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java.lang.ObjectServiceSecurityClient
gov.nih.nci.caarray.services.external.v1_0.grid.client.CaArraySvc_v1_0ClientBase
gov.nih.nci.caarray.services.external.v1_0.grid.client.CaArraySvc_v1_0Client
public class CaArraySvc_v1_0Client
This class is autogenerated, DO NOT EDIT GENERATED GRID SERVICE ACCESS METHODS. This client is generated automatically by Introduce to provide a clean unwrapped API to the service. On construction the class instance will contact the remote service and retrieve it's security metadata description which it will use to configure the Stub specifically for each method call.
Field Summary |
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Fields inherited from class gov.nih.nci.caarray.services.external.v1_0.grid.client.CaArraySvc_v1_0ClientBase |
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consumer, consumerEPR, portType, portTypeMutex |
Constructor Summary | |
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CaArraySvc_v1_0Client(org.apache.axis.message.addressing.EndpointReferenceType epr)
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CaArraySvc_v1_0Client(org.apache.axis.message.addressing.EndpointReferenceType epr,
org.globus.gsi.GlobusCredential proxy)
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CaArraySvc_v1_0Client(java.lang.String url)
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CaArraySvc_v1_0Client(java.lang.String url,
org.globus.gsi.GlobusCredential proxy)
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Method Summary | |
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateBiomaterials(BiomaterialSearchCriteria criteria)
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria)
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateByExample(ExampleSearchCriteria criteria)
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateExperiments(ExperimentSearchCriteria experimentSearchCriteria)
Begin an enumeration of experiments matching given criteria |
gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateExperimentsByKeyword(KeywordSearchCriteria criteria)
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateFiles(FileSearchCriteria criteria)
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gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer |
enumerateHybridizations(HybridizationSearchCriteria criteria)
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Category[] |
getAllCharacteristicCategories(CaArrayEntityReference experimentRef)
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Person[] |
getAllPrincipalInvestigators()
return list of all persons who are principal investigators for some experiment |
AnnotationSet |
getAnnotationSet(AnnotationSetRequest request)
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DataSet |
getDataSet(DataSetRequest dataSetRequest)
Retrieves a parsed data set |
org.cagrid.transfer.context.stubs.types.TransferServiceContextReference |
getFileContentsTransfer(CaArrayEntityReference fileRef,
boolean compress)
Returns a grid transfer reference for retrieving the given reference |
MageTabFileSet |
getMageTabExport(CaArrayEntityReference experimentRef)
Returns an export of an experiment as a set of mage-tab IDF and SDRF, along with metadata for associated data files |
org.oasis.wsrf.properties.GetMultipleResourcePropertiesResponse |
getMultipleResourceProperties(org.oasis.wsrf.properties.GetMultipleResourceProperties_Element params)
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org.oasis.wsrf.properties.GetResourcePropertyResponse |
getResourceProperty(javax.xml.namespace.QName params)
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Term[] |
getTermsForCategory(CaArrayEntityReference categoryRef,
java.lang.String valuePrefix)
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static void |
main(java.lang.String[] args)
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org.oasis.wsrf.properties.QueryResourcePropertiesResponse |
queryResourceProperties(org.oasis.wsrf.properties.QueryResourceProperties_Element params)
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SearchResult |
searchByExample(ExampleSearchCriteria criteria,
LimitOffset limitOffset)
Search using an entity as example |
SearchResult |
searchForBiomaterials(BiomaterialSearchCriteria criteria,
LimitOffset limitOffset)
search for biomaterials matching criteria |
SearchResult |
searchForBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria,
LimitOffset limitOffset)
Search for biomaterials matching given keyword |
SearchResult |
searchForExperiments(ExperimentSearchCriteria criteria,
LimitOffset limitOffset)
Search for experiments matching given criteria |
SearchResult |
searchForExperimentsByKeyword(KeywordSearchCriteria criteria,
LimitOffset limitOffset)
Searches for experiments using a keyword search across fields |
SearchResult |
searchForFiles(FileSearchCriteria criteria,
LimitOffset limitOffset)
Search for files matching given criteria |
SearchResult |
searchForHybridizations(HybridizationSearchCriteria criteria,
LimitOffset limitOffset)
search for hybridizations matching criteria |
QuantitationType[] |
searchForQuantitationTypes(QuantitationTypeSearchCriteria criteria)
Search for quantitation types matching criteria |
static void |
usage()
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Methods inherited from class gov.nih.nci.caarray.services.external.v1_0.grid.client.CaArraySvc_v1_0ClientBase |
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createPortType, getConnectionTimeout, initialize, setConnectionTimeout |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public CaArraySvc_v1_0Client(java.lang.String url) throws org.apache.axis.types.URI.MalformedURIException, java.rmi.RemoteException
org.apache.axis.types.URI.MalformedURIException
java.rmi.RemoteException
public CaArraySvc_v1_0Client(java.lang.String url, org.globus.gsi.GlobusCredential proxy) throws org.apache.axis.types.URI.MalformedURIException, java.rmi.RemoteException
org.apache.axis.types.URI.MalformedURIException
java.rmi.RemoteException
public CaArraySvc_v1_0Client(org.apache.axis.message.addressing.EndpointReferenceType epr) throws org.apache.axis.types.URI.MalformedURIException, java.rmi.RemoteException
org.apache.axis.types.URI.MalformedURIException
java.rmi.RemoteException
public CaArraySvc_v1_0Client(org.apache.axis.message.addressing.EndpointReferenceType epr, org.globus.gsi.GlobusCredential proxy) throws org.apache.axis.types.URI.MalformedURIException, java.rmi.RemoteException
org.apache.axis.types.URI.MalformedURIException
java.rmi.RemoteException
Method Detail |
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public static void usage()
public static void main(java.lang.String[] args)
public SearchResult searchForExperiments(ExperimentSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
CaArraySvc_v1_0I
searchForExperiments
in interface CaArraySvc_v1_0I
UnsupportedCategoryFault
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
public Person[] getAllPrincipalInvestigators() throws java.rmi.RemoteException
CaArraySvc_v1_0I
getAllPrincipalInvestigators
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperiments(ExperimentSearchCriteria experimentSearchCriteria) throws java.rmi.RemoteException
CaArraySvc_v1_0I
enumerateExperiments
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public org.cagrid.transfer.context.stubs.types.TransferServiceContextReference getFileContentsTransfer(CaArrayEntityReference fileRef, boolean compress) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
CaArraySvc_v1_0I
getFileContentsTransfer
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
DataStagingFault
java.rmi.RemoteException
public DataSet getDataSet(DataSetRequest dataSetRequest) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.InconsistentDataSetsFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
CaArraySvc_v1_0I
getDataSet
in interface CaArraySvc_v1_0I
dataSetRequest
- a DataSetRequest identifying the parsed data to be retrieved. The request must specify at least one hybridization or one file, and at least one quantitation type
InconsistentDataSetsFault
- if the data sets for the hybridizations and/or files in the request are not consistent, e.g. do not correspond to the same design element list.
NoEntityMatchingReferenceFault
- if any of the hybridization, file or quantitation references in the dataSetRequest are not valid
IncorrectEntityTypeFault
- if any of the hybridization, file or quantitation references in the dataSetRequest are not valid
java.rmi.RemoteException
public SearchResult searchForBiomaterials(BiomaterialSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault
CaArraySvc_v1_0I
searchForBiomaterials
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
UnsupportedCategoryFault
java.rmi.RemoteException
public SearchResult searchForHybridizations(HybridizationSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
CaArraySvc_v1_0I
searchForHybridizations
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
public SearchResult searchForExperimentsByKeyword(KeywordSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
CaArraySvc_v1_0I
searchForExperimentsByKeyword
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public SearchResult searchForFiles(FileSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
CaArraySvc_v1_0I
searchForFiles
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
public SearchResult searchForBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
CaArraySvc_v1_0I
searchForBiomaterialsByKeyword
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public MageTabFileSet getMageTabExport(CaArrayEntityReference experimentRef) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
CaArraySvc_v1_0I
getMageTabExport
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
DataStagingFault
java.rmi.RemoteException
public QuantitationType[] searchForQuantitationTypes(QuantitationTypeSearchCriteria criteria) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
CaArraySvc_v1_0I
searchForQuantitationTypes
in interface CaArraySvc_v1_0I
IncorrectEntityTypeFault
NoEntityMatchingReferenceFault
java.rmi.RemoteException
public SearchResult searchByExample(ExampleSearchCriteria criteria, LimitOffset limitOffset) throws java.rmi.RemoteException
CaArraySvc_v1_0I
searchByExample
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public AnnotationSet getAnnotationSet(AnnotationSetRequest request) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getAnnotationSet
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
public Term[] getTermsForCategory(CaArrayEntityReference categoryRef, java.lang.String valuePrefix) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getTermsForCategory
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
public Category[] getAllCharacteristicCategories(CaArrayEntityReference experimentRef) throws java.rmi.RemoteException, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault, gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
getAllCharacteristicCategories
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperimentsByKeyword(KeywordSearchCriteria criteria) throws java.rmi.RemoteException
enumerateExperimentsByKeyword
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterials(BiomaterialSearchCriteria criteria) throws java.rmi.RemoteException
enumerateBiomaterials
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria) throws java.rmi.RemoteException
enumerateBiomaterialsByKeyword
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateHybridizations(HybridizationSearchCriteria criteria) throws java.rmi.RemoteException
enumerateHybridizations
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateFiles(FileSearchCriteria criteria) throws java.rmi.RemoteException
enumerateFiles
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateByExample(ExampleSearchCriteria criteria) throws java.rmi.RemoteException
enumerateByExample
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public org.oasis.wsrf.properties.GetMultipleResourcePropertiesResponse getMultipleResourceProperties(org.oasis.wsrf.properties.GetMultipleResourceProperties_Element params) throws java.rmi.RemoteException
getMultipleResourceProperties
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public org.oasis.wsrf.properties.GetResourcePropertyResponse getResourceProperty(javax.xml.namespace.QName params) throws java.rmi.RemoteException
getResourceProperty
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
public org.oasis.wsrf.properties.QueryResourcePropertiesResponse queryResourceProperties(org.oasis.wsrf.properties.QueryResourceProperties_Element params) throws java.rmi.RemoteException
queryResourceProperties
in interface CaArraySvc_v1_0I
java.rmi.RemoteException
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PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |