org.lexevs.system.constants.SystemVariablesFactory
Sets the resource manager.
setResourceType(Registry.ResourceType) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the resource type.
setResourceUri(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the resource uri.
setResourceUri(URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setResourceUri(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setResourceUri(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
setResourceUri(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
setResourceUri(URI) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
setResourceUriAllowedFileTypes(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
Sets the resource uri allowed file types.
setResourceVersion(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the resource version.
setRestrictToAnonymous(Boolean) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setRestrictToAnonymous(Boolean) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setRestrictToAnonymous(Boolean) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to anonymous.
setRestrictToAssociations(List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to associations.
setRestrictToAssociationsQualifiers(List<GraphQuery.QualifierNameValuePair>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to associations qualifiers.
setRestrictToContext(int, SortContext) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
setRestrictToContext(SortContext[]) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
setRestrictToEntityTypes(List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to entity types.
setRestrictToSourceCodes(List<ConceptReference>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to source codes.
setRestrictToSourceCodeSystem(List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to source code system.
setRestrictToTargetCodes(List<ConceptReference>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to target codes.
setRestrictToTargetCodeSystem(List<String>) - Method in class org.lexevs.dao.database.service.codednodegraph.model.GraphQuery
Sets the restrict to target code system.
setResult(List<? extends T>) - Method in class org.lexevs.paging.AbstractRefereshingPageableIterator.RefreshResult
Sets the result.
setResultsSkipped(boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
setRetry(boolean) - Method in class org.lexgrid.loader.lexbigadmin.IndexingTasklet
 
setRetry(boolean) - Method in class org.lexgrid.loader.lexbigadmin.RegisteringTasklet
 
setRetry(boolean) - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
setRetry(boolean) - Method in class org.lexgrid.loader.staging.DefaultStagingManager
Sets the retry.
setRevAppliedDate(Timestamp) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
 
setReverseName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.AssociationWrapper
 
setReverseName(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.AssociationWrapper
 
setReverseName(String) - Method in class org.lexevs.dao.database.ibatis.entity.parameter.InsertOrUpdateEntityBean
 
setReverseName(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationInfo
 
setReverseName(String) - Method in class org.LexGrid.relations.AssociationEntity
Sets the value of field 'reverseName'.
setRevision(Revision) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
set systemRelease object.
setRevision(int, Revision) - Method in class org.LexGrid.versions.EditHistory
 
setRevision(Revision[]) - Method in class org.LexGrid.versions.EditHistory
 
setRevision(List<Revision>) - Method in class org.LexGrid.versions.EditHistory
Sets the value of '_revisionList' by copying the given Vector.
setRevisionAsReference(List<Revision>) - Method in class org.LexGrid.versions.EditHistory
Deprecated. 
setRevisionDaos(List<RevisionDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setRevisionDate(Date) - Method in class org.LexGrid.versions.Revision
Sets the value of field 'revisionDate'.
setRevisionGuid(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertRevisionBean
 
setRevisionId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
setRevisionId(String) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Sets the revision id.
setRevisionId(String) - Method in class org.LexGrid.versions.Revision
Sets the value of field 'revisionId'.
setRevisionUId(String) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertEntryStateBean
 
setRg(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setRmeta(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setRole(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Sets the role.
setRole(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the role.
setRole(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setRole(String) - Method in class org.LexGrid.commonTypes.Source
Sets the value of field 'role'.
setRootBuilder(RootBuilder) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setRootCode(String) - Method in class org.LexGrid.naming.SupportedHierarchy
Sets the value of field 'rootCode'.
setRootConceptReferenceIterator(RootConceptReferenceIterator) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.model.LazyLoadableResolvedConceptReferenceList.RootResolvedConceptReferenceIterator
 
setRootNodeResolver(RootNodeResolver<O>) - Method in class org.lexgrid.loader.processor.decorator.ListRootNodeAddingDecorator
Sets the root node resolver.
setRootNodeResolver(RootNodeResolver<O>) - Method in class org.lexgrid.loader.processor.decorator.RootNodeAddingDecorator
Sets the root node resolver.
setRootNodeResolver(RootNodeResolver<O>) - Method in interface org.lexgrid.loader.processor.decorator.RootResolvingNodeDecorator
Sets the root node resolver.
setRoots(Set<GraphQuery.CodeNamespacePair>) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
setRowId(int, RowId) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setRrfDir(String) - Method in class org.lexgrid.loader.meta.launch.MetaBatchLoaderLauncher
Sets the rrf dir.
setRrfDir(String) - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Sets the rrf dir.
setRrfDir(String) - Method in class org.lexgrid.loader.umls.launch.MedRtBatchLoaderLauncher
Sets the rrf dir.
setRrfDir(String) - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Sets the rrf dir.
setRrfFile(String) - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Sets the rrf file.
setRrfrelationType(RrfLoaderConstants.RrfRelationType) - Method in class org.lexgrid.loader.meta.processor.support.MetaPropertyLinkResolver
Sets the rrfrelation type.
setRsab(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setRui(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setRuleOrder(Long) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'ruleOrder'.
setSab(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrhier
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setSab(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setSab(String) - Method in class org.lexgrid.loader.rrf.staging.model.CodeSabPair
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.data.codingscheme.MedRTUmlsCodingSchemeIdSetter
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparator
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.processor.MrstyListProcessor
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.reader.support.AbstractSabSkippingPolicy
Sets the sab.
setSab(String) - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicy
Sets the sab.
setSabin(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSatui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setSatui(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setSatui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setSaui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSavedBy(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setSavepoint() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setSavepoint(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setScc(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSchema(String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setSchemaVersion(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setScit(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setScope(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
setScore(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setScore(float) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setScoreDoc(ScoreDoc) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ProxyProtectedScoreDocWrapper
 
setScriptsuffix(String) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Sets the scriptsuffix.
setScriptType(ScriptFactory.ScriptType) - Method in class org.lexevs.dao.database.setup.script.ScriptFactory
Sets the script type.
setScui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSdui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSearchDaos(List<SearchDao>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
setSearchDesignationOptionName(String) - Method in class org.LexGrid.LexBIG.DataModel.enums.SearchDesignationOption
Sets the value of field 'searchDesignationOptionName'.
setSearchIndexService(SearchIndexService) - Method in class org.lexevs.dao.index.service.entity.SearchIndexAwareEntityIndexService
 
setSearchIndexService(SearchIndexService) - Method in class org.lexevs.dao.index.service.IndexServiceManager
 
setSelfReferencingAssociationPolicy(EntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setSelfReferencingAssociationPolicy(MedRtEntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setServiceHandle(ReferenceLink) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering
Sets the value of field 'serviceHandle'.
setSeverity(LoadValidationError.Severity) - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.AbstractError
Sets the severity.
setSf(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setShell(Shell) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
setShort(int, short) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setShortFormProvider(ShortFormProvider) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.MachesterOWLSyntaxLexGridRenderer
 
setShouldCodingSchemeSpecificRestriction(boolean) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
setSkip(boolean) - Method in class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
setSkipPolicy(SkipPolicy<T>) - Method in class org.lexgrid.loader.reader.FactoryBeanReader
Sets the skip policy.
setSkipPolicy(SkipPolicy<I>) - Method in class org.lexgrid.loader.reader.SkippingItemReader
Sets the skip policy.
setSl(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setSlaveGroupItemReader(ItemReader<List<I2>>) - Method in class org.lexgrid.loader.reader.CompositeGroupItemReader
 
setSlc(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSmq_algorithm(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setSmq_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_description(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_level(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_note(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSmq_source(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setSMTPHost(String) - Method in class org.lexevs.logging.SimpleEmailAppender
Sets the sMTP host.
setSoc_abbrev(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setSoc_abbrev(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
setSoc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setSoc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
setSoc_costart_sym(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_harts_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_icd10_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_icd9_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_icd9cm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_jart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
setSoc_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSoc_whoart_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
setSon(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSortClazz(Class<T>) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Sets the sort clazz.
setSortDescription(int, SortDescription) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
setSortDescription(SortDescription[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
setSortingListProcessor(SortingListProcessor<I, O>) - Method in class org.lexgrid.loader.processor.HighestRankingListProcessor
Sets the sorting list processor.
setSortList(List<CodedNodeGraphService.Sort>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setSortOptions(List<SortOption>) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Sets the sort options.
setSorts(List<CodedNodeGraphService.Sort>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsBean
 
setSorts(List<CodedNodeGraphService.Sort>) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setSorts(List<CodedNodeGraphService.Sort>) - Method in class org.lexevs.dao.database.utility.DaoUtility.SortContainer
 
setSource(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
setSource(String) - Method in class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
setSource(AssociationSource) - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Sets the source.
setSource(int, Source) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setSource(Source[]) - Method in class org.LexGrid.codingSchemes.CodingScheme
 
setSource(List<Source>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Sets the value of '_sourceList' by copying the given Vector.
setSource(int, Source) - Method in class org.LexGrid.commonTypes.Property
 
setSource(Source[]) - Method in class org.LexGrid.commonTypes.Property
 
setSource(List<Source>) - Method in class org.LexGrid.commonTypes.Property
Sets the value of '_sourceList' by copying the given Vector.
setSource(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setSource(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setSource(int, CsmfSource) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
setSource(CsmfSource[]) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
setSource(List<CsmfSource>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Sets the value of '_sourceList' by copying the given Vector.
setSource(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the source.
setSource(int, AssociationSource) - Method in class org.LexGrid.relations.AssociationPredicate
 
setSource(AssociationSource[]) - Method in class org.LexGrid.relations.AssociationPredicate
 
setSource(List<AssociationSource>) - Method in class org.LexGrid.relations.AssociationPredicate
Sets the value of '_sourceList' by copying the given Vector.
setSource(List<Source>) - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
setSource(int, Source) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setSource(Source[]) - Method in class org.LexGrid.valueSets.PickListDefinition
 
setSource(List<Source>) - Method in class org.LexGrid.valueSets.PickListDefinition
Sets the value of '_sourceList' by copying the given Vector.
setSource(int, Source) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setSource(Source[]) - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
setSource(List<Source>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of '_sourceList' by copying the given Vector.
setSourceAbbreviationsResource(URI) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
setSourceAsReference(List<Source>) - Method in class org.LexGrid.codingSchemes.CodingScheme
Deprecated. 
setSourceAsReference(List<Source>) - Method in class org.LexGrid.commonTypes.Property
Deprecated. 
setSourceAsReference(List<CsmfSource>) - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
Deprecated. 
setSourceAsReference(List<AssociationSource>) - Method in class org.LexGrid.relations.AssociationPredicate
Deprecated. 
setSourceAsReference(List<Source>) - Method in class org.LexGrid.valueSets.PickListDefinition
Deprecated. 
setSourceAsReference(List<Source>) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Deprecated. 
setSourceCode(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
setSourceCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setSourceCode(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setSourceCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Sets the source coding scheme.
setSourceCodingScheme(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'sourceCodingScheme'.
setSourceCodingSchemeName(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Sets the source coding scheme name.
setSourceCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setSourceCodingSchemeVersion(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'sourceCodingSchemeVersion'.
setSourceConcept(Concept) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
setSourceConceptReferences(List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
setSourceDescription(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setSourceEntityCode(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets the source entity code.
setSourceEntityCode(String) - Method in class org.lexevs.dao.database.access.association.model.Triple
 
setSourceEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Sets the source entity code.
setSourceEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the source entity code.
setSourceEntityCode(String) - Method in class org.LexGrid.relations.AssociationSource
Sets the value of field 'sourceEntityCode'.
setSourceEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets the source entity code namespace.
setSourceEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Sets the source entity code namespace.
setSourceEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the source entity code namespace.
setSourceEntityCodeNamespace(String) - Method in class org.LexGrid.relations.AssociationSource
Sets the value of field 'sourceEntityCodeNamespace'.
setSourceEntityNamespace(String) - Method in class org.lexevs.dao.database.access.association.model.Triple
 
setSourceName(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setSourceNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setSourceNamespace(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the source namespace.
setSourceOf(AssociationList) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'sourceOf'.
setSourceOrTargetConceptReferences(List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
setSourcePrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.SourceAndTargetMappingPrefixedParameter
 
setSourceProperty(String) - Method in class org.LexGrid.concepts.PropertyLink
Sets the value of field 'sourceProperty'.
setSourcePropertyIdResolver(PropertyIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setSourcePropertyIdResolver(PropertyIdResolver<I>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setSourcePropertyUId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Sets the source property id.
setSourceResolvers(List<SourceResolver<I>>) - Method in class org.lexgrid.loader.processor.decorator.EntityPropertyQualifierAndSourceAddingDecorator
 
setSourceResolvers(List<SourceResolver<Mrconso>>) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setSources(List<? extends AssociationSource>) - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Sets the sources.
setSourceScheme(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the source scheme.
setSourceSchemePrefix(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setSourceSchemeUri(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setSourceSchemeVersion(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setSqlImplementedMethodsDao(SQLImplementedMethodsDao) - Method in class org.lexevs.dao.database.sqlimplementedmethods.AbstraceSqlImplementedMethodsDao
Sets the sql implemented methods dao.
setSQLLoggingEnabled(boolean) - Method in class org.lexevs.system.constants.SystemVariables
 
setSqlMapClientTemplate(SqlMapClientTemplate) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Sets the sql map client template.
setSqlMapClientTemplate(SqlMapClientTemplate) - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapClientTemplateInserter
Sets the sql map client template.
setSqlMapExecutor(SqlMapExecutor) - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
Sets the sql map executor.
setSQLXML(int, SQLXML) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setSrl(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSrl(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSrui(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setSsn(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setStagingManager(StagingManager) - Method in class org.lexgrid.loader.listener.CleanupListener
Sets the staging manager.
setStagingPrefix(String) - Method in class org.lexevs.registry.model.RegistryEntry
 
setStartTime(Date) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'startTime'.
setState(ProcessState) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'state'.
setStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptContainer
 
setStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
setStatus(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
setStatus(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the status.
setStatus(String) - Method in class org.LexGrid.commonTypes.Versionable
Sets the value of field 'status'.
setStatus(LoadStatus) - Method in class org.LexGrid.LexBIG.gui.load.ManifestLoader
 
setStatus(LoadStatus) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
setStatusMonitor(StyledText, StatusReporter) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
setStatusPending(XmlRegistry.DBEntry) - Method in class org.lexevs.registry.service.XmlRegistry
Sets the status pending.
setStn(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setStopOnErrors(boolean) - Method in class org.lexgrid.loader.lexbigadmin.MetadataLoadingTasklet
Sets the stop on errors.
setStr(String) - Method in class org.lexgrid.exporter.owlrdf.StringHelper
 
setStr(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setStream(URI) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
setStream(BufferedReader) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
setStream(URL) - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
setStreamingOn(boolean) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
setStrictFocusValidation(boolean) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
setStrictOWLImplementation(Boolean) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'strictOWLImplementation'.
setString(int, String) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setStringArrayOptions(List<MultiValueOption<String>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
setStringOptions(List<Option<String>>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
Sets the string options.
setStt(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSty(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setStype(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setStype(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setStype1(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setStype2(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setSubclassAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSubclassAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSubcodesAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSubcodesAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSubject(String) - Method in class org.lexevs.logging.SimpleEmailAppender
Sets the subject.
setSubref(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
setSubRef(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateCodingSchemeMultiAttribBean
Sets the sub ref.
setSubRef(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyMultiAttribBean
Sets the sub ref.
setSubRef(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateValueSetsMultiAttribBean
 
setSubRef(String) - Method in class org.LexGrid.commonTypes.Source
Sets the value of field 'subRef'.
setSubset(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
setSui(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setSui(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setSuperclassAssoc(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSuperclassAssocReverse(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setSupplementsUri(String) - Method in class org.lexevs.registry.model.RegistryEntry
 
setSupplementsVersion(String) - Method in class org.lexevs.registry.model.RegistryEntry
 
setSupportedAssociation(int, SupportedAssociation) - Method in class org.LexGrid.naming.Mappings
 
setSupportedAssociation(SupportedAssociation[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedAssociation(List<SupportedAssociation>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedAssociationList' by copying the given Vector.
setSupportedAssociationAsReference(List<SupportedAssociation>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedAssociationQualifier(int, SupportedAssociationQualifier) - Method in class org.LexGrid.naming.Mappings
 
setSupportedAssociationQualifier(SupportedAssociationQualifier[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedAssociationQualifier(List<SupportedAssociationQualifier>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedAssociationQualifierList' by copying the given Vector.
setSupportedAssociationQualifierAsReference(List<SupportedAssociationQualifier>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedAttributeTag(String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Sets the supported attribute tag.
setSupportedAttributeTemplate(SupportedAttributeTemplate) - Method in class org.lexgrid.loader.dao.SupportedAttributeSupport
Sets the supported attribute template.
setSupportedAttributeTemplate(SupportedAttributeTemplate) - Method in class org.lexgrid.loader.processor.AbstractSupportedAttributeRegisteringProcessor
Sets the supported attribute template.
setSupportedAttributeTemplate(SupportedAttributeTemplate) - Method in class org.lexgrid.loader.processor.support.AbstractRootNodeResolver
 
setSupportedAttributeTemplate(SupportedAttributeTemplate) - Method in class org.lexgrid.loader.rrf.processor.MrconsoGroupEntityProcessor
 
setSupportedAttributeTemplate(SupportedAttributeTemplate) - Method in class org.lexgrid.loader.rrf.processor.MrdocAssociationProcessor
Sets the supported attribute template.
setSupportedCodingScheme(int, SupportedCodingScheme) - Method in class org.LexGrid.naming.Mappings
 
setSupportedCodingScheme(SupportedCodingScheme[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedCodingScheme(List<SupportedCodingScheme>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedCodingSchemeList' by copying the given Vector.
setSupportedCodingSchemeAsReference(List<SupportedCodingScheme>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedConceptDomain(int, SupportedConceptDomain) - Method in class org.LexGrid.naming.Mappings
 
setSupportedConceptDomain(SupportedConceptDomain[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedConceptDomain(List<SupportedConceptDomain>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedConceptDomainList' by copying the given Vector.
setSupportedConceptDomainAsReference(List<SupportedConceptDomain>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedConceptPropertiesMap(HashMap<String, MifSupportedConceptProperty>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
setSupportedConceptPropertiesMap(HashMap<String, MifSupportedConceptProperty>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setSupportedConceptRelationshipsMap(HashMap<String, MifSupportedConceptRelationship>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
setSupportedConceptRelationshipsMap(HashMap<String, MifSupportedConceptRelationship>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setSupportedContainerName(int, SupportedContainerName) - Method in class org.LexGrid.naming.Mappings
 
setSupportedContainerName(SupportedContainerName[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedContainerName(List<SupportedContainerName>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedContainerNameList' by copying the given Vector.
setSupportedContainerNameAsReference(List<SupportedContainerName>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedContext(int, SupportedContext) - Method in class org.LexGrid.naming.Mappings
 
setSupportedContext(SupportedContext[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedContext(List<SupportedContext>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedContextList' by copying the given Vector.
setSupportedContextAsReference(List<SupportedContext>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedDataType(int, SupportedDataType) - Method in class org.LexGrid.naming.Mappings
 
setSupportedDataType(SupportedDataType[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedDataType(List<SupportedDataType>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedDataTypeList' by copying the given Vector.
setSupportedDataTypeAsReference(List<SupportedDataType>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedDegreeOfFidelity(int, SupportedDegreeOfFidelity) - Method in class org.LexGrid.naming.Mappings
 
setSupportedDegreeOfFidelity(SupportedDegreeOfFidelity[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedDegreeOfFidelity(List<SupportedDegreeOfFidelity>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedDegreeOfFidelityList' by copying the given Vector.
setSupportedDegreeOfFidelityAsReference(List<SupportedDegreeOfFidelity>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedElement(int, SupportedElement) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
setSupportedElement(SupportedElement[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
setSupportedEntityType(int, SupportedEntityType) - Method in class org.LexGrid.naming.Mappings
 
setSupportedEntityType(SupportedEntityType[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedEntityType(List<SupportedEntityType>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedEntityTypeList' by copying the given Vector.
setSupportedEntityTypeAsReference(List<SupportedEntityType>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedHierarchy(int, SupportedHierarchy) - Method in class org.LexGrid.naming.Mappings
 
setSupportedHierarchy(SupportedHierarchy[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedHierarchy(List<SupportedHierarchy>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedHierarchyList' by copying the given Vector.
setSupportedHierarchyAsReference(List<SupportedHierarchy>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedHierarchyAssociationsTransitive(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
setSupportedIdMappings(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setSupportedIdSpaceMappings(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setSupportedLanguage(int, SupportedLanguage) - Method in class org.LexGrid.naming.Mappings
 
setSupportedLanguage(SupportedLanguage[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedLanguage(List<SupportedLanguage>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedLanguageList' by copying the given Vector.
setSupportedLanguageAsReference(List<SupportedLanguage>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedLanguages(List<String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
setSupportedNamespace(int, SupportedNamespace) - Method in class org.LexGrid.naming.Mappings
 
setSupportedNamespace(SupportedNamespace[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedNamespace(List<SupportedNamespace>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedNamespaceList' by copying the given Vector.
setSupportedNamespaceAsReference(List<SupportedNamespace>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedProperty(int, SupportedProperty) - Method in class org.LexGrid.naming.Mappings
 
setSupportedProperty(SupportedProperty[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedProperty(List<SupportedProperty>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedPropertyList' by copying the given Vector.
setSupportedPropertyAsReference(List<SupportedProperty>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedPropertyLink(int, SupportedPropertyLink) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyLink(SupportedPropertyLink[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyLink(List<SupportedPropertyLink>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedPropertyLinkList' by copying the given Vector.
setSupportedPropertyLinkAsReference(List<SupportedPropertyLink>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedPropertyQualifier(int, SupportedPropertyQualifier) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyQualifier(SupportedPropertyQualifier[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyQualifier(List<SupportedPropertyQualifier>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedPropertyQualifierList' by copying the given Vector.
setSupportedPropertyQualifierAsReference(List<SupportedPropertyQualifier>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedPropertyQualifierType(int, SupportedPropertyQualifierType) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyQualifierType(SupportedPropertyQualifierType[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyQualifierType(List<SupportedPropertyQualifierType>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedPropertyQualifierTypeList' by copying the given Vector.
setSupportedPropertyQualifierTypeAsReference(List<SupportedPropertyQualifierType>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedPropertyType(int, SupportedPropertyType) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyType(SupportedPropertyType[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedPropertyType(List<SupportedPropertyType>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedPropertyTypeList' by copying the given Vector.
setSupportedPropertyTypeAsReference(List<SupportedPropertyType>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedRepresentationalForm(int, SupportedRepresentationalForm) - Method in class org.LexGrid.naming.Mappings
 
setSupportedRepresentationalForm(SupportedRepresentationalForm[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedRepresentationalForm(List<SupportedRepresentationalForm>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedRepresentationalFormList' by copying the given Vector.
setSupportedRepresentationalFormAsReference(List<SupportedRepresentationalForm>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedSortOrder(int, SupportedSortOrder) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSortOrder(SupportedSortOrder[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSortOrder(List<SupportedSortOrder>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedSortOrderList' by copying the given Vector.
setSupportedSortOrderAsReference(List<SupportedSortOrder>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedSource(int, SupportedSource) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSource(SupportedSource[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSource(List<SupportedSource>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedSourceList' by copying the given Vector.
setSupportedSourceAsReference(List<SupportedSource>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedSourceRole(int, SupportedSourceRole) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSourceRole(SupportedSourceRole[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedSourceRole(List<SupportedSourceRole>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedSourceRoleList' by copying the given Vector.
setSupportedSourceRoleAsReference(List<SupportedSourceRole>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedStatus(int, SupportedStatus) - Method in class org.LexGrid.naming.Mappings
 
setSupportedStatus(SupportedStatus[]) - Method in class org.LexGrid.naming.Mappings
 
setSupportedStatus(List<SupportedStatus>) - Method in class org.LexGrid.naming.Mappings
Sets the value of '_supportedStatusList' by copying the given Vector.
setSupportedStatusAsReference(List<SupportedStatus>) - Method in class org.LexGrid.naming.Mappings
Deprecated. 
setSupportedSubsets(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setSupportedSynonyms(Vector<String>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setSuppress(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
setSuppress(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setSuppress(String) - Method in class org.lexgrid.loader.rrf.model.Mrdef
 
setSuppress(String) - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
setSuppress(String) - Method in class org.lexgrid.loader.rrf.model.Mrrel
 
setSuppress(String) - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
setSvc(LexBIGService) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
setSver(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setSymmetric(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setSymmetry(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setSynonyms(Vector<OBOSynonym>) - Method in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
setSysRelBasedOnRelease(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSysRelEntityDescription(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSysRelReleaseAgency(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSysRelReleaseDate(String, Date) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSysRelReleaseID(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSysRelReleaseURN(String, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.HistoryLoadDBUtil
 
setSystemEventListeners(List<SystemEventListener>) - Method in class org.lexevs.system.event.SystemEventSupport
 
setSystemRelease(SystemRelease) - Method in class org.lexevs.dao.database.ibatis.versions.parameter.InsertSystemReleaseBean
set systemRelease object.
setSystemRelease(int, SystemRelease) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
setSystemRelease(SystemRelease[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
setSystemReleaseDao(SystemReleaseDao) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
setSystemReleaseDao(SystemReleaseDao) - Method in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
 
setSystemReleaseDaos(List<SystemReleaseDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setSystemReleaseMetaData(SystemRelease) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setSystemReleaseUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
Sets the system release id.
setSystemReleaseUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
Sets the system release id.
setSystemResourceService(SystemResourceService) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.AbstractCodingSchemeInserter
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilder
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.access.IndexDaoManager
Sets the system resource service.
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Sets the system resource service.
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Sets the system resource service.
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
setSystemResourceService(SystemResourceService) - Method in class org.lexevs.locator.LexEvsServiceLocator
Sets the system resource service.
setSystemVariables(SystemVariables) - Method in class org.lexevs.cache.AbstractMethodCachingBean
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.cache.CacheConfigLocationFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.prefix.DefaultPrefixResolver
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.scheme.CurrentPersistenceSchemeVersionFactory
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.setup.schemacheck.AbstractLesGridSchemaCheck
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.setup.schemacheck.LexGridSchemaCheckFactory
Sets the prefix resolver.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.database.utility.JdbcDriverBootstrap
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.factory.AssertedValueSetIndexLocationFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.factory.IndexerServiceFactory
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.factory.IndexLocationFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.factory.MetadataIndexLocationFactory
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.indexer.EntityBatchingIndexCreator
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.dao.index.lucenesupport.LazyLoadMetaData
 
setSystemVariables(SystemVariables) - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the system variables.
setSystemVariables(SystemVariables) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
Sets the system variables.
setTableMetadataDao(TableMetadataDao) - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionFactory
Sets the table metadata dao.
setTableName(String) - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
Sets the table name.
setTableName(String) - Method in class org.lexgrid.loader.rrf.staging.tasklet.LoadInfileMrconsoStagingTablePopulator
Sets the table name.
setTag(String) - Method in class org.lexevs.registry.model.RegistryEntry
Sets the tag.
setTag(int, String) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
setTag(String[]) - Method in class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList
 
setTag(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
Sets the value of field 'tag'.
setTarget(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setTarget(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the target.
setTarget(int, AssociationTarget) - Method in class org.LexGrid.relations.AssociationSource
 
setTarget(AssociationTarget[]) - Method in class org.LexGrid.relations.AssociationSource
 
setTarget(List<AssociationTarget>) - Method in class org.LexGrid.relations.AssociationSource
Sets the value of '_targetList' by copying the given Vector.
setTargetAsReference(List<AssociationTarget>) - Method in class org.LexGrid.relations.AssociationSource
Deprecated. 
setTargetCode(int) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7AssocContainer
 
setTargetCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setTargetCode(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setTargetCodeSystemId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setTargetCodingScheme(AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Sets the target coding scheme.
setTargetCodingScheme(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'targetCodingScheme'.
setTargetCodingSchemeName(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.mapping.AbstractMappingTripleIterator.MappingAbsoluteCodingSchemeVersionReferences
Sets the target coding scheme name.
setTargetCodingSchemeUid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setTargetCodingSchemeVersion(String) - Method in class org.LexGrid.relations.Relations
Sets the value of field 'targetCodingSchemeVersion'.
setTargetConceptCode(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setTargetConceptReferences(List<ConceptReference>) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.RestrictingMappingTripleParameterBean
 
setTargetConceptSet(List<Concept>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
setTargetData(int, AssociationData) - Method in class org.LexGrid.relations.AssociationSource
 
setTargetData(AssociationData[]) - Method in class org.LexGrid.relations.AssociationSource
 
setTargetData(List<AssociationData>) - Method in class org.LexGrid.relations.AssociationSource
Sets the value of '_targetDataList' by copying the given Vector.
setTargetDataAsReference(List<AssociationData>) - Method in class org.LexGrid.relations.AssociationSource
Deprecated. 
setTargetDescription(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setTargetEntityCode(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets the target entity code.
setTargetEntityCode(String) - Method in class org.lexevs.dao.database.access.association.model.Triple
 
setTargetEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Sets the target entity code.
setTargetEntityCode(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the target entity code.
setTargetEntityCode(String) - Method in class org.LexGrid.relations.AssociationTarget
Sets the value of field 'targetEntityCode'.
setTargetEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
Sets the target entity code namespace.
setTargetEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetNodesPathBean
Sets the target entity code namespace.
setTargetEntityCodeNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.InsertTransitiveClosureBean
Sets the target entity code namespace.
setTargetEntityCodeNamespace(String) - Method in class org.LexGrid.relations.AssociationTarget
Sets the value of field 'targetEntityCodeNamespace'.
setTargetEntityNamespace(String) - Method in class org.lexevs.dao.database.access.association.model.Triple
 
setTargetName(String) - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
setTargetNamespace(String) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setTargetNamespace(String) - Method in class org.lexgrid.loader.wrappers.RelationHolder
Sets the target namespace.
setTargetOf(AssociationList) - Method in class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference
Sets the value of field 'targetOf'.
setTargetPrefix(String) - Method in class org.lexevs.dao.database.ibatis.parameter.SourceAndTargetMappingPrefixedParameter
 
setTargetProperty(String) - Method in class org.LexGrid.concepts.PropertyLink
Sets the value of field 'targetProperty'.
setTargetPropertyIdResolver(PropertyIdResolver<I>) - Method in class org.lexgrid.loader.processor.EntityAssnsToEntityProcessor
 
setTargetPropertyIdResolver(PropertyIdResolver<I>) - Method in class org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor
 
setTargetPropertyUId(String) - Method in class org.lexevs.dao.database.ibatis.property.parameter.InsertPropertyLinkBean
Sets the target property id.
setTargetSchemePrefix(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDao.MappingTripleParameterBean
 
setTargetSchemeUri(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setTargetSchemeVersion(String) - Method in class org.lexevs.dao.database.access.association.model.graphdb.GraphDbTriple
 
setTargetToSource(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setTargetToSource(Boolean) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'targetToSource'.
setTerm_addition_version(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setTerm_addition_version(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_category(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setTerm_code(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_last_modified_version(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_level(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_name(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setTerm_scope(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_status(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setTerm_type(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
setTerm_weight(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
setText(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifPrintName
 
setText(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
setTfr(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setTime(int, Time) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setTime(int, Time, Calendar) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setTimestamp(int, Timestamp) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setTimestamp(int, Timestamp, Calendar) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setTitle(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setTitle(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setTo(String) - Method in class org.lexevs.logging.SimpleEmailAppender
Sets the to.
setToAdd(Boolean) - Method in class org.LexGrid.LexOnt.CsmfLocalName
Sets the value of field 'toAdd'.
setToexpr(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setToid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfFormalName
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfText
Sets the value of field 'toOverride'.
setToOverride(Boolean) - Method in class org.LexGrid.LexOnt.CsmfVersion
Sets the value of field 'toOverride'.
setTores(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setTorule(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setTosid(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setTotype(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
setToUpdate(Boolean) - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Sets the value of field 'toUpdate'.
setToUpdate(Boolean) - Method in class org.LexGrid.LexOnt.CsmfMappings
Sets the value of field 'toUpdate'.
setToUpdate(Boolean) - Method in class org.LexGrid.LexOnt.CsmfSource
Sets the value of field 'toUpdate'.
setTransactionIsolation(int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setTransactionManager(PlatformTransactionManager) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
Sets the transaction manager.
setTransformer(Transformer<AssociationList, List<LexEvsTreeNode>>) - Method in class org.lexevs.tree.dao.pathtoroot.LexEvsPathToRootResolver
Deprecated.
Sets the transformer.
setTransformer(Transformer<AssociationList, List<LexEvsTreeNode>>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.pathtoroot.LexEvsPathToRootResolver
Sets the transformer.
setTransitive(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setTransitiveClosure(Boolean) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setTransitiveClosure(Boolean) - Method in class org.LexGrid.valueSets.EntityReference
Sets the value of field 'transitiveClosure'.
setTransitiveInverseAssociatinNames(TransitiveInverseAssociatinNames) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'transitiveInverseAssociatinNames'.
setTransitiveInverseAssociationNames(TransitiveInverseAssociatinNames) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setTransitiveNormalAssociationNames(TransitiveNormalAssociationNames) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.PreferenceManager
 
setTransitiveNormalAssociationNames(TransitiveNormalAssociationNames) - Method in class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences
Sets the value of field 'transitiveNormalAssociationNames'.
setTransitivity(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptRelationship
 
setTransitivityBuilder(TransitivityBuilder) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setTripleNode(CodedNodeGraphDao.TripleNode) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetEntityAssnUidsCountBean
 
setTripleUid(String) - Method in class org.lexevs.dao.database.ibatis.codednodegraph.model.TripleUidReferencingResolvedConceptReference
 
setTruncator(Truncator) - Method in class org.lexgrid.loader.writer.decorator.FieldTruncatingWriterDecorator
Sets the truncator.
setTs(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setTty(String) - Method in class org.lexgrid.loader.rrf.model.Mrconso
 
setTty(String) - Method in class org.lexgrid.loader.rrf.model.Mrrank
 
setTtyl(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setTui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsty
 
setType(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifSupportedConceptProperty
 
setType(String) - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
setTypeMap(Map<String, Class<?>>) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
setTypeName(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOSynonym
 
setUId(String) - Method in class org.lexevs.dao.database.ibatis.parameter.IdableParameterBean
Sets the id.
setUnaddedChildrenPresent(boolean) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
setUnicodeStream(int, InputStream, int) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated. 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexCreation
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexSupport
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetTagTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.CleanUpResolvedValueSetUpdateLoads
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformerTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
setUp() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.LoadAndUpdateSourceAssertedValueSetsTest
 
setUp() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGridTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.ContentScrubberTestIT
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
Sets the up lbs.
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
Builds the test entity.
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Builds the test entity.
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyHierarchyRootsTestIT
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
Builds the test entity.
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
Sets the up lbs.
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.HierarchyRootsTestIT
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAHistoryPropsAndQualsTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAToLexGridTest
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
setUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWLUnitTests
 
setUp() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
setUp() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
setUp() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
setUp() - Method in class org.lexevs.dao.index.indexer.SourceAssertedIndexerTest
 
setUp() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetDaoTest
 
setUp() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateIndexTest
 
setUp() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateMultipleIndexesTest
 
setUp() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsWriteOverIndexTest
 
setUp() - Method in class org.lexevs.dao.index.operation.ManifestLoadWithAssociationTest
 
setUp() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
setUp() - Static method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
setUp() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexCapabilitiesTest
 
setUp() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexQueryTest
 
setUp() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
setUp() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
setUp() - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
setUp() - Method in class org.LexGrid.LexBIG.admin.TestAdminUtilDisplayAndLog
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtilityTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.ResourceManagerTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturnTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.History.URIBasedHistoryServiceTest
 
setUp() - Method in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
setUp() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
setUp() - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolverTest
Sets the up.
setUp() - Method in class org.lexgrid.loader.rrf.data.association.MrrelRuiKeyResolverTest
Sets the up.
setUp() - Method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitionerTest
Sets the up.
setUp() - Method in class org.lexgrid.loader.rrf.partition.RrfFilePartitionerTest
Sets the up.
setUp() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCleanupIndexesTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateIndexTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateMultipleIndexesTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsWriteOverIndexTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.OrphanedIndexTest
 
setUpBeforeClass() - Static method in class org.lexevs.dao.index.operation.SameSessionLoadandQueryTest
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.codeSystemView.CodeSystemLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.CodingSchemeReferenceLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.EntityReferenceLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PickListLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyQualifierLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyReferenceLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
setupColumns(Table) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
setUpdateDate(String) - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
setUpdatedCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.event.codingscheme.CodingSchemeUpdateEvent
Sets the updated coding scheme.
setUpIterator() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
setUpIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
setUpLexEvsDbSchema() - Method in interface org.lexevs.registry.setup.LexEvsDatabaseSchemaSetup
 
setUpLexEvsDbSchema() - Method in class org.lexevs.registry.setup.LexEvsSchemaInstallationSetup
 
SetupListener - Class in org.lexgrid.loader.listener
The listener interface for receiving setup events.
SetupListener() - Constructor for class org.lexgrid.loader.listener.SetupListener
 
SetupListenerTest - Class in org.lexgrid.loader.listener
 
SetupListenerTest() - Constructor for class org.lexgrid.loader.listener.SetupListenerTest
 
setUri(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setUri(String) - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
setUri(String) - Method in class org.LexGrid.naming.URIMap
Sets the value of field 'uri'.
setUriMap(URIMap) - Method in class org.lexevs.dao.database.ibatis.codingscheme.parameter.InsertOrUpdateURIMapBean
Sets the uri map.
setUriOptions(List<URIOption>) - Method in class edu.mayo.informatics.lexgrid.convert.options.DefaultOptionHolder
 
setURL(int, URL) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
setUrlAppendString(String) - Method in class org.lexevs.dao.database.jdbc.MysqlJdbcUrlAppendingFactory
 
setUsageAssociationQualifier(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.config.ClaMLConfig
 
setUsageContext(int, String) - Method in class org.LexGrid.commonTypes.Property
 
setUsageContext(String[]) - Method in class org.LexGrid.commonTypes.Property
 
setUsageContext(List<String>) - Method in class org.LexGrid.commonTypes.Property
Sets the value of '_usageContextList' by copying the given Vector.
setUsageContext(int, String) - Method in class org.LexGrid.relations.AssociatableElement
 
setUsageContext(String[]) - Method in class org.LexGrid.relations.AssociatableElement
 
setUsageContext(List<String>) - Method in class org.LexGrid.relations.AssociatableElement
Sets the value of '_usageContextList' by copying the given Vector.
setUsageContextAsReference(List<String>) - Method in class org.LexGrid.commonTypes.Property
Deprecated. 
setUsageContextAsReference(List<String>) - Method in class org.LexGrid.relations.AssociatableElement
Deprecated. 
setUsed(boolean) - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
setUserMetaData(Map<String, String>) - Method in class org.LexGrid.LexBIG.gui.CodeSystemUserMetaData
 
setUseTransitive(boolean) - Method in class org.lexevs.dao.database.ibatis.association.parameter.GetCodeRelationshipsBean
 
setValidationProcessor(ValidationProcessor<CodingScheme>) - Method in class edu.mayo.informatics.lexgrid.convert.inserter.PreValidatingInserterDecorator
Sets the validation processor.
setValidator(Validator<O>) - Method in class org.lexgrid.loader.processor.decorator.ListPostProcessorValidatingDecorator
Sets the validator.
setValidator(Validator<O>) - Method in class org.lexgrid.loader.processor.decorator.PostProcessorValidatingDecorator
Sets the validator.
setValue(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
setValue(String) - Method in class org.lexevs.dao.database.access.association.model.InstanceToGuid
 
setValue(Text) - Method in class org.LexGrid.commonTypes.Property
Sets the value of field 'value'.
setValue(Text) - Method in class org.LexGrid.commonTypes.PropertyQualifier
Sets the value of field 'value'.
setValue(String) - Method in enum org.LexGrid.commonTypes.types.EntityTypes
 
setValue(String) - Method in enum org.LexGrid.commonTypes.types.PropertyTypes
 
setValue(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty
Sets the value of field 'value'.
setValue(String) - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
 
setValue(String) - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
 
setValue(String) - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
 
setValue(String) - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
 
setValue(String) - Method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
 
setValue(String) - Method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
 
setValue(String) - Method in class org.lexgrid.loader.rrf.model.Mrdoc
 
setValue(String) - Method in class org.lexgrid.loader.staging.support.KeyValuePair
Sets the value.
setValue(String) - Method in enum org.LexGrid.valueSets.types.DefinitionOperator
 
setValue(String) - Method in enum org.LexGrid.versions.types.ChangeType
 
setValues(Mrconso, PreparedStatement) - Method in class org.lexgrid.loader.rrf.fieldsetter.MrconsoFieldSetter
 
setValues(KeyValuePair, PreparedStatement) - Method in class org.lexgrid.loader.staging.fieldsetter.KeyValueFieldSetter
 
setValueSetDefinition(ValueSetDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
setValueSetDefinition(ValueSetDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
Sets the value set definition.
setValueSetDefinition(int, ValueSetDefinition) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
setValueSetDefinition(ValueSetDefinition[]) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
setValueSetDefinition(List<ValueSetDefinition>) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Sets the value of '_valueSetDefinitionList' by copying the given Vector.
setValueSetDefinitionAsReference(List<ValueSetDefinition>) - Method in class org.LexGrid.valueSets.ValueSetDefinitions
Deprecated. 
setValueSetDefinitionDaos(List<ValueSetDefinitionDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setValueSetDefinitionGuid(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
setValueSetDefinitionName(String) - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
setValueSetDefinitionName(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'valueSetDefinitionName'.
setValueSetDefinitionReference(ValueSetDefinitionReference) - Method in class org.LexGrid.valueSets.DefinitionEntry
Sets the value of field 'valueSetDefinitionReference'.
setValueSetDefinitionRevisionId(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setValueSetDefinitionRevisionId(String) - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
setValueSetDefinitions(ValueSetDefinition[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
setValueSetDefinitions(ValueSetDefinition[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
setValueSetDefinitions(ValueSetDefinitions) - Method in class org.LexGrid.versions.SystemRelease
Sets the value of field 'valueSetDefinitions'.
setValueSetDefinitionService(ValueSetDefinitionService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the value set definition service.
setValueSetDefinitionService(ValueSetDefinitionService) - Method in class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
Sets the value set definition service.
setValueSetDefinitionURI(URI) - Method in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
setValueSetDefinitionURI(URI) - Method in class org.lexgrid.loader.TransformValueSetDefinitionToCodingScheme
 
setValueSetDefinitionURI(URI) - Method in class org.lexgrid.valuesets.dto.VSDSummary
 
setValueSetDefinitionURI(String) - Method in class org.LexGrid.valueSets.ValueSetDefinition
Sets the value of field 'valueSetDefinitionURI'.
setValueSetDefinitionURI(String) - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
Sets the value of field 'valueSetDefinitionURI'.
setValueSetDefReference(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setValueSetDefUId(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdateDefinitionEntryBean
 
setValueSetEntityDaos(List<ValueSetEntityDao>) - Method in class org.lexevs.dao.index.access.IndexDaoManager
 
setvalueSetHierarchyDaos(List<ValueSetHierarchyDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setValueSetHierarchyService(ValueSetHierarchyService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
 
setValueSetHistoryXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setValueSetService(AssertedValueSetService) - Method in class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
setValueSetXmlDdl(Resource) - Method in class org.lexevs.dao.database.operation.DefaultLexEvsDatabaseOperations
 
setVariableName(String) - Method in class org.lexevs.system.constants.IndividualVariableFactory
Sets the variable name.
setVcui(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setVend(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setVersion(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
setVersion(String) - Method in class org.lexevs.dao.database.ibatis.tablemetadata.parameter.InsertTableMetadataBean
Sets the version.
setVersion(String) - Method in class org.lexevs.dao.database.service.event.association.AssociationBatchInsertEvent
Sets the version.
setVersion(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityBatchInsertEvent
Sets the version.
setVersion(String) - Method in class org.lexevs.dao.database.service.event.entity.EntityInsertOrRemoveEvent
Sets the version.
setVersion(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
setVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag
Sets the value of field 'version'.
setVersion(String) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription
Sets the value of field 'version'.
setVersion(String) - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
setVersion(String) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
Sets the version.
setVersion(String) - Method in class org.lexgrid.loader.wrappers.CodingSchemeUriVersionPair
 
setVersion(String) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'version'.
setVersionableDaos(List<T>) - Method in class org.lexevs.dao.database.access.factory.DaoFactory
Sets the versionable daos.
setVersionDate(Date) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'versionDate'.
setVersionOrder(Long) - Method in class org.LexGrid.versions.EntityVersion
Sets the value of field 'versionOrder'.
setVersionOrTag(CodingSchemeVersionOrTag) - Method in class org.lexevs.tree.model.LexEvsTree
Deprecated.
Sets the version or tag.
setVersionOrTag(CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Extensions.Generic.CodingSchemeReference
 
setVersionOrTag(CodingSchemeVersionOrTag) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTree
Sets the version or tag.
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Sets the versions dao.
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
Sets the versions dao.
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
setVersionsDao(VersionsDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
Sets the versions dao.
setVersionsDaos(List<VersionsDao>) - Method in class org.lexevs.dao.database.access.DaoManager
Sets the versions daos.
setVersionStatus(CodingSchemeVersionStatus) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Sets the value of field 'versionStatus'.
setVersionTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
setVersionTag(AbsoluteCodingSchemeVersionReference, String) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Assign a symbolic tag to a specified coding scheme version.
setVersionTags(CodingSchemeTagList) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail
Sets the value of field 'versionTags'.
setVisible(boolean) - Method in class org.LexGrid.LexBIG.gui.logging.LogViewer
 
setVisible(boolean) - Method in class org.LexGrid.LexBIG.gui.logging.LogViewerOptions
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystemVersion
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConcept
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptCode
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptProperty
 
setVmCombinedId(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifConceptRelationship
 
setVmSchemaVersion(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifCodeSystem
 
setVocabularyModel(MifVocabularyModel) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
setVsab(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setVsDefinitionEntryDao(VSDefinitionEntryDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
setVsDefinitionEntryDaos(List<VSDefinitionEntryDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setVsDefinitionEntryService(VSDefinitionEntryService) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
Sets the vs definition entry service.
setVsEntryStateDao(VSEntryStateDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
setVsEntryStateDao(VSEntryStateDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
setVsEntryStateDao(VSEntryStateDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
setVsEntryStateDao(VSEntryStateDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
setVsEntryStateDao(VSEntryStateDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
setVsEntryStateDaos(List<VSEntryStateDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setVsExternalURIs(List<String>) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
setVsMultiAttribList(List<InsertOrUpdateValueSetsMultiAttribBean>) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertOrUpdatePickListEntryBean
 
setVsMultiAttribList(List<InsertOrUpdateValueSetsMultiAttribBean>) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertPickListDefinitionBean
 
setVsMultiAttribList(List<InsertOrUpdateValueSetsMultiAttribBean>) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.InsertValueSetDefinitionBean
 
setVsPLEntryGuid(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.PickListEntryNodeBean
 
setVsPropertyDao(VSPropertyDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
setVsPropertyDao(VSPropertyDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
setVsPropertyDao(VSPropertyDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
setVsPropertyDao(VSPropertyDao) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
setVsPropertyDaos(List<VSPropertyDao>) - Method in class org.lexevs.dao.database.access.DaoManager
 
setVsPropertyGuid(String) - Method in class org.lexevs.dao.database.ibatis.valuesets.parameter.VSPropertyBean
 
setVsPropertyService(VSPropertyService) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Sets the vs property service.
setVsPropertyService(VSPropertyService) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
Sets the vs property service.
setVsPropertyService(VSPropertyService) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
Sets the vs property service.
setVsPropertyService(VSPropertyService) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
Sets the vs property service.
setVstart(String) - Method in class org.lexgrid.loader.rrf.model.Mrsab
 
setWarningsLogged(Boolean) - Method in class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus
Sets the value of field 'warningsLogged'.
setWrapAt(int) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Assigns the requested line wrap position set for the current thread.
setWrapAt(int) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Assigns the requested line wrap position set for the current thread.
setXMLMetadataFilePath(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.HL7LoaderPreferences
Sets the value of field 'XMLMetadataFilePath'.
setXMLMetadataFilePath(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.LoaderPreferences
Sets the value of field 'XMLMetadataFilePath'.
setXMLMetadataFilePath(String) - Method in class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.MetaLoaderPreferences
Sets the value of field 'XMLMetadataFilePath'.
setXmlns(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyModel
 
setXmlRegistry(Registry) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
Sets the xml registry.
setXmlRegistry(Registry) - Method in class org.lexevs.registry.xmltransfer.RegistryXmlToDatabaseTransfer
Sets the xml registry.
setXmlRegistry(XmlRegistry) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Sets the xml registry.
shell_ - Variable in class org.LexGrid.LexBIG.gui.LB_GUI
 
shell_ - Variable in class org.LexGrid.LexBIG.gui.LB_VSD_GUI
 
shellListener - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
SHORT - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
shortNameExistsAsKey(String, Set<String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
shouldIsActiveBeUpdated(Entity) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.AbstractIsActiveSettingPostProcessor
Should is isActive flag be be updated.
SHOW_XML_DECLARATION - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
showDeprecatedMessage - Variable in class edu.mayo.informatics.resourcereader.obo.OBOResourceReaderHelper
 
showError(String, String) - Method in class org.LexGrid.LexBIG.gui.DialogHandler
 
showInfo(String, String, boolean) - Method in class org.LexGrid.LexBIG.gui.DialogHandler
 
showInfo(String, String) - Method in class org.LexGrid.LexBIG.gui.DialogHandler
 
showWarning(String, String) - Method in class org.LexGrid.LexBIG.gui.DialogHandler
 
shutdown() - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
shutdown() - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
shutdown() - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
shutdown() - Method in interface org.lexevs.system.service.SystemResourceService
 
shutdown() - Method in class org.lexevs.system.utility.MyClassLoader
 
shutdown() - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
shutdown() - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Shuts down LexBIG Services and all associated resources.
si - Variable in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
The si.
SIB - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
SIMCodedNodeSetDao - Class in org.lexevs.dao.database.sqlimplementedmethods.codednodeset
The Class SIMCodedNodeSetDao.
SIMCodedNodeSetDao() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.codednodeset.SIMCodedNodeSetDao
 
SimpleCodingSchemeIdSetter - Class in org.lexgrid.loader.data.codingScheme
The Interface SimpleCodingSchemeIdSetter.
SimpleCodingSchemeIdSetter(String, String) - Constructor for class org.lexgrid.loader.data.codingScheme.SimpleCodingSchemeIdSetter
 
SimpleEmailAppender - Class in org.lexevs.logging
Simple SMTP Client that allows your Java App send emails.
SimpleEmailAppender() - Constructor for class org.lexevs.logging.SimpleEmailAppender
Instantiates a new simple email appender.
SimpleEmailAppender(TriggeringEventEvaluator) - Constructor for class org.lexevs.logging.SimpleEmailAppender
Instantiates a new simple email appender.
SimpleLogger - Class in org.lexevs.logging
The Class SimpleLogger.
SimpleLogger() - Constructor for class org.lexevs.logging.SimpleLogger
 
SimpleMemUsageReporter - Class in org.LexGrid.util
Tool for simple "heap profiling" over long runs where it is inconvenient to use an actual profiling tool.
SimpleMemUsageReporter() - Constructor for class org.LexGrid.util.SimpleMemUsageReporter
 
SimpleMemUsageReporter.Snapshot - Class in org.LexGrid.util
Convenience class for holding information about the heap
SimpleTests - Class in org.LexGrid.LexBIG.Impl.test
Random test code used during the developement process.
SimpleTests() - Constructor for class org.LexGrid.LexBIG.Impl.test.SimpleTests
 
singleDBModeServers - Static variable in class org.LexGrid.LexBIG.gui.Constants
 
SingleItemToListProcessorDecorator<I,O> - Class in org.lexgrid.loader.processor.decorator
 
SingleItemToListProcessorDecorator(ItemProcessor<List<I>, List<O>>) - Constructor for class org.lexgrid.loader.processor.decorator.SingleItemToListProcessorDecorator
 
SingleItemToListReaderDecorator<I> - Class in org.lexgrid.loader.reader.decorator
 
SingleItemToListReaderDecorator(ItemReader<I>) - Constructor for class org.lexgrid.loader.reader.decorator.SingleItemToListReaderDecorator
 
SingleTemplateDisposableLuceneCommonEntityDao - Class in org.lexevs.dao.index.lucene.v2010.entity
The Class LuceneEntityDao.
SingleTemplateDisposableLuceneCommonEntityDao(IndexRegistry, LuceneIndexTemplate, List<AbsoluteCodingSchemeVersionReference>) - Constructor for class org.lexevs.dao.index.lucene.v2010.entity.SingleTemplateDisposableLuceneCommonEntityDao
 
size() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7ConceptList
 
size() - Method in interface org.lexevs.cache.CacheRegistry.CacheWrapper
 
size() - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
SizeLimitedBufferedGroupItemReader<I> - Class in org.lexgrid.loader.reader
The Class SizeLimitedBufferedGroupItemReader.
SizeLimitedBufferedGroupItemReader() - Constructor for class org.lexgrid.loader.reader.SizeLimitedBufferedGroupItemReader
 
SKIP_NON_LEXGRID_FILES - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
SkippingItemReader<I> - Class in org.lexgrid.loader.reader
The Class SkippingItemReader.
SkippingItemReader() - Constructor for class org.lexgrid.loader.reader.SkippingItemReader
 
SkipPolicy<I> - Interface in org.lexgrid.loader.reader.support
The Interface SkipPolicy.
Skos - Class in org.lexgrid.exporter.owlrdf
 
Skos() - Constructor for class org.lexgrid.exporter.owlrdf.Skos
 
SKOS_ALTLABEL - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_CONCEPT - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_DEFINITION - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_NOTE - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_NS_PREFIX - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_NS_URI - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SKOS_PREFLABEL - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SLOT_COMMENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_FMA_CONCEPT_CODE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_FMA_NON_ENG_EQUIV - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_FMA_OTHER_ENG_EQUIV - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_FMA_PREFERRED_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_FMA_SYNONYM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_ASSOCIATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_COMMENT - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_DEFINITION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_INSTRUCTION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_PRESENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
SLOT_TYPE_PROPERTY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
snapshot() - Static method in class org.LexGrid.util.SimpleMemUsageReporter
Takes a snapshot of the current heap
Snapshot(long, long) - Constructor for class org.LexGrid.util.SimpleMemUsageReporter.Snapshot
 
SnodentSQL - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading from NCIMetaThesaurus format.
SnodentSQL(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
SnodentSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SnodentSQL
 
SOME - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
Sort(ColumnSortType, CodedNodeGraphService.Order) - Constructor for class org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Sort
Instantiates a new sort.
Sort - Interface in org.LexGrid.LexBIG.Extensions.Query
Allows for unique sorting of query results.
sort(List<ResolvedPickListEntry>, Integer) - Static method in class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
sort(ResolvedPickListEntry[], Integer) - Static method in class org.lexgrid.valuesets.helper.PLEntryNodeSortUtil
 
sortByScore(String, ResolvedConceptReferencesIterator, int) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
Sorts the given concept references based on a scoring algorithm designed to provide a more natural ordering.
SortContainer() - Constructor for class org.lexevs.dao.database.utility.DaoUtility.SortContainer
 
SortContext - Enum in org.LexGrid.LexBIG.DataModel.InterfaceElements.types
Describes a LexBIG sort module.
SortContextDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors
Class SortContextDescriptor.
SortContextDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.descriptors.SortContextDescriptor
 
SortDescription - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
A description of of a LexBIG extension module.
SortDescription() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription
 
SortDescriptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class SortDescriptionDescriptor.
SortDescriptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortDescriptionDescriptor
 
SortDescriptionList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class SortDescriptionList.
SortDescriptionList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList
 
SortDescriptionListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class SortDescriptionListDescriptor.
SortDescriptionListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortDescriptionListDescriptor
 
SortingListProcessor<I,O> - Class in org.lexgrid.loader.processor
The Class SortingListProcessor.
SortingListProcessor() - Constructor for class org.lexgrid.loader.processor.SortingListProcessor
 
sortOnText(List<LexEVSTreeItem>, Comparator<LexEVSTreeItem>) - Method in class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
SortOption - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
Represents a pairing of sort algorithm and order.
SortOption() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption
 
SortOptionDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class SortOptionDescriptor.
SortOptionDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SortOptionDescriptor
 
SortOptionList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class SortOptionList.
SortOptionList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList
 
SortOptionListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class SortOptionListDescriptor.
SortOptionListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SortOptionListDescriptor
 
sortOptions - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
SortOptions - Class in org.LexGrid.LexBIG.gui.sortOptions
A GUI Shell to let you choose what sort order you want to retrieve thing in.
SortOptions(LB_GUI, CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.gui.sortOptions.SortOptions
 
SortOptions(LB_GUI, CodedNodeSet) - Constructor for class org.LexGrid.LexBIG.gui.sortOptions.SortOptions
 
sortOptions_ - Variable in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
SOS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
SOS - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
SoundsLike - Class in org.LexGrid.LexBIG.example
Example showing how to list concepts with presentation text that 'sounds like' a specified value.
SoundsLike() - Constructor for class org.LexGrid.LexBIG.example.SoundsLike
 
SOURCE - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
source - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
source - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
SOURCE - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
Source - Class in org.LexGrid.commonTypes
The local identifier of a person, organization of bibliographic resource that played a role in the creation or maintenance of a resource.
Source() - Constructor for class org.LexGrid.commonTypes.Source
 
Source(String) - Constructor for class org.LexGrid.commonTypes.Source
 
source(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
SOURCE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
SOURCE - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
SOURCE_AUI_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SOURCE_CODE_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SOURCE_CODE_SYSTEM - Static variable in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
SOURCE_DIR - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The SOURC e_ dir.
SOURCE_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters
 
SOURCE_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
SOURCE_QUALIFIER - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The SOURC e_ qualifier.
SOURCE_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SOURCE_SCHEME_NAME - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
SourceAndTargetMappingPrefixedParameter - Class in org.lexevs.dao.database.ibatis.parameter
 
SourceAndTargetMappingPrefixedParameter(String, String, String, String) - Constructor for class org.lexevs.dao.database.ibatis.parameter.SourceAndTargetMappingPrefixedParameter
 
SourceAssertedIndexerTest - Class in org.lexevs.dao.index.indexer
 
SourceAssertedIndexerTest() - Constructor for class org.lexevs.dao.index.indexer.SourceAssertedIndexerTest
 
SourceAssertedScoreDocTransformer - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SourceAssertedScoreDocTransformer() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedScoreDocTransformer
 
SourceAssertedScoreDocTransformerExecutor - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SourceAssertedScoreDocTransformerExecutor() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedScoreDocTransformerExecutor
 
SourceAssertedValueSetBatchLoader - Class in org.LexGrid.LexBIG.Impl.loaders
 
SourceAssertedValueSetBatchLoader(AssertedValueSetParameters, String, String) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.SourceAssertedValueSetBatchLoader
 
SourceAssertedValueSetDao - Interface in org.lexevs.dao.database.access.valuesets
 
SourceAssertedValueSetDefinitionLauncher - Class in org.LexGrid.LexBIG.admin
 
SourceAssertedValueSetDefinitionLauncher() - Constructor for class org.LexGrid.LexBIG.admin.SourceAssertedValueSetDefinitionLauncher
 
SourceAssertedValueSetHierarchyServices - Interface in org.lexgrid.valuesets.sourceasserted
 
SourceAssertedValueSetHierarchyServicesImpl - Class in org.lexgrid.valuesets.sourceasserted.impl
 
SourceAssertedValueSetHierarchyServicesImpl() - Constructor for class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetHierarchyServicesImpl
 
SourceAssertedValueSetIndexCreator - Class in org.lexevs.dao.index.indexer
 
SourceAssertedValueSetIndexCreator() - Constructor for class org.lexevs.dao.index.indexer.SourceAssertedValueSetIndexCreator
 
SourceAssertedValueSetScoreDocIteratorWrapper - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SourceAssertedValueSetScoreDocIteratorWrapper(Set<AbsoluteCodingSchemeVersionReference>, List<ScoreDoc>) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetScoreDocIteratorWrapper
 
SourceAssertedValueSetSearchExtension - Interface in org.LexGrid.LexBIG.Extensions.Generic
 
SourceAssertedValueSetSearchExtensionImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SourceAssertedValueSetSearchExtensionImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionImpl
 
SourceAssertedValueSetSearchExtensionTest - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
SourceAssertedValueSetSearchExtensionTest() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
SourceAssertedValueSetSearchIndexService - Class in org.lexevs.dao.index.service.search
 
SourceAssertedValueSetSearchIndexService() - Constructor for class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
SourceAssertedValueSetSearchIndexServiceTest - Class in edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets
 
SourceAssertedValueSetSearchIndexServiceTest() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
SourceAssertedValueSetService - Interface in org.lexgrid.valuesets.sourceasserted
 
SourceAssertedValueSetServiceImpl - Class in org.lexgrid.valuesets.sourceasserted.impl
 
SourceAssertedValueSetServiceImpl() - Constructor for class org.lexgrid.valuesets.sourceasserted.impl.SourceAssertedValueSetServiceImpl
 
SourceAssertedVSLoadTest - Class in org.lexevs.dao.index.operation
 
SourceAssertedVSLoadTest() - Constructor for class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
SourceAssertedVStoCodingSchemeLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The Interface ValueSetDefinitionLoader.
SourceAuiAssocQualResolver - Class in org.lexgrid.loader.meta.processor.support
The Class SourceAuiAssocQualResolver.
SourceAuiAssocQualResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.SourceAuiAssocQualResolver
 
sourceConceptAUI - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
sourceConceptCode - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.AssociationQualification
Deprecated.
 
sourceCSIdOrEntityCodeNS - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
SourceDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class SourceDescriptor.
SourceDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.SourceDescriptor
 
sourceEntityCodeOrId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
sourceList_ - Variable in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
sourceName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is TORSAB use corresponding ATV from MRSAT
sourceName(String) - Method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetParameters.Builder
 
SourceResolver<I> - Interface in org.lexgrid.loader.processor.support
 
sources - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
sourceToString(Source[]) - Method in class org.lexevs.dao.index.indexer.LuceneLoaderCodeIndexer
Source to string.
sourceTypeColDef - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
sourceVersion - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is TOVSAB use corresponding ATV from MRSAT
SpanWildcardQuery - Class in org.LexGrid.LexBIG.Impl.Extensions.Search.query
The Class SpanWildcardQuery.
SpanWildcardQuery(Term) - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
Instantiates a new span wildcard query.
SpellingErrorTolerantSubStringSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class WeightedDoubleMetaphoneSearch.java.
SpellingErrorTolerantSubStringSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.SpellingErrorTolerantSubStringSearch
 
splitEscapedString(String, String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
Split a string taking care not to split the escaped regex sequence For example, if str= "ab \, cd, efg" and the regex="," then the function should return ab \,cd and efg.
SpringBatchLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
 
SpringBatchMessageDirector - Class in org.lexgrid.loader.logging
 
SpringBatchMessageDirector(String, LoadStatus) - Constructor for class org.lexgrid.loader.logging.SpringBatchMessageDirector
 
SQL_CONNECTION - Static variable in class org.lexgrid.loader.constants.LoaderConstants
The SQ l_ connection.
SQL_FETCH_SIZE - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
SQLBase - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Common bits for formats that read or write from sql.
SQLBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
sqlConnection_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SQLConnectionInfo - Class in org.lexevs.dao.database.connection
Holder class for sql connection information.
SQLConnectionInfo() - Constructor for class org.lexevs.dao.database.connection.SQLConnectionInfo
 
sqlDrivers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
SQLHistoryInterface - Class in org.lexevs.dao.database.connection
Code to access the specific sql tables for a terminology.
SQLHistoryInterface(DataSource, DatabaseType, String) - Constructor for class org.lexevs.dao.database.connection.SQLHistoryInterface
Instantiates a new sQL history interface.
SQLImplementedMethods - Class in org.LexGrid.LexBIG.Impl.dataAccess
Deprecated.
SQLImplementedMethods() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
SQLImplementedMethodsDao - Class in org.lexevs.dao.database.sqlimplementedmethods
SQL Queries necessary for LexBIG operations.
SQLImplementedMethodsDao() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
 
SQLImplementedMethodsGraphVersionTests - Class in org.LexGrid.LexBIG.Impl.dataAccess
The Class SQLImplementedMethodsGraphVersionTests.
SQLImplementedMethodsGraphVersionTests() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
 
SQLImplementedMethodsTest - Class in org.LexGrid.LexBIG.Impl.dataAccess
The Class SQLImplementedMethodsTest.
SQLImplementedMethodsTest() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
SQLInterface - Class in org.lexevs.dao.database.connection
Code to access the specific sql tables for a terminology.
SQLInterface(DataSource, DatabaseType, String) - Constructor for class org.lexevs.dao.database.connection.SQLInterface
Instantiates a new sQL interface.
SQLInterface(String, String) - Constructor for class org.lexevs.dao.database.connection.SQLInterface
 
SQLInterfaceCodingSchemeDao - Class in org.lexevs.dao.database.sqlimplementedmethods.codingscheme
The Class SQLInterfaceCodingSchemeDao.
SQLInterfaceCodingSchemeDao() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
SQLInterfaceEntityDao - Class in org.lexevs.dao.database.sqlimplementedmethods.entity
The Class SQLInterfaceEntityDao.
SQLInterfaceEntityDao() - Constructor for class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
sqlLiteServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
SQLLiteTableConstants - Class in org.LexGrid.util.sql.lgTables
Constants like the insert statements for the SQLLite tables.
SQLLiteTableConstants() - Constructor for class org.LexGrid.util.sql.lgTables.SQLLiteTableConstants
 
SQLLiteTableUtilities - Class in org.LexGrid.util.sql.lgTables
Class for creating, adding/removing constraints, and cleaning the SQLLite tables.
SQLLiteTableUtilities(Connection) - Constructor for class org.LexGrid.util.sql.lgTables.SQLLiteTableUtilities
 
SQLLiteToLdap - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Convert-o-matic to take content from a SQL Lite database, convert it, and put it into a LDAP database.
SQLLiteToLdap(String, String, String, String, String, String, String, String, String, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.SQLLiteToLdap
Converts the contents of a SQLLite database into a LDAP database
SqlMapClientTemplateInserter - Class in org.lexevs.dao.database.ibatis.batch
The Class SqlMapClientTemplateInserter.
SqlMapClientTemplateInserter(SqlMapClientTemplate) - Constructor for class org.lexevs.dao.database.ibatis.batch.SqlMapClientTemplateInserter
Instantiates a new sql map client template inserter.
SqlMapExecutorBatchInserter - Class in org.lexevs.dao.database.ibatis.batch
The Class SqlMapExecutorBatchInserter.
SqlMapExecutorBatchInserter(SqlMapExecutor) - Constructor for class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
Instantiates a new sql map executor batch inserter.
SqlMapPrefixPropertiesFactory - Class in org.lexevs.dao.database.ibatis.sqlmap
 
SqlMapPrefixPropertiesFactory() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.SqlMapPrefixPropertiesFactory
 
sqlModifier_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SQLOut - Class in edu.mayo.informatics.lexgrid.convert.formats.outputFormats
Details for writing to SQL.
SQLOut(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
SQLOut() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.SQLOut
 
sqlServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
SQLTableConstants - Class in org.LexGrid.util.sql.lgTables
Constants like the insert statements for the SQL tables.
SQLTableConstants(String, String) - Constructor for class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
SQLTableUtilities - Class in org.LexGrid.util.sql.lgTables
Deprecated.
SQLTableUtilities(Connection, String) - Constructor for class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
SQLTableUtilities(DataSource, String) - Constructor for class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Use this constructor if you would rather have it check out connections from the pool as needed.
sqlTableUtility_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SQLToLdap - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Convert-o-matic to take things from the sql format, and populate ldap.
SQLToLdap(String, String, String, String, String, String, String, String, String, String, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.SQLToLdap
Load a terminology from the sql tables back into the ldap server.
SQLToSQLLite - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Convert-o-matic to take sql and put it into sql lite.
SQLToSQLLite(String, String, String, String, String, String, String, String, String, String, LgMessageDirectorIF, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.SQLToSQLLite
Convert-o-matic to take sql and put it into sqllite.
SQLUtility - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Utility stuff for formats that read or write to SQL.
SQLUtility() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLUtility
 
srs - Variable in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
SRUI - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
SRUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
SruiAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
SruiAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.SruiAssocQualResolver
 
STAGING_TABLES_PREFIX - Static variable in interface org.lexgrid.loader.staging.StagingManager
 
StagingManager - Interface in org.lexgrid.loader.staging
The Interface StagingManager.
START - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
start() - Method in class edu.mayo.informatics.resourcereader.core.SwingWorker
Start the worker thread.
START_TM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
startBatch() - Method in class org.lexevs.dao.database.ibatis.batch.InOrderOrderingBatchInserterDecorator
 
startBatch() - Method in class org.lexevs.dao.database.ibatis.batch.SqlMapExecutorBatchInserter
 
startBatch() - Method in interface org.lexevs.dao.database.inserter.BatchInserter
Start batch.
startDocument() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
startDocument() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
startElement(String, String, String, Attributes) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
startElement(String, String, String, Attributes) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.BasicXMLParser
 
startElement(String, String, String, Attributes) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.BasicXMLParser
 
startLogging(StyledText, StatusReporter) - Method in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
startNewDocument(String) - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
startRange(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
StartsWithSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class StartsWithSearch.
StartsWithSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.StartsWithSearch
 
state - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
status - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The status.
Status - Class in org.LexGrid.LexBIG.gui.restrictions
Holder to store the RestrictToStatus restrictions.
Status() - Constructor for class org.LexGrid.LexBIG.gui.restrictions.Status
 
status_ - Variable in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
status_ - Variable in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
status_ - Variable in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
status_ - Variable in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
StatusMonitor(StyledText, StatusReporter) - Constructor for class org.LexGrid.LexBIG.gui.LoadExportBaseShell.StatusMonitor
 
statusMonitorThread_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
StatusReporter - Interface in org.LexGrid.LexBIG.Utility.logging
 
StatusReportingCallback - Class in org.LexGrid.LexBIG.Impl.loaders
 
StatusReportingCallback(CachingMessageDirectorIF, ProcessStatus) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.StatusReportingCallback
 
statusText_ - Variable in class org.LexGrid.LexBIG.gui.LoadExportBaseShell
 
StatusTrackingLogger - Interface in org.lexgrid.loader.logging
 
stc_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
STD_IN_URI - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.Text_Loader
 
StemmedSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class StemmedSearch.
StemmedSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.StemmedSearch
 
STEMMING_PREFIX - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant STEMMING_PREFIX.
STEMMING_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The STEMMIN g_ propert y_ valu e_ field.
stemmingEnabled_ - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The stemming enabled_.
stemmingEnabled_ - Static variable in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
StepCompletionListener - Class in org.lexgrid.loader.listener
The listener interface for receiving stepCompletion events.
StepCompletionListener() - Constructor for class org.lexgrid.loader.listener.StepCompletionListener
 
StepCompletionListenerTest - Class in org.lexgrid.loader.listener
 
StepCompletionListenerTest() - Constructor for class org.lexgrid.loader.listener.StepCompletionListenerTest
 
storeAssociation(String, String, String, String, AssociationSource) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store an association (source)
storeAssociationPredicate(String, String, String, AssociationPredicate) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store an association predicate
storeAssociationPredicateIfNeeded(String, String, String, AssociationPredicate) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
storeAssociationRevision(String, String, String, String, AssociationSource, AssociationTarget) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeAssociatonData(String, String, String, String, AssociationSource, AssociationData) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeCodingScheme(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store a Coding Scheme using the DAO service.
storeCodingSchemePropertyRevision(Property, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeCodingSchemeRevision(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeCodingSchemeSystemReleaseRevision(Revision, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeConceptAndRelations(OBOResourceReader, OBOTerm, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGDynamicMapHolders
 
storeEntity(Entity, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store an Entity using the DAO service
storeEntityPropertyRevision(String, String, String, String, Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeEntityRevision(Entity, CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storePickList(PickListDefinition, String, Mappings) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storePickListDefinition(PickListDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storePickListDefinitionRevision(PickListDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storePickListDefinitionSystemReleaseRevision(PickListDefinition, Mappings, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeProperty(String, String, String, String, Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store properties.
storeRelation(String, String, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
Store a coding scheme relation
storeRelationsPropertyRevision(String, String, String, Property) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeRelationsRevision(String, String, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeRevision(String, String, Revision) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeRevisionMetaData(Revision) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeSystemRelease(SystemRelease) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeValueSet(ValueSetDefinition, String, Mappings) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeValueSetDefinition(ValueSetDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeValueSetDefinitionRevision(ValueSetDefinition) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
storeValueSetDefinitionSystemReleaseRevision(ValueSetDefinition, Mappings, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
 
str - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
streamedReadOnAssociationInstances(CodingScheme, Relations, Association) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
streamedReadOnAssociations(CodingScheme, Relations) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
streamedReadOnConcepts(CodingScheme, Entities) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
StreamingLexGridMarshalListener - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners
 
StreamingLexGridMarshalListener(Marshaller, CodedNodeGraph, CodedNodeSet, int, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.listeners.StreamingLexGridMarshalListener
 
StreamingXMLToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Wrapper for updated xml loader
StreamingXMLToSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.StreamingXMLToSQL
 
STRICT_OWL_IMPLEMENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
STRICT_OWL_IMPLEMENTATION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
STRING - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
string2FileURI(String) - Static method in class org.LexGrid.LexBIG.admin.Util
Returns a file URI corresponding to the given string.
string2FileURI(String) - Static method in class org.lexgrid.valuesets.admin.Util
Returns a file URI corresponding to the given string.
string2FileURI(String) - Static method in class org.lexgrid.valuesets.admin.UtilDeprecate
Returns a file URI corresponding to the given string.
STRING_TOKENIZER_TOKEN - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The Constant STRING_TOKEINZER_TOKEN.
STRING_TOKENIZER_TOKEN - Static variable in class org.lexevs.dao.index.metadata.BaseMetaDataLoader
 
StringArrayOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class StringOption.
StringArrayOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.StringArrayOption
Instantiates a new string option.
stringArrayToNullVersionPairArray(String[]) - Static method in class edu.mayo.informatics.lexgrid.convert.utility.URNVersionPair
 
stringArrayToString(String[]) - Static method in class org.LexGrid.util.Utility
 
StringArrayTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
An iBATIS type handler callback for String Array types
StringArrayTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.StringArrayTypeHandler
 
StringComparator - Class in edu.mayo.informatics.lexgrid.convert.utility
Used for sorting strings.
StringComparator() - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.StringComparator
 
StringComparator - Class in org.LexGrid.LexBIG.gui.codeSet
Comparator for sorting strings.
StringComparator() - Constructor for class org.LexGrid.LexBIG.gui.codeSet.StringComparator
 
StringHelper - Class in org.lexgrid.exporter.owlrdf
We need the StringHelp only because some property is not well format.
StringHelper(String, Map<String, String>) - Constructor for class org.lexgrid.exporter.owlrdf.StringHelper
 
StringHelper.StrFormat - Enum in org.lexgrid.exporter.owlrdf
 
StringOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class StringOption.
StringOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.StringOption
Instantiates a new string option.
StringToClassMappingClassifier - Class in org.lexevs.dao.database.constants.classifier.mapping
The Class StringToClassMappingClassifier.
StringToClassMappingClassifier() - Constructor for class org.lexevs.dao.database.constants.classifier.mapping.StringToClassMappingClassifier
 
StringUtils - Class in edu.mayo.informatics.resourcereader.core
Convenient methods for String manupulation
StringUtils() - Constructor for class edu.mayo.informatics.resourcereader.core.StringUtils
 
stringValue(Object) - Method in class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
stringValue(Object) - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
String value.
stringValue(Object) - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
stripDataType(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
stripLastColon(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
stripQuotes(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
STT - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
StubReturningCycleDetectingCallback - Class in org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback
The Class StubReturningCycleDetectingCallback.
StubReturningCycleDetectingCallback() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.StubReturningCycleDetectingCallback
 
styleRanges - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
stype - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
STYPE1_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
Stype1AssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
Stype1AssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.Stype1AssocQualResolver
 
STYPE2_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
Stype2AssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
Stype2AssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.Stype2AssocQualResolver
 
STYPE_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
subset - Variable in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
SUBSETDEF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
SubStringSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class SubStringSearch.
SubStringSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.SubStringSearch
 
subsume(AssociationSource, AssociationTarget) - Static method in class org.LexGrid.custom.relations.RelationsUtil
This method ensures that duplicate AssociationTarget's are not added to a Association Source
subsume(AssociationPredicate, AssociationSource) - Static method in class org.LexGrid.custom.relations.RelationsUtil
This method ensures that duplicate AssociationSources are not added to AssociationPredicate
subsume(Relations, AssociationPredicate) - Static method in class org.LexGrid.custom.relations.RelationsUtil
This method ensures that duplicate AssociationPredicates is not added into Relations
subsume(CodingScheme, Relations) - Static method in class org.LexGrid.custom.relations.RelationsUtil
The method ensure that duplicate Relations is not added to CodingSchem
sui - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
SUI_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
suite() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapAllTests
 
suite() - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapQueryTests
 
SUPER_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
SUPP_HIERARCHY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
SUPP_HIERARCHY - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
SUPP_HIERARCHY_ISA - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
SUPP_HIERARCHY_ISA - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
SUPP_HIERARCHY_ISA_ASSOCIATION_LIST - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
SUPP_HIERARCHY_ISA_ASSOCIATION_LIST - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
SUPP_HIERARCHY_ISA_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
SUPP_HIERARCHY_ISA_URI - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
SUPPLEMENT_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
SupplementExtension - Interface in org.LexGrid.LexBIG.Extensions.Generic
A grouping of Coding Scheme Supplement related functionality.
SupplementExtensionImpl - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement
The Class SupplementExtensionImpl.
SupplementExtensionImpl() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.supplement.SupplementExtensionImpl
 
SupplementScheme - Class in org.LexGrid.LexBIG.admin
Utility to register, unregister, and list Coding Scheme Supplements usage: SupplementScheme [-parentUri parentUri] [-r] [-supplementUri supplementUri] [-parentVersion parentVersion] [-l] [-supplementVersion supplementVersion] [-u] -l,--list List Supplements -parentUri Parent URI.
SupplementScheme() - Constructor for class org.LexGrid.LexBIG.admin.SupplementScheme
 
SupportedAssociation - Class in org.LexGrid.naming
An associationName and the URI of the defining resource.
SupportedAssociation() - Constructor for class org.LexGrid.naming.SupportedAssociation
 
SupportedAssociation(String) - Constructor for class org.LexGrid.naming.SupportedAssociation
 
SupportedAssociationDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedAssociationDescriptor.
SupportedAssociationDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedAssociationDescriptor
 
supportedAssociationExists(CodingScheme, String) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
SupportedAssociationQualifier - Class in org.LexGrid.naming
An associationQualifier and the URI of the defining resource
SupportedAssociationQualifier() - Constructor for class org.LexGrid.naming.SupportedAssociationQualifier
 
SupportedAssociationQualifier(String) - Constructor for class org.LexGrid.naming.SupportedAssociationQualifier
 
SupportedAssociationQualifierDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedAssociationQualifierDescriptor.
SupportedAssociationQualifierDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedAssociationQualifierDescriptor
 
supportedAssociationQualifiers_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
supportedAssociationQualifiersExists(CodingScheme, AssociationQualification[]) - Method in class org.LexGrid.LexBIG.Impl.LexEVSAuthoringServiceImpl
 
supportedAssociations_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedAttribResolver<T> - Interface in org.lexgrid.loader.processor.support
The Interface SupportedAttribResolver.
SupportedAttributePostProcessor - Class in org.LexGrid.LexBIG.Impl.loaders.postprocessor
The Class SupportedAttributePostProcessor.
SupportedAttributePostProcessor() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.postprocessor.SupportedAttributePostProcessor
 
SupportedAttributesContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Value Set Definition Supported Attributes SWT Table.
SupportedAttributesContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesContentProvider
 
SupportedAttributesLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Supported Attributes SWT table view.
SupportedAttributesLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.SupportedAttributesLabelProvider
 
SupportedAttributeSupport - Class in org.lexgrid.loader.dao
The Class SupportedAttributeSupport.
SupportedAttributeSupport() - Constructor for class org.lexgrid.loader.dao.SupportedAttributeSupport
 
SupportedAttributeTemplate - Interface in org.lexgrid.loader.dao.template
The Interface SupportedAttributeTemplate.
SupportedCodingScheme - Class in org.LexGrid.naming
A codingSchemeName and the URI of the defining resource
SupportedCodingScheme() - Constructor for class org.LexGrid.naming.SupportedCodingScheme
 
SupportedCodingScheme(String) - Constructor for class org.LexGrid.naming.SupportedCodingScheme
 
SupportedCodingSchemeDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedCodingSchemeDescriptor.
SupportedCodingSchemeDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedCodingSchemeDescriptor
 
supportedCodingSchemes_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedConceptDomain - Class in org.LexGrid.naming
A conceptDomain and the corresponding URI
SupportedConceptDomain() - Constructor for class org.LexGrid.naming.SupportedConceptDomain
 
SupportedConceptDomain(String) - Constructor for class org.LexGrid.naming.SupportedConceptDomain
 
SupportedConceptDomainDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedConceptDomainDescriptor.
SupportedConceptDomainDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedConceptDomainDescriptor
 
supportedConceptPropertiesMap - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
supportedConceptRelationship - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
supportedConceptRelationshipsMap - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
SupportedContainerName - Class in org.LexGrid.naming
A containerName and the URI of the defining resource
SupportedContainerName() - Constructor for class org.LexGrid.naming.SupportedContainerName
 
SupportedContainerName(String) - Constructor for class org.LexGrid.naming.SupportedContainerName
 
SupportedContainerNameDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedContainerNameDescriptor.
SupportedContainerNameDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedContainerNameDescriptor
 
SupportedContext - Class in org.LexGrid.naming
A context and the URI of the defining resource
SupportedContext() - Constructor for class org.LexGrid.naming.SupportedContext
 
SupportedContext(String) - Constructor for class org.LexGrid.naming.SupportedContext
 
SupportedContextDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedContextDescriptor.
SupportedContextDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedContextDescriptor
 
SupportedDataType - Class in org.LexGrid.naming
A data type and the URI of the defining resource
SupportedDataType() - Constructor for class org.LexGrid.naming.SupportedDataType
 
SupportedDataType(String) - Constructor for class org.LexGrid.naming.SupportedDataType
 
SupportedDataTypeDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedDataTypeDescriptor.
SupportedDataTypeDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedDataTypeDescriptor
 
SupportedDegreeOfFidelity - Class in org.LexGrid.naming
A degreeOfFidelity and the URI of the defining resource
SupportedDegreeOfFidelity() - Constructor for class org.LexGrid.naming.SupportedDegreeOfFidelity
 
SupportedDegreeOfFidelity(String) - Constructor for class org.LexGrid.naming.SupportedDegreeOfFidelity
 
SupportedDegreeOfFidelityDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedDegreeOfFidelityDescriptor.
SupportedDegreeOfFidelityDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedDegreeOfFidelityDescriptor
 
SupportedElement - Class in org.LexGrid.LexBIG.DataModel.Core
An association code, language, data type, source, etc. that is represented by a coded node list or node graph.
SupportedElement() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.SupportedElement
 
SupportedElementDescriptor - Class in org.LexGrid.LexBIG.DataModel.Core.descriptors
Class SupportedElementDescriptor.
SupportedElementDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Core.descriptors.SupportedElementDescriptor
 
SupportedElementList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class SupportedElementList.
SupportedElementList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList
 
SupportedElementListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class SupportedElementListDescriptor.
SupportedElementListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SupportedElementListDescriptor
 
SupportedEntityType - Class in org.LexGrid.naming
An entityType and the URI of the defining resource
SupportedEntityType() - Constructor for class org.LexGrid.naming.SupportedEntityType
 
SupportedEntityType(String) - Constructor for class org.LexGrid.naming.SupportedEntityType
 
SupportedEntityTypeDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedEntityTypeDescriptor.
SupportedEntityTypeDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedEntityTypeDescriptor
 
supportedHierarchies_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedHierarchy - Class in org.LexGrid.naming
A list of associations that can be browsed hierarchically.
SupportedHierarchy() - Constructor for class org.LexGrid.naming.SupportedHierarchy
 
SupportedHierarchy(String) - Constructor for class org.LexGrid.naming.SupportedHierarchy
 
SupportedHierarchyDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedHierarchyDescriptor.
SupportedHierarchyDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedHierarchyDescriptor
 
supportedIndexVersion2009 - Static variable in class org.lexevs.dao.index.lucene.v2009.entity.LuceneEntity2009Dao
The supported index version2009.
supportedIndexVersion2010 - Static variable in class org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao
The supported index version2010.
supportedIndexVersion2013 - Static variable in class org.lexevs.dao.index.lucene.v2013.search.LuceneSearchDao
The supported index version2013.
supportedIndexVersion2013 - Static variable in class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
The supported index version2013.
SupportedLanguage - Class in org.LexGrid.naming
A language and the URI of the defining resource
SupportedLanguage() - Constructor for class org.LexGrid.naming.SupportedLanguage
 
SupportedLanguage(String) - Constructor for class org.LexGrid.naming.SupportedLanguage
 
SupportedLanguageDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedLanguageDescriptor.
SupportedLanguageDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedLanguageDescriptor
 
supportedLanguages_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedMappings - Class in edu.mayo.informatics.lexgrid.convert.Conversions
Helper class to maintain supported mappings during EMF conversions and apply them to an EMF-based CodingScheme.
SupportedMappings(LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings
 
SupportedNamespace - Class in org.LexGrid.naming
A namespaceName and the corresponding URI
SupportedNamespace() - Constructor for class org.LexGrid.naming.SupportedNamespace
 
SupportedNamespace(String) - Constructor for class org.LexGrid.naming.SupportedNamespace
 
SupportedNamespaceDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedNamespaceDescriptor.
SupportedNamespaceDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedNamespaceDescriptor
 
SupportedProperty - Class in org.LexGrid.naming
A propertyName and the URI of the defining resource
SupportedProperty() - Constructor for class org.LexGrid.naming.SupportedProperty
 
SupportedProperty(String) - Constructor for class org.LexGrid.naming.SupportedProperty
 
SupportedPropertyDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedPropertyDescriptor.
SupportedPropertyDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedPropertyDescriptor
 
SupportedPropertyLink - Class in org.LexGrid.naming
A propertyLinkName and ththe URI of the defining resource
SupportedPropertyLink() - Constructor for class org.LexGrid.naming.SupportedPropertyLink
 
SupportedPropertyLink(String) - Constructor for class org.LexGrid.naming.SupportedPropertyLink
 
SupportedPropertyLinkDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedPropertyLinkDescriptor.
SupportedPropertyLinkDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedPropertyLinkDescriptor
 
supportedPropertyLinks_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedPropertyQualifier - Class in org.LexGrid.naming
A propertyQualifierName the URI of the defining resource
SupportedPropertyQualifier() - Constructor for class org.LexGrid.naming.SupportedPropertyQualifier
 
SupportedPropertyQualifier(String) - Constructor for class org.LexGrid.naming.SupportedPropertyQualifier
 
SupportedPropertyQualifierDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedPropertyQualifierDescriptor.
SupportedPropertyQualifierDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedPropertyQualifierDescriptor
 
supportedPropertyQualifiers_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedPropertyQualifierType - Class in org.LexGrid.naming
A propertyQualifierType the URI of the defining resource
SupportedPropertyQualifierType() - Constructor for class org.LexGrid.naming.SupportedPropertyQualifierType
 
SupportedPropertyQualifierType(String) - Constructor for class org.LexGrid.naming.SupportedPropertyQualifierType
 
SupportedPropertyQualifierTypeDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedPropertyQualifierTypeDescriptor.
SupportedPropertyQualifierTypeDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedPropertyQualifierTypeDescriptor
 
SupportedPropertyType - Class in org.LexGrid.naming
A propertyType and the URI of the defining resource
SupportedPropertyType() - Constructor for class org.LexGrid.naming.SupportedPropertyType
 
SupportedPropertyType(String) - Constructor for class org.LexGrid.naming.SupportedPropertyType
 
SupportedPropertyTypeDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedPropertyTypeDescriptor.
SupportedPropertyTypeDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedPropertyTypeDescriptor
 
supportedPropertyTypes_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedRepresentationalForm - Class in org.LexGrid.naming
A representationalForm and the URI of the defining resource
SupportedRepresentationalForm() - Constructor for class org.LexGrid.naming.SupportedRepresentationalForm
 
SupportedRepresentationalForm(String) - Constructor for class org.LexGrid.naming.SupportedRepresentationalForm
 
SupportedRepresentationalFormDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedRepresentationalFormDescriptor.
SupportedRepresentationalFormDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedRepresentationalFormDescriptor
 
SupportedSortOrder - Class in org.LexGrid.naming
The local identifier and the URI of the defining resource
SupportedSortOrder() - Constructor for class org.LexGrid.naming.SupportedSortOrder
 
SupportedSortOrder(String) - Constructor for class org.LexGrid.naming.SupportedSortOrder
 
SupportedSortOrderDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedSortOrderDescriptor.
SupportedSortOrderDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedSortOrderDescriptor
 
SupportedSource - Class in org.LexGrid.naming
A source and the URI of the defining resource.
SupportedSource() - Constructor for class org.LexGrid.naming.SupportedSource
 
SupportedSource(String) - Constructor for class org.LexGrid.naming.SupportedSource
 
SupportedSourceDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedSourceDescriptor.
SupportedSourceDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedSourceDescriptor
 
SupportedSourceRole - Class in org.LexGrid.naming
A source role and athe URI of the defining resource
SupportedSourceRole() - Constructor for class org.LexGrid.naming.SupportedSourceRole
 
SupportedSourceRole(String) - Constructor for class org.LexGrid.naming.SupportedSourceRole
 
SupportedSourceRoleDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedSourceRoleDescriptor.
SupportedSourceRoleDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedSourceRoleDescriptor
 
supportedSources_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
SupportedStatus - Class in org.LexGrid.naming
An entryStatus and the URI of the defining resource
SupportedStatus() - Constructor for class org.LexGrid.naming.SupportedStatus
 
SupportedStatus(String) - Constructor for class org.LexGrid.naming.SupportedStatus
 
SupportedStatusDescriptor - Class in org.LexGrid.naming.descriptors
Class SupportedStatusDescriptor.
SupportedStatusDescriptor() - Constructor for class org.LexGrid.naming.descriptors.SupportedStatusDescriptor
 
supports2009Model() - Method in class org.lexevs.dao.database.connection.SQLHistoryInterface
Supports2009 model.
supports2009Model() - Method in class org.lexevs.dao.database.connection.SQLInterface
Supports2009 model.
supports2009Model() - Method in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
supportsDatabases(DatabaseType) - Method in class org.lexevs.dao.database.key.incrementer.AbstractKeyIncrementer
 
supportsDatabases(DatabaseType) - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Supports databases.
supportsLexEvsIndexFormatVersion(LexEvsIndexFormatVersion) - Method in class org.lexevs.dao.index.access.AbstractBaseIndexDao
 
supportsLexEvsIndexFormatVersion(LexEvsIndexFormatVersion) - Method in interface org.lexevs.dao.index.access.LexEvsIndexFormatVersionAwareDao
Supports lex evs index format version.
supportsLgSchemaVersion(LexGridSchemaVersion) - Method in class org.lexevs.dao.database.access.AbstractBaseDao
 
supportsLgSchemaVersion(LexGridSchemaVersion) - Method in interface org.lexevs.dao.database.access.LexGridSchemaVersionAwareDao
Supports lg schema version.
supportsStreamedRead(CodingScheme) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.semnet.SemNetToLg
 
suppress - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrSat
 
SUPPRESS_QUALIFIER - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
SuppressAssocQualResolver - Class in org.lexgrid.loader.rrf.processor.support
The Class RelaAssocQualResolver.
SuppressAssocQualResolver() - Constructor for class org.lexgrid.loader.rrf.processor.support.SuppressAssocQualResolver
 
surveySystemRelease(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
This does preprocessing to indicate whether the current system release has a given list of schemes, pick lists or value sets.
SwingWorker - Class in edu.mayo.informatics.resourcereader.core
This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread.
SwingWorker() - Constructor for class edu.mayo.informatics.resourcereader.core.SwingWorker
Start a thread that will call the construct method and then exit.
SWRLB_PREFIX - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
SYNONYMS - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
synonyms - Variable in class edu.mayo.informatics.resourcereader.obo.OBOEntity
 
sysErrLogQueue() - Method in class org.lexevs.logging.Logger
Sys err log queue.
SYSTEM_RELEASE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
SYSTEM_RELEASE_REFS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
systemCSProperties - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
SystemEventListener - Interface in org.lexevs.system.event
The listener interface for receiving databaseServiceEvent events.
SystemEventSupport - Class in org.lexevs.system.event
The Class DatabaseServiceEventSupport.
SystemEventSupport() - Constructor for class org.lexevs.system.event.SystemEventSupport
 
systemRelationsProperties - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
 
SystemRelease - Class in org.LexGrid.versions
A collection of coding schemes, value set definitions, pick list definitions and/or revision records that are distributed as a unit.
SystemRelease() - Constructor for class org.LexGrid.versions.SystemRelease
 
systemReleaseCodingSchemePropertiesSurvey(URI, LgMessageDirectorIF) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LexGridXMLProcessor
Surveying the xml of a system release to allow accurate streaming to the data base.
SystemReleaseDao - Interface in org.lexevs.dao.database.access.systemRelease
The Interface SystemReleaseDao.
SystemReleaseDescriptor - Class in org.LexGrid.versions.descriptors
Class SystemReleaseDescriptor.
SystemReleaseDescriptor() - Constructor for class org.LexGrid.versions.descriptors.SystemReleaseDescriptor
 
SystemReleaseDetail - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements
The combination of a system release and all of the entityVersions that accompanied that release.
SystemReleaseDetail() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail
 
SystemReleaseDetailDescriptor - Class in org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors
Class SystemReleaseDetailDescriptor.
SystemReleaseDetailDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.InterfaceElements.descriptors.SystemReleaseDetailDescriptor
 
SystemReleaseList - Class in org.LexGrid.LexBIG.DataModel.Collections
Class SystemReleaseList.
SystemReleaseList() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList
 
SystemReleaseListDescriptor - Class in org.LexGrid.LexBIG.DataModel.Collections.descriptors
Class SystemReleaseListDescriptor.
SystemReleaseListDescriptor() - Constructor for class org.LexGrid.LexBIG.DataModel.Collections.descriptors.SystemReleaseListDescriptor
 
SystemReleaseSurvey - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
SystemReleaseSurvey() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
SystemResourceRefreshingListener - Class in org.lexevs.dao.database.service.listener
The listener interface for receiving systemResourceRefreshing events.
SystemResourceRefreshingListener() - Constructor for class org.lexevs.dao.database.service.listener.SystemResourceRefreshingListener
 
SystemResourceService - Interface in org.lexevs.system.service
The Interface SystemResourceService.
SystemResourceService.CodingSchemeMatcher - Interface in org.lexevs.system.service
The Interface CodingSchemeMatcher.
systemVariable - Static variable in class org.lexevs.system.utility.PropertiesUtility
 
SystemVariables - Class in org.lexevs.system.constants
This class reads and provides access to values specified in the configuration file.
SystemVariables(Logger) - Constructor for class org.lexevs.system.constants.SystemVariables
 
SystemVariables(Logger, Properties) - Constructor for class org.lexevs.system.constants.SystemVariables
 
SystemVariablesFactory - Class in org.lexevs.system.constants
A factory for creating SystemVariables objects.
SystemVariablesFactory() - Constructor for class org.lexevs.system.constants.SystemVariablesFactory
 

T

TabbedContent - Interface in org.LexGrid.LexBIG.gui.plugin
This interface allows an implementor to add a custom tab to the lower right hand palette of tabs.
TableMetadataDao - Interface in org.lexevs.dao.database.access.tablemetadata
The Interface TableMetadataDao.
tablename() - Method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
 
TABLENAME_PLACEHOLDER - Variable in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDao
The TABLENAM e_ placeholder.
tablePrefix - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
tables - Variable in class org.lexgrid.loader.setup.JobRepositoryManager
The tables.
tableStructureDescription - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
tag - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The tag.
TAG_ABBREVIATION - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ALTID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_AUTO_GENERATED_BY - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_COMMENT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_CONSIDER - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_CREATED_BY - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_CREATION_DATE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DATAVERSION - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DATE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DEFAULT_NS - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DEFAULTRELATIONSHIPID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DISJOINTFROM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_DOMAIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_FORMAT_VERSION - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_GENERICURL - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IDMAPPING - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IDSPACE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_BUILTIN - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_DATABASE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_EXAMPLE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_EXMPLID - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_NSIDRULE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_OBJECT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_SHORTHNDNAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_URLEXMPL - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IGNORE_URLSNTX - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_IMPORT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_INSTANCE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_INSTANCEOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_INTERSECTIONOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_INVERSEOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISA - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISANONYMOUS - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISANTISYMMETRIC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISCYCLIC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISOBSOLETE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISREFLEXIVE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISSYMMETRIC - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_ISTRANSITIVE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_NAME - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_NAMESPACE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_PROPERTYVALUE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_RANGE - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_RELATIONSHIP - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_REMARK - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_REPLACEDBY - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SAVED_BY - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SUBSET - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SUBSETDEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYM_BROAD - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYM_EXACT - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYM_NARROW - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYM_RELATED - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_SYNONYMTYPEDEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_TERM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_TYPEDEF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_TYPEREF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_UNIONOF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_USETERM - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_VERSION - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_XREF - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_XREFANALOG - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TAG_XREFUNK - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
TagScheme - Class in org.LexGrid.LexBIG.admin
Associates a tag ID (e.g.
TagScheme() - Constructor for class org.LexGrid.LexBIG.admin.TagScheme
 
tagUpdated(TagUpdateEvent) - Method in interface org.lexevs.registry.event.RegistryListener
Invoked when tag update occurs.
TagUpdateEvent - Class in org.lexevs.registry.event.events
The Class TagUpdateEvent.
TagUpdateEvent(String, RegistryEntry) - Constructor for class org.lexevs.registry.event.events.TagUpdateEvent
Instantiates a new tag update event.
TAIL - Static variable in class org.LexGrid.LexBIG.Impl.pagedgraph.root.AbstractEndNode
 
Tail(String, String) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.root.AbstractEndNode.Tail
 
TARGET_AUI_QUALIFIER - Static variable in class org.lexgrid.loader.meta.constants.MetaLoaderConstants
 
TARGET_CODE_SYSTEM - Static variable in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
TargetAuiAssocQualResolver - Class in org.lexgrid.loader.meta.processor.support
The Class TargetAuiAssocQualResolver.
TargetAuiAssocQualResolver() - Constructor for class org.lexgrid.loader.meta.processor.support.TargetAuiAssocQualResolver
 
targetCSIdOrEntityCodeNS - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
targetEntityCodeNSOrCSId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
targetEntityCodeOrId - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
targetName - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is FROMRSAB use corresponding ATV from MRSAT
targetTypeColDef - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
targetVersion - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.LexEVSRelationsValues
Where ATN is FROMVSAB use corresponding ATV from MRSAT
TBL_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME_PROP - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME_PROP_MULTI_ATTRIB - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME_SUPPORTED_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CODING_SCHEME_VERSIONS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_ASSOCIATION_TO_C_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_ASSOCIATION_TO_CONCEPT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_ASSOCIATION_TO_CONCEPT_TRANSITIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_ASSOCIATION_TO_D_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_ASSOCIATION_TO_DATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_HISTORY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_PROPERTY_LINKS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_CONCEPT_PROPERTY_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_ASSOCIATION_TO_D_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_ASSOCIATION_TO_DATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_ASSOCIATION_TO_E_QUALS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_ASSOCIATION_TO_ENTITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_ASSOCIATION_TO_ENTITY_TRANSITIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_PROPERTY_LINKS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_PROPERTY_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTITY_TYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTRY_IDS - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_ENTRY_STATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTRY_STATE - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_ENTRY_TYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_ENTRY_TYPE - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_INSTANCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_LEXGRID_TABLE_META_DATA - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_MAPPING - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_MAPPING - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_NCI_THESAURUS_HISTORY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_PICK_LIST - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_PL_ENTRY - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_PROPERTY - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_RELATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_RELATION_MULTI_ATTRIBUTES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_SYSTEM_RELEASE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_SYSTEM_RELEASE - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_SYSTEM_RELEASE_REFS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBL_VALUE_DOMAIN - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_VALUE_DOMAIN_TABLE_META_DATA - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBL_VD_ENTRY - Static variable in class org.lexgrid.valuesets.helper.VSDConstants
 
TBLCOL_APPROXNUMCONCEPTS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ASSOCIATIONID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ASSOCIATIONINSTANCEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ASSOCIATIONNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ATTRIBUTEVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_BASEDONRELEASE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CHANGEAGENT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CHANGEDOCUMENTATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CHANGEINSTRUCTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CHANGEINSTRUCTIONS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CHANGETYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEMEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEMEKEY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEMENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEMEREFERENCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CODINGSCHEMEURI - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_COMPLETEDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CONCEPTNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CONCEPTSTATUS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CONTAINERDC - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_CONTAINERNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_COPYRIGHT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DATAID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DATAVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEFAULTCODINGSCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEFAULTENTITYCODENAMESPACE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEFAULTLANGUAGE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEFAULTSORTORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEGREEOFFIDELITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEPENDENTVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DEPRECATED - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DESCRIPTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_DOMAINCONCEPTID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_EDITACTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_EDITDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_EDITORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_EFFECTIVEDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTITYCODE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTITYCODENAMESPACE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTITYDESCRIPTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTITYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTITYTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTRYORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTRYSTATEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ENTRYTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_EXPIRATIONDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_FIRSTRELEASE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_FOREIGNENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_FORMALNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_FORMAT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_FORWARDNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_IDVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_INCLUDE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_INCLUDECHILDREN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_INCLUDESVALUEDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_INVERSE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_INVERSEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISACTIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISANONYMOUS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISANTIREFLEXIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISANTISYMMETRIC - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISANTITRANSITIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISCOMPLETE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISDEFAULT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISDEFINED - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISDEFINING - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISFUNCTIONAL - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISINFERRED - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISNATIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISNAVIGABLE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISPREFERRED - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISREFLEXIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISREVERSEFUNCTIONAL - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISSELECTABLE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISSYMMETRIC - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISTRANSITIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_ISTRANSLATIONASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_LANGUAGE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_LEAFONLY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_LINK - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_LOCALID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_MATCHIFNOCONTEXT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_MODIFIEDINRELEASE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_MULTIATTRIBUTESKEY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_OPERATOR - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_OWNER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PICKLISTENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PICKLISTID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PICKTEXT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PLENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PRESENTATIONFORMAT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PREVENTRYSTATEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PREVREVISIONID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PROPERTYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PROPERTYNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PROPERTYTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_PROPERTYVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_QUALIFIERNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_QUALIFIERTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_QUALIFIERVALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REFERENCEASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REFERENCECODE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REFERENCEENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REFERENCENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REFERENCETYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REGISTEREDNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELATIONNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELATIVEORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASEAGENCY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASEDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASETYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASEURI - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RELEASEURN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REPRESENTATIONALFORM - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REPRESENTSREALMORCONTEXT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REPRESENTSVALUEDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REPRESENTSVALUEDOMAINVERSION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REPRESENTSVERSION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REVERSENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REVISIONDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REVISIONID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_REVISIONRELEASEURI - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_RULEORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCECODINGSCHEMEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCECODINGSCHEMENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCEENTITYCODE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCEENTITYCODENAMESPACE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCEPROPERTYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SOURCETYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_STATUS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_SUPPORTEDATTRIBUTETAG - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETCODINGSCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETCODINGSCHEMEID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETCODINGSCHEMENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETENTITYCODE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETENTITYCODENAMESPACE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETPROPERTYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETTOSOURCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TARGETTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TESTSUBSUMPTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TRANSITIVECLOSURE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_TYPENAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_URI - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_URN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VAL1 - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VAL2 - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUEDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUEDOMAINENTRYID - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUEDOMAINNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUEDOMAINREFERENCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VALUEDOMAINURI - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VERSION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VERSIONDATE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOL_VERSIONORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_COMMENT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DC_CODINGSCHEMES - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DC_CONCEPTS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DC_MAPPINGS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DC_RELATIONS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DC_VALUEDOMAINS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_DEFINITION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_FORMAT_TXT_HTML - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_FORMAT_TXT_PLAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_FORMAT_TXT_XML - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_HASSUBTYPE_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_HIERARCHY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_INSTRUCTION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_ISA_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_LOCALNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_MISSING - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_PRESENTATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_PROPERTYNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_QUALIFIER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SOURCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_STATUS_ACTIVE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_ASSOCIATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_ASSOCIATIONQUALIFIER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_CODINGSCHEME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_CONCEPTDOMAIN - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_CONCEPTSTATUS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_CONTAINERNAME - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_CONTEXT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_DATATYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_DEGREEOFFIDELITY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_ENTITYTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_FORMAT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_HIERARCHY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_LANGUAGE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_NAMESPACE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_PROPERTY - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_PROPERTYLINK - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_PROPERTYQUALIFIER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_PROPERTYQUALIFIERTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_PROPERTYTYPE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_REPRESENTATIONALFORM - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_ROLEGROUP - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_SORTORDER - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_SOURCE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_SOURCEROLE - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_SUPPTAG_STATUS - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_TEXTUALPRESENTATION - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
TBLCOLVAL_USAGECONTEXT - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
tearDown() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGridTest
 
tearDown() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAToLexGridTest
 
tearDown() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
tearDown() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCleanupIndexesTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateIndexTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateMultipleIndexesTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsWriteOverIndexTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.ManifestLoadWithAssociationTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.OrphanedIndexTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.SameSessionLoadandQueryTest
 
tearDownAfterClass() - Static method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
tearDownAfterClass() - Static method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
TERM_CTX - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
termClauses - Variable in class org.LexGrid.LexBIG.Impl.LexBIGServiceMetadataImpl
 
TerminologyMapBean - Class in org.LexGrid.custom.relations
 
TerminologyMapBean() - Constructor for class org.LexGrid.custom.relations.TerminologyMapBean
 
TerminologyServiceDesignation - Class in org.LexGrid.LexBIG.Extensions.Generic
 
TerminologyServiceDesignation() - Constructor for class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
TerminologyServiceDesignation(String) - Constructor for class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
tesExactCodeWrongCase() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
test() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
test() - Method in class org.lexevs.dao.index.indexer.SourceAssertedIndexerTest
 
test() - Method in class org.lexevs.dao.index.operation.OrphanedIndexTest
 
test() - Method in class org.lexevs.dao.indexer.utility.LazyLoadMetaDataTest
 
test() - Method in class org.LexGrid.LexBIG.admin.TestAdminUtilDisplayAndLog
 
test() - Method in class org.LexGrid.LexBIG.Impl.History.URIBasedHistoryServiceTest
 
Test() - Constructor for class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest.Test
 
testAbbreviateFromMiddle() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testActivate() - Method in class org.lexevs.registry.service.DatabaseRegistryTest
Test activate.
testAddIds() - Method in class org.lexgrid.loader.data.property.PrefixedSequentialIdSetterTest
Test add ids.
testAddNciHistoryResource() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
 
testAddOneTestOnly() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
testAddRemoveCycle() - Method in class org.LexGrid.LexBIG.Impl.ServiceManagerTest
 
testaddTargetToExistingSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.AddTargetToExistingSourceTest
 
testAddTrailingWildcardOneToken() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
Test add trailing wildcard one token.
testAddTrailingWildcardToAllTokensOneToken() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
Test add trailing wildcard to all tokens one token.
testAddTrailingWildcardToAllTokensTwoTokens() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
Test add trailing wildcard to all tokens two tokens.
testAddTrailingWildcardTwoTokens() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
Test add trailing wildcard two tokens.
testAdjustLengthAdd() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test adjust length add.
testAdjustLengthChop() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
 
TestAdminUtilDisplayAndLog - Class in org.LexGrid.LexBIG.admin
 
TestAdminUtilDisplayAndLog() - Constructor for class org.LexGrid.LexBIG.admin.TestAdminUtilDisplayAndLog
 
testAfterJob() - Method in class org.lexgrid.loader.listener.SetupListenerTest
 
testAfterStep() - Method in class org.lexgrid.loader.listener.StepCompletionListenerTest
 
TestAnnotatedCodingSchemeService() - Constructor for class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest.TestAnnotatedCodingSchemeService
 
testAreCodesRelated() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testAssertedValueSetIndexQuery() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetDaoTest
 
testAssocDef() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testAssociatedConceptsSourceOf() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testAssociatedConceptsSourceOfWithSortAsc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testAssociatedConceptsSourceOfWithSortDesc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testAssociatedConceptTargetOf() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testBadRootNode() - Method in class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolverTest
 
testBasicSerialization() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testBeforeJob() - Method in class org.lexgrid.loader.listener.SetupListenerTest
 
testBeforeStep() - Method in class org.lexgrid.loader.listener.StepCompletionListenerTest
 
testBothResolveMappingStrategies() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testBreakDown() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestManifestBreakDown
 
testBreakOnCommonName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testBuildRootFromOneElementRoot() - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilderTest
 
testBuildRootFromOneTailRoot() - Method in class org.lexevs.dao.database.operation.root.DefaultRootBuilderTest
 
testBuildTree() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
testCacheSetup() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test cache setup.
testCacheSetup() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test cache setup.
testCacheThreadSafety() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
 
testCacheThreadSafety() - Method in class org.lexevs.cache.MethodCachingProxyTest
 
testCaching() - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptorTest
Test caching.
testCallhasNextMultipleTimesWithNullReturn() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testCastLoader() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
testChangeTag() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDaoTest
Test change tag.
testClearCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test clear cache.
testClearCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test clear cache.
testClearCacheWithNestedCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test clear cache.
testClearCacheWithNestedCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test clear cache.
testCloneResult() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
 
testCloneResult() - Method in class org.lexevs.cache.MethodCachingProxyTest
 
testCodeExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testCodeExactCodingSchemeNameCorrect() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testCodeExactRedux() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testCodeSearchSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testCodeSearchWrongSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testCodeToReturnSorter() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturnTest
 
testCodingSchemeMetaDataEquals() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
testCodingSchemeMetaDataGetURIVersion() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
testCodingSchemeMetaDataHash() - Method in class org.lexevs.dao.indexer.utility.CodingSchemeMetaDataTest
 
testCollectionsCorrectness() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
testCompareAscending() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test compare ascending.
testCompareBadAlgorithm() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test compare bad algorithm.
testCompareByDifferentLanguage() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparatorTest
Test compare by different language.
testCompareByRank() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparatorTest
Test compare by rank.
testCompareBySameLanguage() - Method in class org.lexgrid.loader.umls.data.property.EntityPropertyPropertyComparatorTest
Test compare by same language.
testCompareDecending() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test compare decending.
testCompareDifferentClassesBogusClass() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test compare different classes bogus class.
testCompareDifferentClassesResolvedConceptReference() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test compare different classes resolved concept reference.
testComplexObject() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
 
testComplexObject() - Method in class org.lexevs.cache.MethodCachingProxyTest
 
testConcurrentMetaDataExists() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiIndexMetaDataFactoryTest
Test that we can use Spring to load our Context and retrieve the ConcurrentMetaData from it.
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.FileBase
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
testConnection() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
See if the provided parameters make a valid connection
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.HL7SQL
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIOwl
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.NCIThesaurusHistoryFile
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.RRFFiles
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.SemNetFiles
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
testConnection() - Method in interface edu.mayo.informatics.lexgrid.convert.formats.OutputFormatInterface
See if the provided parameters make a valid connection
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.ComputeTransitiveExpansionTable
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.DeleteLexGridTerminology
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.IndexLexGridDatabase
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.LexGridXMLOut
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.OBOOut
 
testConnection() - Method in class edu.mayo.informatics.lexgrid.convert.formats.outputFormats.RegisterLexGridTerminology
 
testConstructKey() - Method in class org.lexgrid.loader.rrf.staging.cache.interceptor.MrconsoStagingCacheInterceptorTest
Test construct key.
testContainsNonCodingSchemeResource() - Method in class org.lexevs.registry.service.DatabaseRegistryTest
 
testContainsNonCodingSchemeResourceInvalid() - Method in class org.lexevs.registry.service.DatabaseRegistryTest
 
testContainsPresentationSearchSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testContainsPresentationSearchTwoWords() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testCorrectConceptIsPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
 
testCorrectPartitionSize() - Method in class org.lexgrid.loader.rrf.partition.RrfFilePartitionerTest
Test get last number of cui.
testCreateAssociationTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateAssociationTargetTest
 
testCreateDifferentBaseName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCreateLoader() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
TestCreateMrMapScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateMrMapSchemeTest
 
testCreateNewAssociationSourceWithTarget() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateNewAssociationSourceWithTargetTest
 
testCreateStagingDatabase() - Method in class org.lexgrid.loader.staging.DefaultStagingManagerTest
 
testCreateSupportedCodingScheme() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCreateSupportedConceptDomain() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCreateSupportedNamespace() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCreateSupportedSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCreateTargetData() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.CreateNewAssociationDataTest
 
testCreateUri() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testCUIPresent() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAToLexGridTest
 
testDateParsingMethod() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testDateQuoteParse() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testDefaultHandler() - Method in class org.LexGrid.LexBIG.Impl.namespace.DefaultNamespaceHandlerTest
 
testDefaultIsActiveEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testDefinitionNotNull() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
 
testDeleteAllAssocQuals() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
testDeleteEntityFromIndex() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetDaoTest
 
testDeleteUriMapsOfCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct namespaces.
testDiffInShortName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testDisableCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
 
testDistinctEntityTypes() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct entity types.
testDistinctFormats() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct formats.
testDistinctLanguages() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct languages.
testDistinctNamespaces() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct namespaces.
testDistinctPropertyNames() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct property names.
testDistinctPropertyQualifierNames() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct property qualifier names.
testDistinctPropertyQualifierTypes() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct property qualifier types.
testDoCompare() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test do compare.
testDoesIndexHaveMatchingRegistryEntry() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
testDoesQueryResultsAtTarget() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnLeadingWildCardQueryResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnPhraseQueryResults() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnPrefixQueryResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnSameNumberOfResults() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnSpanQueryResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnTrailingWildCardQueryResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDoesQueryReturnWildCardQueryResult() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testDontProcess() - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolverTest
Test dont process.
testDontSkip() - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicyTest
Test dont skip.
testDropAllStagingDatabases() - Method in class org.lexgrid.loader.staging.DefaultStagingManagerTest
 
testDropIndex() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
testDropStagingDatabase() - Method in class org.lexgrid.loader.staging.DefaultStagingManagerTest
 
TestEhcacheStartUpOutputRemoval - Class in org.LexGrid.LexBIG.admin
 
TestEhcacheStartUpOutputRemoval() - Constructor for class org.LexGrid.LexBIG.admin.TestEhcacheStartUpOutputRemoval
 
testEncryptionDecryption() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestPasswordEncryption
 
testEntity() - Method in class org.lexgrid.loader.writer.EntityWriterTest
 
testEntityCount() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test entity count.
testEntityDefinition() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test lazy load presentations.
testEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Test entity description.
testEntityDescriptionOnAssociatiedConcepts() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testEntityId() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Test entity id.
testEntityPresentations() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test lazy load presentations.
testentityToValueSetTransform() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
testEntityType() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Test entity type.
testEqual() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
testEquals() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionTest
Test equals.
TestEqualsCodingSchemeReference - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions
 
TestEqualsCodingSchemeReference() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
testErrorCallback() - Method in class org.lexevs.dao.database.service.DatabaseServiceManagerTest
 
testErrorCallbackCodingSchemeService() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
Test insert coding scheme with everything.
testErrorCallbackCodingSchemeServiceNonAnnotatedException() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
 
testErrorCallbackCodingSchemeServiceWithRollback() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
 
testExactPresentation() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExactPresentationCaseInSensitive() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExactPresentationMissingSearchSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExactPresentationNonPreferred() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExactPresentationSearchSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExactPresentationSpecialCharacters() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testExecutionContextsPopulated() - Method in class org.lexgrid.loader.rrf.partition.RrfFilePartitionerTest
 
testExtensionMappingFormalNameTest() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
testExtensionMappingNameTest() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
testExtensionMappingNullVersionTest() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
testExtensionTest() - Method in class org.lexevs.dao.database.access.codednodegraph.MappingCodedNodeDaoFunctionTest
 
testExternalCodeExact() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testFactory() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
testFailedUmlsLoad() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
Test single db failed umls load.
testFilter() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
TestFilter - Class in org.LexGrid.LexBIG.Impl.helpers
Filter to use for JUnit test cases.
TestFilter() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
TestFilter2 - Class in org.LexGrid.LexBIG.Impl.helpers
Filter to use for JUnit test cases.
TestFilter2() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
testFilterByCui() - Method in class org.lexgrid.loader.umls.processor.support.filter.UniqueCuiListFilterTest
Test filter by cui.
testFilters() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
testFindNodeNumber() - Method in class org.lexevs.tree.model.LexEvsTreeTest
 
testFindNodeNumber() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeTest
 
testForNullPropertyId() - Method in class org.lexevs.dao.database.service.listener.DuplicatePropertyIdListenerTest
 
testForPropsAndQuals() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAHistoryPropsAndQualsTest
 
testGenerateStartingCyclingPrefix() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test generate starting cycling prefix.
testGetAllEntitiesByUids() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test lazy load presentations.
testGetAllEntitiesOfCodingScheme() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test get all entities of coding scheme.
testGetAllEntitiesOfCodingSchemeWithLimit() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test get all entities of coding scheme with limit.
testGetAllEntitiesOfCodingSchemeWithLimitAndStart() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test get all entities of coding scheme with limit and start.
testGetAllIncomingConcepts() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAllSourceAssertedValueSetEntities() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetAlternativeNamingForShortName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetAncestors() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetAncestors() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetAncestors() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetAncestorsInTransitiveClosure() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAnonymousDesignationForPredicateId() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
testGetAssociatedConceptResolveFalse() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testGetAssociatedConceptResolveTrue() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testGetAssociatedConceptResolveWithPropertyNameRestriction() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testGetAssociatedConceptResolveWithPropertyTypeRestriction() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testGetAssociationCodeFromAssociationName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationCodeFromAssociationNameWrong() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetAssociationForwardName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationNameForDirectionalNameForwardName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationNameForDirectionalNameReverseName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationNameFromAssociationCode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationNameFromAssociationCodeWrong() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetAssociationPredicateIdsForRelationsId() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
testGetAssociationQualifiers() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.GetAssociationQualifiersTest
 
testGetAssociationTripleData() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
 
testGetAssociationTripleTarget() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
 
testGetBaselines() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetBaselines() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetBaseLinesNullDates() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetBaseLinesNullDatesWithTwoResults() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetCanonicalValue() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetClassLoader() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get class loader.
testGetCodeAndCodingScheme() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Test get code and coding scheme.
testGetCodeAndSab() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Test get code and sab.
testGetCodeFromAui() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Test get code from aui.
testGetCodes() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Test get codes.
testGetCodesFromCui() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
 
testGetCodingSchemeByNameAndVersion() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme by name and version.
testGetCodingSchemeByUidEntryState() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetCodingSchemeEntry() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDaoTest
Test get coding scheme entry.
testGetCodingSchemeEntryState() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme entry state.
testGetCodingSchemeIdByNameAndVersion() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme id by name and version.
testGetCodingSchemeIdByUriAndVersion() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme id by uri and version.
testGetCodingSchemeLocalName() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme local name.
testGetCodingSchemeMultipleLocalNames() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme multiple local names.
testGetCodingSchemeSource() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme source.
testGetCodingSchemeSourceWithLocalNames() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetCodingSchemeSummaryByUriAndVersion() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test get coding scheme summary by uri and version.
testGetComparatorForBogusClass() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test get comparator for bogus class.
testGetComparatorForSearchClassInteger() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test get comparator for search class integer.
testGetComparatorForSearchClassString() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test get comparator for search class string.
testGetConceptChangeVersions() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetConceptChangeVersions() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetConceptCodeForURI() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetConceptCreationVersion() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetConceptCreationVersion() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetConceptReferencesContainingObject() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetConceptReferencesContainingObjectWithLimit() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetConceptReferencesContainingSubject() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetConceptReferencesContainingSubjectWithMultiple() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetCountConceptReferencesContainingObject() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetCountConceptReferencesContainingSubject() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetCuiFromAuiAndSab() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
Test get cui from aui and sab.
testGetCuisFromCode() - Method in class org.lexgrid.loader.rrf.staging.JdbcMrconsoStagingDaoTest
 
testGetDecendentsInTransitiveClosure() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetDefaultSourceIfNull() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetDescandents() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetDescandents() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetDescendants() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetDiff() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetDistinctNamespacesOfCode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetDistinctNamespacesOfCodeWithMultiple() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetEarliestBaseline() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetEarliestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetEarliestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetEditActionList() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetEditActionList2() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetEditActionList3() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetEditActionList3() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetEditActionListWithUriReferenceCode() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetEditActionListWithUriSourceAndReferenceCode() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetEditActionListWithUriSourceCode() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetEntitiesForResolvedVSReferences() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testGetEntityAssociationEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetEntityCountForTopNodeCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetTagTest
 
testGetEntityCountForTopNodeCodt() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexSupport
 
testGetEntityProcessed() - Method in class org.lexgrid.loader.processor.EntityProcessorTest
Test get entity.
testGetEntityUId() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetEntityWithEverything() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetEntityWithTwoTypes() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetExternalResolvedValueSets() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testGetHierarchyRoots() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
testGetHighestRank() - Method in class org.lexgrid.loader.processor.HighestRankingListProcessorTest
Test get highest rank.
testGetHistoryEntity() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
Test lazy load presentations.
testGetHistoryEntityWithTwoInHistory() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetHistoryProperty() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
testGetHistoryPropertyWithQualifier() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
testGetHistoryPropertyWithTwoProperties() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
testGetHistoryPropertyWithTwoQualifiers() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
testGetHsqlCreateScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get hsql create script.
testGetHsqlDropScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get hsql drop script.
testGetIndexLocation() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
testGetIndexName() - Method in class org.lexevs.dao.index.lucene.v2013.search.ValueSetDaoTest
 
testGetInternalCodingSchemeNameForUserCodingSchemeNameByCodingSchemeName() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal coding scheme name for user coding scheme name by coding scheme name.
testGetInternalCodingSchemeNameForUserCodingSchemeNameByFormalName() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal coding scheme name for user coding scheme name by formal name.
testGetInternalCodingSchemeNameForUserCodingSchemeNameByLocalName() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal coding scheme name for user coding scheme name by local name.
testGetInternalCodingSchemeNameForUserCodingSchemeNameByUri() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal coding scheme name for user coding scheme name by uri.
testGetInternalCodingSchemeNameForUserCodingSchemeNameError() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal coding scheme name for user coding scheme name error.
testGetInternalVersionStringForTag() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal version string for tag.
testGetInternalVersionStringForTagError() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal version string for tag error.
testGetInternalVersionStringForTagMultipleMatch() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal version string for tag multiple match.
testGetInternalVersionStringForTagNoMatch() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test get internal version string for tag no match.
testGetKeyForAssociationInstanceId() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test get key for association instance id.
testGetLastNumberOfCui() - Method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitionerTest
Test get last number of cui.
testGetLatestBaseline() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetLatestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetLatestBaseline() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetLexevsBuildTimestamp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetLexevsBuildVersion() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetListOfCodingSchemeVersionsUsedInResolution() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetListOfCodingSchemeVersionsUsedInResolution() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testGetLoadPreferencesObject() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
testGetMap() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
testGetMapping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testGetMappingCodingSchemesEntityParticipatesIn() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testGetMappingCodingSchemesEntityWithNamespaceParticipatesIn() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testGetMappings() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetMysqlCreateScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get mysql create script.
testGetMysqlDropScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get mysql drop script.
testGetNextList() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testGetNextSmallerList() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testGetNodesPath() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
testGetNodespath() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
 
testGetOracleCreateScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get oracle create script.
testGetOracleDropScript() - Method in class org.lexgrid.loader.setup.ScriptFactoryTest
Test get oracle drop script.
testGetPartitionNumberForInputRow() - Method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitionerTest
Test get partition number for input row.
testGetPredicateUid() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
testGetPropertiesForPropertyName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetPropertyQualifierValueForSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetPropertyQualifierValueForSource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
testGetRelationsIdsForCodingSchemeId() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
 
testGetResolvedCodedNodeReferenceByCodeAndNamespaceCheckForTypes() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetResolvedCodedNodeReferenceByCodeAndNamespaceCheckForTypesMultiple() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testGetResourceSummariesTargetRestrictionCorrectNumRemaining() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testGetResourceSummariesTargetRestrictionCorrectNumRemainingNoSort() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testGetRootsWithAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetRootsWithNoAssociationRestrictionIndividually() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetRootsWithNoAssociationRestrictionTogether() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetRootsWithOneWrongOneRightAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetRootsWithQualifierRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetRootsWithWrongAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetSchemeUid() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
testGetSortForExtensionName() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test get sort for extension name.
testGetSourceAssertedValueSetEntitiesForEntityCode() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGetSourceAssertedValueSetEntitiesForURI() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetforEntityCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetforEntityCode() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testGetSourceAssertedValueSetforValueSetMemberEntityCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetIteratorForURI() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testgetSourceAssertedValueSetsForConceptReference() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetsforTextSearch() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetTopNodeForEntityCode() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGetSourceAssertedValueSetTopNodesForRootCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetSourceAssertedValueSetTopNodesForRootCode() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testGetSubConcepts() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImplTest
 
testGetSubConcepts() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImplTest
 
testGetSupporteConceptDomainValueFromName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetSupportedClassComparators() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test get supported class comparators.
testGetSupportedHierarchyUriMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetSupportedNameSpace() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetSupportedNamespaceUriMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetSupportedNamespaceUriMapNullEquivalentCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testGetSupportedPropertiesOfTypePresentation() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.LexBIGServiceConvenienceMethodsImplTest
fix for gForge # 24699.
testGetSupportedSources() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformerTest
 
testGetSystemRelease() - Method in class org.LexGrid.LexBIG.Impl.History.NCIThesaurusHistoryServiceTest
 
testGetSystemRelease() - Method in class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
testGetSystemReleaseForUri() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testGetTailsWithAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTailsWithNoAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTailsWithOneWrongOneRightAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTailsWithWrongAssociationRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTreeCurrentFocus() - Method in class org.lexevs.tree.model.LexEvsTreeTest
 
testGetTreeCurrentFocus() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeTest
 
testGetTriplesForMappingRelationsCount() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUids() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUids() - Method in class org.lexevs.paging.codednodegraph.TripleUidIteratorTest
 
testGetTripleUidsContainingObjectCount() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCount() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithAnonymousRestrictionOnlyAnonymous() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithAnonymousRestrictionOnlyNonAnonymous() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithAnonymousRestrictionWithNone() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithBadQualifierName() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithEntityTypeRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithMultipleEntityTypeRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithQualifierName() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithQualifierNameAndBadValue() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithQualifierNameAndValue() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithRestrictToCode() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithRestrictToCodesystem() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectCountWithWrongEntityTypeRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectWithRestrictToCodesystem() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsContainingSubjectWithSort() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithOne() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithOneSourceAndTarget() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithOneSourceAndTargetAndOrInvalid() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithOneSourceAndTargetAndOrSource() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithOneSourceAndTargetAndOrTarget() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerAndCodesWithTwo() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerNoSorts() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerQualifierSortAsc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerQualifierSortDesc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerSourceEnityCodeSortAsc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerSourceEnityCodeSortDesc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerSourceEnityDescriptionSortAsc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerSourceEnityDescriptionSortDesc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerTargetEnityCodeSortAsc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testGetTripleUidsForMappingRelationsContainerTargetEnityCodeSortDesc() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testgetUids() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetIndexSupport
 
testgetUids() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetTagTest
 
testGetUriForName() - Method in class org.LexGrid.LexBIG.Utility.ServiceUtilityTest
 
testGetUUIDNotNull() - Method in class org.lexevs.dao.database.key.Java5UUIDKeyGeneratorTest
Test get uuid not null.
testGetUUIDUnique() - Method in class org.lexevs.dao.database.key.Java5UUIDKeyGeneratorTest
Test get uuid unique.
testGetValueSetCodeForUri() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testGetValueSetDefinition() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testGetValueSetEntities() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGetValueSetEntityCount() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGetValueSetEntityUidForTopNodeEntityCode() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGetValueSetEntityUids() - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDaoTest
 
testGoodRootNode() - Method in class org.lexgrid.loader.meta.processor.support.MetaRootNodeResolverTest
 
testGrouping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testHandleNoCode() - Method in class org.lexgrid.loader.rrf.data.entity.DefaultMrconsoNoCodeHandlerTest
Test handle no code.
testHandleValidCode() - Method in class org.lexgrid.loader.rrf.data.entity.DefaultMrconsoNoCodeHandlerTest
Test handle valid code.
testHasNext() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testHasNext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testHasNext() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImplTest
Test has next.
testHasNextWithEmptyCodeHolder() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImplTest
Test has next with empty code holder.
testHasNextWithFilter() - Method in class org.LexGrid.LexBIG.Impl.helpers.ResolvedConceptReferencesIteratorImplTest
Test has next with filter.
testHasNextWithOne() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testHasNextWithOneAnd() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testHasNextWithZero() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testHasQualifiers() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testHelp(LexBIGService, String, String, LocalNameList, int) - Static method in class org.LexGrid.LexBIG.Impl.test.SimpleTests
 
testHelper() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test helper.
testiIsIndexNameRegisteredWithTheSystem() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsRemoveTest
 
testIndexCreationAndRegistration() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateIndexTest
 
testIndexDeletionAndOverwrite() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsWriteOverIndexTest
 
testIndexMismatchToRegistry() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.TestSearchExtensionImplMethods
 
TestingRegistryXmlToDatabaseTransfer() - Constructor for class org.lexevs.registry.service.DatabaseRegistryTest.TestingRegistryXmlToDatabaseTransfer
 
testInit() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.ResourceManagerTest
 
testInitDefinitionEntry() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
testInitEntityReference() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
testInitValueSetDefintion() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
testInsertAssociationPredicate() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test insert association predicate.
testInsertAssociationQualifier() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test insert association qualifier.
testInsertAssociationSource() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test insert association source.
testInsertAssociationSource() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
 
testInsertCached() - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplateTest
Test insert cached.
testInsertCodingScheme() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testInsertCodingScheme() - Method in class org.lexgrid.loader.writer.CodingSchemeWriterTest
 
testInsertCodingSchemeEntry() - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDaoTest
Test insert coding scheme entry.
testInsertCodingSchemeLocalName() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test insert coding scheme local name.
testInsertCodingSchemeSource() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test insert coding scheme source.
testInsertCodingSchemeWithEntityAndProperty() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
Test insert coding scheme with entity and property.
testInsertCodingSchemeWithEverything() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
Test insert coding scheme with everything.
testInsertDb2Prefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManagerTest
Test insert db2 prefix.
testInsertDependentChanges() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
testInsertDependentChangesWithOneInHistory() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
testInsertHsqldbPrefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManagerTest
Test insert hsqldb prefix.
testInsertMappings() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test insert mappings.
testInsertMysqlPrefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManagerTest
Test insert mysql prefix.
testInsertNciChangeEvent() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testInsertOraclePrefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManagerTest
 
testInsertOrUpdateURIMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testInsertPostgresPrefix() - Method in class org.lexgrid.loader.setup.JobRepositoryManagerTest
Test insert postgres prefix.
testInsertRelations() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test insert relations.
testInsertRelations() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
Test insert relations.
testInsertRelationsWithTwoAssociationTargets() - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
Test insert relations with two association targets.
testInsertSupportedHierarchy() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testInsertSystemRelease() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testInsertTransitiveClosure() - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDaoTest
Test insert transitive closure.
testInsertTwoCached() - Method in class org.lexgrid.loader.dao.template.CachingSupportedAttribuiteTemplateTest
 
testInsertURIMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test insert uri map.
testIntersection() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testIntersectionSubTree() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testIRIParsingFromRendererResultsLEXEVS_684() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testIsCodeInGraph() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testIsComparatorRegisteredForClass() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test is comparator registered for class.
testIsEntityAssnsToEQualsIndexPresent() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsEntityAssnsToEQualsIndexPresentHigherVersion() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsEntityAssnsToEQualsIndexPresentNotHighEnoughVersion() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsEntryStateIdInAssociationTable() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsEntryStateIdInAssociationTableHigherVersion() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsEntryStateIdInAssociationTableNotHighEnoughVersion() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testIsExtensionAvailable() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testIsInCycleMultipleCharsFalse() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test is in cycle multiple chars false.
testIsInCycleOneCharFalse() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test is in cycle one char false.
testIsInCycleOneCharTrue() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test is in cycle one char true.
testIsMappingCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testIsMappingCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeIteratorRndTrp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeMapping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeMappingWthRestriction() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeMappingWthRestrictionIterator() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsMappingCodingSchemeRndTrip() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionSerializationTest
 
testIsPublishableValueSet() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testIsSerializable() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexCapabilitiesTest
Test is serializable.
testIsSerializable() - Method in class org.lexevs.dao.indexer.lucene.query.SerializableRegexQueryTest
Test is serializable.
testIsSingletion() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
testIterate() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testIterate() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testIterate() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testIteratedChild() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIteratedChild() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIteratedChildNotCountOnly() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIteratedChildNotCountOnly() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIteratedChildParent() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIteratedChildParent() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThrough() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThrough() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThroughLimitOne() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThroughLimitOne() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThroughLimitTwo() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateThroughLimitTwo() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateWithBigPage() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testIterateWithBigPage() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testIterateWithPopulatedCache() - Method in class org.lexevs.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateWithPopulatedCache() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.dao.iterator.PagingChildNodeIteratorTest
 
testIterateWithSmallPage() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testIterateWithSmallPage() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testIteratorRefresh() - Method in class org.lexevs.dao.indexer.utility.ConcurrentMetaDataTest
 
testJsonNameSpaceExists() - Method in class org.lexevs.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
testJsonNameSpaceExists() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
testJsonNoAnymousNodes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeJsonNameSpaceTest
 
testKindDef() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testLDAPConnection(String, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPUtility
 
testListAllSourceAssertedValueSets() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testListAllValueSets() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testListCodeRelationships() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testListCodeRelationshipsAnonymousRestrictionFalse() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsAnonymousRestrictionOneWrong() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsAnonymousRestrictionTrue() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsEntityTypeRestriction() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsEntityTypeRestrictionBothWrong() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsEntityTypeRestrictionOneWrong() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsEntityTypeRestrictionTwoTypes() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsNoTransitive() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsWithTransitive() - Method in class org.lexevs.dao.database.ibatis.codednodegraph.IbatisCodedNodeGraphDaoTest
 
testListCodeRelationshipsWithTransitive() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testListCodeRelationshipsWithTransitiveWithContainerName() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
testListCodeRelationshipsWithTransitiveWithWrongContainerName() - Method in class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
TestLoaderPreferences - Class in org.LexGrid.LexBIG.Impl.dataAccess
 
TestLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.TestLoaderPreferences
 
TestLoadMrMap2Mappings - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestLoadMrMap2Mappings() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestLoadMrMap2Mappings
 
TestLoadMrMapOneMapping - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestLoadMrMapOneMapping() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestLoadMrMapOneMapping
 
testLoadOneMappingFromMRMAP() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestLoadMrMap2Mappings
 
testLoadOneMappingFromMRMAP() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestLoadMrMapOneMapping
 
testLogger() - Method in class org.lexgrid.loader.logging.LgMessageDirectorIFFactoryTest
 
testLuceneDirectoryCreatorExists() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
testLuceneQuery() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testLuceneQuery() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testLuceneQueryManyResults() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testLuceneQuerySelection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
TestManifestBreakDown - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestManifestBreakDown() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestManifestBreakDown
 
TestManifestSetup - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestManifestSetup() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestManifestSetup
 
TestMapParse - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestMapParse() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMapParse
 
testMigration() - Method in class org.lexevs.registry.service.DatabaseRegistryTest
 
TestMrMapMappingResolution - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestMrMapMappingResolution() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMrMapMappingResolution
 
testMrMapMappingResolutionMappingExtension() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMrMapMappingResolution
 
testMrMapProcessor() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapProcessorTest
 
TestMRMapResolveGraphOnly - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestMRMapResolveGraphOnly() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMRMapResolveGraphOnly
 
testMultipleIndexCreation() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCleanupIndexesTest
 
testMultipleIndexCreation() - Method in class org.lexevs.dao.index.operation.DefaultLexEVSIndexOperationsCreateMultipleIndexesTest
 
testMultipleNamespace() - Method in class org.lexevs.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
testMultipleNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
testMultipleNamespaceWrongNamespace() - Method in class org.lexevs.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
testMultipleNamespaceWrongNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.MultipleNamspaceErrorLEXEVS_598_Test
 
testNamespace() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
 
testNamespace() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Test namespace.
testNegativeSearch() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testNext() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testNextMore() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIteratorTest
 
testNodeListCleaning() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
testNodeReduction() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
testNotEqual() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.TestEqualsCodingSchemeReference
 
testNotEquals() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionTest
Test not equals.
testNotMappingCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testNotNull() - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolverTest
Test not null.
testNotNull() - Method in class org.lexgrid.loader.rrf.data.association.MrrelRuiKeyResolverTest
Test not null.
testNotNull() - Method in class org.lexgrid.loader.rrf.partition.MrrelFilePartitionerTest
Test not null.
testNotNull() - Method in class org.lexgrid.loader.rrf.partition.RrfFilePartitionerTest
Test not null.
testOneLevel() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
testOrder() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest
 
testOrderWithSuite() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest
 
testPageLessResultsReturnedPageSize() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testPageLessResultsReturnedPageSize() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testPageMoreResultsReturned() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testPageMoreResultsReturned() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testPageMoreResultsReturnedOddPageSize() - Method in class org.lexevs.paging.AbstractPageableIteratorTest
 
testPageMoreResultsReturnedOddPageSize() - Method in class org.lexevs.paging.AbstractRefereshingPageableIteratorTest
 
testParams1() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testParseDatabaseVersion() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersionTest
Test parse database version.
testParseFloatFromTableVersion() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
 
testParseTargetCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMapParse
 
TestPasswordEncryption - Class in org.LexGrid.LexBIG.Impl.dataAccess
 
TestPasswordEncryption() - Constructor for class org.LexGrid.LexBIG.Impl.dataAccess.TestPasswordEncryption
 
testPreferredPresentation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
 
testPreferredPresentation() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
 
testPresentationContains() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testPresentationContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationContainsQuerySelection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
testPresentationContainsRestrictToOneScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationContainsRestrictToTwoSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationCount() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
Test presentation count.
testPresentationCount() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
Test presentation count.
testPresentationExact() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testPresentationExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationExactLC() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationExactQuerySelection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
testPresentationExactRedux() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationExactRestrictToOneScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationExactRestrictToTwoSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPresentationNotNull() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
 
testPresentationText() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DefinitionPropertyDataTestIT
 
testPresentationText() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.PresentationPropertyDataTestIT
 
testProcess() - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolverTest
Test process.
testProcess() - Method in class org.lexgrid.loader.processor.BasicListProcessorTest
Test process.
testProcess() - Method in class org.lexgrid.loader.processor.PreFilteringListProcessorTest
Test process.
testProcessCodingScheme() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testProcessComposite() - Method in class org.lexgrid.loader.processor.ClassifierCompositeProcessorTest
Test process composite.
testProcessCompositeList() - Method in class org.lexgrid.loader.processor.ClassifierCompositeProcessorTest
Test process composite list.
testProcessForDiff() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testProcessFormattedExpression() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testProcessMrSatRow() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.ProcessMrSatRowTest
 
testProcessMrSatToRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.ProcessMrSatToRelationsTest
 
testProcessPathForVersion() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testPropDef() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testPropertyContains() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testPropertyContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyContainsBoundary1() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyContainsBoundary2() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyContainsBoundary3() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyContainsQuerySelection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
testPropertyExact() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testPropertyExact() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyExactQuerySelection() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.BuildMatchAlgorithmQueryTest
 
testPropertyExactRedux() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyExactRestrictToOneScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyExactRestrictToTwoSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testPropertyForAnnotationPropertySource() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWLUnitTests
 
testPutInCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test put in cache.
testPutInCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test put in cache.
testPutTwiceInCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test put twice in cache.
testPutTwiceInCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test put twice in cache.
testQualDef() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testQueryAfterCreation() - Method in class org.lexevs.dao.index.operation.SameSessionLoadandQueryTest
 
testQueryForContainsBlockJoin() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testReader() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMapReaderTest
 
testRegistry() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.RegistryTest
 
testRelations() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGridTest
 
testRemoveAllCodingSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.CleanUpResolvedValueSetUpdateLoads
 
testRemoveAllValueSetDefintions() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.CleanUpResolvedValueSetUpdateLoads
 
TestRemoveMrMap2Loads - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestRemoveMrMap2Loads() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestRemoveMrMap2Loads
 
testRemoveMrMap2Mapping() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestRemoveMrMap2Loads
 
TestRemoveMrMapOneLoad - Class in edu.mayo.informatics.lexgrid.convert.directConversions.mrmap
 
TestRemoveMrMapOneLoad() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestRemoveMrMapOneLoad
 
testRemoveMrMapOneMapping() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestRemoveMrMapOneLoad
 
testRemoveNciHistoryResource() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
 
testResolutionToMappedSchemes() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMrMapMappingResolution
 
testResolve() - Method in class org.lexgrid.loader.rrf.data.association.MrrelRuiKeyResolverTest
Test resolve.
testResolveConceptReference() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
Test resolve concept reference.
testResolveConceptReferenceOnAmbigiousCode() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
Test resolve concept reference on ambigious code.
testResolveConceptReferenceOnNonAmbigiousCode() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsTest
Test resolve concept reference on non ambigious code.
testResolveLabels() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testResolveMapping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingAssociationCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingGet() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingGetOver() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingNoContainerName() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingSourceAndTargets() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingSourceAndTargetsHasEverything() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithCodeDifferentNamespaceInSource() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithCodeDifferentNamespaceInTarget() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestriction() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionEither() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionEitherCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionEitherFromBothFromSourceAndTarget() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSource() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTarget() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTargetAndBothWrongEither() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTargetAndBothWrongEitherCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTargetAndEither() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTargetAndEitherCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceAndTargetCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionSourceCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionTarget() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionTargetCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionWithSortAsc() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionWithSortAsCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionWithSortDesc() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveMappingWithRestrictionWithSortDescCount() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResolveRelationshipsAssociationQualifiersContent() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test resolve relationships association qualifiers content.
testResolveRelationshipsAssociationQualifiersSize() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test resolve relationships association qualifiers size.
testResolveRelationshipsAssociationsCount() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test resolve relationships associations count.
testResolveRelationshipsAssociationsNames() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test resolve relationships associations names.
testResolveRelationshipsCount() - Method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethodsGraphVersionTests
Test resolve relationships count.
testResolveUnlinkedGraph() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestMRMapResolveGraphOnly
 
testResolveValueSetDefinitionFromOWL2() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testResourceExists() - Method in class org.lexevs.dao.indexer.utility.LuceneMultiDirectoryFactoryTest
 
testRestartUmlsLoad() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
Test single db restart umls load.
testRestrictPropertyTypeReturns() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
testRestrictToAssertedSchemeAndPropertyContainsEmpty() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemeCodeExactMatch() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemePopulated() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemePopulatedExternal() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemesCodeExactMatchAppearsInOneOfTwoSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemesCodeExactMatchAppearsInTwoSchemes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToAssertedSchemesPopulated() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedValueSetSearchExtensionTest
 
testRestrictToRelationshipBadRelationship() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testRestrictToRelationshipNoSorting() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testRestrictToRelationshipNoSortingTwoAssociations() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testRestrictToRelationshipWithSorting() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.MappingExtensionImplTest
 
testResultLimit() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImplTest
 
testRoleDef() - Method in class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
testRootsLength() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyHierarchyRootsTestIT
 
testRootsLength() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.HierarchyRootsTestIT
 
testRootsNotNull() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabularyHierarchyRootsTestIT
 
testRootsNotNull() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.HierarchyRootsTestIT
 
testSchemeData() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
testSchemeData() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testSearchAll() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSearchAllEmptyIncludes() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
TestSearchExtensionImplMethods - Class in org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search
 
TestSearchExtensionImplMethods() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.TestSearchExtensionImplMethods
 
testSearchExternalRVSets() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.ExternalResolvedValueSetIndexingTest
 
testSearchInactive() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSearchPerformance() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test search performance.
testSerialization() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocIteratoSerializationTest
 
testSerializationHasScoreDoc() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocIteratoSerializationTest
 
testSerializeDeserializeCnsWithRestrictToMatchingProperties() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetSerializationTest
 
testSetPreferred() - Method in class org.lexgrid.loader.data.property.GroupByLanguagePreferredSetterTest
Test set preferred.
testSetUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.DataLoadTestBase
 
testSetUp() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.DataLoadTestBase
 
testSetUP() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.TestManifestSetup
 
testSetup() - Method in class org.lexevs.system.service.LexEvsResourceManagingServiceTest
Test setup.
testSetUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearchTest
Test set up.
testSetUp() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test set up.
testSetupListener() - Method in class org.lexgrid.loader.listener.SetupListenerTest
 
testSimpleSearch() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchCaseInsensitive() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchCaseInsensitiveAndWildcard() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchContains() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchCorrectFields() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchDefault1() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchDefault2() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchExactCode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchExactCodeAndNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchExactCodeAndWrongNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchExcludeCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchExcludeCodingSchemeNoneReturned() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchForNonParentDocWithoutAnonymous() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchFuzzyAndNegationWithGrouping() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchLimitedToCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchLimitedToDifferentCodingScheme() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchLimitedWithIncludeAndExclude() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchLimitedWithIncludeAndExcludeAllExcluded() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchNone() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchWithAnonymousExclude() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchWithAnonymousInclude() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchWithInactiveExclude() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSimpleSearchWithInactiveInclude() - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.SearchExtensionImplTest
 
testSingleSchemeQuery() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testSingleSchemeQuerySpecialParenthesesQuery() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testSkip() - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicyTest
Test skip.
testSkipHcdWrongSab() - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicyTest
Test skip hcd wrong sab.
testSkipNoHcd() - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicyTest
Test skip no hcd.
testSortDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.Sort.AbstractSortTest
Test sort description.
testSourceAssociatedConceptCode() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Test source associated concept code.
testSourceAssociatedConceptCount() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Test source associated concept count.
testSourceAssociationName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Test source association name.
testSourceCount() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Test source count.
testSQLConnection(String, String, String, String, String) - Static method in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLUtility
 
testStartUpLexBigBadConfig() - Method in class org.LexGrid.LexBIG.Impl.helpers.ConfigureTest
 
testStepListener() - Method in class org.lexgrid.loader.listener.StepCompletionListenerTest
 
testSubConceptsMultiHierarchy() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImplTest
 
testSystemReleaseForDateBetween() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testSystemReleaseForDateEqualsFirst() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testSystemReleaseForDateEqualsSecond() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testSystemReleaseForDateWithThree() - Method in class org.lexevs.dao.database.ibatis.ncihistory.IbatisNciHistoryDaoTest
 
testTargetCount() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.EntityAssnsToEntityDataTestIT
Test target count.
testTooSmallPrefix() - Method in class org.lexevs.dao.database.prefix.CyclingCharDbPrefixGeneratorTest
Test too small prefix.
testTransform() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTransformEntityToRCR() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTransformerIntegration() - Method in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
testTreeNodeGetCode() - Method in class org.lexevs.tree.model.LexEvsTreeNodeTest
 
testTreeNodeGetCode() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeTest
 
testTreeNodeGetEntityDescription() - Method in class org.lexevs.tree.model.LexEvsTreeNodeTest
 
testTreeNodeGetEntityDescription() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeTest
 
testTreeNodeGetNamespace() - Method in class org.lexevs.tree.model.LexEvsTreeNodeTest
 
testTreeNodeGetNamespace() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNodeTest
 
testTruncateDefName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTruncateDefNameforCodingSchemeName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTruncateNames() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTruncateOneName() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.AssertedValueSetServicesTest
 
testTwoDifferentInCache() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test two different in cache.
testTwoDifferentInCache() - Method in class org.lexevs.cache.MethodCachingProxyTest
Test two different in cache.
testTwoLevel() - Method in class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilderTest
 
testTwoSchemeQuery() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testTwoSchemeQueryBlockJoin() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testTwoSchemeQueryForPresentationBlockJoin() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testTwoSchemeQueryPlusAnonBlockJoin() - Method in class org.lexevs.dao.index.operation.MultiIndexTemplateTest
 
testUmlsLoad() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
Test single db umls load.
testUmlsMultipleSABsLoad() - Method in class org.lexgrid.loader.umls.UmlsBatchLoaderTest
 
testUnCachableMethod() - Method in class org.lexevs.cache.MethodCachingInterceptorTest
Test un cachable method.
testUnion() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImplTest
 
testUpdateCodingSchemeById() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test update coding scheme by id.
testUpdateCodingSchemeSource() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
 
testUpdateEntityEntityDescription() - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDaoTest
 
testUpdateUriMap() - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDaoTest
Test distinct namespaces.
testUri() - Method in class org.LexGrid.LexBIG.Impl.helpers.lazyloading.LazyLoadableCodeToReturnTest
Test uri.
testValidateSortOptionForClass() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test validate sort option for class.
testValidateSortOptionForClasses() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test validate sort option for classes.
testValidateSortsForClasses() - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparatorTest
Test validate sorts for classes.
testValueParsingMethod() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OWL2UnitTests
 
testWalkTreeGetSubConcepts() - Method in class org.lexevs.tree.service.PathToRootTreeServiceImplTest
 
testWalkTreeGetSubConcepts() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.service.PathToRootTreeServiceImplTest
 
TestXMLProcessor - Class in org.lexgrid.lexevs.ndfrt.test
 
TestXMLProcessor() - Constructor for class org.lexgrid.lexevs.ndfrt.test.TestXMLProcessor
 
Text - Class in org.LexGrid.commonTypes
The value of an entityDescription, property, etc.
Text() - Constructor for class org.LexGrid.commonTypes.Text
 
text - Variable in class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
text - Variable in class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
text - Variable in class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
Text_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
A loader for delimited text type files.
textBoxFactory(Composite) - Method in class org.LexGrid.LexBIG.gui.edit.AbstractEditDialog
 
textBuilder - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
TextComparator() - Constructor for class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem.TextComparator
 
TextContent - Class in org.LexGrid.LexBIG.gui.displayResults
This class makes it easier to display formatted text in a SWT StyledText.
TextContent(Display) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
TextDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class TextDescriptor.
TextDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.TextDescriptor
 
TextLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading Text files into LexBIG.
TextLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.TextLoader
 
TextLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
Class to load a Text files into the LexBIG API.
TextLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
TextToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
Converstion tool for loading a delimited text format into SQL.
TextToSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextToSQL
 
TextUtility - Class in edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon
Common bits for the Text -> foo loaders.
TextUtility() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.TextUtility
 
THREAD_LOCAL - Static variable in class org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementerFactory
 
throwExceptionOrReturnDefault(T, O, boolean) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Throw exception or return default.
thrown - Variable in class org.lexevs.dao.index.operation.OrphanedIndexTest
 
TIME - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
TIMESTAMP - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
TITLE_NAME - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
TITLE_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
toAssociatedConceptKey(String, AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.paging.callback.AbstractCycleDetectingCallback
To associated concept key.
toBruteForceMode() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
toCamelCase(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
toCamelCase(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
toCodeNamespacePair(ConceptReference) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
toCodeNamespacePair(List<ConceptReference>) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
toCodingScheme(CodingScheme) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.CodingScheme
 
toCommaDelimitedWithQuotes(String[]) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
Converts the given string array to a single string, separating each value by comma and embedding quotes before and after each value.
toDatabaseType(String) - Static method in enum org.lexevs.dao.database.type.DatabaseType
 
toDbEntry(RegistryEntry) - Static method in class org.lexevs.registry.model.RegistryEntry
To db entry.
toexpr - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
toid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
value of TOID column from MRMAP.RRF
tokenize(Analyzer, String, String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchExtensionImpl
 
tokenizeBySpace(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.AbstractSearch
Tokenize by space.
toMultiLine(String) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
toMultiLine(String) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
toNMToken(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
toNMTokenNotNeeded(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGUtils
 
toNodeList(ConceptReference, boolean, boolean, int, int) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
toNodeList(ConceptReference, boolean, boolean, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractQueryBuildingCodedNodeGraph
 
toNodeList(ConceptReference, boolean, boolean, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.IntersectGraph
 
toNodeList(ConceptReference, boolean, boolean, int, int) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
toNodeList(ConceptReference, boolean, boolean, int, int) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Transform the graph into a simple of list of code references, removing all association information.
ToNodeListResolvedConceptReferencesIteratorDecorator - Class in org.LexGrid.LexBIG.Impl.helpers
 
ToNodeListResolvedConceptReferencesIteratorDecorator(ResolvedConceptReferencesIterator, CodeHolder, CodedNodeSet.ActiveOption) - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator
 
ToNodeListResolvedConceptReferencesIteratorDecorator.RemoveInactiveRunner - Class in org.LexGrid.LexBIG.Impl.helpers
 
ToNodeListResolvedConceptReferencesIteratorDecorator.ToResolvedConceptReferenceRunner - Class in org.LexGrid.LexBIG.Impl.helpers
 
toOwlOntology(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
TOP_NODE_SMQ - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
TOP_NODE_SOC - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
topClasses - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
toPlainText() - Method in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
TopResource - Interface in edu.mayo.informatics.resourcereader.core.IF
Blank TopResource interface
toProcess(Mrrel) - Method in class org.lexgrid.loader.meta.processor.support.SelfReferencingAssocQualResolver
 
toProcess(I) - Method in class org.lexgrid.loader.processor.support.AbstractAssociationQualifierResolver
 
toProcess(T) - Method in class org.lexgrid.loader.processor.support.AbstractNullValueSkippingResolver
 
toProcess(I) - Method in class org.lexgrid.loader.processor.support.AbstractPropertyQualifierResolver
 
toProcess(T) - Method in interface org.lexgrid.loader.processor.support.OptionalResolver
 
toRegistryEntry(XmlRegistry.DBEntry) - Static method in class org.lexevs.registry.model.RegistryEntry
To registry entry.
toRegistryEntry(XmlRegistry.HistoryEntry) - Static method in class org.lexevs.registry.model.RegistryEntry
To registry entry.
tores - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
toResolvedConceptReference(CodeToReturn) - Method in class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator.ToResolvedConceptReferenceRunner
 
toResolvedConceptReferenceList() - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
ToResolvedConceptReferenceRunner() - Constructor for class org.LexGrid.LexBIG.Impl.helpers.ToNodeListResolvedConceptReferencesIteratorDecorator.ToResolvedConceptReferenceRunner
 
TORSAB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
TORSAB - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
torule - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
toScoreWords(String) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
Return words from the given string to be used in scoring algorithms, in order of occurrence and ignoring duplicates, stop words, whitespace and common separators.
toShortString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
tosid - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
toSingleLine(String) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
toSingleLine(String) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
toSkip(Mrrel) - Method in class org.lexgrid.loader.meta.reader.support.MetaMrrelRelationSkipPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.meta.reader.support.MetaMrsatAssQualSkipPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.meta.reader.support.MrsatPropertyQualifierSkipPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.meta.reader.support.MrsatPropertySkipPolicy
 
toSkip(I) - Method in class org.lexgrid.loader.reader.support.CompoundSkipPolicy
 
toSkip(Object) - Method in class org.lexgrid.loader.reader.support.NeverSkipPolicy
Utility Class -- use when you never want to skip any records;.
toSkip(I) - Method in interface org.lexgrid.loader.reader.support.SkipPolicy
To skip.
toSkip(Mrsat) - Method in class org.lexgrid.loader.rrf.data.property.DefaultMrsatUtility
 
toSkip(Mrsat) - Method in interface org.lexgrid.loader.rrf.data.property.MrsatUtility
To skip.
toSkip(Mrconso) - Method in class org.lexgrid.loader.rrf.reader.support.MrconsoCuiNumberBasedSkipPolicy
 
toSkip(Mrdef) - Method in class org.lexgrid.loader.rrf.reader.support.MrdefCuiNumberBasedSkipPolicy
 
toSkip(Mrdoc) - Method in class org.lexgrid.loader.rrf.reader.support.MrdocOnlyAssociationsSkipPolicy
 
toSkip(Mrdoc) - Method in class org.lexgrid.loader.rrf.reader.support.MrdocRelationNameSkipPolicy
 
toSkip(Mrhier) - Method in class org.lexgrid.loader.rrf.reader.support.MrhierHcdSkipPolicy
 
toSkip(Mrrel) - Method in class org.lexgrid.loader.rrf.reader.support.MrrelCuiNumberBasedSkipPolicy
 
toSkip(Mrrel) - Method in class org.lexgrid.loader.rrf.reader.support.MrrelRelationBasedSkipPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.rrf.reader.support.MrsatCuiNumberBasedSkipPolicy
 
toSkip(MrSat) - Method in class org.lexgrid.loader.rrf.reader.support.MrsatNoCodeSkipPolicy
 
toSkip(Mrsty) - Method in class org.lexgrid.loader.rrf.reader.support.MrstyCuiNumberBasedSkipPolicy
 
toSkip(I) - Method in class org.lexgrid.loader.umls.reader.support.AbstractSabSkippingPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.umls.reader.support.MrsatAssocQualSkipPolicy
 
toSkip(Mrsat) - Method in class org.lexgrid.loader.umls.reader.support.MrsatSkipPolicy
 
toSkip(Mrhier) - Method in class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicy
 
toSourceFormat(String) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGUtils
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.SystemReleaseSurvey
 
toString() - Method in interface edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.DatabaseRecord
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlgt_hlt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_hlt_pt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_intl_ord
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_llt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_mdhier
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_history
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_pt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_content
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_smq_list
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_soc_hlgt
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.LG2OBO
Generate the OBO 1.2 representation of the Lexgrid EMF content
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Association
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.TextCommon.Concept
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.Association
Deprecated.
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.SABString
Deprecated.
 
toString() - Method in exception edu.mayo.informatics.lexgrid.convert.exceptions.ConnectionFailure
 
toString() - Method in exception edu.mayo.informatics.lexgrid.convert.exceptions.UnexpectedError
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.AbstractError
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
toString() - Method in class edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport
 
toString() - Method in class edu.mayo.informatics.resourcereader.core.IF.ResourceType
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviation
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOAbbreviations
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOContents
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBODbxref
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOHeader
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstance
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOInstances
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelation
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBORelations
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOResourceManifest
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerm
 
toString() - Method in class edu.mayo.informatics.resourcereader.obo.OBOTerms
 
toString() - Method in class org.lexevs.dao.database.schemaversion.LexGridSchemaVersion
 
toString() - Method in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
toString() - Method in class org.lexevs.dao.index.version.LexEvsIndexFormatVersion
 
toString() - Method in class org.lexevs.dao.indexer.api.generators.DocumentFromStringsGenerator
 
toString() - Method in class org.lexevs.tree.model.LexEvsTreeNode
Deprecated.
 
toString() - Method in enum org.LexGrid.commonTypes.types.EntityTypes
Method toString.
toString() - Method in enum org.LexGrid.commonTypes.types.PropertyTypes
Method toString.
toString() - Method in class org.LexGrid.custom.relations.TerminologyMapBean
 
toString() - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
Method toString.
toString() - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
Method toString.
toString() - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
Method toString.
toString() - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
Method toString.
toString() - Method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
Method toString.
toString() - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeGraph
 
toString() - Method in class org.LexGrid.LexBIG.gui.codeSet.CodedNodeSet
 
toString() - Method in class org.LexGrid.LexBIG.gui.CodeSystemUserMetaData
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.Anonymous
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.Association
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.DirectionalName
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.MatchingCode
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.MatchingDesignation
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.MatchingProperties
 
toString() - Method in class org.LexGrid.LexBIG.gui.restrictions.Status
 
toString() - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl.QueryBuilder
 
toString(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.Search.query.SpanWildcardQuery
 
toString() - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode
 
toString() - Method in class org.LexGrid.LexBIG.Impl.helpers.CodeToReturn
 
toString() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociation
 
toString() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
toString() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNode
 
toString() - Method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.PropertyType
 
toString() - Method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
Method toString.
toString(Object) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns a string representation of the object.
toString(Object, String) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns a string representation of the object, indented according to the specified parameter values and wrapped at a predetermined default length suitable for most displays.
toString(Object, String, int) - Static method in class org.LexGrid.LexBIG.Utility.ObjectToString
Returns a string representation of the object, with text and descriptions indented and wrapped according to the specified parameter values.
toString(Object) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns a string representation of the object.
toString(Object, String) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns a string representation of the object, indented according to the specified parameter values and wrapped at a predetermined default length suitable for most displays.
toString(Object, String, int) - Static method in class org.LexGrid.LexBIG.Utility.VSDObjectToString
Returns a string representation of the object, with text and descriptions indented and wrapped according to the specified parameter values.
toString() - Method in class org.lexgrid.loader.rrf.model.Mrsat
 
toString() - Method in enum org.LexGrid.util.assertedvaluesets.AssertedValueSetServices.BaseName
 
toString() - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
toString() - Method in enum org.LexGrid.valueSets.types.DefinitionOperator
Method toString.
toString() - Method in enum org.LexGrid.versions.types.ChangeType
Method toString.
TotalEntityCompositeGroupComparator - Class in org.lexgrid.loader.meta.reader.support
The Class MrconsoMrsatCompositeGroupComparator.
TotalEntityCompositeGroupComparator() - Constructor for class org.lexgrid.loader.meta.reader.support.TotalEntityCompositeGroupComparator
 
toTripleStore(CodingScheme, CodedNodeGraph, CodedNodeSet, Writer, LgMessageDirectorIF, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.exporters.LexGridToOwlRdfConverter
 
totype - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MrMap
 
TOVSAB - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MappingRelationsUtil
 
TOVSAB - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
toWords(String, String, boolean, boolean) - Method in class org.LexGrid.LexBIG.example.FindCodesForDescription
Return words from the given string in order of occurrence, normalized to lower case, separated by the given delimiters (regular expression), and optionally removing stop words and duplicates.
toWords(String, boolean) - Method in class org.LexGrid.LexBIG.example.MetaMatch
Returns an array containing the individual white-space delimited words contained by the given string, normalizing to lowercase and optionally removing stop words.
toWords(String) - Method in class org.LexGrid.LexBIG.example.ScoreTerm
Return the words comprising the given string, in order ignoring duplicates, common separators and punctuation.
TransferScheme - Class in org.LexGrid.LexBIG.admin
Assists in transferring a terminology from one server to another.
TransferScheme() - Constructor for class org.LexGrid.LexBIG.admin.TransferScheme
 
transform(Entity, String, String, Entities, HashMap<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
transform(AssociationList) - Method in class org.lexevs.tree.transform.AssociationListToTreeNodeList
Deprecated.
 
transform(I) - Method in interface org.lexevs.tree.transform.Transformer
Deprecated.
Transform.
transform(Set<AbsoluteCodingSchemeVersionReference>, ScoreDocTransformer, Iterable<ScoreDoc>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.ScoreDocTransformerExecutor
 
transform(Set<AbsoluteCodingSchemeVersionReference>, SourceAssertedScoreDocTransformer, Iterable<ScoreDoc>) - Method in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SourceAssertedScoreDocTransformerExecutor
 
transform(AssociationList) - Method in class org.LexGrid.LexBIG.Impl.Extensions.tree.transform.AssociationListToTreeNodeList
 
transform(I) - Method in interface org.LexGrid.LexBIG.Impl.Extensions.tree.transform.Transformer
Transform.
transform(Entity, String, String, Entities, String, String) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
transformEntityToCodingSchemes(Entity, String, HashMap<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
transformEntityToRCR(Entity, Entity, AssertedValueSetParameters) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
transformEntityToValueSetDefinitions(Entity, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransformer
 
Transformer<I,O> - Interface in org.lexevs.tree.transform
Deprecated.
transformer - Variable in class org.LexGrid.LexBIG.Impl.Extensions.GenericExtensions.search.SearchScoreDocIterator
 
Transformer<I,O> - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.transform
The Interface Transformer.
Transformer<I,C,O> - Interface in org.LexGrid.LexBIG.Impl.helpers
 
TransformerExecutor - Interface in org.LexGrid.LexBIG.Impl.helpers
 
transformRCRtoEntity(ResolvedConceptReference, AssertedValueSetParameters) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
transformSchemeFromSpecificSource(Entity, String, String, Entities, HashMap<String, String>) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToRVSTransformer
 
transformUriToHeirarchyNode(String) - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
transformUriToHeirarchyNodeTest() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
TransformValueSetDefinitionToCodingScheme - Class in org.lexgrid.loader
 
TRANSITIVE_ASSOCIATIONS - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The TRANSITIV e_ associations.
TransitiveClosure - Class in org.LexGrid.util.sql.lgTables
This class is used to process the transitive closure of the association table
TransitiveClosure(Connection, SQLTableUtilities, String, LgMessageDirectorIF) - Constructor for class org.LexGrid.util.sql.lgTables.TransitiveClosure
 
TransitiveClosureBatchInsertItem - Class in org.lexevs.dao.database.access.association.batch
The Class TransitiveClosureBatchInsertItem.
TransitiveClosureBatchInsertItem() - Constructor for class org.lexevs.dao.database.access.association.batch.TransitiveClosureBatchInsertItem
 
TransitiveInverseAssociatinNames - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class TransitiveInverseAssociatinNames.
TransitiveInverseAssociatinNames() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveInverseAssociatinNames
 
TransitiveInverseAssociatinNamesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class TransitiveInverseAssociatinNamesDescriptor.
TransitiveInverseAssociatinNamesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveInverseAssociatinNamesDescriptor
 
TransitiveNormalAssociationNames - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences
Class TransitiveNormalAssociationNames.
TransitiveNormalAssociationNames() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.TransitiveNormalAssociationNames
 
TransitiveNormalAssociationNamesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors
Class TransitiveNormalAssociationNamesDescriptor.
TransitiveNormalAssociationNamesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.descriptors.TransitiveNormalAssociationNamesDescriptor
 
TransitivityBuilder - Interface in org.lexevs.dao.database.operation.transitivity
 
TransitivityBuilder.TransitivityTableState - Enum in org.lexevs.dao.database.operation.transitivity
 
TransitivityBuildingTasklet - Class in org.lexgrid.loader.lexbigadmin
The Class TransitivityBuildingTasklet.
TransitivityBuildingTasklet() - Constructor for class org.lexgrid.loader.lexbigadmin.TransitivityBuildingTasklet
 
TreeItem(String, String) - Constructor for class org.LexGrid.LexBIG.example.BuildTreeForCode.TreeItem
 
TreeItem(String, String, String) - Constructor for class org.LexGrid.LexBIG.example.BuildTreeForMetaCodeBySource.TreeItem
 
TreeItem(String, String) - Constructor for class org.LexGrid.LexBIG.example.FindUMLSContextsForCUI.TreeItem
 
TreeService - Interface in org.lexevs.tree.service
Deprecated.
TreeService - Interface in org.LexGrid.LexBIG.Impl.Extensions.tree.service
 
TreeServiceFactory - Class in org.lexevs.tree.service
Deprecated.
TreeServiceFactory() - Constructor for class org.lexevs.tree.service.TreeServiceFactory
Deprecated.
Instantiates a new tree service factory.
TreeServiceFactory - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.service
A factory for creating TreeService objects.
TreeServiceFactory() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.service.TreeServiceFactory
Instantiates a new tree service factory.
TreeUtility - Class in org.lexevs.tree.utility
Deprecated.
TreeUtility() - Constructor for class org.lexevs.tree.utility.TreeUtility
Deprecated.
 
TreeUtility - Class in org.LexGrid.LexBIG.Impl.Extensions.tree.utility
The Class TreeUtility.
TreeUtility() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.tree.utility.TreeUtility
 
trim(String) - Static method in class org.LexGrid.util.Utility
method removes the trailing spaces in a string and returns it.
trimLeadingWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
trimLeadingWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
trimTrailingWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
trimTrailingWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
trimWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightFieldScrubber
 
trimWhiteSpace(String) - Method in class org.LexGrid.util.file.CopyrightScrubber
 
Triple - Class in org.lexevs.dao.database.access.association.model
 
Triple() - Constructor for class org.lexevs.dao.database.access.association.model.Triple
 
Triple<T> - Class in org.lexgrid.loader.wrappers
The Class Triple.
Triple(T, T, T) - Constructor for class org.lexgrid.loader.wrappers.Triple
Instantiates a new triple.
TripleIterator(DatabaseServiceManager, String, String, String) - Constructor for class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder.TripleIterator
 
TripleIterator(DatabaseServiceManager, String, String, String, int) - Constructor for class org.lexevs.dao.database.operation.transitivity.DefaultTransitivityBuilder.TripleIterator
 
TripleUidIterator - Class in org.lexevs.paging.codednodegraph
 
TripleUidIterator(String, String, String, String, String, String, GraphQuery, CodedNodeGraphDao.TripleNode, SortOptionList, int) - Constructor for class org.lexevs.paging.codednodegraph.TripleUidIterator
 
TripleUidIteratorTest - Class in org.lexevs.paging.codednodegraph
The Class IbatisAssociationDaoTest.
TripleUidIteratorTest() - Constructor for class org.lexevs.paging.codednodegraph.TripleUidIteratorTest
 
TripleUidReferencingResolvedConceptReference - Class in org.lexevs.dao.database.ibatis.codednodegraph.model
 
TripleUidReferencingResolvedConceptReference() - Constructor for class org.lexevs.dao.database.ibatis.codednodegraph.model.TripleUidReferencingResolvedConceptReference
 
truncate(T) - Method in class org.lexgrid.loader.processor.support.BeanReflectionTruncator
 
truncate(T) - Method in interface org.lexgrid.loader.processor.support.Truncator
Truncate.
truncateDefNameforCodingSchemeName(String, boolean) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
truncateDefNameforCodingSchemeName(String, HashMap<String, String>) - Static method in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
truncateTable(String) - Method in interface org.lexevs.dao.database.utility.DatabaseUtility
Truncate table.
truncateTable(String) - Method in class org.lexevs.dao.database.utility.DefaultDatabaseUtility
 
Truncator - Interface in org.lexgrid.loader.processor.support
The Interface Truncator.
TS - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
TsAnyType - Class in org.LexGrid.builtins
An opaque inner type that can contain any well-formed, but arbitrary information.
TsAnyType() - Constructor for class org.LexGrid.builtins.TsAnyType
 
TsAnyTypeDescriptor - Class in org.LexGrid.builtins.descriptors
Class TsAnyTypeDescriptor.
TsAnyTypeDescriptor() - Constructor for class org.LexGrid.builtins.descriptors.TsAnyTypeDescriptor
 
TTY - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
TUI_PROPERTY - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
 
turnOffCaching() - Static method in class org.lexevs.cache.CacheSessionManager
 
turnOnCaching() - Static method in class org.lexevs.cache.CacheSessionManager
 
type - Variable in class org.LexGrid.LexBIG.gui.restrictions.CodeSystem
 
TYPE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
TYPEREF - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 

U

UMLS_CUI_PROPERTY - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The UML s_ cu i_ property.
UMLS_Loader - Interface in org.LexGrid.LexBIG.Extensions.Load
Load one or more coding schemes from UMLS RRF format stored in a SQL database.
UMLS_RELATIONS_ENTITY_DESCRIPTION - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The UML s_ relation s_ entit y_ description.
UMLS_RELATIONS_NAME - Static variable in class org.lexgrid.loader.rrf.constants.RrfLoaderConstants
The UML s_ relation s_ name.
UMLS_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
UMLSBaseCode - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
UMLSBaseCode() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
UMLSBaseCode.Association - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.AssociationQualification - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.AssociationSorter - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.CodeHolder - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.ConceptPresentation - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.ConceptPresentationSorter - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
 
UMLSBaseCode.SABString - Class in edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon
Deprecated.
Inner class defining a string optionally qualified by SAB and providing corresponding equality methods, etc, to support use and comparison in various collections.
UmlsBatchLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
The Interface UmlsBatchLoader.
UmlsBatchLoaderImpl - Class in org.lexgrid.loader.umls
The Class UmlsBatchLoaderImpl.
UmlsBatchLoaderImpl() - Constructor for class org.lexgrid.loader.umls.UmlsBatchLoaderImpl
 
UmlsBatchLoaderLauncher - Class in org.lexgrid.loader.umls.launch
The Class UmlsBatchLoaderLauncher.
UmlsBatchLoaderLauncher() - Constructor for class org.lexgrid.loader.umls.launch.UmlsBatchLoaderLauncher
 
UmlsBatchLoaderSabVerifier - Class in org.lexgrid.loader.umls
Verify the file and SAB are valid.
UmlsBatchLoaderSabVerifier(Properties) - Constructor for class org.lexgrid.loader.umls.UmlsBatchLoaderSabVerifier
 
UmlsBatchLoaderTest - Class in org.lexgrid.loader.umls
The Class UmlsBatchLoaderTest.
UmlsBatchLoaderTest() - Constructor for class org.lexgrid.loader.umls.UmlsBatchLoaderTest
 
UmlsCodingSchemeIdSetter - Class in org.lexgrid.loader.umls.data.codingscheme
The Class UmlsCodingSchemeIdSetter.
UmlsCodingSchemeIdSetter() - Constructor for class org.lexgrid.loader.umls.data.codingscheme.UmlsCodingSchemeIdSetter
 
UmlsCodingSchemeProcessor - Class in org.lexgrid.loader.umls.processor
The Class UmlsCodingSchemeProcessor.
UmlsCodingSchemeProcessor() - Constructor for class org.lexgrid.loader.umls.processor.UmlsCodingSchemeProcessor
 
umlsConnection2_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
umlsConnection_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
UmlsConstants - Class in org.lexgrid.loader.umls.constants
The Class UmlsConstants.
UmlsConstants() - Constructor for class org.lexgrid.loader.umls.constants.UmlsConstants
 
UMLSCUI_FILE_OPTION - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
UmlsCuiPropertyResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsCuiPropertyResolver.
UmlsCuiPropertyResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsCuiPropertyResolver
 
UMLSHistoryFile - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading a LexGrid Delimited Text File.
UMLSHistoryFile(URI, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
UMLSHistoryFile() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSHistoryFile
 
UMLSHistoryFileToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
 
UMLSHistoryFileToSQL(String, boolean, LgMessageDirectorIF, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSHistoryFileToSQL
NCI Thesaurus History File to SQL Converter.
UMLSHistoryLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
 
UMLSHistoryLoader - Class in org.LexGrid.LexBIG.gui.load
 
UMLSHistoryLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.UMLSHistoryLoader
 
UMLSHistoryLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
UMLSHistoryLoaderImpl() - Constructor for class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
UMLSHistoryServiceImpl - Class in org.LexGrid.LexBIG.Impl.History
The implementation of the history service against the custom UMLS history file / table.
UMLSHistoryServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
This constructor is only here for Apache Axis to work correctly.
UMLSHistoryServiceImpl(String) - Constructor for class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceImpl
 
UMLSHistoryServiceTest - Class in org.LexGrid.LexBIG.Impl.History
 
UMLSHistoryServiceTest() - Constructor for class org.LexGrid.LexBIG.Impl.History.UMLSHistoryServiceTest
 
UMLSHistorySQLQueries - Class in org.LexGrid.LexBIG.Impl.History
 
UMLSHistorySQLQueries() - Constructor for class org.LexGrid.LexBIG.Impl.History.UMLSHistorySQLQueries
 
UmlsIntrospectiveHardcodedValues - Class in org.lexgrid.loader.umls.hardcodedvalues
The Class UmlsIntrospectiveHardcodedValues.
UmlsIntrospectiveHardcodedValues() - Constructor for class org.lexgrid.loader.umls.hardcodedvalues.UmlsIntrospectiveHardcodedValues
 
UMLSLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences
Placeholder.
UMLSLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.UMLSLoaderPreferences
 
UMLSLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors
Class UMLSLoaderPreferencesDescriptor.
UMLSLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.descriptors.UMLSLoaderPreferencesDescriptor
 
UmlsMrconsoEntityCodeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrconsoEntityCodeResolver.
UmlsMrconsoEntityCodeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityCodeResolver
 
UmlsMrconsoEntityGroupDiscriminator - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrconsoEntityGroupDiscriminator.
UmlsMrconsoEntityGroupDiscriminator() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityGroupDiscriminator
 
UmlsMrconsoEntityResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrconsoEntityResolver.
UmlsMrconsoEntityResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrconsoEntityResolver
 
UmlsMrconsoGroupDiscriminator - Class in org.lexgrid.loader.umls.reader.support
The Class UmlsMrconsoGroupDiscriminator.
UmlsMrconsoGroupDiscriminator() - Constructor for class org.lexgrid.loader.umls.reader.support.UmlsMrconsoGroupDiscriminator
 
UmlsMrdefEntityCodeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrdefEntityCodeResolver.
UmlsMrdefEntityCodeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrdefEntityCodeResolver
 
UmlsMrhierHcdSabSkipPolicy - Class in org.lexgrid.loader.umls.reader.support
The Class UmlsMrhierHcdSabSkipPolicy.
UmlsMrhierHcdSabSkipPolicy() - Constructor for class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicy
 
UmlsMrhierHcdSabSkipPolicyTest - Class in org.lexgrid.loader.umls.reader.support
The Class UmlsMrhierHcdSabSkipPolicyTest.
UmlsMrhierHcdSabSkipPolicyTest() - Constructor for class org.lexgrid.loader.umls.reader.support.UmlsMrhierHcdSabSkipPolicyTest
 
UmlsMrrelEntityCodeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrrelEntityCodeResolver.
UmlsMrrelEntityCodeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrrelEntityCodeResolver
 
UmlsMrrelGroupDiscriminator - Class in org.lexgrid.loader.umls.reader.support
The Class UmlsMrrelGroupDiscriminator.
UmlsMrrelGroupDiscriminator() - Constructor for class org.lexgrid.loader.umls.reader.support.UmlsMrrelGroupDiscriminator
 
UmlsMrsatEntityCodeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsMrsatEntityCodeResolver.
UmlsMrsatEntityCodeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsMrsatEntityCodeResolver
 
UMLSPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load UMLS loader preferences from an XML file
UMLSPreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.UMLSPreferenceLoader
Constructor for creating an UMLSPreferenceLoader.
UMLSPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.UMLSPreferenceLoader
Constructor for creating an UMLSPreferenceLoader.
UmlsPropertyResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsPropertyResolver.
UmlsPropertyResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsPropertyResolver
 
UmlsRelationContainerResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsRelationContainerResolver.
UmlsRelationContainerResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsRelationContainerResolver
 
UmlsRelationResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsRelationResolver.
UmlsRelationResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsRelationResolver
 
UmlsRootNodeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsRootNodeResolver.
UmlsRootNodeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsRootNodeResolver
 
UMLSRRFLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading UMLS RRF files into LexBIG.
UMLSRRFLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.UMLSRRFLoader
 
UMLSSemNetLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading UMLS RRF files into LexBIG.
UMLSSemNetLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.UMLSSemNetLoader
 
umlsServers - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
UmlsSourceEntityCodeAndCodingSchemeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsSourceEntityCodeAndCodingSchemeResolver.
UmlsSourceEntityCodeAndCodingSchemeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsSourceEntityCodeAndCodingSchemeResolver
 
UMLSSQL - Class in edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Details for reading from a UMLS server.
UMLSSQL(String, String, String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
UMLSSQL() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.inputFormats.UMLSSQL
 
UMLSSQLLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading UMLS RRF files into LexBIG.
UMLSSQLLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.UMLSSQLLoader
 
umlsSqlModifier_ - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
UmlsTargetEntityCodeAndCodingSchemeResolver - Class in org.lexgrid.loader.umls.processor.support
The Class UmlsTargetEntityCodeAndCodingSchemeResolver.
UmlsTargetEntityCodeAndCodingSchemeResolver() - Constructor for class org.lexgrid.loader.umls.processor.support.UmlsTargetEntityCodeAndCodingSchemeResolver
 
UMLSToSQL - Class in edu.mayo.informatics.lexgrid.convert.directConversions
A tool to load the LexGrid SQL table from UMLS.
UMLSToSQL(String, String, String, String, String, String, String, String, String, String, LoaderPreferences, URI, boolean, LgMessageDirectorIF) - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSToSQL
Class to convert from UMLS to SQL.
UNASSIGNED_LABEL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabulary2LGConstants
 
UNASSIGNED_LABEL - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRA2LGConstants
 
UNASSIGNED_LABEL - Static variable in class edu.mayo.informatics.resourcereader.obo.OBOConstants
 
unbind(Name) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
unbind(String) - Method in class org.LexGrid.util.ldap.AutoReconnectDirContext
 
unEscapeQuotedComma(String) - Static method in class edu.mayo.informatics.resourcereader.core.StringUtils
 
UnexpectedError - Exception in edu.mayo.informatics.lexgrid.convert.exceptions
Error to be thrown when something unexpected happens.
UnexpectedError(String, Exception) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.UnexpectedError
 
UnexpectedError(String) - Constructor for exception edu.mayo.informatics.lexgrid.convert.exceptions.UnexpectedError
 
UnexpectedInternalError - Exception in org.lexevs.exceptions
An exception to throw when something unplanned goes wrong.
UnexpectedInternalError(String) - Constructor for exception org.lexevs.exceptions.UnexpectedInternalError
Instantiates a new unexpected internal error.
UnexpectedInternalError(String, Throwable) - Constructor for exception org.lexevs.exceptions.UnexpectedInternalError
Instantiates a new unexpected internal error.
UNIDENTIFIABLE - Static variable in class org.LexGrid.LexBIG.Extensions.Generic.TerminologyServiceDesignation
 
UNION - Static variable in class org.LexGrid.LexBIG.gui.codeSet.CodeSet
 
union(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeGraphImpl
 
Union - Class in org.LexGrid.LexBIG.Impl.codedNodeGraphOperations
Holder for a Union operation on the graph
Union(CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.Impl.codedNodeGraphOperations.Union
 
union(CodedNodeSet) - Method in class org.LexGrid.LexBIG.Impl.CodedNodeSetImpl
 
union(CodeHolder) - Method in interface org.LexGrid.LexBIG.Impl.helpers.CodeHolder
Union.
union(CodeHolder) - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
union(GHolder) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
Performs a boolean union of this graph holder with another.
union(CodedNodeGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.AbstractCodedNodeGraph
 
union(KeyedGraph) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
union(CodedNodeGraph) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeGraph
Return the union of the two graphs.
union(CodedNodeSet) - Method in interface org.LexGrid.LexBIG.LexBIGService.CodedNodeSet
Return the set union of all of the codes in the containing or the referenced set
unionAssociation(Association, Association) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
unionAssociationList(AssociationList, AssociationList) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
UnionGraph - Class in org.LexGrid.LexBIG.Impl.pagedgraph
The Class UnionGraph.
UnionGraph() - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
UnionGraph(CodedNodeGraph, CodedNodeGraph) - Constructor for class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
Instantiates a new union graph.
unionReference(ResolvedConceptReference, ResolvedConceptReference) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
unionReference(AssociatedConcept, AssociatedConcept) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
unionReferenceList(boolean, ResolvedConceptReferenceList, ResolvedConceptReferenceList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.UnionGraph
 
unionReferenceList(ResolvedConceptReferenceList, ResolvedConceptReferenceList) - Static method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.MultiGraphUtility
 
UNIQUE_DOCUMENT_IDENTIFIER_FIELD - Static variable in class org.lexevs.dao.indexer.lucene.Index
 
UNIQUE_ID - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The entity code.
UniqueCuiListFilter - Class in org.lexgrid.loader.umls.processor.support.filter
The Class UniqueCuiListFilter.
UniqueCuiListFilter() - Constructor for class org.lexgrid.loader.umls.processor.support.filter.UniqueCuiListFilter
 
UniqueCuiListFilterTest - Class in org.lexgrid.loader.umls.processor.support.filter
The Class UniqueCuiListFilterTest.
UniqueCuiListFilterTest() - Constructor for class org.lexgrid.loader.umls.processor.support.filter.UniqueCuiListFilterTest
 
UNKNOWN - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
UNKNOWN_ERROR_CODE - Static variable in interface org.lexevs.dao.database.service.error.DatabaseError
The UNKNOW_ERROR_CODE Constant.
UNKNOWN_NUMBER - Static variable in class org.LexGrid.LexBIG.Impl.helpers.IteratorBackedResolvedConceptReferencesIterator
 
unlock(URNVersionPair) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
unmarshal(Class<?>) - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
 
unmarshalAssociatableElement(Reader) - Static method in class org.LexGrid.relations.AssociatableElement
Method unmarshalAssociatableElement.
unmarshalAssociationData(Reader) - Static method in class org.LexGrid.relations.AssociationData
Method unmarshalAssociationData.
unmarshalAssociationEntity(Reader) - Static method in class org.LexGrid.relations.AssociationEntity
Method unmarshalAssociationEntity.
unmarshalAssociationPredicate(Reader) - Static method in class org.LexGrid.relations.AssociationPredicate
Method unmarshalAssociationPredicate.
unmarshalAssociationQualification(Reader) - Static method in class org.LexGrid.relations.AssociationQualification
Method unmarshalAssociationQualification.
unmarshalAssociationSource(Reader) - Static method in class org.LexGrid.relations.AssociationSource
Method unmarshalAssociationSource.
unmarshalAssociationTarget(Reader) - Static method in class org.LexGrid.relations.AssociationTarget
Method unmarshalAssociationTarget.
unmarshalChangedEntry(Reader) - Static method in class org.LexGrid.versions.ChangedEntry
Method unmarshalChangedEntry.
unmarshalCodingScheme(Reader) - Static method in class org.LexGrid.codingSchemes.CodingScheme
Method unmarshalCodingScheme.
unmarshalCodingSchemeManifest(Reader) - Static method in class org.LexGrid.LexOnt.CodingSchemeManifest
Method unmarshalCodingSchemeManifest.
unmarshalCodingSchemeManifestList(Reader) - Static method in class org.LexGrid.LexOnt.CodingSchemeManifestList
Method unmarshalCodingSchemeManifestList.
unmarshalCodingSchemeReference(Reader) - Static method in class org.LexGrid.valueSets.CodingSchemeReference
Method unmarshalCodingSchemeReference.
unmarshalCodingSchemes(Reader) - Static method in class org.LexGrid.codingSchemes.CodingSchemes
Method unmarshalCodingSchemes.
unmarshalCodingSchemeVersion(Reader) - Static method in class org.LexGrid.versions.CodingSchemeVersion
Method unmarshalCodingSchemeVersion.
unmarshalComment(Reader) - Static method in class org.LexGrid.concepts.Comment
Method unmarshalComment.
unmarshalCsmfAssociationDefinition(Reader) - Static method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
Method unmarshalCsmfAssociationDefinition.
unmarshalCsmfCodingSchemeName(Reader) - Static method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
Method unmarshalCsmfCodingSchemeName.
unmarshalCsmfCodingSchemeURI(Reader) - Static method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
Method unmarshalCsmfCodingSchemeURI.
unmarshalCsmfDefaultLanguage(Reader) - Static method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
Method unmarshalCsmfDefaultLanguage.
unmarshalCsmfEntityDescription(Reader) - Static method in class org.LexGrid.LexOnt.CsmfEntityDescription
Method unmarshalCsmfEntityDescription.
unmarshalCsmfFormalName(Reader) - Static method in class org.LexGrid.LexOnt.CsmfFormalName
Method unmarshalCsmfFormalName.
unmarshalCsmfLocalName(Reader) - Static method in class org.LexGrid.LexOnt.CsmfLocalName
Method unmarshalCsmfLocalName.
unmarshalCsmfMappings(Reader) - Static method in class org.LexGrid.LexOnt.CsmfMappings
Method unmarshalCsmfMappings.
unmarshalCsmfSource(Reader) - Static method in class org.LexGrid.LexOnt.CsmfSource
Method unmarshalCsmfSource.
unmarshalCsmfText(Reader) - Static method in class org.LexGrid.LexOnt.CsmfText
Method unmarshalCsmfText.
unmarshalCsmfVersion(Reader) - Static method in class org.LexGrid.LexOnt.CsmfVersion
Method unmarshalCsmfVersion.
unmarshalDefinition(Reader) - Static method in class org.LexGrid.concepts.Definition
Method unmarshalDefinition.
unmarshalDefinitionEntry(Reader) - Static method in class org.LexGrid.valueSets.DefinitionEntry
Method unmarshalDefinitionEntry.
unmarshalDescribable(Reader) - Static method in class org.LexGrid.commonTypes.Describable
Method unmarshalDescribable.
unmarshalEditHistory(Reader) - Static method in class org.LexGrid.versions.EditHistory
Method unmarshalEditHistory.
unmarshalEntities(Reader) - Static method in class org.LexGrid.concepts.Entities
Method unmarshalEntities.
unmarshalEntity(Reader) - Static method in class org.LexGrid.concepts.Entity
Method unmarshalEntity.
unmarshalEntityDescription(Reader) - Static method in class org.LexGrid.commonTypes.EntityDescription
Method unmarshalEntityDescription.
unmarshalEntityReference(Reader) - Static method in class org.LexGrid.valueSets.EntityReference
Method unmarshalEntityReference.
unmarshalEntityVersion(Reader) - Static method in class org.LexGrid.versions.EntityVersion
Method unmarshalEntityVersion.
unmarshalEntryState(Reader) - Static method in class org.LexGrid.versions.EntryState
Method unmarshalEntryState.
unmarshalled(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgCodingSchemeListener
 
unmarshalled(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgPickListListener
 
unmarshalled(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgRevisionListener
 
unmarshalled(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgSystemReleaseListener
 
unmarshalled(Object, Object) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.LgValueSetListener
 
UnMarshallingLogic - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
This class contains a number of methods to determine places in a LexGrid xml file where the parser should stop and some kind of load processing should take place.
UnMarshallingLogic() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.UnMarshallingLogic
 
unmarshalMappings(Reader) - Static method in class org.LexGrid.naming.Mappings
Method unmarshalMappings.
unmarshalPickListDefinition(Reader) - Static method in class org.LexGrid.valueSets.PickListDefinition
Method unmarshalPickListDefinition.
unmarshalPickListDefinitions(Reader) - Static method in class org.LexGrid.valueSets.PickListDefinitions
Method unmarshalPickListDefinitions.
unmarshalPickListEntry(Reader) - Static method in class org.LexGrid.valueSets.PickListEntry
Method unmarshalPickListEntry.
unmarshalPickListEntryExclusion(Reader) - Static method in class org.LexGrid.valueSets.PickListEntryExclusion
Method unmarshalPickListEntryExclusion.
unmarshalPickListEntryNode(Reader) - Static method in class org.LexGrid.valueSets.PickListEntryNode
Method unmarshalPickListEntryNode.
unmarshalPickListEntryNodeChoice(Reader) - Static method in class org.LexGrid.valueSets.PickListEntryNodeChoice
Method unmarshalPickListEntryNodeChoice.
unmarshalPresentation(Reader) - Static method in class org.LexGrid.concepts.Presentation
Method unmarshalPresentation.
unmarshalProperties(Reader) - Static method in class org.LexGrid.commonTypes.Properties
Method unmarshalProperties.
unmarshalProperty(Reader) - Static method in class org.LexGrid.commonTypes.Property
Method unmarshalProperty.
unmarshalPropertyLink(Reader) - Static method in class org.LexGrid.concepts.PropertyLink
Method unmarshalPropertyLink.
unmarshalPropertyMatchValue(Reader) - Static method in class org.LexGrid.valueSets.PropertyMatchValue
Method unmarshalPropertyMatchValue.
unmarshalPropertyQualifier(Reader) - Static method in class org.LexGrid.commonTypes.PropertyQualifier
Method unmarshalPropertyQualifier.
unmarshalPropertyReference(Reader) - Static method in class org.LexGrid.valueSets.PropertyReference
Method unmarshalPropertyReference.
unmarshalRelations(Reader) - Static method in class org.LexGrid.relations.Relations
Method unmarshalRelations.
unmarshalRevision(Reader) - Static method in class org.LexGrid.versions.Revision
Method unmarshalRevision.
unmarshalSource(Reader) - Static method in class org.LexGrid.commonTypes.Source
Method unmarshalSource.
unmarshalSupportedAssociation(Reader) - Static method in class org.LexGrid.naming.SupportedAssociation
Method unmarshalSupportedAssociation.
unmarshalSupportedAssociationQualifier(Reader) - Static method in class org.LexGrid.naming.SupportedAssociationQualifier
Method unmarshalSupportedAssociationQualifier.
unmarshalSupportedCodingScheme(Reader) - Static method in class org.LexGrid.naming.SupportedCodingScheme
Method unmarshalSupportedCodingScheme.
unmarshalSupportedConceptDomain(Reader) - Static method in class org.LexGrid.naming.SupportedConceptDomain
Method unmarshalSupportedConceptDomain.
unmarshalSupportedContainerName(Reader) - Static method in class org.LexGrid.naming.SupportedContainerName
Method unmarshalSupportedContainerName.
unmarshalSupportedContext(Reader) - Static method in class org.LexGrid.naming.SupportedContext
Method unmarshalSupportedContext.
unmarshalSupportedDataType(Reader) - Static method in class org.LexGrid.naming.SupportedDataType
Method unmarshalSupportedDataType.
unmarshalSupportedDegreeOfFidelity(Reader) - Static method in class org.LexGrid.naming.SupportedDegreeOfFidelity
Method unmarshalSupportedDegreeOfFidelity.
unmarshalSupportedEntityType(Reader) - Static method in class org.LexGrid.naming.SupportedEntityType
Method unmarshalSupportedEntityType.
unmarshalSupportedHierarchy(Reader) - Static method in class org.LexGrid.naming.SupportedHierarchy
Method unmarshalSupportedHierarchy.
unmarshalSupportedLanguage(Reader) - Static method in class org.LexGrid.naming.SupportedLanguage
Method unmarshalSupportedLanguage.
unmarshalSupportedNamespace(Reader) - Static method in class org.LexGrid.naming.SupportedNamespace
Method unmarshalSupportedNamespace.
unmarshalSupportedProperty(Reader) - Static method in class org.LexGrid.naming.SupportedProperty
Method unmarshalSupportedProperty.
unmarshalSupportedPropertyLink(Reader) - Static method in class org.LexGrid.naming.SupportedPropertyLink
Method unmarshalSupportedPropertyLink.
unmarshalSupportedPropertyQualifier(Reader) - Static method in class org.LexGrid.naming.SupportedPropertyQualifier
Method unmarshalSupportedPropertyQualifier.
unmarshalSupportedPropertyQualifierType(Reader) - Static method in class org.LexGrid.naming.SupportedPropertyQualifierType
Method unmarshalSupportedPropertyQualifierType.
unmarshalSupportedPropertyType(Reader) - Static method in class org.LexGrid.naming.SupportedPropertyType
Method unmarshalSupportedPropertyType.
unmarshalSupportedRepresentationalForm(Reader) - Static method in class org.LexGrid.naming.SupportedRepresentationalForm
Method unmarshalSupportedRepresentationalForm.
unmarshalSupportedSortOrder(Reader) - Static method in class org.LexGrid.naming.SupportedSortOrder
Method unmarshalSupportedSortOrder.
unmarshalSupportedSource(Reader) - Static method in class org.LexGrid.naming.SupportedSource
Method unmarshalSupportedSource.
unmarshalSupportedSourceRole(Reader) - Static method in class org.LexGrid.naming.SupportedSourceRole
Method unmarshalSupportedSourceRole.
unmarshalSupportedStatus(Reader) - Static method in class org.LexGrid.naming.SupportedStatus
Method unmarshalSupportedStatus.
unmarshalSystemRelease(Reader) - Static method in class org.LexGrid.versions.SystemRelease
Method unmarshalSystemRelease.
unmarshalText(Reader) - Static method in class org.LexGrid.commonTypes.Text
Method unmarshalText.
unmarshalTsAnyType(Reader) - Static method in class org.LexGrid.builtins.TsAnyType
Method unmarshalTsAnyType.
unmarshalURIMap(Reader) - Static method in class org.LexGrid.naming.URIMap
Method unmarshalURIMap.
unmarshalValueSetDefinition(Reader) - Static method in class org.LexGrid.valueSets.ValueSetDefinition
Method unmarshalValueSetDefinition.
unmarshalValueSetDefinitionReference(Reader) - Static method in class org.LexGrid.valueSets.ValueSetDefinitionReference
Method unmarshalValueSetDefinitionReference.
unmarshalValueSetDefinitions(Reader) - Static method in class org.LexGrid.valueSets.ValueSetDefinitions
Method unmarshalValueSetDefinitions.
unmarshalVersionable(Reader) - Static method in class org.LexGrid.commonTypes.Versionable
Method unmarshalVersionable.
unmarshalVersionableAndDescribable(Reader) - Static method in class org.LexGrid.commonTypes.VersionableAndDescribable
Method unmarshalVersionableAndDescribable.
unRegisterCodingSchemeAsSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.LexGrid.LexBIG.Impl.LexBIGServiceManagerImpl
 
unRegisterCodingSchemeAsSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in interface org.LexGrid.LexBIG.LexBIGService.LexBIGServiceManager
Unregister a coding scheme as a supplement to a specified coding scheme.
unRegisterCodingSchemeIndex(String, String) - Method in interface org.lexevs.dao.index.indexregistry.IndexRegistry
 
unRegisterCodingSchemeIndex(String, String) - Method in class org.lexevs.dao.index.indexregistry.MultiIndexRegistry
 
unRegisterCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
unRegisterCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
unRegisterCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
unRegisterCodingSchemeSupplement(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in interface org.lexevs.system.service.SystemResourceService
 
unregisterExportExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterExportExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterFilterExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterFilterExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterGenericExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterGenericExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterIndexExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterIndexExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterListener(String) - Method in class org.lexevs.dao.database.service.event.registry.BaseListenerRegistry
 
unregisterListener(String) - Method in interface org.lexevs.dao.database.service.event.registry.ListenerRegistry
Unregister listener.
unregisterLoadExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterLoadExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterSearchExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
 
unregisterSearchExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
unregisterSortExtension(String) - Method in interface org.LexGrid.LexBIG.Extensions.ExtensionRegistry
Removes registration for the given named extension.
unregisterSortExtension(String) - Method in class org.LexGrid.LexBIG.Impl.Extensions.ExtensionRegistryImpl
 
UNRESOLVED_DETAILS - Static variable in class edu.mayo.informatics.lexgrid.convert.validator.resolution.AbstractResolver
The UNRESOLVE d_ details.
UNTOKENIZED_LOWERCASE_PROPERTY_VALUE_FIELD - Static variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The UNTOKENIZE d_ lowercas e_ propert y_ valu e_ field.
unwrap(Class<T>) - Method in class org.lexevs.dao.database.datasource.ErrorReportingDataSourceDecorator
 
unwrap(Class<T>) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
unwrap(Class<T>) - Method in class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
update() - Method in interface org.lexevs.dao.database.service.RevisableAbstractDatabaseService.UpdateTemplate
Update.
UPDATE_ASSOCIATIONDATA_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationDataService
The Constant UPDATE_ASSOCIATIONDATA_ERROR.
UPDATE_ASSOCIATIONTARGET_ERROR - Static variable in interface org.lexevs.dao.database.service.association.AssociationTargetService
The Constant UPDATE_ASSOCIATIONTARGET_ERROR.
UPDATE_CODINGSCHEME_ENTRYSTATE_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant UPDATE_CODINGSCHEME_ENTRYSTATE_ERROR.
UPDATE_CODINGSCHEME_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant UPDATE_CODINGSCHEME_ERROR.
UPDATE_CODINGSCHEME_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant UPDATE_CODINGSCHEME_PROPERTY_ERROR.
UPDATE_CODINGSCHEME_URI_ERROR - Static variable in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
The Constant UPDATE_CODINGSCHEME_URI_ERROR.
UPDATE_ENTITY_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
UPDATE_ENTITY_ERROR - Static variable in interface org.lexevs.dao.database.service.entity.EntityService
The Constant UPDATE_ENTITY_ERROR.
UPDATE_ENTITY_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant UPDATE_ENTITY_PROPERTY_ERROR.
UPDATE_MULTI_ATTRIB_ENTRYSTATE_UID_BY_PROP_ID_TYPE_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
UPDATE_PROPERTY_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
UPDATE_PROPERTY_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
UPDATE_PROPERTY_VER_ATTRIB_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
UPDATE_PROPERTY_VERSIONABLE_ATTRIB_BY_UID_SQL - Static variable in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
UPDATE_RELATION_ERROR - Static variable in interface org.lexevs.dao.database.service.relation.RelationService
The Constant UPDATE_RELATION_ERROR.
UPDATE_RELATION_PROPERTY_ERROR - Static variable in interface org.lexevs.dao.database.service.property.PropertyService
The Constant UPDATE_RELATION_PROPERTY_ERROR.
UPDATE_URIMAPS_BY_LOCALID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
UPDATE_URIMAPS_BY_LOCALID_SQL - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
updateApproximateConceptNumber() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
updateApproximateConceptNumber() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
updateApproxNumberOfConcepts(int, String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
Deprecated.
 
updateAssociationData(String, String, AssociationData) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
updateAssociationData(String, String, AssociationData) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
updateAssociationData(String, String, AssociationData) - Method in interface org.lexevs.dao.database.service.association.AssociationDataService
Update association data.
updateAssociationData(String, String, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
updateAssociationEntity(String, String, AssociationEntity) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
updateAssociationTarget(String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
updateAssociationTarget(String, String, AssociationTarget) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
updateAssociationTarget(String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.service.association.AssociationTargetService
Update association target.
updateAssociationTarget(String, String, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
updateBean(Object, Object) - Static method in class org.lexevs.dao.database.utility.DaoUtility
 
updateCodingScheme(String, CodingScheme) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Update coding scheme.
updateCodingScheme(String, CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
updateCodingScheme(String, String, CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
Update coding scheme.
updateCodingScheme(CodingScheme) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Update coding scheme.
updateCodingScheme(CodingScheme) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
updateCodingScheme(String, CodingScheme) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
updateCodingSchemeEntryTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
Update coding scheme entry tag.
updateCodingSchemeEntryTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.registry.service.XmlRegistry
Update coding scheme entry tag.
updateCodingSchemeEntryTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Update coding scheme entry tag.
updateCodingSchemeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
update coding schme property.
updateCodingSchemeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
updateCodingSchemeResourceStatus(AbsoluteCodingSchemeVersionReference, CodingSchemeVersionStatus) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
updateCodingSchemeResourceStatus(AbsoluteCodingSchemeVersionReference, CodingSchemeVersionStatus) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
updateCodingSchemeResourceStatus(AbsoluteCodingSchemeVersionReference, CodingSchemeVersionStatus) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
updateCodingSchemeResourceStatus(AbsoluteCodingSchemeVersionReference, CodingSchemeVersionStatus) - Method in interface org.lexevs.system.service.SystemResourceService
Update coding scheme resource status.
updateCodingSchemeResourceTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
updateCodingSchemeResourceTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
updateCodingSchemeResourceTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
updateCodingSchemeResourceTag(AbsoluteCodingSchemeVersionReference, String) - Method in interface org.lexevs.system.service.SystemResourceService
Update coding scheme resource tag.
updateCodingSchemeVersionableAttrib(String, CodingScheme) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Update coding scheme versionable attributes.
updateCodingSchemeVersionableAttrib(String, CodingScheme) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
updateCodingSchemeVersionableAttrib(String, CodingScheme) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
updateCodingSchemeWithMappingsInsert() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
 
updateCodingSchemeWithMappingsUpdate() - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
 
updateDefinitionEntry(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
updateDefinitionEntry(String, DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
updateDefinitionEntry(DefinitionEntry, DefinitionEntry) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
updateDefinitionEntryVersionableAttrib(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.access.valuesets.VSDefinitionEntryDao
 
updateDefinitionEntryVersionableAttrib(String, DefinitionEntry) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSDefinitionEntryDao
 
updateEntity(String, String, Entity) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
Update entity.
updateEntity(String, AssociationEntity) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
updateEntity(String, String, Entity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
updateEntity(String, AssociationEntity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
updateEntity(String, String, Entity) - Method in interface org.lexevs.dao.database.service.entity.EntityService
Update entity.
updateEntity() - Method in class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
updateEntity(String, String, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
updateEntity(String, String, AssociationEntity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
Update entity.
updateEntity(String, String, Entity) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
updateEntity(String, AssociationEntity) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
updateEntityProperty(String, String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Update entity property.
updateEntityProperty(String, String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
updateEntityVersionableAttrib(String, String, Entity) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
updateEntityVersionableAttrib(String, String, Entity) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
updateEntityVersionableAttrib(String, String, Entity) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
updateEntry(I, T, VersionsDao.EntryStateType, RevisableAbstractDatabaseService.UpdateTemplate) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Update entry.
updateEntry(RegistryEntry) - Method in class org.lexevs.registry.service.DatabaseRegistry
 
updateEntry(RegistryEntry) - Method in class org.lexevs.registry.service.DelegatingDatabaseToXmlRegistry
 
updateEntry(RegistryEntry) - Method in interface org.lexevs.registry.service.Registry
Update entry.
updateEntry(RegistryEntry) - Method in class org.lexevs.registry.service.XmlRegistry
 
updateEntryState(String, EntryState) - Method in interface org.lexevs.dao.database.access.valuesets.VSEntryStateDao
Update entry state.
updateEntryState(String, EntryState) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
 
updateEntryState(String, EntryState) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
updateEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Method finds if the given codingScheme already exists.
updateEntryStateUId(String, String, String) - Method in interface org.lexevs.dao.database.access.entity.EntityDao
 
updateEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
updateEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
updateEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
updateEntryStateUId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.entity.IbatisEntityDao
 
updateEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
updateEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
updateEntryStateUId(String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
updateEntryStateUId(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.entity.SQLInterfaceEntityDao
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, AssociationData) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, AssociationTarget) - Method in class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, CodingScheme) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, Entity) - Method in class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.ParentUidReferencingId, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
updateEntryVersionableAttributes(RevisableAbstractDatabaseService.CodingSchemeUriVersionBasedEntryId, String, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
updateEntryVersionableAttributes(I, String, T) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Update entity versionable attributes.
updateIndexForEntity(String, String, Entity) - Method in interface org.lexevs.dao.index.service.entity.EntityIndexService
Update index for entity.
updateIndexForEntity(String, String, Entity) - Method in class org.lexevs.dao.index.service.entity.LuceneEntityIndexService
 
updateIndexForEntity(String, String, Entity) - Method in class org.lexevs.dao.index.service.entity.SearchIndexAwareEntityIndexService
 
updateIndexForEntity(String, String, String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.AssertedValueSetSearchIndexService
Updates an indexed entity by first deleting the old entity, then adding the new entity
updateIndexForEntity(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.LuceneSearchIndexService
 
updateIndexForEntity(String, String, Entity) - Method in interface org.lexevs.dao.index.service.search.SearchIndexService
 
updateIndexForEntity(String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
updateIndexForEntity(String, String, String, String, Entity) - Method in class org.lexevs.dao.index.service.search.SourceAssertedValueSetSearchIndexService
 
updateIndexForEntity(String, String, Entity) - Method in class org.lexgrid.resolvedvalueset.impl.ExternalResolvedValueSetIndexService
 
updateIndexForEntityTest() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.SourceAssertedValueSetSearchIndexServiceTest
 
updateLastUpdateTime(Date) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Update last update time.
updateLastUpdateTime(Date) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
updateLastUsedDbIdentifier(String) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Update last used db identifier.
updateLastUsedDbIdentifier(String) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
updateNonCodingSchemeResourceStatus(String, CodingSchemeVersionStatus) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
updateNonCodingSchemeResourceStatus(String, CodingSchemeVersionStatus) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
updateNonCodingSchemeResourceStatus(String, CodingSchemeVersionStatus) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
updateNonCodingSchemeResourceStatus(String, CodingSchemeVersionStatus) - Method in interface org.lexevs.system.service.SystemResourceService
Update non coding scheme resource status.
updateNonCodingSchemeResourceTag(String, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
 
updateNonCodingSchemeResourceTag(String, String) - Method in class org.lexevs.system.service.DelegatingSystemResourceService
 
updateNonCodingSchemeResourceTag(String, String) - Method in class org.lexevs.system.service.LexEvsResourceManagingService
 
updateNonCodingSchemeResourceTag(String, String) - Method in interface org.lexevs.system.service.SystemResourceService
Update non coding scheme resource tag.
updateOrientation(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.GraphView
 
updateOrientation(int) - Method in class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
updatePickListDefinition(String, PickListDefinition) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
updatePickListDefinition(String, PickListDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
updatePickListDefinition(PickListDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Update pick list definition.
updatePickListDefinition(PickListDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
updatePickListDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
updatePickListDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Update pick list definition property.
updatePickListEntryNode(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
updatePickListEntryNode(String, PickListEntryNode) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
updatePickListEntryNode(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Update pick list entry node.
updatePickListEntryNode(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
updatePickListEntryNodeProperty(String, String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
updatePickListEntryNodeProperty(String, String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Update pick list entry node property.
updatePresentation() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
updatePreviousEntryStateUIds(String, String, String, String) - Method in interface org.lexevs.dao.database.access.versions.VersionsDao
 
updatePreviousEntryStateUIds(String, String, String, String) - Method in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
updateProperty(String, String, String, PropertyDao.PropertyType, Property) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
Update property.
updateProperty(String, String, VSPropertyDao.ReferenceType, Property) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
Update property.
updateProperty(String, String, String, PropertyDao.PropertyType, Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
updateProperty() - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDaoTest
 
updateProperty(String, String, VSPropertyDao.ReferenceType, Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
updateProperty() - Method in class org.lexevs.dao.database.service.property.VersionablePropertyServiceTest
Insert entity.
updatePropertyQualifier(PropertyQualifier, PropertyQualifier) - Method in class org.LexGrid.LexBIG.gui.valueSetsView.PropertyView
 
updatePropertyRollbackInListener() - Method in class org.lexevs.dao.database.service.property.VersionablePropertyServiceTest
 
updatePropertyVersionableAttrib(String, String, Property) - Method in interface org.lexevs.dao.database.access.property.PropertyDao
 
updatePropertyVersionableAttrib(String, String, Property) - Method in class org.lexevs.dao.database.ibatis.property.IbatisPropertyDao
 
updateRegistryEntry(RegistryEntry) - Method in interface org.lexevs.dao.database.access.registry.RegistryDao
Update registry entry.
updateRegistryEntry(RegistryEntry) - Method in class org.lexevs.dao.database.hibernate.registry.HibernateRegistryDao
 
updateRegistryForCodingSchemeMetadata(String, String, String, OntologyFormat) - Method in class org.LexGrid.LexBIG.Impl.loaders.postprocessor.OntologyFormatAddingPostProcessor
 
updateRelation(String, String, Relations) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
updateRelation(String, String, Relations) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
updateRelation(String, String, Relations) - Method in interface org.lexevs.dao.database.service.relation.RelationService
Update relation.
updateRelation(String, String, Relations) - Method in class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
updateRelationEntryStateUId(String, String, String) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
updateRelationEntryStateUId(String, String, String) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
updateRelationProperty(String, String, String, Property) - Method in interface org.lexevs.dao.database.service.property.PropertyService
Update relation property.
updateRelationProperty(String, String, String, Property) - Method in class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
updateRelationVersionableChanges(String, String, Relations) - Method in interface org.lexevs.dao.database.access.association.AssociationDao
 
updateRelationVersionableChanges(String, String, Relations) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDao
 
updateRestrictionsView() - Method in class org.LexGrid.LexBIG.gui.LB_GUI
 
updateRow(String, Map, String, String) - Method in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
Runs SQL Statement "UPDATE" on the given tableName with attribute values and where clause.
updateTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.registry.service.XmlRegistry
Update tag.
updateTag(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Update tag.
updateTreeForConceptSelection(ResolvedConceptReference) - Method in class org.LexGrid.LexBIG.gui.displayResults.ConceptTreeView
 
updateURIMap(String, String, URIMap) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Update uri map.
updateURIMap(String, String, URIMap) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
updateURNVersion(AbsoluteCodingSchemeVersionReference, AbsoluteCodingSchemeVersionReference) - Method in class org.lexevs.registry.service.XmlRegistry
Activate a code system.
updateValueSetDefEntryStateUId(String, String) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
updateValueSetDefEntryStateUId(String, String) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
updateValueSetDefinition(String, ValueSetDefinition) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
updateValueSetDefinition(String, ValueSetDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
updateValueSetDefinition(ValueSetDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Update value set definition.
updateValueSetDefinition(ValueSetDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
updateValueSetDefinitionProperty(String, Property) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
updateValueSetDefinitionProperty(String, Property) - Method in interface org.lexevs.dao.database.service.valuesets.VSPropertyService
Update value set definition property.
updateValueSetDefinitionVersionableChanges(String, ValueSetDefinition) - Method in interface org.lexevs.dao.database.access.valuesets.ValueSetDefinitionDao
 
updateValueSetDefinitionVersionableChanges(String, ValueSetDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
updateVersion(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.registry.service.XmlRegistry
Update version.
updateVersion(AbsoluteCodingSchemeVersionReference, String) - Method in class org.lexevs.system.ResourceManager
Deprecated.
Update version.
updateVersionableAttributes(String, PickListDefinition) - Method in interface org.lexevs.dao.database.access.valuesets.PickListDao
 
updateVersionableAttributes(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.access.valuesets.PickListEntryNodeDao
 
updateVersionableAttributes(String, String, VSPropertyDao.ReferenceType, Property) - Method in interface org.lexevs.dao.database.access.valuesets.VSPropertyDao
 
updateVersionableAttributes(String, PickListDefinition) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
updateVersionableAttributes(String, PickListEntryNode) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListEntryNodeDao
 
updateVersionableAttributes(String, String, VSPropertyDao.ReferenceType, Property) - Method in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSPropertyDao
 
updateVersionableAttributes(PickListDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.PickListDefinitionService
Update versionable attributes.
updateVersionableAttributes(String, PickListEntryNode) - Method in interface org.lexevs.dao.database.service.valuesets.PickListEntryNodeService
Update versionable attributes.
updateVersionableAttributes(ValueSetDefinition) - Method in interface org.lexevs.dao.database.service.valuesets.ValueSetDefinitionService
Update versionable attributes.
updateVersionableAttributes(PickListDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
updateVersionableAttributes(String, PickListEntryNode) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
updateVersionableAttributes(ValueSetDefinition) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
updateVersionableChanges(String, String, AssociationData) - Method in interface org.lexevs.dao.database.access.association.AssociationDataDao
 
updateVersionableChanges(String, String, AssociationTarget) - Method in interface org.lexevs.dao.database.access.association.AssociationTargetDao
 
updateVersionableChanges(String, String, AssociationData) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationDataDao
 
updateVersionableChanges(String, String, AssociationTarget) - Method in class org.lexevs.dao.database.ibatis.association.IbatisAssociationTargetDao
 
updateVSDefinitionEntry(String, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
updateVSDefinitionEntry(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Update vs definition entry.
updateVSDefinitionEntryVersionableChanges(String, DefinitionEntry) - Method in class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
updateVSDefinitionEntryVersionableChanges(String, DefinitionEntry) - Method in interface org.lexevs.dao.database.service.valuesets.VSDefinitionEntryService
Update vs definition entry versionable changes.
updateVSDProperty(Property, Property) - Method in class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
URI_MISSING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LGConstants
 
URI_MISSING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LGConstants
 
URI_VERSION_SEPARATOR - Static variable in class org.LexGrid.LexBIG.Impl.dataAccess.CleanUpUtility
 
URIBase - Class in edu.mayo.informatics.lexgrid.convert.formats.baseFormats
Common bits for formats that read or write from a file.
URIBase() - Constructor for class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
 
UriBasedHistoryLoader - Interface in org.LexGrid.LexBIG.Extensions.Load
 
UriBasedHistoryLoaderImpl - Class in org.LexGrid.LexBIG.Impl.loaders
 
UriBasedHistoryLoaderImpl(String) - Constructor for class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
UriBasedHistoryServiceImpl - Class in org.LexGrid.LexBIG.Impl.History
The Class UriBasedHistoryServiceImpl.
UriBasedHistoryServiceImpl() - Constructor for class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
USED ONLY BY PROXIES -- DON'T USE THIS CONSTRUCTOR!
UriBasedHistoryServiceImpl(String) - Constructor for class org.LexGrid.LexBIG.Impl.History.UriBasedHistoryServiceImpl
Instantiates a new uri based history service impl.
URIBasedHistoryServiceTest - Class in org.LexGrid.LexBIG.Impl.History
 
URIBasedHistoryServiceTest() - Constructor for class org.LexGrid.LexBIG.Impl.History.URIBasedHistoryServiceTest
 
URIMap - Class in org.LexGrid.naming
A local identifier that is used in a specific context (e.g.
URIMap() - Constructor for class org.LexGrid.naming.URIMap
 
URIMap(String) - Constructor for class org.LexGrid.naming.URIMap
 
URIMapDescriptor - Class in org.LexGrid.naming.descriptors
Class URIMapDescriptor.
URIMapDescriptor() - Constructor for class org.LexGrid.naming.descriptors.URIMapDescriptor
 
URIOption - Class in edu.mayo.informatics.lexgrid.convert.options
The Class URIOption.
URIOption(String) - Constructor for class edu.mayo.informatics.lexgrid.convert.options.URIOption
Instantiates a new uRI option.
URIOption - Interface in org.LexGrid.LexBIG.Extensions.Load.options
The Interface URIOption.
URIPREFIX - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.mrmap.MRMAP2LexGrid
 
URIPREFIX - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
URL - Static variable in class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
urn - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The urn.
urn - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The urn.
urn - Variable in class org.lexevs.registry.service.XmlRegistry.HistoryEntry
The urn.
URN_DELIM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
URN_DELIM - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
urnOruri - Variable in class org.LexGrid.util.sql.lgTables.SQLTableConstants
 
URNVersionPair - Class in edu.mayo.informatics.lexgrid.convert.utility
 
URNVersionPair(String, String) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.URNVersionPair
 
urnVersionPairToAbsoluteCodingSchemeVersionReference(URNVersionPair[]) - Method in class org.LexGrid.LexBIG.Impl.loaders.BaseLoader
 
USAGE_CONTEXT_DEFAULT_CODING_SCHEME_FORMAL_NAME - Static variable in class org.lexgrid.usagecontext.util.UsageContextConstants
 
USAGE_CONTEXT_DEFAULT_CODING_SCHEME_LOCAL_NAME - Static variable in class org.lexgrid.usagecontext.util.UsageContextConstants
 
USAGE_CONTEXT_DEFAULT_CODING_SCHEME_URI - Static variable in class org.lexgrid.usagecontext.util.UsageContextConstants
 
USAGE_CONTEXT_DEFAULT_CODING_SCHEME_VERSION - Static variable in class org.lexgrid.usagecontext.util.UsageContextConstants
 
USAGE_CONTEXT_ENTITY_TYPE - Static variable in class org.lexgrid.usagecontext.util.UsageContextConstants
 
UsageContextConstants - Class in org.lexgrid.usagecontext.util
 
UsageContextConstants() - Constructor for class org.lexgrid.usagecontext.util.UsageContextConstants
 
usageContexts - Variable in class org.LexGrid.LexBIG.gui.restrictions.HavingProperties
 
USE_COMPOUND_FMT - Static variable in class edu.mayo.informatics.lexgrid.convert.formats.Option
 
useCompoundFile_ - Variable in class org.lexevs.dao.index.indexer.LuceneLoaderCode
The use compound file_.
username - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.LDAPBase
 
username - Variable in class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.SQLBase
 
username - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The username.
Util - Class in org.LexGrid.LexBIG.admin
Common utility functions required by admin tasks.
Util() - Constructor for class org.LexGrid.LexBIG.admin.Util
 
Util - Class in org.lexgrid.valuesets.admin
Common utility functions required by admin tasks.
Util() - Constructor for class org.lexgrid.valuesets.admin.Util
 
UtilDeprecate - Class in org.lexgrid.valuesets.admin
Common utility functions required by admin tasks.
UtilDeprecate() - Constructor for class org.lexgrid.valuesets.admin.UtilDeprecate
 
Utility - Class in org.lexevs.dao.indexer.utility
Small utility type routines used in the indexer.
Utility() - Constructor for class org.lexevs.dao.indexer.utility.Utility
 
Utility - Class in org.LexGrid.LexBIG.gui
SWT Utility methods to simplify building SWT GUIs - methods to create labels, buttons, etc.
Utility() - Constructor for class org.LexGrid.LexBIG.gui.Utility
 
Utility - Class in org.LexGrid.util
A couple of utility type methods.
Utility() - Constructor for class org.LexGrid.util.Utility
 

V

validate() - Method in interface edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.interfaces.PreferenceLoader
Validates the loaded Preference XML file against the appropriate XSD
validate(URI, URL) - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.BasePreferenceLoader
Validates an XML Preferences file against a given XSD schema
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.HL7PreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.MetaPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OBOPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.OWLPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.SemNetPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.UMLSPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate() - Method in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.XMLPreferenceLoader
Validates an XML preferences file against its corresponding XSD.
validate(Object) - Method in class edu.mayo.informatics.lexgrid.convert.validator.AbstractValidator
 
validate(Object) - Method in class edu.mayo.informatics.lexgrid.convert.validator.processor.ReflectionValidationProcessor
 
validate(T) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.processor.ValidationProcessor
Validate.
validate(Object) - Method in interface edu.mayo.informatics.lexgrid.convert.validator.Validator
Validate.
validate() - Method in class org.LexGrid.builtins.TsAnyType
 
validate() - Method in class org.LexGrid.codingSchemes.CodingScheme
 
validate() - Method in class org.LexGrid.codingSchemes.CodingSchemes
 
validate() - Method in class org.LexGrid.commonTypes.Describable
 
validate() - Method in class org.LexGrid.commonTypes.EntityDescription
 
validate() - Method in class org.LexGrid.commonTypes.Properties
 
validate() - Method in class org.LexGrid.commonTypes.Property
 
validate() - Method in class org.LexGrid.commonTypes.PropertyQualifier
 
validate() - Method in class org.LexGrid.commonTypes.Source
 
validate() - Method in class org.LexGrid.commonTypes.Text
 
validate() - Method in class org.LexGrid.commonTypes.Versionable
 
validate() - Method in class org.LexGrid.commonTypes.VersionableAndDescribable
 
validate() - Method in class org.LexGrid.concepts.Comment
 
validate() - Method in class org.LexGrid.concepts.Definition
 
validate() - Method in class org.LexGrid.concepts.Entities
 
validate() - Method in class org.LexGrid.concepts.Entity
 
validate() - Method in class org.LexGrid.concepts.Presentation
 
validate() - Method in class org.LexGrid.concepts.PropertyLink
 
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.ClaML_Loader
 
validate(String, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.HL7_Loader
 
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.LexGrid_Loader
Validate content for a candidate resource without performing a load.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MedDRA_Loader
Validate content for a candidate resource without performing a load.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MIFVocabularyLoader
Validate content for a candidate resource without performing a load.
validate(String, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MrMap_Loader
Validate content for a candidate resource without performing a load.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCI_MetaThesaurusLoader
Validate content for a candidate resource without performing a load.
validate(URI, URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.NCIHistoryLoader
Validate history for a candidate resource without performing a load.
validate(URI, URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OBO_Loader
Validate content for a candidate resource without performing a load.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OBOHistoryLoader
Validate history for a candidate resource without performing a load.
validate(URI, URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OWL2_Loader
Validate content for a candidate resource without performing a load.
validate(URI, URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.OWL_Loader
Validate content for a candidate resource without performing a load.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.ResolvedValueSetDefinitionLoader
 
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.SourceAssertedVStoCodingSchemeLoader
 
validate(URI, Character, boolean, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.Text_Loader
Validate content for a candidate resource without performing a load.
validate(URI, String, String, String, LocalNameList, int, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Validate content for a candidate resource without performing a load.
validate(URI, String, String, String, LocalNameList, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Validate content for a candidate resource without performing a load.
validate(URI, LocalNameList, int, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Validate content from RRF files.
validate(URI, LocalNameList, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Validate content from RRF files.
validate(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLSHistoryLoader
Validate history for a candidate resource without performing a load.
validate(URI, URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UriBasedHistoryLoader
 
validate(URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.ClaMLLoaderImpl
 
validate(String, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.HL7LoaderImpl
 
VALIDATE - Static variable in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
validate(URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.LexGridMultiLoaderImpl
 
validate(URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MedDRALoaderImpl
 
VALIDATE - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
validate(URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MIFVocabularyLoaderImpl
 
VALIDATE - Static variable in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
validate(String, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MrmapRRFLoader
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.NCIHistoryLoaderImpl
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.OBOLoaderImpl
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWL2LoaderImpl
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.OWLLoaderImpl
 
validate(URI, Character, boolean, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.TextLoaderImpl
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
validate(URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.UMLSHistoryLoaderImpl
 
validate(URI, URI, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.UriBasedHistoryLoaderImpl
 
validate() - Method in class org.LexGrid.LexOnt.CodingSchemeManifest
 
validate() - Method in class org.LexGrid.LexOnt.CodingSchemeManifestList
 
validate() - Method in class org.LexGrid.LexOnt.CsmfAssociationDefinition
 
validate() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeName
 
validate() - Method in class org.LexGrid.LexOnt.CsmfCodingSchemeURI
 
validate() - Method in class org.LexGrid.LexOnt.CsmfDefaultLanguage
 
validate() - Method in class org.LexGrid.LexOnt.CsmfEntityDescription
 
validate() - Method in class org.LexGrid.LexOnt.CsmfFormalName
 
validate() - Method in class org.LexGrid.LexOnt.CsmfLocalName
 
validate() - Method in class org.LexGrid.LexOnt.CsmfMappings
 
validate() - Method in class org.LexGrid.LexOnt.CsmfSource
 
validate() - Method in class org.LexGrid.LexOnt.CsmfText
 
validate() - Method in class org.LexGrid.LexOnt.CsmfVersion
 
validate(List<I>) - Method in class org.lexgrid.loader.processor.support.validator.ListValidatorAdapter
 
validate(AssociationSource) - Method in class org.lexgrid.loader.processor.support.validator.NamespaceSizeValidator
 
validate(URI, int) - Method in class org.lexgrid.loader.ResolvedValueSetDefinitionLoaderImpl
 
validate() - Method in class org.LexGrid.naming.Mappings
 
validate() - Method in class org.LexGrid.naming.SupportedAssociation
 
validate() - Method in class org.LexGrid.naming.SupportedAssociationQualifier
 
validate() - Method in class org.LexGrid.naming.SupportedCodingScheme
 
validate() - Method in class org.LexGrid.naming.SupportedConceptDomain
 
validate() - Method in class org.LexGrid.naming.SupportedContainerName
 
validate() - Method in class org.LexGrid.naming.SupportedContext
 
validate() - Method in class org.LexGrid.naming.SupportedDataType
 
validate() - Method in class org.LexGrid.naming.SupportedDegreeOfFidelity
 
validate() - Method in class org.LexGrid.naming.SupportedEntityType
 
validate() - Method in class org.LexGrid.naming.SupportedHierarchy
 
validate() - Method in class org.LexGrid.naming.SupportedLanguage
 
validate() - Method in class org.LexGrid.naming.SupportedNamespace
 
validate() - Method in class org.LexGrid.naming.SupportedProperty
 
validate() - Method in class org.LexGrid.naming.SupportedPropertyLink
 
validate() - Method in class org.LexGrid.naming.SupportedPropertyQualifier
 
validate() - Method in class org.LexGrid.naming.SupportedPropertyQualifierType
 
validate() - Method in class org.LexGrid.naming.SupportedPropertyType
 
validate() - Method in class org.LexGrid.naming.SupportedRepresentationalForm
 
validate() - Method in class org.LexGrid.naming.SupportedSortOrder
 
validate() - Method in class org.LexGrid.naming.SupportedSource
 
validate() - Method in class org.LexGrid.naming.SupportedSourceRole
 
validate() - Method in class org.LexGrid.naming.SupportedStatus
 
validate() - Method in class org.LexGrid.naming.URIMap
 
validate() - Method in class org.LexGrid.relations.AssociatableElement
 
validate() - Method in class org.LexGrid.relations.AssociationData
 
validate() - Method in class org.LexGrid.relations.AssociationEntity
 
validate() - Method in class org.LexGrid.relations.AssociationPredicate
 
validate() - Method in class org.LexGrid.relations.AssociationQualification
 
validate() - Method in class org.LexGrid.relations.AssociationSource
 
validate() - Method in class org.LexGrid.relations.AssociationTarget
 
validate() - Method in class org.LexGrid.relations.Relations
 
validate() - Method in class org.LexGrid.valueSets.CodingSchemeReference
 
validate() - Method in class org.LexGrid.valueSets.DefinitionEntry
 
validate() - Method in class org.LexGrid.valueSets.EntityReference
 
validate(URI, int) - Method in class org.lexgrid.valuesets.impl.LexEVSPickListDefinitionServicesImpl
 
validate(URI, int) - Method in class org.lexgrid.valuesets.impl.LexEVSValueSetDefinitionServicesImpl
 
validate(URI, int) - Method in interface org.lexgrid.valuesets.LexEVSPickListDefinitionServices
 
validate(URI, int) - Method in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
Perform validation of the candidate resource without loading data.
validate() - Method in class org.LexGrid.valueSets.PickListDefinition
 
validate() - Method in class org.LexGrid.valueSets.PickListDefinitions
 
validate() - Method in class org.LexGrid.valueSets.PickListEntry
 
validate() - Method in class org.LexGrid.valueSets.PickListEntryExclusion
 
validate() - Method in class org.LexGrid.valueSets.PickListEntryNode
 
validate() - Method in class org.LexGrid.valueSets.PickListEntryNodeChoice
 
validate() - Method in class org.LexGrid.valueSets.PropertyMatchValue
 
validate() - Method in class org.LexGrid.valueSets.PropertyReference
 
validate() - Method in class org.LexGrid.valueSets.ValueSetDefinition
 
validate() - Method in class org.LexGrid.valueSets.ValueSetDefinitionReference
 
validate() - Method in class org.LexGrid.valueSets.ValueSetDefinitions
 
validate() - Method in class org.LexGrid.versions.ChangedEntry
 
validate() - Method in class org.LexGrid.versions.CodingSchemeVersion
 
validate() - Method in class org.LexGrid.versions.EditHistory
 
validate() - Method in class org.LexGrid.versions.EntityVersion
 
validate() - Method in class org.LexGrid.versions.EntryState
 
validate() - Method in class org.LexGrid.versions.Revision
 
validate() - Method in class org.LexGrid.versions.SystemRelease
 
validateAuxiliaryData(URI, AbsoluteCodingSchemeVersionReference, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Validate content for a candidate resource without performing a load.
validateAuxiliaryData(URI, AbsoluteCodingSchemeVersionReference, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
validateContext(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Validate context.
validateContext(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
validated - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
ValidatedParameterResolvingCallback - Interface in org.LexGrid.LexBIG.Impl.pagedgraph.utility
 
validatedSupportedAttribute(String, String, String, Class<T>) - Method in interface org.lexevs.dao.database.service.codingscheme.CodingSchemeService
Validated supported attribute.
validatedSupportedAttribute(String, String, String, Class<T>) - Method in class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
validateFile(URI, URI, String, boolean) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.NCIThesaurusHistoryFileToSQL
Reads all or part of the file, makes sure that the content is the expected format.
validateFile(URI, String, boolean) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UMLSHistoryFileToSQL
 
validateFilters(LocalNameList) - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GHolder
 
validateFilters(LocalNameList) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Validate filters.
validateLanguage(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Validate language.
validateLanguage(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
validateLexGridManifest(URI, AbsoluteCodingSchemeVersionReference, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.MetaData_Loader
Validate content for a candidate resource without performing a load.
validateLexGridManifest(URI, AbsoluteCodingSchemeVersionReference, int) - Method in class org.LexGrid.LexBIG.Impl.loaders.MetaDataLoaderImpl
 
validateMedDRABeans() - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.MedDRAMapToLexGrid
 
validateParameter(String, String, LocalNameList, Class<? extends URIMap>) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Validate parameter.
validateParameter(String, String, String, Class<? extends URIMap>) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Validate parameter.
validateProperty(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Validate property.
validateProperty(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
validatePropertyQualifier(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Validate property qualifier.
validatePropertyQualifier(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
validateRRF(URI, boolean, LgMessageDirectorIF) - Static method in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.LoadRRFToDB
 
validateSemnet(URI, int) - Method in interface org.LexGrid.LexBIG.Extensions.Load.UMLS_Loader
Validate UMLS semantic network files prior to performing a load operation.
validateSortOptionForClass(SortOption, Class) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Validate sort option for class.
validateSortOptionForClasses(SortOption, Class[]) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Validate sort option for classes.
validateSortOptions(SortOptionList) - Static method in class org.LexGrid.LexBIG.Utility.ServiceUtility
Validate sort options.
validateSortsForClasses(Class[]) - Method in class org.LexGrid.LexBIG.Impl.helpers.comparator.ResultComparator
Validate sorts for classes.
validateSource(String, String, String) - Method in class org.lexevs.dao.database.sqlimplementedmethods.SQLImplementedMethodsDao
Validate source.
validateSource(String, String, String) - Static method in class org.LexGrid.LexBIG.Impl.dataAccess.SQLImplementedMethods
Deprecated.
 
validateSupportedAttribute(String, String, Class<T>) - Method in interface org.lexevs.dao.database.access.codingscheme.CodingSchemeDao
Validate supported attribute.
validateSupportedAttribute(String, String, Class<T>) - Method in class org.lexevs.dao.database.ibatis.codingscheme.IbatisCodingSchemeDao
 
validateSupportedAttribute(String, String, Class<T>) - Method in class org.lexevs.dao.database.sqlimplementedmethods.codingscheme.SQLInterfaceCodingSchemeDao
 
validateSupportedAttribute(String, String, String, Class<? extends URIMap>) - Method in class org.LexGrid.LexBIG.Impl.codedNodeSetOperations.RestrictToProperties
 
validateTreeContent() - Method in class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
ValidationProcessor<T> - Interface in edu.mayo.informatics.lexgrid.convert.validator.processor
The Interface ValidationProcessor.
Validator - Interface in edu.mayo.informatics.lexgrid.convert.validator
The Interface Validator.
validLocalName(String) - Static method in class org.LexGrid.util.sql.DBUtility
Checks the validity of the Local Name
validRevision(I, T) - Method in class org.lexevs.dao.database.service.RevisableAbstractDatabaseService
Valid revision.
value - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode.ConceptPresentation
Deprecated.
 
value() - Method in enum org.LexGrid.commonTypes.types.EntityTypes
Method value.
value() - Method in enum org.LexGrid.commonTypes.types.PropertyTypes
Method value.
value() - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
Method value.
value() - Method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
Method value.
value() - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
Method value.
value() - Method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
Method value.
value() - Method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
Method value.
value() - Method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
Method value.
VALUE - Static variable in class org.lexgrid.lexevs.ndfrt.NdfrtConstants
 
value() - Method in enum org.LexGrid.valueSets.types.DefinitionOperator
Method value.
value() - Method in enum org.LexGrid.versions.types.ChangeType
Method value.
valueOf(String) - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.ClassKinds
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.RubricKinds
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.mayo.informatics.lexgrid.convert.validator.error.LoadValidationError.Severity
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport.ResolutionStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao.TripleNode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.access.property.PropertyDao.PropertyType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.access.valuesets.VSPropertyDao.ReferenceType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.access.versions.VersionsDao.EntryStateType
Returns the enum constant of this type with the specified name.
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.DateTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NCIHistoryChangeTypeTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.NumericBooleanTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.PropertyTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.StringArrayTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.ibatis.sqlmap.VariablePrimaryKeyTypeHandler
 
valueOf(String) - Method in class org.lexevs.dao.database.key.incrementer.AbstractBigIntKeyIncrementer
 
valueOf(String) - Static method in enum org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer.KeyType
Returns the enum constant of this type with the specified name.
valueOf(String) - Method in interface org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer
Value of.
valueOf(String) - Method in class org.lexevs.dao.database.key.incrementer.RandomGuidKeyIncrementer
 
valueOf(String) - Static method in enum org.lexevs.dao.database.operation.LexEvsDatabaseOperations.RootOrTail
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.operation.LexEvsDatabaseOperations.TraverseAssociations
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.operation.transitivity.TransitivityBuilder.TransitivityTableState
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Order
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.setup.script.ScriptFactory.ScriptType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.database.type.DatabaseType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.index.indexer.IndexCreator.IndexOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao.BitSetOp
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.registry.service.Registry.KnownTags
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.registry.service.Registry.ResourceType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.tree.dao.LexEvsTreeDao.Direction
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexevs.tree.model.LexEvsTreeNode.ExpandableStatus
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.commonTypes.types.EntityTypes
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.commonTypes.types.PropertyTypes
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.exporter.owlrdf.StringHelper.StrFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods.HierarchyPathResolveOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Direction
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping.SearchContext
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.MappingSortOptionName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.SearchExtension.MatchAlgorithm
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Extensions.Load.OntologyFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao.Direction
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode.ExpandableStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder.AssociationDirection
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.root.RootsResolver.ResolveDirection
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.ActiveOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.AnonymousOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.PropertyType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.SearchDesignationOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.KnownTags
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.MatchAlgorithms
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.SortableProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.processor.EntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.rrf.constants.RrfLoaderConstants.RrfRelationType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.rrf.factory.MrsatUsageFactory.MrsatPropertyTypes
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver.Aui
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver.AuiType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.util.assertedvaluesets.AssertedValueSetServices.BaseName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.valueSets.types.DefinitionOperator
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.LexGrid.versions.types.ChangeType
Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.ClassKinds
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants.RubricKinds
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRA_Metadata
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.mayo.informatics.lexgrid.convert.validator.error.LoadValidationError.Severity
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.mayo.informatics.lexgrid.convert.validator.resolution.ErrorResolutionReport.ResolutionStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in interface org.lexevs.cache.CacheRegistry.CacheWrapper
 
values() - Method in class org.lexevs.cache.CacheRegistry.EhCacheWrapper
 
values() - Static method in enum org.lexevs.dao.database.access.codednodegraph.CodedNodeGraphDao.TripleNode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.access.property.PropertyDao.PropertyType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.access.valuesets.VSPropertyDao.ReferenceType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.access.versions.VersionsDao.EntryStateType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.key.incrementer.PrimaryKeyIncrementer.KeyType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.operation.LexEvsDatabaseOperations.RootOrTail
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.operation.LexEvsDatabaseOperations.TraverseAssociations
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.operation.transitivity.TransitivityBuilder.TransitivityTableState
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.service.codednodegraph.CodedNodeGraphService.Order
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.service.codednodegraph.model.ColumnSortType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.setup.script.ScriptFactory.ScriptType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.database.type.DatabaseType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.index.indexer.IndexCreator.IndexOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.dao.index.lucene.v2010.entity.LuceneEntityDao.BitSetOp
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.registry.service.Registry.KnownTags
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.registry.service.Registry.ResourceType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.tree.dao.LexEvsTreeDao.Direction
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexevs.tree.model.LexEvsTreeNode.ExpandableStatus
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.commonTypes.types.EntityTypes
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.commonTypes.types.PropertyTypes
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.exporter.owlrdf.StringHelper.StrFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.DataModel.Core.types.LogLevel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.LexBIGServiceConvenienceMethods.HierarchyPathResolveOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Direction
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.Mapping.SearchContext
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.MappingExtension.MappingSortOptionName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Generic.SearchExtension.MatchAlgorithm
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Extensions.Load.OntologyFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Impl.Extensions.tree.dao.LexEvsTreeDao.Direction
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Impl.Extensions.tree.model.LexEvsTreeNode.ExpandableStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.builder.AssociationListBuilder.AssociationDirection
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.PagingCodedNodeGraphImpl.ArtificialRootResolvePolicy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Impl.pagedgraph.root.RootsResolver.ResolveDirection
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.ActiveOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.AnonymousOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.PropertyType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.LexBIGService.CodedNodeSet.SearchDesignationOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.KnownTags
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.MatchAlgorithms
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.LexBIG.Utility.LBConstants.SortableProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.processor.EntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.processor.MedRtEntityAssnsToEntityProcessor.SelfReferencingAssociationPolicy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.rrf.constants.RrfLoaderConstants.RrfRelationType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.rrf.factory.MrsatUsageFactory.MrsatPropertyTypes
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.rrf.processor.support.MrrelAuiPropertyIdResolver.Aui
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.lexgrid.loader.rrf.processor.support.MrrelAuiResolver.AuiType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.util.assertedvaluesets.AssertedValueSetServices.BaseName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.valueSets.types.DefinitionOperator
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.LexGrid.versions.types.ChangeType
Returns an array containing the constants of this enum type, in the order they are declared.
ValueSetDaoTest - Class in org.lexevs.dao.index.lucene.v2013.search
 
ValueSetDaoTest() - Constructor for class org.lexevs.dao.index.lucene.v2013.search.ValueSetDaoTest
 
ValueSetDefCodingSchemeFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefCodingSchemeFilter(LB_VSD_GUI, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefCodingSchemeFilter
 
ValueSetDefConceptDomainFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefConceptDomainFilter(LB_VSD_GUI, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefConceptDomainFilter
 
ValueSetDefEntityCodeFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefEntityCodeFilter(LB_VSD_GUI, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefEntityCodeFilter
 
valueSetDefinition - Variable in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
ValueSetDefinition - Class in org.LexGrid.valueSets
A definition of a given value set.
ValueSetDefinition() - Constructor for class org.LexGrid.valueSets.ValueSetDefinition
 
VALUESETDEFINITION_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
ValueSetDefinitionCompiler - Interface in org.lexgrid.valuesets.helper.compiler
The Interface ValueSetDefinitionCompiler.
ValueSetDefinitionContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Value Set Definition SWT Table.
ValueSetDefinitionContentProvider(LB_VSD_GUI) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionContentProvider
 
ValueSetDefinitionDao - Interface in org.lexevs.dao.database.access.valuesets
The Interface ValueSetDefinitionDao.
ValueSetDefinitionDescriptor - Class in org.LexGrid.valueSets.descriptors
Class ValueSetDefinitionDescriptor.
ValueSetDefinitionDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.ValueSetDefinitionDescriptor
 
ValueSetDefinitionDetails - Class in org.LexGrid.LexBIG.gui
Class for displaying value sets details.
ValueSetDefinitionDetails(LB_VSD_GUI, Shell, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
ValueSetDefinitionDetails(Shell, PickListDefinition) - Constructor for class org.LexGrid.LexBIG.gui.ValueSetDefinitionDetails
 
valueSetDefinitionGuid - Variable in class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
ValueSetDefinitionLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition SWT table view.
ValueSetDefinitionLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefinitionLabelProvider
 
ValueSetDefinitionMapHelper - Class in org.lexevs.dao.database.ibatis.valuesets.helper
 
ValueSetDefinitionMapHelper() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.helper.ValueSetDefinitionMapHelper
 
ValueSetDefinitionReference - Class in org.LexGrid.valueSets
A reference to the set of codes defined in another value set definition.
ValueSetDefinitionReference() - Constructor for class org.LexGrid.valueSets.ValueSetDefinitionReference
 
ValueSetDefinitionReferenceDescriptor - Class in org.LexGrid.valueSets.descriptors
Class ValueSetDefinitionReferenceDescriptor.
ValueSetDefinitionReferenceDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.ValueSetDefinitionReferenceDescriptor
 
ValueSetDefinitions - Class in org.LexGrid.valueSets
A collection of value set definitions.
ValueSetDefinitions() - Constructor for class org.LexGrid.valueSets.ValueSetDefinitions
 
ValueSetDefinitionsDescriptor - Class in org.LexGrid.valueSets.descriptors
Class ValueSetDefinitionsDescriptor.
ValueSetDefinitionsDescriptor() - Constructor for class org.LexGrid.valueSets.descriptors.ValueSetDefinitionsDescriptor
 
ValueSetDefinitionSelectionMenu - Class in org.LexGrid.LexBIG.example
Helper class used to display a list of available value set definitions and return the user selection.
ValueSetDefinitionSelectionMenu() - Constructor for class org.LexGrid.LexBIG.example.ValueSetDefinitionSelectionMenu
 
ValueSetDefinitionService - Interface in org.lexevs.dao.database.service.valuesets
The Interface ValueSetDefinitionService.
valueSetDefinitionToRegistryEntry(String, String) - Static method in class org.lexevs.registry.utility.RegistryUtility
Value Set Definition to registry entry.
ValueSetDefIsEntityInValueSetFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefIsEntityInValueSetFilter(LB_VSD_GUI, String, Mappings, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefIsEntityInValueSetFilter
 
ValueSetDefIsSubSet - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefIsSubSet(LB_VSD_GUI, String, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefIsSubSet
 
ValueSetDefReferenceContentProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Content provider for the Value Set Definition Reference Contents SWT Table.
ValueSetDefReferenceContentProvider(LB_VSD_GUI, ValueSetDefinition) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceContentProvider
 
ValueSetDefReferenceLabelProvider - Class in org.LexGrid.LexBIG.gui.valueSetsView
Label provider for the Value Set Definition Entry SWT table view.
ValueSetDefReferenceLabelProvider() - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceLabelProvider
 
ValueSetDefReferenceView - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefReferenceView(LB_VSD_GUI, ValueSetDefinitionDetails, Shell, ValueSetDefinition, DefinitionEntry) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefReferenceView
 
ValueSetDefResolveCSFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefResolveCSFilter(LB_VSD_GUI, ValueSetDefinition, Shell, boolean, boolean) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefResolveCSFilter
 
ValueSetDefResolveCSFilter(LB_VSD_GUI, String, Shell, boolean, boolean) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefResolveCSFilter
 
ValueSetDefTermFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefTermFilter(LB_VSD_GUI, String, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefTermFilter
 
ValueSetDefValueSetDefNameFilter - Class in org.LexGrid.LexBIG.gui.valueSetsView
 
ValueSetDefValueSetDefNameFilter(LB_VSD_GUI, Shell) - Constructor for class org.LexGrid.LexBIG.gui.valueSetsView.ValueSetDefValueSetDefNameFilter
 
ValueSetEntityDao - Class in org.lexevs.dao.index.lucene.v2013.search
 
ValueSetEntityDao() - Constructor for class org.lexevs.dao.index.lucene.v2013.search.ValueSetEntityDao
 
ValueSetHierarchyDao - Interface in org.lexevs.dao.database.access.valuesets
 
ValueSetHierarchyService - Interface in org.lexevs.dao.database.service.valuesets
 
ValueSetHierarchyServiceImpl - Class in org.lexevs.dao.database.service.valuesets
 
ValueSetHierarchyServiceImpl() - Constructor for class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceImpl
 
ValueSetHierarchyServiceTest - Class in org.lexevs.dao.database.service.valuesets
 
ValueSetHierarchyServiceTest() - Constructor for class org.lexevs.dao.database.service.valuesets.ValueSetHierarchyServiceTest
 
ValueSetResolutionMD5Generator - Class in org.lexgrid.valuesets.helper
 
ValueSetResolutionMD5Generator(URI, String, AbsoluteCodingSchemeVersionReferenceList, String) - Constructor for class org.lexgrid.valuesets.helper.ValueSetResolutionMD5Generator
 
ValueSetResolutionMD5Generator(ValueSetDefinition, HashMap<String, String>, String, HashMap<String, ValueSetDefinition>) - Constructor for class org.lexgrid.valuesets.helper.ValueSetResolutionMD5Generator
 
VARIABLE_KEY_SIZE_PLACEHOLDER - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
 
VARIABLE_KEY_TYPE_PLACEHOLDER - Static variable in class org.lexevs.dao.database.constants.DatabaseConstants
 
VariablePrimaryKeyTypeHandler - Class in org.lexevs.dao.database.ibatis.sqlmap
 
VariablePrimaryKeyTypeHandler() - Constructor for class org.lexevs.dao.database.ibatis.sqlmap.VariablePrimaryKeyTypeHandler
 
VDDisplayCodedNodeSet - Class in org.LexGrid.LexBIG.gui.displayResults
This class displays the results of a CodedNodeSet query in a shell.
VDDisplayCodedNodeSet(LB_VSD_GUI, CodedNodeGraph, SortOptionList, boolean, boolean, boolean, int, int, ConceptReference) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
VDDisplayCodedNodeSet(LB_VSD_GUI, CodedNodeSet, SortOptionList) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDDisplayCodedNodeSet
 
VDDisplayFilterResult - Class in org.LexGrid.LexBIG.gui.displayResults
This class displays the results of a Value Set Definition query in a shell.
VDDisplayFilterResult(LB_VSD_GUI, List<String>) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDDisplayFilterResult
 
VDGraphView - Class in org.LexGrid.LexBIG.gui.displayResults
Viewer for graphs, based off of one of the prefuse layout examples.
VDGraphView(Composite, VDDisplayCodedNodeSet) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDGraphView
 
VDGraphView.AutoPanAction - Class in org.LexGrid.LexBIG.gui.displayResults
 
VDGraphView.NodeColorAction - Class in org.LexGrid.LexBIG.gui.displayResults
 
VDGraphViewFilter - Class in org.LexGrid.LexBIG.gui.displayResults
Overrides behavior of the standard FisheyeTreeFilter to maintain visibility of all node connections.
VDGraphViewFilter(String, int, VDGraphView) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDGraphViewFilter
 
VDMyFocusControl - Class in org.LexGrid.LexBIG.gui.displayResults
Focus Listener for the graph to allow me to back select to a swt list..
VDMyFocusControl(int, String, VDDisplayCodedNodeSet) - Constructor for class org.LexGrid.LexBIG.gui.displayResults.VDMyFocusControl
 
verifyClaML(String) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLXMLReader
 
verifyIsMapping(String, String) - Method in class org.LexGrid.LexBIG.Impl.helpers.MappingCodingSchemeQueryRegistry
 
verifyResources() - Method in class org.LexGrid.LexBIG.example.ScoredIterator
Verifies the iterator is still valid.
VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.assertedValueSets.EntityToVSDTransFormerTest
 
VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.fma.FMA2LGConstants
 
version - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.medDRA.Data.MedDRARecord_meddra_release
 
VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.obo1_2.OBO2LGConstants
 
version - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.Constants
 
version - Variable in class org.lexevs.dao.database.connection.SQLConnectionInfo
The version.
VERSION - Static variable in class org.lexevs.dao.index.operation.SourceAssertedVSLoadTest
 
version - Variable in class org.lexevs.registry.service.XmlRegistry.DBEntry
The version.
version - Variable in class org.lexevs.system.model.LocalCodingScheme
The version.
VERSION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MedRtUmlsBatchLoader
 
VERSION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.MetaBatchLoader
 
VERSION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.ResolvedValueSetDefinitionLoader
 
VERSION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.SourceAssertedVStoCodingSchemeLoader
 
VERSION - Static variable in interface org.LexGrid.LexBIG.Extensions.Load.UmlsBatchLoader
 
version - Static variable in class org.LexGrid.LexBIG.gui.Constants
 
VERSION - Static variable in class org.LexGrid.util.assertedvaluesets.AssertedValueSetServices
 
VERSION - Static variable in interface org.lexgrid.valuesets.LexEVSValueSetDefinitionServices
 
version_ - Static variable in class org.LexGrid.LexBIG.Impl.exporters.BaseExporter
 
version_ - Static variable in class org.LexGrid.LexBIG.Impl.Extensions.Sort.MatchToQuerySort
 
version_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter
 
version_ - Static variable in class org.LexGrid.LexBIG.Impl.helpers.TestFilter2
 
Versionable - Class in org.LexGrid.commonTypes
A resource that can undergo change over time while maintaining its identity.
Versionable() - Constructor for class org.LexGrid.commonTypes.Versionable
 
VersionableAndDescribable - Class in org.LexGrid.commonTypes
A resource that is both versionable and describable.
VersionableAndDescribable() - Constructor for class org.LexGrid.commonTypes.VersionableAndDescribable
 
VersionableAndDescribableDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class VersionableAndDescribableDescriptor.
VersionableAndDescribableDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.VersionableAndDescribableDescriptor
 
VersionableDescriptor - Class in org.LexGrid.commonTypes.descriptors
Class VersionableDescriptor.
VersionableDescriptor() - Constructor for class org.LexGrid.commonTypes.descriptors.VersionableDescriptor
 
VersionableEntityServiceTest - Class in org.lexevs.dao.database.service.entity
The Class VersionableEntityServiceTest.
VersionableEntityServiceTest() - Constructor for class org.lexevs.dao.database.service.entity.VersionableEntityServiceTest
 
VersionableEventAssociationDataService - Class in org.lexevs.dao.database.service.association
The Class VersionableEventAssociationDataService.
VersionableEventAssociationDataService() - Constructor for class org.lexevs.dao.database.service.association.VersionableEventAssociationDataService
 
VersionableEventAssociationService - Class in org.lexevs.dao.database.service.association
The Class VersionableEventAssociationService.
VersionableEventAssociationService() - Constructor for class org.lexevs.dao.database.service.association.VersionableEventAssociationService
 
VersionableEventAssociationServiceTest - Class in org.lexevs.dao.database.service.association
The Class VersionableEventAssociationServiceTest.
VersionableEventAssociationServiceTest() - Constructor for class org.lexevs.dao.database.service.association.VersionableEventAssociationServiceTest
 
VersionableEventAssociationTargetService - Class in org.lexevs.dao.database.service.association
The Class VersionableEventAssociationTargetService.
VersionableEventAssociationTargetService() - Constructor for class org.lexevs.dao.database.service.association.VersionableEventAssociationTargetService
 
VersionableEventAuthoringService - Class in org.lexevs.dao.database.service.version
The Class VersionableEventVersionService.
VersionableEventAuthoringService() - Constructor for class org.lexevs.dao.database.service.version.VersionableEventAuthoringService
 
VersionableEventCodedNodeGraphService - Class in org.lexevs.dao.database.service.codednodegraph
The Class VersionableEventVersionService.
VersionableEventCodedNodeGraphService() - Constructor for class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphService
 
VersionableEventCodedNodeGraphServiceTest - Class in org.lexevs.dao.database.service.codednodegraph
The Class VersionableEventCodingSchemeServiceTest.
VersionableEventCodedNodeGraphServiceTest() - Constructor for class org.lexevs.dao.database.service.codednodegraph.VersionableEventCodedNodeGraphServiceTest
 
VersionableEventCodingSchemeService - Class in org.lexevs.dao.database.service.codingscheme
The Class VersionableEventCodingSchemeService.
VersionableEventCodingSchemeService() - Constructor for class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeService
 
VersionableEventCodingSchemeServiceTest - Class in org.lexevs.dao.database.service.codingscheme
The Class VersionableEventCodingSchemeServiceTest.
VersionableEventCodingSchemeServiceTest() - Constructor for class org.lexevs.dao.database.service.codingscheme.VersionableEventCodingSchemeServiceTest
 
VersionableEventCodingSchemeServiceTest.TestAnnotatedCodingSchemeService - Class in org.lexevs.dao.database.service.codingscheme
 
VersionableEventEntityService - Class in org.lexevs.dao.database.service.entity
The Class VersionableEventEntityService.
VersionableEventEntityService() - Constructor for class org.lexevs.dao.database.service.entity.VersionableEventEntityService
 
VersionableEventNciHistoryService - Class in org.lexevs.dao.database.service.ncihistory
The Class VersionableEventNciHistoryService.
VersionableEventNciHistoryService() - Constructor for class org.lexevs.dao.database.service.ncihistory.VersionableEventNciHistoryService
 
VersionableEventPickListDefinitionService - Class in org.lexevs.dao.database.service.valuesets
The Class VersionableEventPickListDefinitionService.
VersionableEventPickListDefinitionService() - Constructor for class org.lexevs.dao.database.service.valuesets.VersionableEventPickListDefinitionService
 
VersionableEventPickListEntryNodeService - Class in org.lexevs.dao.database.service.valuesets
The Class VersionableEventPickListEntryNodeService.
VersionableEventPickListEntryNodeService() - Constructor for class org.lexevs.dao.database.service.valuesets.VersionableEventPickListEntryNodeService
 
VersionableEventPropertyService - Class in org.lexevs.dao.database.service.property
The Class VersionableEventPropertyService.
VersionableEventPropertyService() - Constructor for class org.lexevs.dao.database.service.property.VersionableEventPropertyService
 
VersionableEventRelationService - Class in org.lexevs.dao.database.service.relation
The Class VersionableEventRelationService.
VersionableEventRelationService() - Constructor for class org.lexevs.dao.database.service.relation.VersionableEventRelationService
 
VersionableEventValueSetDefinitionService - Class in org.lexevs.dao.database.service.valuesets
The Class VersionableEventValueSetDefinitionService.
VersionableEventValueSetDefinitionService() - Constructor for class org.lexevs.dao.database.service.valuesets.VersionableEventValueSetDefinitionService
 
VersionableEventVSDefinitionEntryService - Class in org.lexevs.dao.database.service.valuesets
The Class VersionableEventVSDefinitionEntryService.
VersionableEventVSDefinitionEntryService() - Constructor for class org.lexevs.dao.database.service.valuesets.VersionableEventVSDefinitionEntryService
 
VersionableEventVSPropertyService - Class in org.lexevs.dao.database.service.valuesets
The Class VersionableEventVSPropertyService.
VersionableEventVSPropertyService() - Constructor for class org.lexevs.dao.database.service.valuesets.VersionableEventVSPropertyService
 
VersionablePropertyServiceTest - Class in org.lexevs.dao.database.service.property
The Class VersionableEntityServiceTest.
VersionablePropertyServiceTest() - Constructor for class org.lexevs.dao.database.service.property.VersionablePropertyServiceTest
 
VersionProperties - Class in org.LexGrid.LexBIG.gui
 
VersionProperties() - Constructor for class org.LexGrid.LexBIG.gui.VersionProperties
 
VERSIONS_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
The VERSION s_ namespace.
VERSIONS_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.revision.IbatisRevisionDao
The VERSION s_ namespace.
VERSIONS_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.systemRelease.IbatisSystemReleaseDao
The VERSION s_ namespace.
VERSIONS_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisVSEntryStateDao
The VERSION s_ namespace.
VERSIONS_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.versions.IbatisVersionsDao
 
VersionsDao - Interface in org.lexevs.dao.database.access.versions
The Interface VersionsDao.
VersionsDao.EntryStateType - Enum in org.lexevs.dao.database.access.versions
 
versionString - Static variable in class org.LexGrid.util.sql.lgTables.SQLTableUtilities
Deprecated.
 
VOCABULARYMODEL - Variable in class edu.mayo.informatics.lexgrid.convert.directConversions.hl7.mif.vocabulary.MifVocabParserHandler
 
VS_MAPPING_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
VS_MAPPING_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
VS_MULTIATTRIB_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisPickListDao
 
VS_MULTIATTRIB_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisValueSetDefinitionDao
 
VS_PROPERTY - Static variable in class org.lexevs.dao.database.ibatis.valuesets.IbatisSourceAssertedValueSetDao
 
VS_ROOT_URI - Static variable in interface org.lexevs.dao.database.service.valuesets.ValueSetHierarchyService
 
VSDConstants - Class in org.lexgrid.valuesets.helper
Constants used in value domain and pick list implementation.
VSDConstants() - Constructor for class org.lexgrid.valuesets.helper.VSDConstants
 
VSDefinitionEntryDao - Interface in org.lexevs.dao.database.access.valuesets
 
VSDefinitionEntryService - Interface in org.lexevs.dao.database.service.valuesets
The Interface VSDefinitionEntryService.
VSDObjectToString - Class in org.LexGrid.LexBIG.Utility
Class to turn LexBIG model objects into representative strings.
VSDObjectToString() - Constructor for class org.LexGrid.LexBIG.Utility.VSDObjectToString
 
VSDServiceHelper - Class in org.lexgrid.valuesets.helper
Helper class for Value Set Definition functions.
VSDServiceHelper(boolean, LgMessageDirectorIF) - Constructor for class org.lexgrid.valuesets.helper.VSDServiceHelper
Constructor
VSDSummary - Class in org.lexgrid.valuesets.dto
A reference to a value set definition.
VSDSummary() - Constructor for class org.lexgrid.valuesets.dto.VSDSummary
 
VSENTRYSTATE_NAMESPACE - Static variable in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
The VERSION s_ namespace.
VSEntryStateDao - Interface in org.lexevs.dao.database.access.valuesets
The Interface VSEntryStateDao.
vsEntryStateExists(String, String) - Method in class org.lexevs.dao.database.ibatis.AbstractIbatisDao
Method finds if the given entryState already exists.
VSHierarchyNode - Class in org.lexevs.dao.database.access.association.model
 
VSHierarchyNode() - Constructor for class org.lexevs.dao.database.access.association.model.VSHierarchyNode
 
VSPropertyBean - Class in org.lexevs.dao.database.ibatis.valuesets.parameter
 
VSPropertyBean() - Constructor for class org.lexevs.dao.database.ibatis.valuesets.parameter.VSPropertyBean
 
VSPropertyDao - Interface in org.lexevs.dao.database.access.valuesets
The Interface VSPropertyDao.
VSPropertyDao.ReferenceType - Enum in org.lexevs.dao.database.access.valuesets
The Enum ReferenceType.
VSPropertyService - Interface in org.lexevs.dao.database.service.valuesets
The Interface VSPropertyService.

W

walkTree(AssociationList) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
walkTree(AssociatedConcept) - Method in class org.LexGrid.LexBIG.Impl.pagedgraph.utility.KeyedGraph
 
warn(String) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a warning to the user.
warn(String, Throwable) - Method in interface edu.mayo.informatics.lexgrid.convert.utility.LgMessageDirectorIF
Display a warning to the user
warn(String) - Method in class org.lexevs.logging.Logger
 
warn(String, Throwable) - Method in class org.lexevs.logging.Logger
 
warn(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
warn(String) - Method in class org.lexevs.logging.messaging.impl.CachingMessageDirectorImpl
 
warn(String) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
warn(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.CommandLineMessageDirector
 
warn(String) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
warn(String, Throwable) - Method in class org.lexevs.logging.messaging.impl.NullMessageDirector
 
warn(String, Throwable) - Method in class org.lexevs.logging.SimpleLogger
 
warn(String) - Method in class org.lexevs.logging.SimpleLogger
 
warn(String) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
warn(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.exporters.ExporterMessageDirector
 
warn(String) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
warn(String, Throwable) - Method in class org.LexGrid.LexBIG.Impl.loaders.MessageDirector
 
warn(String) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a warning to the user.
warn(String, Throwable) - Method in interface org.LexGrid.LexBIG.Utility.logging.LgMessageDirectorIF
Display a warning to the user
warning(SAXParseException) - Method in class org.LexGrid.LexBIG.Impl.helpers.SAXPrintHandler
 
WeightedDoubleMetaphoneSearch - Class in org.LexGrid.LexBIG.Impl.Extensions.Search
The Class WeightedDoubleMetaphoneSearch.java.
WeightedDoubleMetaphoneSearch() - Constructor for class org.LexGrid.LexBIG.Impl.Extensions.Search.WeightedDoubleMetaphoneSearch
 
wereScoresCollected() - Method in class org.LexGrid.LexBIG.Impl.helpers.DefaultCodeHolder
 
whereClause_ - Variable in class org.lexevs.dao.database.sqlimplementedmethods.codednodegraph.model.GraphQuestionQuery
The where clause_.
whereClause_ - Variable in class org.LexGrid.LexBIG.Impl.helpers.GraphQuestionQuery
 
white - Variable in class org.LexGrid.LexBIG.gui.displayResults.TextContent
 
willSort() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GAssociationComparator
Deprecated.
 
willSort() - Method in class org.LexGrid.LexBIG.Impl.helpers.graph.GNodeComparator
Deprecated.
 
wrapForCaching(T) - Method in class org.lexevs.cache.CacheWrappingFactory
 
WrappedConnection - Class in org.LexGrid.util.sql.sqlReconnect
Deprecated.
WrappedConnection(String, String, String, String) - Constructor for class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
WrappedConnection(String, String, String, String, boolean) - Constructor for class org.LexGrid.util.sql.sqlReconnect.WrappedConnection
Deprecated.
 
WrappedPreparedStatement - Class in org.LexGrid.util.sql.sqlReconnect
Deprecated.
WrappedPreparedStatement(WrappedConnection, String) - Constructor for class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
WrappedPreparedStatement(WrappedConnection, String, int, int) - Constructor for class org.LexGrid.util.sql.sqlReconnect.WrappedPreparedStatement
Deprecated.
 
WrapperConstants - Class in org.LexGrid.util.sql.sqlReconnect
Constants for the SQL Wrapper Classes.
WrapperConstants() - Constructor for class org.LexGrid.util.sql.sqlReconnect.WrapperConstants
 
WrappingLoadValidationError - Class in edu.mayo.informatics.lexgrid.convert.validator.error
The Class WrappingdLoadValidationError.
WrappingLoadValidationError(LoadValidationError, ErrorResolutionReport) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
Instantiates a new wrappingd load validation error.
WrappingLoadValidationError(DatabaseError) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
 
WrappingLoadValidationError(LoadValidationError) - Constructor for class edu.mayo.informatics.lexgrid.convert.validator.error.WrappingLoadValidationError
Instantiates a new wrappingd load validation error.
wrapServiceForErrorHandling(T, ErrorCallbackListener) - Method in class org.lexevs.dao.database.service.DatabaseServiceManager
Wrap service for error handling.
write(char[], int, int) - Method in class org.LexGrid.LexBIG.gui.logging.CustomStringWriter
 
write(int) - Method in class org.LexGrid.LexBIG.gui.logging.CustomStringWriter
 
write(String, int, int) - Method in class org.LexGrid.LexBIG.gui.logging.CustomStringWriter
 
write(String) - Method in class org.LexGrid.LexBIG.gui.logging.CustomStringWriter
 
write(List<? extends CodingSchemeIdHolder<T>>) - Method in class org.lexgrid.loader.writer.AbstractCodingSchemeIdHolderWriter
 
write(List<? extends ParentIdHolder<T>>) - Method in class org.lexgrid.loader.writer.AbstractParentIdHolderWriter
 
write(List<? extends CodingScheme>) - Method in class org.lexgrid.loader.writer.CodingSchemeWriter
 
write(List<? extends O>) - Method in class org.lexgrid.loader.writer.decorator.FieldTruncatingWriterDecorator
 
write(List<? extends List<? extends Object>>) - Method in class org.lexgrid.loader.writer.GenericListWriter
 
write(List<? extends List<T>>) - Method in class org.lexgrid.loader.writer.ListWriter
 
write(List<? extends I>) - Method in class org.lexgrid.loader.writer.NoopWriter
No-op Writer for writing to System.out -- useful for testing.
writeAssociationSourceTarget(AssociationWrapper, AssociationSource, AssociationTarget) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
writeAssociationSourceTarget(AssociationWrapper, AssociationSource, AssociationTarget) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
writeEntity(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.owlapi.OwlApi2LG
 
writeEntity(Entity) - Method in class edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl.ProtegeOwl2LG
 
WriteLockManager - Class in org.lexevs.registry
This class is used for managing write locks between multiple JVMs running in the same enviroment.
WriterClassifier - Class in org.lexgrid.loader.writer.classifier
The Class WriterClassifier.
WriterClassifier() - Constructor for class org.lexgrid.loader.writer.classifier.WriterClassifier
 

X

XML_BASE - Static variable in class org.lexgrid.exporter.owlrdf.LexRdfConstants
 
XML_ENCODING - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
XML_VERSION - Static variable in class edu.mayo.informatics.lexgrid.convert.directConversions.claml.ClaMLConstants
 
XML_XSD - Static variable in class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.PreferenceLoaderConstants
 
XmlContentWriter - Class in edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters
The Class AbstractXmlMessageBodyWriter.
XmlContentWriter() - Constructor for class edu.mayo.informatics.lexgrid.convert.exporters.xml.lgxml.formatters.XmlContentWriter
 
XMLDaoServiceAdaptor - Class in edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon
 
XMLDaoServiceAdaptor() - Constructor for class edu.mayo.informatics.lexgrid.convert.directConversions.LgXMLCommon.XMLDaoServiceAdaptor
constructor initializes all DAO services
XMLLoader - Class in org.LexGrid.LexBIG.gui.load
GUI that allows loading XML files into LexBIG.
XMLLoader(LB_GUI) - Constructor for class org.LexGrid.LexBIG.gui.load.XMLLoader
 
XMLLoaderPreferences - Class in org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences
Placeholder.
XMLLoaderPreferences() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.XMLLoaderPreferences
 
XMLLoaderPreferencesDescriptor - Class in org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors
Class XMLLoaderPreferencesDescriptor.
XMLLoaderPreferencesDescriptor() - Constructor for class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.descriptors.XMLLoaderPreferencesDescriptor
 
XMLPreferenceLoader - Class in edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders
Class to load XML loader preferences from an XML file
XMLPreferenceLoader(URI, boolean) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.XMLPreferenceLoader
Constructor for creating an XMLPreferenceLoader.
XMLPreferenceLoader(URI) - Constructor for class edu.mayo.informatics.lexgrid.convert.utility.loaderPreferences.loaders.XMLPreferenceLoader
Constructor for creating an XMLPreferenceLoader.
XmlRegistry - Class in org.lexevs.registry.service
This class stores and provides access to information about loaded and tagged terminologies.
XmlRegistry(SystemVariables) - Constructor for class org.lexevs.registry.service.XmlRegistry
Instantiates a new xml registry.
XmlRegistry(String) - Constructor for class org.lexevs.registry.service.XmlRegistry
Instantiates a new xml registry.
XmlRegistry.DBEntry - Class in org.lexevs.registry.service
The Class DBEntry.
XmlRegistry.HistoryEntry - Class in org.lexevs.registry.service
The Class HistoryEntry.

Z

zTest() - Method in class org.LexGrid.LexBIG.Utility.OrderingTestRunnerTest.Test
 

_

_assocToChildMap - Variable in class org.lexevs.dao.database.service.valuesets.LexEVSTreeItem
 
_m_cb - Variable in class org.lexevs.logging.SimpleEmailAppender
The _m_cb.
_m_evaluator - Variable in class org.lexevs.logging.SimpleEmailAppender
The _m_evaluator.
A B C D E F G H I J K L M N O P Q R S T U V W X Z _ 
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