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java.lang.Objectgov.nih.nci.caarray.domain.AbstractCaArrayObject
gov.nih.nci.caarray.domain.AbstractCaArrayEntity
gov.nih.nci.caarray.domain.array.Gene
public class Gene
A hereditary unit consisting of a sequence of DNA that occupies a specific location on a chromosome and determines a particular characteristic in an organism. The functional and physical unit of heredity passed from parent to offspring.
Field Summary | |
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static java.lang.String |
ENSEMBLE
Name of the Ensemble database. |
static java.lang.String |
ENTREZ_GENE
Name of the Entrez Gene database. |
static java.lang.String |
GENBANK
Name of the GenBank database. |
static java.lang.String |
REF_SEQ
Name of the RefSeq database. |
static java.lang.String |
THC
Name of the THC database. |
static java.lang.String |
UNIGENE
Name of the UniGene database. |
Fields inherited from class gov.nih.nci.caarray.domain.AbstractCaArrayEntity |
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CAARRAY_LSID_AUTHORITY, CAARRAY_LSID_NAMESPACE |
Fields inherited from class gov.nih.nci.caarray.domain.AbstractCaArrayObject |
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DEFAULT_BATCH_SIZE, DEFAULT_STRING_COLUMN_SIZE, LARGE_TEXT_FIELD_LENGTH |
Constructor Summary | |
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Gene()
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Method Summary | |
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void |
addAccessionNumber(java.lang.String databaseName,
java.lang.String accessionNumber)
Add an accession to this gene. |
java.util.List<java.lang.String> |
getAccessionNumbers(java.lang.String databaseName)
Get all the accessions associated with this gene in the given public database. |
java.lang.String |
getEnsemblgeneID()
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java.lang.String |
getEntrezgeneID()
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java.lang.String |
getFullName()
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java.lang.String |
getGenbankAccession()
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java.lang.String |
getGenbankAccessionVersion()
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java.lang.String |
getRefseqAccession()
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java.lang.String |
getSymbol()
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java.lang.String |
getThcAccession()
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java.lang.String |
getUnigeneclusterID()
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void |
setEnsemblgeneID(java.lang.String ensemblgeneID)
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void |
setEntrezgeneID(java.lang.String entrezgeneID)
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void |
setFullName(java.lang.String fullName)
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void |
setGenbankAccession(java.lang.String genbankAccession)
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void |
setGenbankAccessionVersion(java.lang.String genbankAccessionVersion)
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void |
setRefseqAccession(java.lang.String refseqAccession)
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void |
setSymbol(java.lang.String symbol)
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void |
setThcAccession(java.lang.String thcAccession)
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void |
setUnigeneclusterID(java.lang.String unigeneclusterID)
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Methods inherited from class gov.nih.nci.caarray.domain.AbstractCaArrayEntity |
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getLsid, getLsidAuthority, getLsidNamespace, getLsidObjectId, setLsid, setLsid, setLsidForEntity |
Methods inherited from class gov.nih.nci.caarray.domain.AbstractCaArrayObject |
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equals, getCaBigId, getId, getPostLoadSecurityPolicies, getRemoteApiSecurityPolicies, hashCode, setCaBigId, setId, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
Field Detail |
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public static final java.lang.String UNIGENE
public static final java.lang.String GENBANK
public static final java.lang.String ENTREZ_GENE
public static final java.lang.String ENSEMBLE
public static final java.lang.String REF_SEQ
public static final java.lang.String THC
Constructor Detail |
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public Gene()
Method Detail |
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public java.lang.String getSymbol()
public void setSymbol(java.lang.String symbol)
symbol
- the symbol to set@Length(max=2000) public java.lang.String getFullName()
public void setFullName(java.lang.String fullName)
fullName
- the fullName to setpublic java.lang.String getEnsemblgeneID()
public void setEnsemblgeneID(java.lang.String ensemblgeneID)
ensemblgeneID
- the ensemblgeneID to setpublic java.lang.String getEntrezgeneID()
public void setEntrezgeneID(java.lang.String entrezgeneID)
entrezgeneID
- the entrezgeneID to setpublic java.lang.String getGenbankAccession()
public void setGenbankAccession(java.lang.String genbankAccession)
genbankAccession
- the genbankAccession to setpublic java.lang.String getGenbankAccessionVersion()
public void setGenbankAccessionVersion(java.lang.String genbankAccessionVersion)
genbankAccessionVersion
- the genbankAccessionVersion to setpublic java.lang.String getUnigeneclusterID()
public void setUnigeneclusterID(java.lang.String unigeneclusterID)
unigeneclusterID
- the unigeneclusterID to setpublic java.lang.String getRefseqAccession()
public void setRefseqAccession(java.lang.String refseqAccession)
refseqAccession
- the refseqAccession to setpublic java.lang.String getThcAccession()
public void setThcAccession(java.lang.String thcAccession)
thcAccession
- the thcAccession to setpublic void addAccessionNumber(java.lang.String databaseName, java.lang.String accessionNumber)
databaseName
- the name of the public database.accessionNumber
- the accession number to add.public java.util.List<java.lang.String> getAccessionNumbers(java.lang.String databaseName)
databaseName
- the name of the public database.
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