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Package Hierarchies:
gov.nih.nci.caarray.external.v1_0
,
gov.nih.nci.caarray.external.v1_0.array
,
gov.nih.nci.caarray.external.v1_0.data
,
gov.nih.nci.caarray.external.v1_0.experiment
,
gov.nih.nci.caarray.external.v1_0.factor
,
gov.nih.nci.caarray.external.v1_0.query
,
gov.nih.nci.caarray.external.v1_0.sample
,
gov.nih.nci.caarray.external.v1_0.value
,
gov.nih.nci.caarray.external.v1_0.vocabulary
,
gov.nih.nci.caarray.services
,
gov.nih.nci.caarray.services.external.v1_0
,
gov.nih.nci.caarray.services.external.v1_0.data
,
gov.nih.nci.caarray.services.external.v1_0.grid.client
,
gov.nih.nci.caarray.services.external.v1_0.grid.common
,
gov.nih.nci.caarray.services.external.v1_0.grid.service
,
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus
,
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.resource
,
gov.nih.nci.caarray.services.external.v1_0.impl
,
gov.nih.nci.caarray.services.external.v1_0.search
,
gov.nih.nci.caarray.util
,
gov.nih.nci.caarray.util.audit
,
gov.nih.nci.caarray.util.io
,
gov.nih.nci.caarray.util.io.logging
,
gov.nih.nci.caarray.util.owlparser
,
gov.nih.nci.cagrid.enumeration.client
,
gov.nih.nci.cagrid.enumeration.common
,
gov.nih.nci.cagrid.enumeration.service
,
gov.nih.nci.cagrid.enumeration.service.globus
Class Hierarchy
java.lang.Object
gov.nih.nci.caarray.util.audit.
AbstractAuditEntityHandler
<T>
gov.nih.nci.caarray.util.audit.
AccessProfileHandler
gov.nih.nci.caarray.util.audit.
ArrayDataHandler
gov.nih.nci.caarray.util.audit.
ArrayDesignHandler
gov.nih.nci.caarray.util.audit.
CaArrayFileHandler
gov.nih.nci.caarray.util.audit.
CollaboratorGroupHandler
gov.nih.nci.caarray.util.audit.
ExperimentHandler
gov.nih.nci.caarray.util.audit.
GroupHandler
gov.nih.nci.caarray.util.audit.
ProjectHandler
gov.nih.nci.caarray.util.audit.
ProtocolHandler
gov.nih.nci.caarray.util.audit.
TermHandler
gov.nih.nci.caarray.external.v1_0.
AbstractCaArrayEntity
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.sample.
AbstractExperimentGraphNode
gov.nih.nci.caarray.external.v1_0.sample.
Biomaterial
gov.nih.nci.caarray.external.v1_0.sample.
Hybridization
gov.nih.nci.caarray.external.v1_0.data.
ArrayDataType
gov.nih.nci.caarray.external.v1_0.array.
ArrayDesign
gov.nih.nci.caarray.external.v1_0.array.
ArrayProvider
gov.nih.nci.caarray.external.v1_0.array.
AssayType
gov.nih.nci.caarray.external.v1_0.vocabulary.
Category
gov.nih.nci.caarray.external.v1_0.experiment.
Experiment
gov.nih.nci.caarray.external.v1_0.experiment.
ExperimentalContact
gov.nih.nci.caarray.external.v1_0.factor.
Factor
gov.nih.nci.caarray.external.v1_0.data.
File
gov.nih.nci.caarray.external.v1_0.data.
FileType
gov.nih.nci.caarray.external.v1_0.experiment.
Person
gov.nih.nci.caarray.external.v1_0.data.
QuantitationType
gov.nih.nci.caarray.external.v1_0.vocabulary.
Term
gov.nih.nci.caarray.external.v1_0.experiment.
Organism
gov.nih.nci.caarray.external.v1_0.vocabulary.
TermSource
gov.nih.nci.caarray.services.
AbstractCaArrayServer
gov.nih.nci.caarray.services.
CaArrayServer
gov.nih.nci.caarray.services.external.v1_0.
CaArrayServer
gov.nih.nci.caarray.services.external.v1_0.data.AbstractDataApiUtils (implements gov.nih.nci.caarray.services.external.v1_0.data.DataApiUtils)
gov.nih.nci.caarray.services.external.v1_0.grid.client.
GridDataApiUtils
gov.nih.nci.caarray.external.v1_0.data.
AbstractDataColumn
(implements java.io.Externalizable)
gov.nih.nci.caarray.external.v1_0.data.
BooleanColumn
gov.nih.nci.caarray.external.v1_0.data.
DoubleColumn
gov.nih.nci.caarray.external.v1_0.data.
FloatColumn
gov.nih.nci.caarray.external.v1_0.data.
IntegerColumn
gov.nih.nci.caarray.external.v1_0.data.
LongColumn
gov.nih.nci.caarray.external.v1_0.data.
ShortColumn
gov.nih.nci.caarray.external.v1_0.data.
StringColumn
gov.nih.nci.caarray.services.external.AbstractExternalService
gov.nih.nci.caarray.services.external.v1_0.impl.
BaseV1_0ExternalService
com.google.inject.AbstractModule (implements com.google.inject.Module)
gov.nih.nci.caarray.util.
CaArrayHibernateHelperModule
gov.nih.nci.caarray.util.
UsernameHolderModule
gov.nih.nci.caarray.util.owlparser.
AbstractOntologyOwlParser
gov.nih.nci.caarray.util.owlparser.
SqlOntologyOwlParser
gov.nih.nci.caarray.services.external.v1_0.search.AbstractSearchApiUtils (implements gov.nih.nci.caarray.services.external.v1_0.search.SearchApiUtils)
gov.nih.nci.caarray.services.external.v1_0.grid.client.
GridSearchApiUtils
(implements gov.nih.nci.caarray.services.external.v1_0.search.SearchApiUtils)
gov.nih.nci.caarray.external.v1_0.value.
AbstractValue
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.value.
MeasurementValue
gov.nih.nci.caarray.external.v1_0.value.
TermValue
gov.nih.nci.caarray.external.v1_0.value.
UserDefinedValue
gov.nih.nci.caarray.external.v1_0.sample.
AnnotationColumn
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
AnnotationCriterion
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.sample.
AnnotationSet
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
AnnotationSetRequest
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.sample.
AnnotationValueSet
(implements java.io.Serializable)
gov.nih.nci.caarray.services.external.v1_0.impl.
BaseV1_0ExternalService.EntityHandlerRegistry
gov.nih.nci.caarray.external.v1_0.query.
BiomaterialSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.
CaArrayEntityReference
(implements java.io.Serializable)
gov.nih.nci.caarray.util.
CaArrayHibernateHelperFactory
gov.nih.nci.caarray.util.
CaArrayHibernateHelperUnsupportedOperationImpl
(implements gov.nih.nci.caarray.util.
CaArrayHibernateHelper
)
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.
CaArraySvc_v1_0Authorization
(implements org.globus.wsrf.security.authorization.PDP)
gov.nih.nci.caarray.services.external.v1_0.grid.service.
CaArraySvc_v1_0Configuration
gov.nih.nci.caarray.services.external.v1_0.grid.service.
CaArraySvc_v1_0ImplBase
gov.nih.nci.caarray.services.external.v1_0.grid.service.
CaArraySvc_v1_0Impl
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.
CaArraySvc_v1_0ProviderImpl
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.resource.
CaArraySvc_v1_0ResourceConfiguration
gov.nih.nci.caarray.util.
CaArrayUtils
gov.nih.nci.cagrid.enumeration.service.globus.
CaGridEnumerationAuthorization
(implements org.globus.wsrf.security.authorization.PDP)
gov.nih.nci.cagrid.enumeration.service.
CaGridEnumerationImplBase
gov.nih.nci.cagrid.enumeration.service.
CaGridEnumerationImpl
gov.nih.nci.cagrid.enumeration.service.globus.
CaGridEnumerationProviderImpl
gov.nih.nci.caarray.external.v1_0.sample.
Characteristic
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.data.
DataSet
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
DataSetRequest
(implements java.io.Serializable)
com.fiveamsolutions.nci.commons.audit.DefaultProcessor
gov.nih.nci.caarray.util.
CaArrayAuditLogProcessor
gov.nih.nci.caarray.external.v1_0.data.
DesignElement
(implements java.io.Serializable)
org.hibernate.dialect.Dialect
org.hibernate.dialect.MySQLDialect
org.hibernate.dialect.MySQLInnoDBDialect
gov.nih.nci.caarray.util.
CaarrayInnoDBDialect
gov.nih.nci.caarray.util.
EmailUtil
org.hibernate.EmptyInterceptor (implements org.hibernate.Interceptor, java.io.Serializable)
com.fiveamsolutions.nci.commons.audit.AuditLogInterceptor
gov.nih.nci.caarray.util.
CaArrayAuditLogInterceptor
gov.nih.nci.caarray.external.v1_0.query.
ExampleSearchCriteria
<T> (implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
ExperimentSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.factor.
FactorValue
(implements java.io.Serializable)
org.exolab.castor.mapping.loader.FieldHandlerFriend (implements org.exolab.castor.mapping.FieldHandler)
org.exolab.castor.mapping.ExtendedFieldHandler
org.exolab.castor.mapping.AbstractFieldHandler
org.exolab.castor.mapping.GeneralizedFieldHandler
gov.nih.nci.caarray.services.grid.util.EnumFieldHandler<T>
gov.nih.nci.caarray.services.external.v1_0.grid.common.
BiomaterialTypeFieldHandler
gov.nih.nci.caarray.services.external.v1_0.grid.common.
DataTypeFieldHandler
gov.nih.nci.caarray.services.external.v1_0.grid.common.
FileCategoryFieldHandler
gov.nih.nci.caarray.services.external.v1_0.grid.common.
MatchModeFieldHandler
gov.nih.nci.caarray.external.v1_0.data.
FileContents
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.data.
FileMetadata
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
FileSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.data.
FileStreamableContents
(implements java.io.Serializable)
gov.nih.nci.caarray.util.io.
FileUtility
gov.nih.nci.caarray.services.external.v1_0.grid.client.
GridApiUtils
com.fiveamsolutions.nci.commons.util.HibernateHelper
com.fiveamsolutions.nci.commons.util.CsmEnabledHibernateHelper
gov.nih.nci.caarray.util.
CaArrayHibernateHelperImpl
(implements gov.nih.nci.caarray.util.
CaArrayHibernateHelper
)
gov.nih.nci.caarray.external.v1_0.data.
HybridizationData
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
HybridizationSearchCriteria
(implements java.io.Serializable)
org.hibernate.cfg.ImprovedNamingStrategy (implements org.hibernate.cfg.NamingStrategy, java.io.Serializable)
gov.nih.nci.caarray.util.
NamingStrategy
gov.nih.nci.caarray.external.v1_0.query.
KeywordSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
BiomaterialKeywordSearchCriteria
gov.nih.nci.caarray.util.
LabelValue
(implements java.lang.Comparable<T>, java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.query.
LimitOffset
(implements java.io.Serializable)
gov.nih.nci.caarray.util.io.logging.
LogUtil
gov.nih.nci.caarray.external.v1_0.data.
MageTabFileSet
(implements java.io.Serializable)
gov.nih.nci.caarray.util.owlparser.
ParseMgedOntology
gov.nih.nci.caarray.util.
PropertyAccessor
gov.nih.nci.caarray.external.v1_0.query.
QuantitationTypeSearchCriteria
(implements java.io.Serializable)
gov.nih.nci.caarray.util.
ReflectionHelper
ReflectionResource
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.resource.
CaArraySvc_v1_0ResourceBase
(implements org.globus.wsrf.Resource)
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.resource.
CaArraySvc_v1_0Resource
gov.nih.nci.caarray.util.
ReflectionUtils
gov.nih.nci.caarray.services.external.v1_0.grid.service.
SearchEnumIterator
<T> (implements org.globus.ws.enumeration.EnumIterator)
gov.nih.nci.caarray.external.v1_0.query.
SearchResult
<T> (implements java.io.Serializable)
ServiceSecurityClient
gov.nih.nci.caarray.services.external.v1_0.grid.client.
CaArraySvc_v1_0ClientBase
gov.nih.nci.caarray.services.external.v1_0.grid.client.
CaArraySvc_v1_0Client
(implements gov.nih.nci.caarray.services.external.v1_0.grid.common.
CaArraySvc_v1_0I
)
ServiceSecurityClient
gov.nih.nci.cagrid.enumeration.client.
CaGridEnumerationClientBase
gov.nih.nci.cagrid.enumeration.client.
CaGridEnumerationClient
(implements gov.nih.nci.cagrid.enumeration.common.
CaGridEnumerationI
)
SingletonResourceHomeImpl
gov.nih.nci.caarray.services.external.v1_0.grid.service.globus.resource.
CaArraySvc_v1_0ResourceHome
(implements org.globus.wsrf.jndi.Initializable)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
gov.nih.nci.caarray.services.external.v1_0.
ApiException
gov.nih.nci.caarray.services.external.v1_0.data.
DataTransferException
gov.nih.nci.caarray.services.external.v1_0.data.
InconsistentDataSetsException
gov.nih.nci.caarray.services.external.v1_0.
InvalidInputException
gov.nih.nci.caarray.services.external.v1_0.
InvalidReferenceException
gov.nih.nci.caarray.services.external.v1_0.
IncorrectEntityTypeException
gov.nih.nci.caarray.services.external.v1_0.
NoEntityMatchingReferenceException
gov.nih.nci.caarray.services.external.v1_0.
UnsupportedCategoryException
gov.nih.nci.caarray.util.owlparser.
ParseException
gov.nih.nci.caarray.services.
ServerConnectionException
gov.nih.nci.caarray.util.
URIUserType
(implements org.hibernate.usertype.UserType)
com.fiveamsolutions.nci.commons.util.UsernameHolder
gov.nih.nci.caarray.util.
CaArrayUsernameHolder
gov.nih.nci.caarray.util.
UsernameHolderImpl
(implements gov.nih.nci.caarray.util.
UsernameHolder
)
Interface Hierarchy
gov.nih.nci.caarray.services.external.v1_0.impl.
BaseV1_0ExternalService.EntityHandler
<T>
gov.nih.nci.caarray.util.
CaArrayHibernateHelper
gov.nih.nci.caarray.services.external.v1_0.grid.common.
CaArraySvc_v1_0ConstantsBase
gov.nih.nci.caarray.services.external.v1_0.grid.common.
CaArraySvc_v1_0Constants
gov.nih.nci.caarray.services.external.v1_0.grid.common.
CaArraySvc_v1_0I
gov.nih.nci.cagrid.enumeration.common.
CaGridEnumerationConstantsBase
gov.nih.nci.cagrid.enumeration.common.
CaGridEnumerationConstants
gov.nih.nci.cagrid.enumeration.common.
CaGridEnumerationI
gov.nih.nci.caarray.services.external.v1_0.data.
DataService
gov.nih.nci.caarray.services.external.v1_0.search.
SearchService
gov.nih.nci.caarray.util.
UnfilteredCallback
gov.nih.nci.caarray.util.
UsernameHolder
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
gov.nih.nci.caarray.external.v1_0.data.
FileCategory
gov.nih.nci.caarray.external.v1_0.data.
DataType
gov.nih.nci.caarray.external.v1_0.query.
MatchMode
gov.nih.nci.caarray.external.v1_0.sample.
BiomaterialType
Overview
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