Serialized Form
Package gov.nih.nci.caarray.external.v1_0 |
serialVersionUID: 1L
id
java.lang.String id
serialVersionUID: 1L
id
java.lang.String id
Package gov.nih.nci.caarray.external.v1_0.array |
serialVersionUID: 1L
name
java.lang.String name
lsid
java.lang.String lsid
version
java.lang.String version
arrayProvider
ArrayProvider arrayProvider
technologyType
Term technologyType
organism
Organism organism
assayTypes
java.util.Set<E> assayTypes
files
java.util.Set<E> files
serialVersionUID: 1L
name
java.lang.String name
serialVersionUID: 1L
name
java.lang.String name
Package gov.nih.nci.caarray.external.v1_0.data |
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
name
java.lang.String name
version
java.lang.String version
quantitationTypes
java.util.Set<E> quantitationTypes
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
designElements
java.util.List<E> designElements
datas
java.util.List<E> datas
quantitationTypes
java.util.List<E> quantitationTypes
serialVersionUID: 1L
name
java.lang.String name
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
metadata
FileMetadata metadata
serialVersionUID: 1L
metadata
FileMetadata metadata
contents
byte[] contents
compressed
boolean compressed
serialVersionUID: 1L
compressedSize
long compressedSize
uncompressedSize
long uncompressedSize
name
java.lang.String name
fileType
FileType fileType
serialVersionUID: 1L
metadata
FileMetadata metadata
contentStream
com.healthmarketscience.rmiio.RemoteInputStream contentStream
compressed
boolean compressed
serialVersionUID: 1L
name
java.lang.String name
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
dataColumns
java.util.List<E> dataColumns
hybridization
Hybridization hybridization
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
idf
FileContents idf
sdrf
FileContents sdrf
dataFiles
java.util.Set<E> dataFiles
serialVersionUID: 1L
name
java.lang.String name
dataType
DataType dataType
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
serialVersionUID: 1L
readExternal
public void readExternal(java.io.ObjectInput oi)
throws java.io.IOException,
java.lang.ClassNotFoundException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
writeExternal
public void writeExternal(java.io.ObjectOutput oo)
throws java.io.IOException
- Optimizes the serialized form of this class by compressing the values array.
- Throws:
java.io.IOException
Package gov.nih.nci.caarray.external.v1_0.experiment |
serialVersionUID: 1L
publicIdentifier
java.lang.String publicIdentifier
title
java.lang.String title
description
java.lang.String description
organism
Organism organism
contacts
java.util.Set<E> contacts
experimentalDesigns
java.util.Set<E> experimentalDesigns
replicateTypes
java.util.Set<E> replicateTypes
normalizationTypes
java.util.Set<E> normalizationTypes
qualityControlTypes
java.util.Set<E> qualityControlTypes
arrayProvider
ArrayProvider arrayProvider
assayTypes
java.util.Set<E> assayTypes
factors
java.util.Set<E> factors
arrayDesigns
java.util.Set<E> arrayDesigns
lastDataModificationDate
java.util.Date lastDataModificationDate
serialVersionUID: 1L
person
Person person
roles
java.util.Set<E> roles
serialVersionUID: 1L
commonName
java.lang.String commonName
scientificName
java.lang.String scientificName
serialVersionUID: 1L
firstName
java.lang.String firstName
lastName
java.lang.String lastName
middleInitials
java.lang.String middleInitials
emailAddress
java.lang.String emailAddress
Package gov.nih.nci.caarray.external.v1_0.factor |
serialVersionUID: 1L
name
java.lang.String name
description
java.lang.String description
type
Term type
serialVersionUID: 1L
factor
Factor factor
value
AbstractValue value
Package gov.nih.nci.caarray.external.v1_0.query |
serialVersionUID: 1L
value
java.lang.String value
category
CaArrayEntityReference category
serialVersionUID: 1L
experimentGraphNodes
java.util.List<E> experimentGraphNodes
categories
java.util.List<E> categories
serialVersionUID: 1L
types
java.util.Set<E> types
serialVersionUID: 1L
experiment
CaArrayEntityReference experiment
names
java.util.Set<E> names
externalIds
java.util.Set<E> externalIds
annotationCriterions
java.util.Set<E> annotationCriterions
types
java.util.Set<E> types
serialVersionUID: 1L
quantitationTypes
java.util.Set<E> quantitationTypes
dataFiles
java.util.Set<E> dataFiles
hybridizations
java.util.Set<E> hybridizations
serialVersionUID: 1L
example
AbstractCaArrayEntity example
matchMode
MatchMode matchMode
excludeNulls
boolean excludeNulls
excludeZeroes
boolean excludeZeroes
serialVersionUID: 1L
title
java.lang.String title
publicIdentifier
java.lang.String publicIdentifier
organism
CaArrayEntityReference organism
arrayProvider
CaArrayEntityReference arrayProvider
assayType
CaArrayEntityReference assayType
principalInvestigators
java.util.Set<E> principalInvestigators
annotationCriterions
java.util.Set<E> annotationCriterions
serialVersionUID: 1L
experiment
CaArrayEntityReference experiment
extension
java.lang.String extension
types
java.util.Set<E> types
categories
java.util.Set<E> categories
experimentGraphNodes
java.util.Set<E> experimentGraphNodes
serialVersionUID: 1L
experiment
CaArrayEntityReference experiment
names
java.util.Set<E> names
biomaterials
java.util.Set<E> biomaterials
serialVersionUID: 1L
keyword
java.lang.String keyword
serialVersionUID: 1L
limit
int limit
offset
int offset
serialVersionUID: 1L
fileTypes
java.util.Set<E> fileTypes
fileCategories
java.util.Set<E> fileCategories
arrayDataTypes
java.util.Set<E> arrayDataTypes
hybridization
CaArrayEntityReference hybridization
serialVersionUID: 1L
results
java.util.List<E> results
maxAllowedResults
int maxAllowedResults
firstResultOffset
int firstResultOffset
Package gov.nih.nci.caarray.external.v1_0.sample |
serialVersionUID: 1L
name
java.lang.String name
experiment
CaArrayEntityReference experiment
serialVersionUID: 1L
node
AbstractExperimentGraphNode node
valueSets
java.util.List<E> valueSets
serialVersionUID: 1L
categories
java.util.List<E> categories
columns
java.util.List<E> columns
serialVersionUID: 1L
values
java.util.Set<E> values
category
Category category
serialVersionUID: 1L
description
java.lang.String description
externalId
java.lang.String externalId
diseaseState
TermValue diseaseState
tissueSite
TermValue tissueSite
materialType
TermValue materialType
cellType
TermValue cellType
organism
Organism organism
characteristics
java.util.Set<E> characteristics
type
BiomaterialType type
lastModifiedDataTime
java.util.Date lastModifiedDataTime
serialVersionUID: 1L
category
Category category
value
AbstractValue value
serialVersionUID: 1L
factorValues
java.util.Set<E> factorValues
arrayDesign
ArrayDesign arrayDesign
Package gov.nih.nci.caarray.external.v1_0.value |
serialVersionUID: 1L
unit
Term unit
serialVersionUID: 1L
measurement
java.lang.Float measurement
serialVersionUID: 1L
term
Term term
serialVersionUID: 1L
value
java.lang.String value
Package gov.nih.nci.caarray.external.v1_0.vocabulary |
serialVersionUID: 1L
name
java.lang.String name
accession
java.lang.String accession
url
java.lang.String url
termSource
TermSource termSource
serialVersionUID: 1L
accession
java.lang.String accession
url
java.lang.String url
termSource
TermSource termSource
value
java.lang.String value
serialVersionUID: 1L
name
java.lang.String name
version
java.lang.String version
url
java.lang.String url
Package gov.nih.nci.caarray.services |
Class gov.nih.nci.caarray.services.EntityPruner.MaxCollectionSizeExceeededException extends java.lang.Exception implements Serializable |
serialVersionUID: 1L
serialVersionUID: 4865588860956168307L
Package gov.nih.nci.caarray.services.external.v1_0 |
serialVersionUID: 1L
serialVersionUID: 1L
serialVersionUID: 1L
serialVersionUID: 1L
reference
CaArrayEntityReference reference
serialVersionUID: 1L
serialVersionUID: 1L
category
CaArrayEntityReference category
Package gov.nih.nci.caarray.services.external.v1_0.data |
serialVersionUID: 1L
serialVersionUID: 1L
Package gov.nih.nci.caarray.services.external.v1_0.grid.service.globus |
authorizationClassMap
java.util.Map<K,V> authorizationClassMap
Package gov.nih.nci.caarray.services.external.v1_0.search |
Class gov.nih.nci.caarray.services.external.v1_0.search.SearchApiUtils.WrapperException extends java.lang.RuntimeException implements Serializable |
serialVersionUID: 1L
Package gov.nih.nci.caarray.util |
serialVersionUID: 1L
hibernateHelper
com.fiveamsolutions.nci.commons.util.HibernateHelper hibernateHelper
processor
com.fiveamsolutions.nci.commons.audit.DefaultProcessor processor
dialect
org.hibernate.dialect.Dialect dialect
- For getting sequence numbers.
idGenerator
gov.nih.nci.caarray.util.CaArrayAuditLogInterceptor.TxIdGenerator idGenerator
serialVersionUID: 3689355407466181430L
label
java.lang.String label
- The property which supplies the option label visible to the end user.
value
java.lang.String value
- The property which supplies the value returned to the server.
serialVersionUID: -2556633166307295370L
Package gov.nih.nci.caarray.util.owlparser |
serialVersionUID: 1L
Package gov.nih.nci.cagrid.enumeration.service.globus |
authorizationClassMap
java.util.Map<K,V> authorizationClassMap