Imports a file specified in the Open Biomedical Ontologies (OBO) format to
the LexBIG repository.
Example: java org.LexGrid.LexBIG.admin.LoadOBO
-in,--input <uri> URI or path specifying location of the source file
-v, --validate <int> Perform validation of the candidate
resource without loading data. If specified, the '-a' and '-t'
options are ignored. Supported levels of validation include:
0 = Verify document is valid
-a, --activate ActivateScheme on successful load; if unspecified the vocabulary is loaded but not activated
-t, --tag <id> An optional tag ID (e.g. 'PRODUCTION' or 'TEST') to assign.
-meta --meatadata input <uri> URI or path specifying location of the metadata source file.
metadata is applied to the code system and code system version being loaded.
-metav --validate metadata <int> Perform validation of the metadata source file
without loading data. Supported levels of validation include:
0 = Verify document is valid.
metadata is validated against the code system and code system version being loaded.
-metao, --overwrite If specified, existing metadata for the code system
will be erased. Otherwise, new metadata will be appended to
existing metadata (if present).
-metaf,--force Force overwrite (no confirmation).
Example: java -Xmx512m -cp lgRuntime.jar
org.LexGrid.LexBIG.admin.LoadOBO -in "file:///path/to/file.obo" -a
-or-
org.LexGrid.LexBIG.admin.LoadOBO -in "file:///path/to/file.obo" -v 0
-or-
org.LexGrid.LexBIG.admin.LoadOBO -in "file:///path/to/file.obo" -a -meta "file:///path/to/metadata.xml" -metao