gov.nih.nci.caarray.services.external.v1_0.grid.service
Class CaArraySvc_v1_0Impl
java.lang.Object
gov.nih.nci.caarray.services.external.v1_0.grid.service.CaArraySvc_v1_0ImplBase
gov.nih.nci.caarray.services.external.v1_0.grid.service.CaArraySvc_v1_0Impl
public class CaArraySvc_v1_0Impl
- extends CaArraySvc_v1_0ImplBase
Implementation of the v1.0 of the CaArray grid service
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
CaArraySvc_v1_0Impl
public CaArraySvc_v1_0Impl()
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
getJndiUrl
public static java.lang.String getJndiUrl()
searchForExperiments
public SearchResult searchForExperiments(ExperimentSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getAllPrincipalInvestigators
public Person[] getAllPrincipalInvestigators()
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateExperiments
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperiments(ExperimentSearchCriteria experimentSearchCriteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
getFileContentsTransfer
public org.cagrid.transfer.context.stubs.types.TransferServiceContextReference getFileContentsTransfer(CaArrayEntityReference fileRef,
boolean compress)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
getDataSet
public DataSet getDataSet(DataSetRequest dataSetRequest)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.InconsistentDataSetsFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.InconsistentDataSetsFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
searchForExperimentsByKeyword
public SearchResult searchForExperimentsByKeyword(KeywordSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
searchForFiles
public SearchResult searchForFiles(FileSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
searchForBiomaterialsByKeyword
public SearchResult searchForBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
searchForBiomaterials
public SearchResult searchForBiomaterials(BiomaterialSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.UnsupportedCategoryFault
searchForHybridizations
public SearchResult searchForHybridizations(HybridizationSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getMageTabExport
public MageTabFileSet getMageTabExport(CaArrayEntityReference experimentRef)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.DataStagingFault
searchForQuantitationTypes
public QuantitationType[] searchForQuantitationTypes(QuantitationTypeSearchCriteria criteria)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
searchByExample
public SearchResult searchByExample(ExampleSearchCriteria criteria,
LimitOffset limitOffset)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
getAnnotationSet
public AnnotationSet getAnnotationSet(AnnotationSetRequest request)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getTermsForCategory
public Term[] getTermsForCategory(CaArrayEntityReference categoryRef,
java.lang.String valuePrefix)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
getAllCharacteristicCategories
public Category[] getAllCharacteristicCategories(CaArrayEntityReference experimentRef)
throws java.rmi.RemoteException,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault,
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
- Throws:
java.rmi.RemoteException
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.NoEntityMatchingReferenceFault
gov.nih.nci.caarray.services.external.v1_0.grid.stubs.types.IncorrectEntityTypeFault
enumerateExperimentsByKeyword
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateExperimentsByKeyword(KeywordSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateBiomaterials
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterials(BiomaterialSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateBiomaterialsByKeyword
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateBiomaterialsByKeyword(BiomaterialKeywordSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateHybridizations
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateHybridizations(HybridizationSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateFiles
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateFiles(FileSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException
enumerateByExample
public gov.nih.nci.cagrid.enumeration.stubs.response.EnumerationResponseContainer enumerateByExample(ExampleSearchCriteria criteria)
throws java.rmi.RemoteException
- Throws:
java.rmi.RemoteException