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public interface CaArraySvc_v1_0I
This class is autogenerated, DO NOT EDIT. This interface represents the API which is accessable on the grid service from the client.
Method Summary | |
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateBiomaterials(BiomaterialSearchCriteria criteria)
|
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria)
|
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateByExample(ExampleSearchCriteria criteria)
|
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateExperiments(ExperimentSearchCriteria experimentSearchCriteria)
Begin an enumeration of experiments matching given criteria |
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateExperimentsByKeyword(KeywordSearchCriteria criteria)
|
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateFiles(FileSearchCriteria criteria)
|
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateHybridizations(HybridizationSearchCriteria criteria)
|
Category[] |
getAllCharacteristicCategories(CaArrayEntityReference experimentRef)
|
Person[] |
getAllPrincipalInvestigators()
return list of all persons who are principal investigators for some experiment |
AnnotationSet |
getAnnotationSet(AnnotationSetRequest request)
|
DataSet |
getDataSet(DataSetRequest dataSetRequest)
Retrieves a parsed data set |
org.cagrid.transfer.context.stubs.types.TransferServiceContextReference |
getFileContentsTransfer(CaArrayEntityReference fileRef,
boolean compress)
Returns a grid transfer reference for retrieving the given reference |
MageTabFileSet |
getMageTabExport(CaArrayEntityReference experimentRef)
Returns an export of an experiment as a set of mage-tab IDF and SDRF, along with metadata for associated data files |
org.oasis.wsrf.properties.GetMultipleResourcePropertiesResponse |
getMultipleResourceProperties(org.oasis.wsrf.properties.GetMultipleResourceProperties_Element params)
|
org.oasis.wsrf.properties.GetResourcePropertyResponse |
getResourceProperty(javax.xml.namespace.QName params)
|
Term[] |
getTermsForCategory(CaArrayEntityReference categoryRef,
java.lang.String valuePrefix)
|
org.oasis.wsrf.properties.QueryResourcePropertiesResponse |
queryResourceProperties(org.oasis.wsrf.properties.QueryResourceProperties_Element params)
|
SearchResult |
searchByExample(ExampleSearchCriteria criteria,
LimitOffset limitOffset)
Search using an entity as example |
SearchResult |
searchForBiomaterials(BiomaterialSearchCriteria criteria,
LimitOffset limitOffset)
search for biomaterials matching criteria |
SearchResult |
searchForBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria,
LimitOffset limitOffset)
Search for biomaterials matching given keyword |
SearchResult |
searchForExperiments(ExperimentSearchCriteria criteria,
LimitOffset limitOffset)
Search for experiments matching given criteria |
SearchResult |
searchForExperimentsByKeyword(KeywordSearchCriteria criteria,
LimitOffset limitOffset)
Searches for experiments using a keyword search across fields |
SearchResult |
searchForFiles(FileSearchCriteria criteria,
LimitOffset limitOffset)
Search for files matching given criteria |
SearchResult |
searchForHybridizations(HybridizationSearchCriteria criteria,
LimitOffset limitOffset)
search for hybridizations matching criteria |
QuantitationType[] |
searchForQuantitationTypes(QuantitationTypeSearchCriteria criteria)
Search for quantitation types matching criteria |
Method Detail |
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SearchResult searchForExperiments(ExperimentSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
criteria
- limitOffset
-
UnsupportedCategoryFault
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
Person[] getAllPrincipalInvestigators() throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperiments(ExperimentSearchCriteria experimentSearchCriteria) throws java.rmi.RemoteException
experimentSearchCriteria
-
java.rmi.RemoteException
org.cagrid.transfer.context.stubs.types.TransferServiceContextReference getFileContentsTransfer(CaArrayEntityReference fileRef, boolean compress) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
fileRef
- compress
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
DataStagingFault
java.rmi.RemoteException
DataSet getDataSet(DataSetRequest dataSetRequest) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.InconsistentDataSetsFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
dataSetRequest
- a DataSetRequest identifying the parsed data to be retrieved. The request must specify at least one hybridization or one file, and at least one quantitation type
InconsistentDataSetsFault
- if the data sets for the hybridizations and/or files in the request are not consistent, e.g. do not correspond to the same design element list.
NoEntityMatchingReferenceFault
- if any of the hybridization, file or quantitation references in the dataSetRequest are not valid
IncorrectEntityTypeFault
- if any of the hybridization, file or quantitation references in the dataSetRequest are not valid
java.rmi.RemoteException
SearchResult searchForBiomaterials(BiomaterialSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault
criteria
- limitOffset
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
UnsupportedCategoryFault
java.rmi.RemoteException
SearchResult searchForHybridizations(HybridizationSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
criteria
- limitOffset
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
SearchResult searchForExperimentsByKeyword(KeywordSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
criteria
- limitOffset
-
java.rmi.RemoteException
SearchResult searchForFiles(FileSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
criteria
- limitOffset
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
SearchResult searchForBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
criteria
- limitOffset
-
java.rmi.RemoteException
MageTabFileSet getMageTabExport(CaArrayEntityReference experimentRef) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
experimentRef
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
DataStagingFault
java.rmi.RemoteException
QuantitationType[] searchForQuantitationTypes(QuantitationTypeSearchCriteria criteria) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
criteria
-
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
SearchResult searchByExample(ExampleSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
criteria
- limitOffset
-
java.rmi.RemoteException
AnnotationSet getAnnotationSet(AnnotationSetRequest request) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
Term[] getTermsForCategory(CaArrayEntityReference categoryRef, java.lang.String valuePrefix) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
Category[] getAllCharacteristicCategories(CaArrayEntityReference experimentRef) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperimentsByKeyword(KeywordSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterials(BiomaterialSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateHybridizations(HybridizationSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateFiles(FileSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateByExample(ExampleSearchCriteria criteria) throws java.rmi.RemoteException
java.rmi.RemoteException
org.oasis.wsrf.properties.GetMultipleResourcePropertiesResponse getMultipleResourceProperties(org.oasis.wsrf.properties.GetMultipleResourceProperties_Element params) throws java.rmi.RemoteException
java.rmi.RemoteException
org.oasis.wsrf.properties.GetResourcePropertyResponse getResourceProperty(javax.xml.namespace.QName params) throws java.rmi.RemoteException
java.rmi.RemoteException
org.oasis.wsrf.properties.QueryResourcePropertiesResponse queryResourceProperties(org.oasis.wsrf.properties.QueryResourceProperties_Element params) throws java.rmi.RemoteException
java.rmi.RemoteException
|
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