Serialized Form
Package edu.georgetown.pir |
serialVersionUID: 1L
id
java.lang.Long id
source
java.lang.String source
value
java.lang.String value
comment
java.lang.String comment
organismCollection
java.util.Set<E> organismCollection
serialVersionUID: 1L
id
java.lang.Long id
ncbiTaxonomyId
java.lang.Long ncbiTaxonomyId
scientificName
java.lang.String scientificName
commonName
java.lang.String commonName
taxonomyRank
java.lang.String taxonomyRank
ethnicityStrain
java.lang.String ethnicityStrain
termSource
TermSource termSource
additionalOrganismNameCollection
java.util.Set<E> additionalOrganismNameCollection
Package gov.nih.nci.caarray.domain |
serialVersionUID: 2732929116326299995L
lsidAuthority
java.lang.String lsidAuthority
lsidNamespace
java.lang.String lsidNamespace
lsidObjectId
java.lang.String lsidObjectId
serialVersionUID: 2732929116326299995L
id
java.lang.Long id
caBigId
java.lang.String caBigId
serialVersionUID: 1L
serialVersionUID: 1L
id
java.lang.Long id
contents
java.sql.Blob contents
serialVersionUID: 3343197687318404334L
authority
java.lang.String authority
namespace
java.lang.String namespace
objectId
java.lang.String objectId
serialVersionUID: -2527332971292994350L
id
java.lang.Long id
creationTimestamp
java.util.Date creationTimestamp
uncompressedSize
long uncompressedSize
compressedSize
long compressedSize
blobParts
java.util.List<E> blobParts
Package gov.nih.nci.caarray.domain.array |
annotation
AbstractProbeAnnotation annotation
name
java.lang.String name
serialVersionUID: 1L
databaseName
java.lang.String databaseName
accessionNumber
java.lang.String accessionNumber
serialVersionUID: 1234567890L
batch
java.lang.String batch
serialNumber
java.lang.String serialNumber
production
ProtocolApplication production
design
ArrayDesign design
arrayGroup
ArrayGroup arrayGroup
serialVersionUID: 1234567890L
name
java.lang.String name
description
java.lang.String description
assayTypes
java.util.SortedSet<E> assayTypes
printing
ProtocolApplication printing
polymerType
Term polymerType
numberOfFeatures
java.lang.Integer numberOfFeatures
substrateType
Term substrateType
surfaceType
Term surfaceType
technologyType
Term technologyType
organism
Organism organism
version
java.lang.String version
annotationFile
CaArrayFile annotationFile
designFiles
java.util.Set<E> designFiles
provider
Organization provider
designDetails
ArrayDesignDetails designDetails
geoAccession
java.lang.String geoAccession
serialVersionUID: -4810002388725364910L
features
java.util.Set<E> features
probeGroups
java.util.Set<E> probeGroups
probes
java.util.Set<E> probes
logicalProbes
java.util.Set<E> logicalProbes
serialVersionUID: 697901960168637674L
name
java.lang.String name
arrays
java.util.Set<E> arrays
serialVersionUID: 1L
start
java.lang.Long start
stop
java.lang.Long stop
strand
java.lang.String strand
uniprotId
java.lang.String uniprotId
exonArrayReporter
ExonArrayReporter exonArrayReporter
gene
Gene gene
serialVersionUID: 1L
gene
Gene gene
expressionArrayReporter
ExpressionArrayReporter expressionArrayReporter
chromosomeName
java.lang.String chromosomeName
chromosomeStartPosition
java.lang.Long chromosomeStartPosition
chromosomeEndPosition
java.lang.Long chromosomeEndPosition
serialVersionUID: -6319120292398781186L
blockColumn
short blockColumn
blockRow
short blockRow
column
short column
row
short row
featureNumber
java.lang.Integer featureNumber
x_Coordinate
java.lang.Double x_Coordinate
y_Coordinate
java.lang.Double y_Coordinate
coordinateUnits
Term coordinateUnits
arrayDesignDetails
ArrayDesignDetails arrayDesignDetails
serialVersionUID: 1L
fullName
java.lang.String fullName
symbol
java.lang.String symbol
genbankAccession
java.lang.String genbankAccession
genbankAccessionVersion
java.lang.String genbankAccessionVersion
ensemblgeneID
java.lang.String ensemblgeneID
unigeneclusterID
java.lang.String unigeneclusterID
entrezgeneID
java.lang.String entrezgeneID
refseqAccession
java.lang.String refseqAccession
thcAccession
java.lang.String thcAccession
additonalAccessions
java.util.Set<E> additonalAccessions
serialVersionUID: 4406463229622624441L
probes
java.util.Set<E> probes
arrayDesignDetails
ArrayDesignDetails arrayDesignDetails
serialVersionUID: 1L
accessions
java.util.Set<E> accessions
serialVersionUID: -7343503650075935784L
probeGroup
ProbeGroup probeGroup
features
java.util.Set<E> features
arrayDesignDetails
ArrayDesignDetails arrayDesignDetails
controlType
Term controlType
serialVersionUID: -7001732731586530134L
probes
java.util.Set<E> probes
name
java.lang.String name
arrayDesignDetails
ArrayDesignDetails arrayDesignDetails
serialVersionUID: 1L
dbSNPId
java.lang.String dbSNPId
dbSNPVersion
java.lang.Integer dbSNPVersion
alleleA
java.lang.String alleleA
alleleB
java.lang.String alleleB
chromosome
java.lang.Integer chromosome
physicalPosition
java.lang.Long physicalPosition
flank
java.lang.String flank
snpArrayReporter
SNPArrayReporter snpArrayReporter
Package gov.nih.nci.caarray.domain.contact |
serialVersionUID: 1234567890L
email
java.lang.String email
fax
java.lang.String fax
phone
java.lang.String phone
url
java.lang.String url
address
Address address
serialVersionUID: 1234567890L
street1
java.lang.String street1
street2
java.lang.String street2
city
java.lang.String city
state
java.lang.String state
zipCode
java.lang.String zipCode
serialVersionUID: 1234567890L
name
java.lang.String name
provider
boolean provider
serialVersionUID: 1234567890L
firstName
java.lang.String firstName
middleInitials
java.lang.String middleInitials
lastName
java.lang.String lastName
affiliations
java.util.Set<E> affiliations
Package gov.nih.nci.caarray.domain.country |
serialVersionUID: 3434506314749437341L
code
java.lang.String code
name
java.lang.String name
printableName
java.lang.String printableName
iso3
java.lang.String iso3
numcode
java.lang.String numcode
Package gov.nih.nci.caarray.domain.data |
serialVersionUID: 1234567890L
name
java.lang.String name
dataFile
CaArrayFile dataFile
type
ArrayDataType type
protocolApplications
java.util.Set<E> protocolApplications
dataSet
DataSet dataSet
hybridizations
java.util.Set<E> hybridizations
serialVersionUID: 1L
hybridizationData
HybridizationData hybridizationData
quantitationType
QuantitationType quantitationType
dataHandle
java.net.URI dataHandle
serialVersionUID: -192577620722459309L
name
java.lang.String name
version
java.lang.String version
quantitationTypes
java.util.Set<E> quantitationTypes
serialVersionUID: 1L
values
boolean[] values
serialVersionUID: 408918013610243473L
id
java.lang.Long id
designElements
java.util.List<E> designElements
hybridizations
java.util.List<E> hybridizations
quantitationTypes
java.util.List<E> quantitationTypes
serialVersionUID: 4430513886275629776L
arrayData
AbstractArrayData arrayData
hybridizationDataList
java.util.List<E> hybridizationDataList
quantitationTypes
java.util.List<E> quantitationTypes
designElementList
DesignElementList designElementList
serialVersionUID: 1234567890L
derivedFromArrayDataCollection
java.util.Set<E> derivedFromArrayDataCollection
serialVersionUID: 4430513886275629776L
designElementReferences
java.util.List<E> designElementReferences
designElements
java.util.List<E> designElements
designElementType
java.lang.String designElementType
serialVersionUID: 1L
designElement
AbstractDesignElement designElement
index
int index
designElementList
DesignElementList designElementList
id
java.lang.Long id
serialVersionUID: 1L
values
double[] values
serialVersionUID: 1L
values
float[] values
serialVersionUID: 8804648118447372387L
dataSet
DataSet dataSet
hybridization
Hybridization hybridization
labeledExtract
LabeledExtract labeledExtract
columns
java.util.List<E> columns
serialVersionUID: 1234567890L
name
java.lang.String name
protocolApplications
java.util.Set<E> protocolApplications
imageFile
CaArrayFile imageFile
hybridization
Hybridization hybridization
rawArrayData
RawArrayData rawArrayData
serialVersionUID: 1L
values
int[] values
serialVersionUID: 1L
values
long[] values
serialVersionUID: 7207891070185665511L
name
java.lang.String name
type
java.lang.String type
arrayDataTypes
java.util.Set<E> arrayDataTypes
serialVersionUID: 1234567890L
sourceImages
java.util.Set<E> sourceImages
serialVersionUID: 1L
values
short[] values
serialVersionUID: 1L
values
java.lang.String[] values
Package gov.nih.nci.caarray.domain.file |
serialVersionUID: 1234567890L
name
java.lang.String name
type
java.lang.String type
status
java.lang.String status
project
Project project
validationResult
gov.nih.nci.caarray.validation.FileValidationResult validationResult
uncompressedSize
long uncompressedSize
compressedSize
long compressedSize
partialSize
long partialSize
dataHandle
java.net.URI dataHandle
parent
CaArrayFile parent
children
java.util.Set<E> children
uniqueNameProject
java.lang.Boolean uniqueNameProject
serialVersionUID: -831461553674445009L
files
java.util.Set<E> files
projectId
java.lang.Long projectId
Package gov.nih.nci.caarray.domain.hybridization |
serialVersionUID: 1234567890L
name
java.lang.String name
description
java.lang.String description
amountOfMaterial
float amountOfMaterial
amountOfMaterialUnit
Term amountOfMaterialUnit
rawDataCollection
java.util.Set<E> rawDataCollection
array
Array array
images
java.util.Set<E> images
derivedDataCollection
java.util.Set<E> derivedDataCollection
protocolApplications
java.util.List<E> protocolApplications
labeledExtract
java.util.Set<E> labeledExtract
factorValues
java.util.Set<E> factorValues
experiment
Experiment experiment
hybridizationData
java.util.Set<E> hybridizationData
Package gov.nih.nci.caarray.domain.permissions |
serialVersionUID: -7994016784349522735L
id
java.lang.Long id
securityLevel
SecurityLevel securityLevel
sampleSecurityLevels
java.util.Map<K,V> sampleSecurityLevels
projectForPublicProfile
Project projectForPublicProfile
projectForGroupProfile
Project projectForGroupProfile
group
CollaboratorGroup group
serialVersionUID: -7566813289284832301L
id
java.lang.Long id
group
gov.nih.nci.security.authorization.domainobjects.Group group
owner
gov.nih.nci.security.authorization.domainobjects.User owner
accessProfiles
java.util.Set<E> accessProfiles
Package gov.nih.nci.caarray.domain.project |
serialVersionUID: 1L
serialVersionUID: 1234567890L
factor
Factor factor
hybridization
Hybridization hybridization
unit
Term unit
serialVersionUID: 68829322193456517L
name
java.lang.String name
serialVersionUID: 1234567890L
title
java.lang.String title
description
java.lang.String description
date
java.util.Date date
publicReleaseDate
java.util.Date publicReleaseDate
assayTypes
java.util.SortedSet<E> assayTypes
manufacturer
Organization manufacturer
organism
Organism organism
factors
java.util.Set<E> factors
experimentContacts
java.util.List<E> experimentContacts
experimentDesignTypes
java.util.Set<E> experimentDesignTypes
designDescription
java.lang.String designDescription
qualityControlDescription
java.lang.String qualityControlDescription
qualityControlTypes
java.util.Set<E> qualityControlTypes
replicateDescription
java.lang.String replicateDescription
replicateTypes
java.util.Set<E> replicateTypes
normalizationTypes
java.util.Set<E> normalizationTypes
publications
java.util.Set<E> publications
arrayDesigns
java.util.Set<E> arrayDesigns
biomaterials
java.util.Set<E> biomaterials
sources
java.util.Set<E> sources
samples
java.util.Set<E> samples
extracts
java.util.Set<E> extracts
labeledExtracts
java.util.Set<E> labeledExtracts
hybridizations
java.util.Set<E> hybridizations
publicIdentifier
java.lang.String publicIdentifier
project
Project project
lastDataModificationDate
java.util.Date lastDataModificationDate
serialVersionUID: 1234567890L
contact
Person contact
roles
java.util.Set<E> roles
experiment
Experiment experiment
serialVersionUID: 1234567890L
name
java.lang.String name
description
java.lang.String description
type
Term type
factorValues
java.util.Set<E> factorValues
experiment
Experiment experiment
serialVersionUID: 1L
value
java.lang.Float value
serialVersionUID: 1234567890L
locked
boolean locked
experiment
Experiment experiment
files
java.util.SortedSet<E> files
importedFiles
java.util.SortedSet<E> importedFiles
importingFiles
java.util.SortedSet<E> importingFiles
supplementalFiles
java.util.SortedSet<E> supplementalFiles
unImportedFiles
java.util.SortedSet<E> unImportedFiles
publicProfile
AccessProfile publicProfile
groupProfiles
java.util.Map<K,V> groupProfiles
lastUpdated
java.util.Date lastUpdated
importDescription
java.lang.String importDescription
serialVersionUID: 1L
term
Term term
serialVersionUID: 1L
value
java.lang.String value
Package gov.nih.nci.caarray.domain.protocol |
serialVersionUID: 1234567890L
parameter
Parameter parameter
protocolApplication
ProtocolApplication protocolApplication
unit
Term unit
serialVersionUID: 1L
value
java.lang.Float value
serialVersionUID: 1234567890L
name
java.lang.String name
defaultValue
AbstractParameterValue defaultValue
protocol
Protocol protocol
serialVersionUID: 1234567890L
contact
java.lang.String contact
description
java.lang.String description
hardware
java.lang.String hardware
name
java.lang.String name
software
java.lang.String software
type
Term type
source
TermSource source
url
java.lang.String url
parameters
java.util.Set<E> parameters
serialVersionUID: 1234567890L
protocol
Protocol protocol
notes
java.lang.String notes
values
java.util.Set<E> values
serialVersionUID: 1L
term
Term term
serialVersionUID: 1L
value
java.lang.String value
Package gov.nih.nci.caarray.domain.publication |
serialVersionUID: 1234567890L
authors
java.lang.String authors
doi
java.lang.String doi
editor
java.lang.String editor
issue
java.lang.String issue
pages
java.lang.String pages
publisher
java.lang.String publisher
pubMedId
java.lang.String pubMedId
title
java.lang.String title
uri
java.lang.String uri
volume
java.lang.String volume
year
java.lang.String year
status
Term status
type
Term type
publication
java.lang.String publication
Package gov.nih.nci.caarray.domain.register |
serialVersionUID: -9198769730580475043L
loginName
java.lang.String loginName
firstName
java.lang.String firstName
middleInitial
java.lang.String middleInitial
lastName
java.lang.String lastName
email
java.lang.String email
phone
java.lang.String phone
fax
java.lang.String fax
organization
java.lang.String organization
address1
java.lang.String address1
address2
java.lang.String address2
city
java.lang.String city
state
State state
province
java.lang.String province
country
Country country
zip
java.lang.String zip
role
java.lang.String role
id
java.lang.Long id
Package gov.nih.nci.caarray.domain.sample |
serialVersionUID: 1234567890L
tissueSite
Term tissueSite
materialType
Term materialType
cellType
Term cellType
diseaseState
Term diseaseState
name
java.lang.String name
description
java.lang.String description
externalId
java.lang.String externalId
characteristics
java.util.Set<E> characteristics
protocolApplications
java.util.List<E> protocolApplications
organism
Organism organism
experiment
Experiment experiment
lastModifiedDataTime
java.util.Date lastModifiedDataTime
serialVersionUID: 1L
bioMaterial
AbstractBioMaterial bioMaterial
category
Category category
unit
Term unit
serialVersionUID: 1234567890L
samples
java.util.Set<E> samples
labeledExtracts
java.util.Set<E> labeledExtracts
serialVersionUID: 1234567890L
label
Term label
extracts
java.util.Set<E> extracts
hybridizations
java.util.Set<E> hybridizations
serialVersionUID: 1L
value
java.lang.Float value
serialVersionUID: 1234567890L
sources
java.util.Set<E> sources
extracts
java.util.Set<E> extracts
serialVersionUID: 1234567890L
samples
java.util.Set<E> samples
providers
java.util.Set<E> providers
serialVersionUID: 1L
term
Term term
serialVersionUID: 1L
value
java.lang.String value
Package gov.nih.nci.caarray.domain.state |
serialVersionUID: 5622159437616247967L
code
java.lang.String code
name
java.lang.String name
Package gov.nih.nci.caarray.domain.vocabulary |
serialVersionUID: 1234567890L
name
java.lang.String name
accession
java.lang.String accession
url
java.lang.String url
source
TermSource source
parents
java.util.Set<E> parents
children
java.util.Set<E> children
serialVersionUID: 1234567890L
value
java.lang.String value
accession
java.lang.String accession
url
java.lang.String url
description
java.lang.String description
categories
java.util.Set<E> categories
source
TermSource source
serialVersionUID: 1234567890L
name
java.lang.String name
url
java.lang.String url
version
java.lang.String version
Package gov.nih.nci.caarray.services |
Class gov.nih.nci.caarray.services.EntityPruner.MaxCollectionSizeExceeededException extends java.lang.Exception implements Serializable |
serialVersionUID: 1L
serialVersionUID: 4865588860956168307L
Package gov.nih.nci.caarray.services.external.v1_0 |
Class gov.nih.nci.caarray.services.external.v1_0.ApiException extends java.lang.Exception implements Serializable |
serialVersionUID: 1L
Class gov.nih.nci.caarray.services.external.v1_0.IncorrectEntityTypeException extends gov.nih.nci.caarray.services.external.v1_0.InvalidReferenceException implements Serializable |
serialVersionUID: 1L
Class gov.nih.nci.caarray.services.external.v1_0.InvalidInputException extends gov.nih.nci.caarray.services.external.v1_0.ApiException implements Serializable |
serialVersionUID: 1L
Class gov.nih.nci.caarray.services.external.v1_0.InvalidReferenceException extends gov.nih.nci.caarray.services.external.v1_0.InvalidInputException implements Serializable |
serialVersionUID: 1L
reference
gov.nih.nci.caarray.external.v1_0.CaArrayEntityReference reference
Class gov.nih.nci.caarray.services.external.v1_0.NoEntityMatchingReferenceException extends gov.nih.nci.caarray.services.external.v1_0.InvalidReferenceException implements Serializable |
serialVersionUID: 1L
Class gov.nih.nci.caarray.services.external.v1_0.UnsupportedCategoryException extends gov.nih.nci.caarray.services.external.v1_0.InvalidInputException implements Serializable |
serialVersionUID: 1L
category
gov.nih.nci.caarray.external.v1_0.CaArrayEntityReference category
Package gov.nih.nci.caarray.util |
serialVersionUID: 1L
hibernateHelper
com.fiveamsolutions.nci.commons.util.HibernateHelper hibernateHelper
processor
com.fiveamsolutions.nci.commons.audit.DefaultProcessor processor
dialect
org.hibernate.dialect.Dialect dialect
- For getting sequence numbers.
idGenerator
gov.nih.nci.caarray.util.CaArrayAuditLogInterceptor.TxIdGenerator idGenerator
serialVersionUID: 3689355407466181430L
label
java.lang.String label
- The property which supplies the option label visible to the end user.
value
java.lang.String value
- The property which supplies the value returned to the server.
serialVersionUID: -2556633166307295370L
Package gov.nih.nci.caarray.util.owlparser |
serialVersionUID: 1L
Package gov.nih.nci.cabio.domain |
serialVersionUID: 1L
id
java.lang.Long id
name
java.lang.String name
bigid
java.lang.String bigid
serialVersionUID: 1L
probeSelectionRegionId
java.lang.Long probeSelectionRegionId
probeCount
java.lang.Long probeCount
strand
java.lang.String strand
serialVersionUID: 1L
sequenceSource
java.lang.String sequenceSource
sequenceType
java.lang.String sequenceType
targetDescription
java.lang.String targetDescription
targetId
java.lang.String targetId
serialVersionUID: 1L
phastConservation
java.lang.String phastConservation
serialVersionUID: 1L
Package gov.nih.nci.cagrid.caarray.service.globus |
Package gov.nih.nci.cagrid.caarray.util |