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java.lang.Objectjava.lang.Enum<ExperimentOntologyCategory>
gov.nih.nci.caarray.domain.project.ExperimentOntologyCategory
public enum ExperimentOntologyCategory
Enum of Ontology categories for various concepts used in caarray The majority of these categories come from the MGED ontology.
Enum Constant Summary | |
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CELL_TYPE
CellType category, used for cell types. |
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CLINICAL_DIAGNOSIS
Clinical Diagnosis category, one of annotation fields allowed by TCGA policy. |
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DISEASE_STATE
DiseaseState category, used for diseases/conditions of an experiment. |
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EXPERIMENT_DESIGN_TYPE
ExperimentDesignType category, for selecting type of experiment design. |
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EXPERIMENTAL_FACTOR_CATEGORY
ExperimentalFactorCategory category, for experimental factor types. |
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EXTERNAL_ID
External Id, used for biomaterials. |
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EXTERNAL_SAMPLE_ID
External Sample Id, used for samples. |
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HISTOLOGIC_DIAGNOSIS
Histologic Diagnosis category, one of annotation fields allowed by TCGA policy. |
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LABEL_COMPOUND
LabelCompound category, used for the label of a LabeledExtract. |
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MATERIAL_TYPE
MaterialType category, used for tissue types. |
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ORGANISM
Organism category, used for organisms. |
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ORGANISM_PART
OrganismPart category, used for tissue site. |
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PATHOLOGIC_STATUS
Pathologic Status category, one of annotation fields allowed by TCGA policy. |
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PROTOCOL_TYPE
ProtocolType category, used for protocol types. |
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PUBLICATION_STATUS
PublicationStatus category, used for status of Publications. |
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PUBLICATION_TYPE
PublicationType category, used for type of Publications. |
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QUALITY_CONTROL_TYPE
QualityControlDescriptionType category, for selecting type of quality control measures. |
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REPLICATE_TYPE
QualityControlDescriptionType category, for selecting type of quality control measures. |
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ROLES
Roles category, used for various roles in an experiment. |
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TECHNOLOGY_TYPE
TechnologyType category, used for array designs. |
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TISSUE_ANATOMIC_SITE
Tissue Anatomic Site category, one of annotation fields allowed by TCGA policy. |
Method Summary | |
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java.lang.String |
getCategoryName()
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ExperimentOntology |
getOntology()
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static ExperimentOntologyCategory |
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. |
static ExperimentOntologyCategory[] |
values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods inherited from class java.lang.Enum |
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clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf |
Methods inherited from class java.lang.Object |
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getClass, notify, notifyAll, wait, wait, wait |
Enum Constant Detail |
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public static final ExperimentOntologyCategory ORGANISM
public static final ExperimentOntologyCategory ORGANISM_PART
public static final ExperimentOntologyCategory MATERIAL_TYPE
public static final ExperimentOntologyCategory CELL_TYPE
public static final ExperimentOntologyCategory DISEASE_STATE
public static final ExperimentOntologyCategory LABEL_COMPOUND
public static final ExperimentOntologyCategory EXPERIMENT_DESIGN_TYPE
public static final ExperimentOntologyCategory QUALITY_CONTROL_TYPE
public static final ExperimentOntologyCategory REPLICATE_TYPE
public static final ExperimentOntologyCategory ROLES
public static final ExperimentOntologyCategory PUBLICATION_TYPE
public static final ExperimentOntologyCategory PUBLICATION_STATUS
public static final ExperimentOntologyCategory CLINICAL_DIAGNOSIS
public static final ExperimentOntologyCategory HISTOLOGIC_DIAGNOSIS
public static final ExperimentOntologyCategory PATHOLOGIC_STATUS
public static final ExperimentOntologyCategory TISSUE_ANATOMIC_SITE
public static final ExperimentOntologyCategory TECHNOLOGY_TYPE
public static final ExperimentOntologyCategory EXPERIMENTAL_FACTOR_CATEGORY
public static final ExperimentOntologyCategory PROTOCOL_TYPE
public static final ExperimentOntologyCategory EXTERNAL_ID
public static final ExperimentOntologyCategory EXTERNAL_SAMPLE_ID
Method Detail |
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public static ExperimentOntologyCategory[] values()
for (ExperimentOntologyCategory c : ExperimentOntologyCategory.values()) System.out.println(c);
public static ExperimentOntologyCategory valueOf(java.lang.String name)
name
- the name of the enum constant to be returned.
java.lang.IllegalArgumentException
- if this enum type has no constant
with the specified name
java.lang.NullPointerException
- if the argument is nullpublic java.lang.String getCategoryName()
public ExperimentOntology getOntology()
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