Serialized Form


Package org.LexGrid.builtins

Class org.LexGrid.builtins.TsAnyType extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_anyObject

java.util.List<E> _anyObject
Field _anyObject.


Package org.LexGrid.codingSchemes

Class org.LexGrid.codingSchemes.CodingScheme extends VersionableAndDescribable implements Serializable

Serialized Fields

_codingSchemeName

java.lang.String _codingSchemeName
The unique local identifier used to uniquely reference this coding scheme within the context of a message or container. codingSchemeName must match a local id of a supportedCodingScheme in the mappings section.


_codingSchemeURI

java.lang.String _codingSchemeURI
The official URI for this coding scheme . This URI must also be present in the supportedCodingScheme entry that matches the codingSchemeName.


_formalName

java.lang.String _formalName
The official or common name by which this coding scheme is known. (optional)


_defaultLanguage

java.lang.String _defaultLanguage
The local identifier of the language that is used in all presentations, descriptions, etc. in this coding scheme if not otherwise specified. defaultLanguage must match a local id of a supportedLanguage in the mappings section.


_approxNumConcepts

java.lang.Long _approxNumConcepts
The approximate number of entries in the lexical portion of this scheme. This is used as a hint for browsers and services


_representsVersion

java.lang.String _representsVersion
The specific version of the resource represented by this coding scheme.


_localNameList

java.util.List<E> _localNameList
Name that can be used to reference the coding scheme within the context of a given service.


_sourceList

java.util.List<E> _sourceList
The local identifiers of the source(s) of this coding scheme. Must match a local id of a supportedSource in the corresponding mappings section.


_copyright

Text _copyright
Information about rights held in and over the resource. Typically, copyright information includes a statement about various property rights associated with the resource, including intellectual property rights.


_mappings

Mappings _mappings
A list of the local identifiers used in this resource along with the corresponding URI's, if known.


_properties

Properties _properties
A list of propeties used in the description of this coding scheme.


_entities

Entities _entities
The set of lexical assertions made by this coding scheme.


_relationsList

java.util.List<E> _relationsList
The set of semantic assertions made by this coding scheme.

Class org.LexGrid.codingSchemes.CodingSchemes extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeList

java.util.List<E> _codingSchemeList
An individual coding scheme in the collection.


Package org.LexGrid.commonTypes

Class org.LexGrid.commonTypes.Describable extends java.lang.Object implements Serializable

Serialized Fields

_entityDescription

EntityDescription _entityDescription
The description of the resource.

Class org.LexGrid.commonTypes.EntityDescription extends TsAnyType implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.commonTypes.Properties extends java.lang.Object implements Serializable

Serialized Fields

_propertyList

java.util.List<E> _propertyList
An entry in the property list.

Class org.LexGrid.commonTypes.Property extends Versionable implements Serializable

Serialized Fields

_propertyName

java.lang.String _propertyName
The local identifier that defines the meaning of this particular property entry. Must match a local id of a supportedProperty in the corresponding mappings section.


_propertyId

java.lang.String _propertyId
A unique identifier of this particular propert/resource/value instance.


_propertyType

java.lang.String _propertyType
The LexGrid model element that this property represents. As an example, the codingScheme "copyright" attribute could be represented by a property with a propertyType that mapped to lgCS:copyRight. Must match a local id of a supportedPropertyType in the corresponding mappings section.


_language

java.lang.String _language
The local identifier of the language of the property value. Must match a local id of a supportedLanguage in the corresponding mappings section. If omitted, and language is applicable to this property, the defaultLanguage of the surrounding resource is used.


_sourceList

java.util.List<E> _sourceList
The local identifiers of the source(s) of this property. Must match a local id of a supportedSource in the corresponding mappings section.


_usageContextList

java.util.List<E> _usageContextList
The local identifiers of the context(s) in which this property applies. Must match a local id of a supportedContext in the corresponding mappings section.


_propertyQualifierList

java.util.List<E> _propertyQualifierList
A qualifier that provides additional information about this particular property and/or its association with the resource.


_value

Text _value
The value of the property associated with this particular resource. Note that "text" may be any type, including a URI, html fragment, etc.

Class org.LexGrid.commonTypes.PropertyQualifier extends java.lang.Object implements Serializable

Serialized Fields

_propertyQualifierName

java.lang.String _propertyQualifierName
The local name of the qualifier. Must match a local id of a supportedPropertyQualifier in the corresponding mappings section.


_propertyQualifierType

java.lang.String _propertyQualifierType
The local name of the qualifier type. Must match a local id of a supportedPropertyQualifierType in the corresponding mappings section.


_value

Text _value
Field _value.

Class org.LexGrid.commonTypes.Source extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_subRef

java.lang.String _subRef
The page, subheading, id or other localized information within the source itself. Used to make a source reference more precise. Must be absent in supportedSource.


_role

java.lang.String _role
The role or purpose of the the source for this particular resource (e.g. author, distributor). Must be absent in supportedSource

Class org.LexGrid.commonTypes.Text extends TsAnyType implements Serializable

Serialized Fields

_dataType

java.lang.String _dataType
The local identifier of the format or data type of the text. Must match a local id of a supportedDataType in the corresponding mappings section. Default: tsCaseSensitiveIA5String


_content

java.lang.String _content
internal content storage

Class org.LexGrid.commonTypes.Versionable extends java.lang.Object implements Serializable

Serialized Fields

_isActive

java.lang.Boolean _isActive
True means that this resource is searchable and browsable if the temporal context of the operation falls between effectiveDate and expirationDate. False means that this resource is only accessible if requested by id or by a search that specifies that inactive retrievals are allowed. Default: True


_status

java.lang.String _status
The status code associated with the particular resource. The semantics and business rules of entryStatus are defined by the containing system, but there needs to be a mapping into isActive above.


_effectiveDate

java.util.Date _effectiveDate
The date and time that this resource is considered to be active. To be considered active, isActive must be true, and the temporal context of the operation must be greater than effectiveDate. If omitted, all temporal contexts are considered to be valid.


_expirationDate

java.util.Date _expirationDate
The date and time that this resource is considered to become inActive. To be considered active, isActive must be true, and the temporal context of the operation must be less than expirationDate. If omitted, all temporal contexts are considered to be valid.


_owner

Source _owner
The owner of the resource. The specific semantics of owner is defined by the busniess rules of the implementor, including the rules of the owner field is absent.


_entryState

EntryState _entryState
The description of the current state of the resource and its change history.

Class org.LexGrid.commonTypes.VersionableAndDescribable extends Versionable implements Serializable

Serialized Fields

_entityDescription

EntityDescription _entityDescription
The description of the resource.


Package org.LexGrid.concepts

Class org.LexGrid.concepts.Comment extends Property implements Serializable

Class org.LexGrid.concepts.Concept extends Entity implements Serializable

Class org.LexGrid.concepts.Definition extends Property implements Serializable

Serialized Fields

_isPreferred

java.lang.Boolean _isPreferred
True means this is the preferred definition for the given language and context.

Class org.LexGrid.concepts.Entities extends java.lang.Object implements Serializable

Serialized Fields

_entityList

java.util.List<E> _entityList
An individual entity within the set

Class org.LexGrid.concepts.Entity extends VersionableAndDescribable implements Serializable

Serialized Fields

_entityCode

java.lang.String _entityCode
The entity code being defined.


_entityCodeNamespace

java.lang.String _entityCodeNamespace
Local identifier of the namespace of the entityCode. entityCodeNamespace must match a local id of a supportedNamespace in the corresponding mappings section. If omitted, the URI of the defaultCodingScheme will be used as the namespace for the entity code.


_isAnonymous

java.lang.Boolean _isAnonymous
True means that the entityCode is synthetic, and doesn't actually exist in the namespace. isAnonymous is used for synthetic top and bottom nodes as well as blank or anonymous inner class definitions. Default: False


_isDefined

java.lang.Boolean _isDefined
True means that this entityCode is considered to be completely defined (i.e. necessary and sufficient) within the context of the containing code system. False means that only the necessary components are present. If omitted, the state of the entityCode definition is not known.


_entityTypeList

java.util.List<E> _entityTypeList
The local identifiers of the entity types(s) represented by this entity code. Must match a local id of a supportedEntityType in the corresponding mappings section.


_presentationList

java.util.List<E> _presentationList
The set of presentations for this entityCode that are defined in the containing coding scheme.


_definitionList

java.util.List<E> _definitionList
The set of definitions for this entityCode that are defined in the containing coding scheme.


_commentList

java.util.List<E> _commentList
The set of comments for this entityCode that are defined in the containing coding scheme.


_propertyList

java.util.List<E> _propertyList
The set of properties of this entityCode that are defined in the containing coding scheme.


_propertyLinkList

java.util.List<E> _propertyLinkList
A link between two properties for the same coded entry. Example: literal translation of, acronym of

Class org.LexGrid.concepts.Instance extends Entity implements Serializable

Class org.LexGrid.concepts.Presentation extends Property implements Serializable

Serialized Fields

_isPreferred

java.lang.Boolean _isPreferred
True means that, if the text meets the selection criteria, it should be the preferred form. For a given language there should be only one preferred presentation.


_degreeOfFidelity

java.lang.String _degreeOfFidelity
A local identifier that states how closely a term approximates the intended meaning of an entry code. degreeOfFidelity must match a local id of a supportedDegreeOfFidelity in the corresponding mappings section.


_matchIfNoContext

java.lang.Boolean _matchIfNoContext
True means that this presentation is valid in a acontextual setting - that it is always valid in the given language. Default: true if there are no property usageContexts, false otherwise.


_representationalForm

java.lang.String _representationalForm
A local identifier that states how the term represents the concept (abbrev, acronym, etc.) representationalForm must match a local id of a representationalForm in the corresponding mappings section.

Class org.LexGrid.concepts.PropertyLink extends java.lang.Object implements Serializable

Serialized Fields

_sourceProperty

java.lang.String _sourceProperty
The identifier of the first property in the link.


_propertyLink

java.lang.String _propertyLink
The local name of the type of linke between properties. propertyLink must match a local id of a supportedPropertyLink in the corresponding mappings section


_targetProperty

java.lang.String _targetProperty
The identifier of the second property in the link.


Package org.LexGrid.LexBIG.DataModel.cagrid

Class org.LexGrid.LexBIG.DataModel.cagrid.AssociationIdentification extends java.lang.Object implements Serializable

Serialized Fields

_relationshipName

java.lang.String _relationshipName
Name of a coding scheme relationship

Class org.LexGrid.LexBIG.DataModel.cagrid.AssociationReverseName extends java.lang.Object implements Serializable

Serialized Fields

_value

java.lang.String _value
reverse name of an Association

Class org.LexGrid.LexBIG.DataModel.cagrid.CodeExistence extends java.lang.Object implements Serializable

Serialized Fields

_isPresent

java.lang.Boolean _isPresent
flag indicator for presence of concept reference in a set

Class org.LexGrid.LexBIG.DataModel.cagrid.CodeRelationship extends java.lang.Object implements Serializable

Serialized Fields

_isCodeRelated

java.lang.Boolean _isCodeRelated
flag indicating a concept code is releated to another.

Class org.LexGrid.LexBIG.DataModel.cagrid.CodeState extends java.lang.Object implements Serializable

Serialized Fields

_isActive

java.lang.Boolean _isActive
Indicator of concept code retirement if true.

Class org.LexGrid.LexBIG.DataModel.cagrid.CodingSchemeCopyRight extends java.lang.Object implements Serializable

Serialized Fields

_copyrightTextOrURL

java.lang.String _copyrightTextOrURL
A string indicating a URL to a copyright or containing the complete text of a copyright.

Class org.LexGrid.LexBIG.DataModel.cagrid.CodingSchemeIdentification extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name
The name of a coding scheme. Usually descriptive or a mnemonic.

Class org.LexGrid.LexBIG.DataModel.cagrid.ConceptIdentification extends java.lang.Object implements Serializable

Serialized Fields

_code

java.lang.String _code
Text representation of a concept code

Class org.LexGrid.LexBIG.DataModel.cagrid.Direction extends java.lang.Object implements Serializable

Serialized Fields

_isForward

java.lang.Boolean _isForward
Indication of traversal direction of a graph edge

Class org.LexGrid.LexBIG.DataModel.cagrid.DirectionalAssociationIdentification extends AssociationIdentification implements Serializable

Serialized Fields

_isForward

java.lang.Boolean _isForward
Direction Indication associated with an association name. If true this is a forward name. If false, this is a reverse name

Class org.LexGrid.LexBIG.DataModel.cagrid.ExtensionIdentification extends java.lang.Object implements Serializable

Serialized Fields

_lexBIGExtensionName

java.lang.String _lexBIGExtensionName
Name of a class that extends functionality. This name serves as an identifier to the api to call through to the service layer for a particular extension class.

Class org.LexGrid.LexBIG.DataModel.cagrid.GraphResolutionPolicy extends java.lang.Object implements Serializable

Serialized Fields

_keeptLastAssociationUnresolved

java.lang.Boolean _keeptLastAssociationUnresolved
Keep the last hop while resolving associations to the resolveAssociationDepth unresolved. This is useful while drawing trees of an ontology and we need a quick way to tell if the tree can be expanded further


_maximumToReturn

java.lang.Integer _maximumToReturn
Maximum number of entries to return; a value less than 1 Maximum number of entries to return; a value less than 1 indicates to return unlimited entries (to the limit specified in the runtime configuration file).


_resolveAssociationDepth

java.lang.Integer _resolveAssociationDepth
Number of hops to resolve associations. 0 means leave all associations unresolved, 1 means immediate neighbors, etc. -1 means follow the entire closure of the graph.


_resolveBackwards

java.lang.Boolean _resolveBackwards
True means resolve the target to source associations


_resolveCodedEntryDepth

java.lang.Integer _resolveCodedEntryDepth
Depth in the graph to resolve coded entries. - 1 means don't resolve anything - just return the concept references, 0 means resolve just the root nodes, 1 means resolve 1 deep, etc.


_resolveForward

java.lang.Boolean _resolveForward
True means resolve from the source to the target direction.


_graphFocus

ConceptReference _graphFocus
Field _graphFocus.


_propertyTypesList

java.util.List<E> _propertyTypesList
Field _propertyTypesList.


_filterOptions

LocalNameList _filterOptions
Field _filterOptions.


_propertyNames

LocalNameList _propertyNames
Field _propertyNames.


_sortOptions

SortOptionList _sortOptions
Field _sortOptions.

Class org.LexGrid.LexBIG.DataModel.cagrid.HierarchyIdentification extends java.lang.Object implements Serializable

Serialized Fields

_identifier

java.lang.String _identifier
Identifier of a Hierarchy in a coding scheme.

Class org.LexGrid.LexBIG.DataModel.cagrid.HierarchyResolutionPolicy extends java.lang.Object implements Serializable

Serialized Fields

_resolveConcepts

java.lang.Boolean _resolveConcepts
True to fill in all information for concepts identified as part of the returned association; false to return only basic references


_associationQualifiers

NameAndValueList _associationQualifiers
Field _associationQualifiers.


_conceptCode

ConceptIdentification _conceptCode
Field _conceptCode.


_hierarchyId

HierarchyIdentification _hierarchyId
Field _hierarchyId.

Class org.LexGrid.LexBIG.DataModel.cagrid.LanguageIdentification extends java.lang.Object implements Serializable

Serialized Fields

_identifier

java.lang.String _identifier
Field _identifier.

Class org.LexGrid.LexBIG.DataModel.cagrid.MatchCriteria extends java.lang.Object implements Serializable

Serialized Fields

_text

java.lang.String _text
Field _text.

Class org.LexGrid.LexBIG.DataModel.cagrid.NodeListPolicy extends java.lang.Object implements Serializable

Serialized Fields

_maximumToReturn

java.lang.Integer _maximumToReturn
Field _maximumToReturn.


_resolveAssociationDepth

java.lang.Integer _resolveAssociationDepth
Field _resolveAssociationDepth.


_resolveBackward

java.lang.Boolean _resolveBackward
Field _resolveBackward.


_resolveForward

java.lang.Boolean _resolveForward
Field _resolveForward.


_graphFocus

ConceptReference _graphFocus
Field _graphFocus.

Class org.LexGrid.LexBIG.DataModel.cagrid.PropertyIdentification extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name
Field _name.

Class org.LexGrid.LexBIG.DataModel.cagrid.RelationContainerIdentification extends java.lang.Object implements Serializable

Serialized Fields

_contextName

java.lang.String _contextName
Field _contextName.

Class org.LexGrid.LexBIG.DataModel.cagrid.RelationshipDistanceBasedPolicy extends RelationshipPolicy implements Serializable

Serialized Fields

_distance

java.lang.Integer _distance
Field _distance.

Class org.LexGrid.LexBIG.DataModel.cagrid.RelationshipPolicy extends java.lang.Object implements Serializable

Serialized Fields

_targetConcept

ConceptReference _targetConcept
Field _targetConcept.


_sourceConcept

ConceptReference _sourceConcept
Field _sourceConcept.

Class org.LexGrid.LexBIG.DataModel.cagrid.RelationshipTypeBasedPolicy extends RelationshipPolicy implements Serializable

Serialized Fields

_directOnly

java.lang.Boolean _directOnly
Field _directOnly.

Class org.LexGrid.LexBIG.DataModel.cagrid.ResolveConcepts extends java.lang.Object implements Serializable

Serialized Fields

_flag

java.lang.Boolean _flag
Field _flag.

Class org.LexGrid.LexBIG.DataModel.cagrid.SetResolutionPolicy extends java.lang.Object implements Serializable

Serialized Fields

_maximumToReturn

java.lang.Integer _maximumToReturn
Field _maximumToReturn.


_resolveConcepts

java.lang.Boolean _resolveConcepts
Field _resolveConcepts.


_sortOptions

SortOptionList _sortOptions
Field _sortOptions.


_filterOptions

LocalNameList _filterOptions
Field _filterOptions.


_propertyNames

LocalNameList _propertyNames
Field _propertyNames.


_propertyTypesList

java.util.List<E> _propertyTypesList
Field _propertyTypesList.

Class org.LexGrid.LexBIG.DataModel.cagrid.Status extends java.lang.Object implements Serializable

Serialized Fields

_value

java.lang.String _value
Field _value.

Class org.LexGrid.LexBIG.DataModel.cagrid.TestDirectEdgeOnly extends java.lang.Object implements Serializable

Serialized Fields

_flag

java.lang.Boolean _flag
Field _flag.


Package org.LexGrid.LexBIG.DataModel.Collections

Class org.LexGrid.LexBIG.DataModel.Collections.AbsoluteCodingSchemeVersionReferenceList extends java.lang.Object implements Serializable

Serialized Fields

_absoluteCodingSchemeVersionReferenceList

java.util.List<E> _absoluteCodingSchemeVersionReferenceList
Field _absoluteCodingSchemeVersionReferenceList.

Class org.LexGrid.LexBIG.DataModel.Collections.AssociatedConceptList extends java.lang.Object implements Serializable

Serialized Fields

_associatedConceptList

java.util.List<E> _associatedConceptList
Field _associatedConceptList.

Class org.LexGrid.LexBIG.DataModel.Collections.AssociatedDataList extends java.lang.Object implements Serializable

Serialized Fields

_associatedDataList

java.util.List<E> _associatedDataList
Field _associatedDataList.

Class org.LexGrid.LexBIG.DataModel.Collections.AssociationList extends java.lang.Object implements Serializable

Serialized Fields

_associationList

java.util.List<E> _associationList
Field _associationList.

Class org.LexGrid.LexBIG.DataModel.Collections.CodedNodeReferenceList extends java.lang.Object implements Serializable

Serialized Fields

_codedNodeReferenceList

java.util.List<E> _codedNodeReferenceList
Field _codedNodeReferenceList.

Class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeRenderingList extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeRenderingList

java.util.List<E> _codingSchemeRenderingList
Field _codingSchemeRenderingList.

Class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeSummaryList extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeSummaryList

java.util.List<E> _codingSchemeSummaryList
Field _codingSchemeSummaryList.

Class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeTagList extends java.lang.Object implements Serializable

Serialized Fields

_tagList

java.util.List<E> _tagList
Field _tagList.

Class org.LexGrid.LexBIG.DataModel.Collections.CodingSchemeVersionList extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexBIG.DataModel.Collections.ConceptCodes extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexBIG.DataModel.Collections.ConceptReferenceList extends java.lang.Object implements Serializable

Serialized Fields

_conceptReferenceList

java.util.List<E> _conceptReferenceList
Field _conceptReferenceList.

Class org.LexGrid.LexBIG.DataModel.Collections.ExtensionDescriptionList extends java.lang.Object implements Serializable

Serialized Fields

_extensionDescriptionList

java.util.List<E> _extensionDescriptionList
Field _extensionDescriptionList.

Class org.LexGrid.LexBIG.DataModel.Collections.LocalNameList extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexBIG.DataModel.Collections.MetadataPropertyList extends java.lang.Object implements Serializable

Serialized Fields

_metadataPropertyList

java.util.List<E> _metadataPropertyList
Field _metadataPropertyList.

Class org.LexGrid.LexBIG.DataModel.Collections.ModuleDescriptionList extends java.lang.Object implements Serializable

Serialized Fields

_moduleDescriptionList

java.util.List<E> _moduleDescriptionList
Field _moduleDescriptionList.

Class org.LexGrid.LexBIG.DataModel.Collections.NameAndValueList extends java.lang.Object implements Serializable

Serialized Fields

_nameAndValueList

java.util.List<E> _nameAndValueList
Field _nameAndValueList.

Class org.LexGrid.LexBIG.DataModel.Collections.NCIChangeEventList extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexBIG.DataModel.Collections.ResolvedConceptReferenceList extends java.lang.Object implements Serializable

Serialized Fields

_incomplete

java.lang.Boolean _incomplete
True means that the maxToReturn or some other limit resulted in the list being incomplete. Default: false


_resolvedConceptReferenceList

java.util.List<E> _resolvedConceptReferenceList
Field _resolvedConceptReferenceList.

Class org.LexGrid.LexBIG.DataModel.Collections.SortDescriptionList extends java.lang.Object implements Serializable

Serialized Fields

_sortDescriptionList

java.util.List<E> _sortDescriptionList
Field _sortDescriptionList.

Class org.LexGrid.LexBIG.DataModel.Collections.SortOptionList extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexBIG.DataModel.Collections.SupportedElementList extends java.lang.Object implements Serializable

Serialized Fields

_supportedElementList

java.util.List<E> _supportedElementList
Field _supportedElementList.

Class org.LexGrid.LexBIG.DataModel.Collections.SystemReleaseList extends java.lang.Object implements Serializable

Serialized Fields

_systemReleaseList

java.util.List<E> _systemReleaseList
Field _systemReleaseList.


Package org.LexGrid.LexBIG.DataModel.Core

Class org.LexGrid.LexBIG.DataModel.Core.AbsoluteCodingSchemeVersionReference extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeURN

java.lang.String _codingSchemeURN
The URN of the referenced coding scheme.


_codingSchemeVersion

java.lang.String _codingSchemeVersion
Field _codingSchemeVersion.

Class org.LexGrid.LexBIG.DataModel.Core.AssociatedConcept extends ResolvedConceptReference implements Serializable

Serialized Fields

_isNavigable

java.lang.Boolean _isNavigable
True means that the association with this concept has been explicitly asserted and can be used for inferences. False means that the association was asserted in the other direction and cannot be used. Default: true


_associationQualifiers

NameAndValueList _associationQualifiers
Codes that qualify the complete association. Qualifiers may include "computed", degrees of certainty, etc.

Class org.LexGrid.LexBIG.DataModel.Core.AssociatedData extends java.lang.Object implements Serializable

Serialized Fields

_dataType

java.lang.String _dataType
The data type of the property. The data itself is the value.


_id

java.lang.String _id
An identifier that makes this chunk of data unique within an association.


_content

java.lang.String _content
internal content storage


_anyObject

java.util.List<E> _anyObject
Field _anyObject.

Class org.LexGrid.LexBIG.DataModel.Core.Association extends java.lang.Object implements Serializable

Serialized Fields

_associationName

java.lang.String _associationName
The local name of the association


_directionalName

java.lang.String _directionalName
The name assigned to the association so that it can be read correctly going from the containing concept to the contained concept.


_associationReference

ConceptReference _associationReference
The concept reference that defines the association


_associatedConcepts

AssociatedConceptList _associatedConcepts
The list of concepts that occur as the source or target of this association


_associatedData

AssociatedDataList _associatedData
The list of data elements that occur as the source or target of this association.

Class org.LexGrid.LexBIG.DataModel.Core.CodedNodeReference extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeName

java.lang.String _codingSchemeName
The name of the coding scheme containing the entity


_code

java.lang.String _code
The code uniquely identifying the entity within the coding scheme.


_codeNamespace

java.lang.String _codeNamespace
Local identifier of the code namespace. If omitted, namespace is implied from the URI of the coding scheme.


_entityTypeList

java.util.List<E> _entityTypeList
Local identifiers of the types(s) defining the referenced entity (e.g. 'concept', 'instance').

Class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeSummary extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeURI

java.lang.String _codingSchemeURI
The official URN of the coding scheme


_representsVersion

java.lang.String _representsVersion
The version of the coding scheme that this entry represents, if applicable and known. Note that that is the combination of the codingSchemeURN and the version that uniquely represents a coding scheme in the system.


_localName

java.lang.String _localName
The short, locally unique name for the coding scheme.


_formalName

java.lang.String _formalName
The official name of the coding scheme


_codingSchemeDescription

EntityDescription _codingSchemeDescription
A short description of the coding scheme contents.

Class org.LexGrid.LexBIG.DataModel.Core.CodingSchemeVersionOrTag extends java.lang.Object implements Serializable

Serialized Fields

_choiceValue

java.lang.Object _choiceValue
Internal choice value storage


_version

java.lang.String _version
The specific version of the coding scheme.


_tag

java.lang.String _tag
The specific tag for the coding scheme

Class org.LexGrid.LexBIG.DataModel.Core.ConceptReference extends CodedNodeReference implements Serializable

Serialized Fields

_conceptCode

java.lang.String _conceptCode
Uniquely identifies the concept within the coding scheme. Alias for CodedNodeReference:code.

Class org.LexGrid.LexBIG.DataModel.Core.LogEntry extends java.lang.Object implements Serializable

Serialized Fields

_associatedURL

java.lang.String _associatedURL
The URL associated with the log entry. Used for retrieving particular types of logs.


_entryTime

java.util.Date _entryTime
The time that the entry was made. Time is local to originator location.


_entryLevel

LogLevel _entryLevel
Level (error, warn, info, ...)


_messageNumber

java.lang.Integer _messageNumber
Number that uniquely identifies the message within the error system.


_processUID

java.lang.String _processUID
Unique identifier of the process that generated the log entry.


_programName

java.lang.String _programName
Name of program that generated the log entry


_message

java.lang.String _message
Text of message

Class org.LexGrid.LexBIG.DataModel.Core.MetadataProperty extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name
The metadata property name.


_value

java.lang.String _value
The metadata property value.


_codingSchemeURI

java.lang.String _codingSchemeURI
The registered URN of the associated coding scheme.


_codingSchemeVersion

java.lang.String _codingSchemeVersion
The version of the associated coding scheme. Note that that is the combination of the codingSchemeURN and the version that uniquely represents a coding scheme in the system.


_contextList

java.util.List<E> _contextList
Defines 0 or more named contexts for the property .

Class org.LexGrid.LexBIG.DataModel.Core.NameAndValue extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_name

java.lang.String _name
A local name or other identifier

Class org.LexGrid.LexBIG.DataModel.Core.ReferenceLink extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_href

java.lang.String _href
The actual link

Class org.LexGrid.LexBIG.DataModel.Core.ResolvedCodedNodeReference extends ConceptReference implements Serializable

Serialized Fields

_codingSchemeURI

java.lang.String _codingSchemeURI
The URI of the associated coding scheme, if known.


_codingSchemeVersion

java.lang.String _codingSchemeVersion
The version of the associated coding scheme, if known.


_entityDescription

EntityDescription _entityDescription
Primary text describing the referenced entity. Always resolved, if present.


_entity

Entity _entity
The referenced entity, optionally resolved.


_sourceOf

AssociationList _sourceOf
The list of associations for which the referenced code acts as the source (lhs, parent, ..) for. If this element is absent, no information is available about the target nodes. If the element is present, but 0 length, the code does not appear as the source of any associations (in the context of the containing graph).


_targetOf

AssociationList _targetOf
The list of associations for which the referenced code acts as the target (rhs, child..) for. If this element is absent, no information is available about the source nodes. If the element is present, but 0 length, the CodedNode doesn't appear as the target of any associations (in the context of the containing graph).

Class org.LexGrid.LexBIG.DataModel.Core.ResolvedConceptReference extends ResolvedCodedNodeReference implements Serializable

Serialized Fields

_referencedEntry

Concept _referencedEntry
The resolved concept, if present. Alias for ResolvedCodedNodeReference:entity

Class org.LexGrid.LexBIG.DataModel.Core.SupportedElement extends java.lang.Object implements Serializable

Serialized Fields

_isComplete

java.lang.Boolean _isComplete
True means that the local reference is considered "complete". The exact interpretation of this depends upon the element type - if it is the localName of a code system, then complete means that all codes form the particular version are present. If it is a matching algorithm, complete means that all of the codes in the list have been indexed by the algorithm, etc.


Package org.LexGrid.LexBIG.DataModel.Core.types

Class org.LexGrid.LexBIG.DataModel.Core.types.CodingSchemeVersionStatus extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.

Class org.LexGrid.LexBIG.DataModel.Core.types.LogLevel extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.


Package org.LexGrid.LexBIG.DataModel.enums

Class org.LexGrid.LexBIG.DataModel.enums.ActiveOption extends java.lang.Object implements Serializable

Serialized Fields

_activeOptionName

java.lang.String _activeOptionName
Options describing the status of a concept. Values must include: ACTIVE_ONLY, INACTIVE_ONLY, ALL

Class org.LexGrid.LexBIG.DataModel.enums.HierarchyPathResolveOption extends java.lang.Object implements Serializable

Serialized Fields

_pathToRootResovleOption

java.lang.String _pathToRootResovleOption
resolve option for a hiearchy path to root. Use limited to the following options: ALL, ONE, ONE_PER_HIERARCHY, ONE_PER_ROOT

Class org.LexGrid.LexBIG.DataModel.enums.PropertyType extends java.lang.Object implements Serializable

Serialized Fields

_propertyTypeOption

java.lang.String _propertyTypeOption
Option from a set type of properties. Values can only be: COMMENT, DEFINITION, INSTRUCTION, PRESENTATION, GENERIC

Class org.LexGrid.LexBIG.DataModel.enums.SearchDesignationOption extends java.lang.Object implements Serializable

Serialized Fields

_searchDesignationOptionName

java.lang.String _searchDesignationOptionName
Field _searchDesignationOptionName.


Package org.LexGrid.LexBIG.DataModel.InterfaceElements

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.CodingSchemeRendering extends java.lang.Object implements Serializable

Serialized Fields

_codingSchemeSummary

CodingSchemeSummary _codingSchemeSummary
Summary of the coding scheme content as rendered by the service.


_renderingDetail

RenderingDetail _renderingDetail
Service specific information about the coding scheme renderin


_serviceHandle

ReferenceLink _serviceHandle
The URL of a service the represents this coding scheme.


_referenceLink

ReferenceLink _referenceLink
The URL that represents the coding scheme itself within the service.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExportStatus extends ProcessStatus implements Serializable

Serialized Fields

_destination

java.lang.String _destination
Indicates the destination of the information being exported; missing if no export is in progress.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.ExtensionDescription extends ModuleDescription implements Serializable

Serialized Fields

_extensionClass

java.lang.String _extensionClass
The Java class name of the extension.


_extensionBaseClass

java.lang.String _extensionBaseClass
The Java base class of the extension.


_extensionProvider

Source _extensionProvider
The extension provider

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.LoadStatus extends ProcessStatus implements Serializable

Serialized Fields

_numConceptsLoaded

java.lang.Integer _numConceptsLoaded
Number of concepts that have been processed.


_numRelationsLoaded

java.lang.Integer _numRelationsLoaded
Number of relations that have been processed.


_loadSource

java.lang.String _loadSource
Indicates the source of the information being loaded; missing if no load is in progress.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.ModuleDescription extends java.lang.Object implements Serializable

Serialized Fields

_name

java.lang.String _name
The module name.


_version

java.lang.String _version
The module version identifier.


_description

java.lang.String _description
A description of the module function, etc.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.ProcessStatus extends java.lang.Object implements Serializable

Serialized Fields

_startTime

java.util.Date _startTime
Time that the operation started; missing if not yet started.


_endTime

java.util.Date _endTime
The time that the load completed; missing if the operation is still underway.


_state

ProcessState _state
State of the operation.


_message

java.lang.String _message
Optional status message to convey additional information about the current state of the operation.


_errorsLogged

java.lang.Boolean _errorsLogged
If true, error messages have been written to the associated log; default is false.


_warningsLogged

java.lang.Boolean _warningsLogged
If true, warning messages have been written to the associated log; default is false.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.RenderingDetail extends java.lang.Object implements Serializable

Serialized Fields

_lastUpdateTime

java.util.Date _lastUpdateTime
Timestamp when this coding scheme was last updated within the context of the containing service


_versionStatus

CodingSchemeVersionStatus _versionStatus
Status of the coding scheme version within the service (pending, active, inactive). Note that a pending deactivation is identified by the presence of a deactivate date.


_deactivateDate

java.util.Date _deactivateDate
If present, this is that date that this coding scheme is scheduled to be deactivated (versionStatus = 'pending' or versionStatus='active') or was actually inactivated (versionStatus='inactive')


_versionTags

CodingSchemeTagList _versionTags
The version metatags associated with this coding scheme in this service.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortDescription extends ExtensionDescription implements Serializable

Serialized Fields

_restrictToContextList

java.util.List<E> _restrictToContextList
Indicates the context in which the sort algorithm can be applied. If unspecified, all contexts are assumed to be valid.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.SortOption extends java.lang.Object implements Serializable

Serialized Fields

_extensionName

java.lang.String _extensionName
The name of the extension defining the sort algorithm (from the sort extension description).


_ascending

java.lang.Boolean _ascending
Indicates whether the sort algorithm should be applied in ascending or descending order.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.SystemReleaseDetail extends java.lang.Object implements Serializable

Serialized Fields

_entityVersionsList

java.util.List<E> _entityVersionsList
The set of applicable entity versions associated with this release


Package org.LexGrid.LexBIG.DataModel.InterfaceElements.types

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.ProcessState extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.

Class org.LexGrid.LexBIG.DataModel.InterfaceElements.types.SortContext extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.


Package org.LexGrid.LexBIG.DataModel.NCIHistory

Class org.LexGrid.LexBIG.DataModel.NCIHistory.NCIChangeEvent extends java.lang.Object implements Serializable

Serialized Fields

_editaction

ChangeType _editaction
The activity being recorded (create, modify, split, merge, retire)


_conceptcode

java.lang.String _conceptcode
The unique, permanent, alphanumeric identifier of the concept


_conceptName

java.lang.String _conceptName
The current text name of the concept. Typed as conceptCode because it serves that function.


_editDate

java.util.Date _editDate
The editDate of the change event.


_referencecode

java.lang.String _referencecode
The identifier for a concept affected by or influencing the action, as detailed below


_referencename

java.lang.String _referencename
The current text name of the reference concept in all cases except concept name changes. For these, the referencename is the old name of the current concept. Reference codes are recorded in the following circumstances: Merges - In a merge, two concepts are merged into one. One of the two concepts survives and the other concept is retired. A merge history record is written for both of the concepts with a reference code of the surviving concept and a retire record is written for the concept that retires. In the case of A merging with B and A surviving, the history will appear as follows: C11111|A|merge|dd-mon-yy|C11111|A C22222|B|merge|dd-mon-yy|C11111|A C22222|B|retire|dd-mon-yy|(null)|(null) Splits - In a split, a single concept is split into two. The original concept survives and a new concept is generated. Two split records are written for the original concept with reference codes for the resulting concepts and a create history record is written for the new concept. In the case of A being split into A and B the history will appear as follows: C22222|B|create|dd-mon-yy|(null)|(null) C11111|A|split|dd-mon-yy|C22222|B C11111|A|split|dd-mon-yy|C11111|A Retires - In a retirement the concept is moved from it's old location in the tree hierarchy into the Retired_Kind. A retire record is written for the retiring concept with a reference code of the old superconcept. If a concept has multiple superconcepts, then a retire record is written for each reference. In the case of retiring concept A which has two superconcepts (B and C), the history will appear as follows: C11111|A|retire|dd-mon-yy|C22222|B C11111|A|retire|dd-mon-yy|C33333|C Concept Name Changes - When a history record is written, the current name of the concept is recorded in the history. We can match the conceptcode from the current Thesaurus against the conceptcodes in the history to determine if any conceptnames have changed. In the case of concept A having it's name changed to B, the history will appear as follows: C11111|B|modify|dd-mon-yy|(null)|A


Package org.LexGrid.LexBIG.DataModel.NCIHistory.types

Class org.LexGrid.LexBIG.DataModel.NCIHistory.types.ChangeType extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.


Package org.LexGrid.LexBIG.Exceptions

Class org.LexGrid.LexBIG.Exceptions.LBException extends java.lang.Exception implements Serializable

serialVersionUID: -7544914453590815080L

Class org.LexGrid.LexBIG.Exceptions.LBInvocationException extends LBException implements Serializable

serialVersionUID: 3030886891325779414L

Serialized Fields

logId

java.lang.String logId

Class org.LexGrid.LexBIG.Exceptions.LBParameterException extends LBException implements Serializable

serialVersionUID: 5108177540505924442L

Serialized Fields

parameterName

java.lang.String parameterName

parameterValue

java.lang.String parameterValue

Class org.LexGrid.LexBIG.Exceptions.LBResourceUnavailableException extends LBException implements Serializable

serialVersionUID: -690663064337397771L

Class org.LexGrid.LexBIG.Exceptions.LBRuntimeException extends java.lang.RuntimeException implements Serializable

serialVersionUID: 4347639326985296334L

Class org.LexGrid.LexBIG.Exceptions.LBUnsupportedOperationException extends LBInvocationException implements Serializable

serialVersionUID: -7716954955982025288L


Package org.LexGrid.LexBIG.Extensions

Package org.LexGrid.LexBIG.Extensions.Export

Package org.LexGrid.LexBIG.Extensions.Generic

Package org.LexGrid.LexBIG.Extensions.Index

Package org.LexGrid.LexBIG.Extensions.Load

Package org.LexGrid.LexBIG.Extensions.Query

Package org.LexGrid.LexBIG.History

Package org.LexGrid.LexBIG.LexBIGService

Package org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.HL7LoadPreferences.HL7LoaderPreferences extends LoaderPreferences implements Serializable

Serialized Fields

_XMLMetadataFilePath

java.lang.String _XMLMetadataFilePath
The HL7 RIM database contains a compilation of several individual sources (e.g. ActClass, ActRole). Each source represents, in essence, a unique code system However, the LexBIG HL7 loader is designed to load all RIM codes to a single LexGrid coding scheme for convenient load and query. Since there is only one coding scheme, metadata for individual RIM sources must be stored separately. The loader solves this issue by storing the information to auxiliary metadata associated with the primary coding scheme. The auxiliary metadata complies with the LexGrid CodingSchemes model definition, with each RIM source represented by an individual CodingScheme and using standard LexGrid properties to describe the additional meta-information provided by the RIM. As a convenience to the administrator, the auxiliary metadata generated by the loader can optionally be written to a specific file in the local file system. This preference is used to specify the location of the reference file. If this preference is absent, auxiliary metadata is still generated and assigned to the primary coding scheme but a temp file is used. If specified and the file already exists, it is overwritten. If specified and the file does not exist, it is created by the loader.


Package org.LexGrid.LexBIG.Preferences.loader.LoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.LoadPreferences.LoaderPreferences extends java.lang.Object implements Serializable

Serialized Fields

_XMLMetadataFilePath

java.lang.String _XMLMetadataFilePath
Any xml document can be assigned as metadata to a newly loaded coding scheme. The xml document is broken down into individual tags and values, which are then searchable through the LexBIG Service Metadata interface. This parameter indicates the path of xml metadata assigned during the current load operation. For most loaders, the given path serves strictly as an option to input user-specified data. For some loaders, such as the HL7 loader and NCI Metathesaurus loader, metadata is automatically generated and assigned to the coding scheme. In these cases, the generated xml will be output to the given file, overwriting any existing content .


Package org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.MetaLoadPreferences.MetaLoaderPreferences extends LoaderPreferences implements Serializable

Serialized Fields

_XMLMetadataFilePath

java.lang.String _XMLMetadataFilePath
The Metathesaurus distribution contains a compilation of several individual sources (e.g. ICD9, MeSH). Each source represents, in essence, a unique code system However, the LexBIG Meta loader is designed to load all Metathesaurus codes to a single LexGrid coding scheme for convenient load and query. Since there is only one coding scheme, metadata for individual sources must be stored separately. The loader solves this issue by storing the information to auxiliary metadata associated with the primary coding scheme. The auxiliary metadata complies with the LexGrid CodingSchemes model definition, with each Metathesaurus source represented by an individual CodingScheme and using standard LexGrid properties to describe the additional meta-information provided by NIH. As a convenience to the administrator, the auxiliary metadata generated by the loader can optionally be written to a specified file in the local file system. This preference is used to specify the location of the reference file. If this preference is absent, auxiliary metadata is still generated and assigned to the primary coding scheme but a temp file is used If specified and the file already exists, it is overwritten. If specified and the file does not exist, it is created by the loader.


Package org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.OBOLoadPreferences.OBOLoaderPreferences extends LoaderPreferences implements Serializable


Package org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.OWLLoaderPreferences extends LoaderPreferences implements Serializable

Serialized Fields

_propnamePrimitive

java.lang.String _propnamePrimitive
Entities can be assigned a property that indicates whether or not it is considered primitive (having no equivalent classes). This preference controls the name of the property that is created; the property value will indicate true or false. If not specified, the name 'primitive' is assumed.


_propnameType

java.lang.String _propnameType
Anonymous OWL classes of type OWLNAryLogicalClass can be assigned properties that indicate the nature or type of component logical operations. This preference controls the name of the property that is created; the property value will indicate the logical operation (e.g. owl:oneOf). If not specified, the name 'type' is assumed.


_matchConceptCode

java.lang.String _matchConceptCode
This preference allows for entity codes to be derived from a specific RDF property. The provided string is interpreted as a regular expression to be compared against properties assigned to each processed class. If a property name matches the regular expression, the property value is assigned as the entity code. If not specified no default match is assumed, and the entity code is derived from the RDF resource name.


_matchConceptStatus

java.lang.String _matchConceptStatus
This preference allows for entity status to be derived from a specific RDF property. The provided string is interpreted as a regular expression to be compared against properties assigned to each processed class. If a property name matches the regular expression, the property value is assigned as the entity status. If not specified, the regular expression of ('concept_status') is assumed, and if not matched no status string is assigned (the isActive boolean flag will still be set based on deprecation).


_matchNoopNamespaces

java.lang.String _matchNoopNamespaces
This preference allows for classes to be selectively ignored on import to LexGrid. The provided string is interpreted as a regular expression to be compared against class namespace. If matched, a counterpart entity is not created in the LexGrid coding scheme. If not provided, the expression '(:|@_:|protege:|xsp:).' is assumed.


_matchRootName

java.lang.String _matchRootName
This preference allows for custom declaration of root concepts for hierarchical relationships. The provided string is interpreted as a regular expression to be compared against the resource name for each class. If matched, the node is designated as a root in the supported hierarchy metadata. If not specified, root nodes are identified by having a superclass of owl:thing.


_matchXMLRepformNames

java.lang.String _matchXMLRepformNames
If processing of complex properties is enabled (see ProcessComplexProps preference), this preference allows for identification of representational form names contained by XML fragments embedded within rdf property text. The provided string is interpreted as a regular expression and compared against the XML tags in each fragment. If not specified, the default expression '(term-group)' is assumed.


_matchXMLSourceNames

java.lang.String _matchXMLSourceNames
If processing of complex properties is enabled (see ProcessComplexProps preference), this preference allows for identification of source names contained by XML fragments embedded within rdf property text. The provided string is interpreted as a regular expression and compared against the XML tags in each fragment. If not specified, the default expression '(term-source|def-source)' is assumed.


_matchXMLTextNames

java.lang.String _matchXMLTextNames
If processing of complex properties is enabled (see ProcessComplexProps preference), this preference allows for identification of descriptive text contained by XML fragments embedded within rdf property text. The provided string is interpreted as a regular expression and compared against the XML tags in each fragment. If not specified, the default expression '(term-name|def-definition|go-term)' is assumed.


_isDBXrefSource

java.lang.Boolean _isDBXrefSource
If processing of complex properties is enabled (see ProcessComplexProps preference) and source, this preference allows for identification of ISBN cross reference information in xml element text. If not specified, the default of 'false' is assumed.


_isDBXrefRepform

java.lang.Boolean _isDBXrefRepform
If processing of complex properties is enabled (see ProcessComplexProps preference) and source, this preference allows for identification of representational form cross reference information in xml element text. If not specified, the default of 'false' is assumed.


_processComplexProps

java.lang.Boolean _processComplexProps
Indicates whether rdf property text will be evaluated to detect and process embedded XML. This is a master switch controlling whether the MatchXML and isDBXRef preferences are acknowledged. The default is false.


_strictOWLImplementation

java.lang.Boolean _strictOWLImplementation
Controls the relationship between restrictions of anonymous classes and parent concepts. If true, restrictions for anonymous classes are not connected to the parent concepts. The default is false.


_createConceptForObjectProp

java.lang.Boolean _createConceptForObjectProp
Controls whether concept entities are created for object properties defined in the OWL source. The default is false.


_datatypePropSwitch

java.lang.String _datatypePropSwitch
Controls how data type properties are converted to components of the LexGrid model. If 'association' is specified, each data type property is recorded in LexGrid as an entity-to-entity relationship. If 'conceptProperty' is specified, traditional LexGrid properties are created and assigned directly to new entities . If 'both' is specified, both entity relationships and standard LexGrid entity properties are generated. The default is 'both'.


_prioritizedCommentNames

PrioritizedCommentNames _prioritizedCommentNames
Field _prioritizedCommentNames.


_prioritizedDefinitionNames

PrioritizedDefinitionNames _prioritizedDefinitionNames
Field _prioritizedDefinitionNames.


_prioritizedPresentationNames

PrioritizedPresentationNames _prioritizedPresentationNames
Field _prioritizedPresentationNames.

Class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedCommentNames extends java.lang.Object implements Serializable

Serialized Fields

_nameList

java.util.List<E> _nameList
Indicates a list of rdf property names to be attributed special semantic significance as comments in the LexGrid model. If not specified, the default of 'DesignNote, Editor_Note, Citation, and VA_Workflow_Comment' is assumed. If not matched, only generic properties are created.

Class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedDefinitionNames extends java.lang.Object implements Serializable

Serialized Fields

_nameList

java.util.List<E> _nameList
Indicates a list of rdf property names to be attributed special semantic significance as definitions in the LexGrid model. If not specified, the default of 'DEFINITION", dDEFINITION, LONG_DEFINITION, ALT_DEFINITION, ALT_LONG_DEFINITION, and MeSH_Definition' is assumed.

Class org.LexGrid.LexBIG.Preferences.loader.OWLLoadPreferences.PrioritizedPresentationNames extends java.lang.Object implements Serializable

Serialized Fields

_nameList

java.util.List<E> _nameList
Indicates a list of rdf property names to be attributed special semantic significance as definitions in the LexGrid model. If not specified, the default of 'NCI_Preferred_Term, Preferred_Name, Display_Name, Search_Name, FULL_SYN, Synonym, VA_Print_Name, VA_National_Formulary_Name, VA_Abbreviation, VA_Dose_Form_Print_Name, VA_Trade_Name, MeSH_Name, NDFRT_Name, RxNorm_Name' is assumed.


Package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.SemNetLoaderPreferences extends LoaderPreferences implements Serializable

Serialized Fields

_inheritanceLevel

InheritanceLevelType _inheritanceLevel
The load parameter controls which inherited relationships are loaded and navigable within LexBIG. When selecting the option not to load inherited relationships, all associations are extracted from the source file SRSTR (stated relations). When loading all inherited relations, associations are extracted from the source file SRSTRE1 (classified relations). At NCI's request we provided an additional option to load only stated relations for direct subclass ('is_a') associations, but inherited relationships for all other associations. This was intended to provide similar behavior to their provision of OWL sources. Note that direct or stated relationships are always imported, regardless of the selected option.


Package org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types

Class org.LexGrid.LexBIG.Preferences.loader.SemNetLoadPreferences.types.InheritanceLevelType extends java.lang.Object implements Serializable

Serialization Methods

readResolve

private java.lang.Object readResolve()
Method readResolve. will be called during deserialization to replace the deserialized object with the correct constant instance.

Serialized Fields

type

int type
Field type.


stringValue

java.lang.String stringValue
Field stringValue.


Package org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.UMLSLoadPreferences.UMLSLoaderPreferences extends LoaderPreferences implements Serializable


Package org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences

Class org.LexGrid.LexBIG.Preferences.loader.XMLLoadPreferences.XMLLoaderPreferences extends LoaderPreferences implements Serializable


Package org.LexGrid.LexBIG.Utility

Class org.LexGrid.LexBIG.Utility.ConvenienceMethods extends java.lang.Object implements Serializable

Serialized Fields

lbcm_

LexBIGServiceConvenienceMethods lbcm_

Package org.LexGrid.LexBIG.Utility.Iterators

Package org.LexGrid.LexOnt

Class org.LexGrid.LexOnt.CodingSchemeManifest extends java.lang.Object implements Serializable

Serialized Fields

_id

java.lang.String _id
The key for the coding scheme manifest values. Normally this identifier is coding scheme's namespace.


_codingScheme

CsmfCodingSchemeName _codingScheme
An identifier for the coding scheme.


_entityDescription

CsmfEntityDescription _entityDescription
Coding scheme description text.


_formalName

CsmfFormalName _formalName
Official or published name of the coding scheme.


_codingSchemeURI

CsmfCodingSchemeURI _codingSchemeURI
Registered name of the coding scheme.


_defaultLanguage

CsmfDefaultLanguage _defaultLanguage
Local name of the language to use if not otherwise specified.


_representsVersion

CsmfVersion _representsVersion
The coding scheme version currently represented by this entity.


_localNameList

java.util.List<E> _localNameList
Name that can be used to reference the coding scheme within the context of the service.


_sourceList

java.util.List<E> _sourceList
The source or orginator of the coding scheme.


_copyright

CsmfText _copyright
Copyright notice text.


_mappings

CsmfMappings _mappings
Field _mappings.


_associationDefinitions

CsmfAssociationDefinition _associationDefinitions
Field _associationDefinitions.

Class org.LexGrid.LexOnt.CodingSchemeManifestList extends java.lang.Object implements Serializable

Serialized Fields

_entryList

java.util.List<E> _entryList
Field _entryList.

Class org.LexGrid.LexOnt.CsmfAssociationDefinition extends java.lang.Object implements Serializable

Serialized Fields

_toUpdate

java.lang.Boolean _toUpdate
If this flag is set to true, use the localId to check if the entry already exists. If it exists, update that entry with the manifest information. If the entry doesn't exist, add it. If the flag is false, use the localId to check it entry already exists. If it doesn't exist, add it. If it exists, do nothing.


_assocList

java.util.List<E> _assocList
Field _assocList.

Class org.LexGrid.LexOnt.CsmfCodingSchemeName extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfCodingSchemeURI extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfDefaultLanguage extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfEntityDescription extends EntityDescription implements Serializable

Serialized Fields

_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfFormalName extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfLocalName extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toAdd

java.lang.Boolean _toAdd
If this flag is set to true, this value will be added to the list of values (if not there already). Otherwise, this value is treated as the default value and used only if no other value is provided in the source file.

Class org.LexGrid.LexOnt.CsmfMappings extends Mappings implements Serializable

Serialized Fields

_toUpdate

java.lang.Boolean _toUpdate
If this flag is set to true, use the localId to check if the entry already exists. If it exists, update that entry with the manifest information. If the entry doesn't exist, add it. If the flag is false, use the localId to check it entry already exists. If it doesn't exist, add it. If it exists, do nothing.

Class org.LexGrid.LexOnt.CsmfSource extends Source implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toUpdate

java.lang.Boolean _toUpdate
If this flag is set to true, use the localId to check if the entry already exists. If it exists, update that entry with the manifest information. If the entry doesn't exist, add it. If the flag is false, use the localId to check it entry already exists. If it doesn't exist, add it. If it exists, do nothing.

Class org.LexGrid.LexOnt.CsmfText extends Text implements Serializable

Serialized Fields

_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.

Class org.LexGrid.LexOnt.CsmfVersion extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_toOverride

java.lang.Boolean _toOverride
If this flag is 'true', the value provided in the source file will be replaced with this one. Otherwise, this value is treated as a default value and used only if the value is not provided in the source file. The default value of this is set to 'true'.


Package org.LexGrid.naming

Class org.LexGrid.naming.Mappings extends java.lang.Object implements Serializable

Serialized Fields

_supportedAssociationList

java.util.List<E> _supportedAssociationList
An association(relation) referenced in the resource


_supportedAssociationQualifierList

java.util.List<E> _supportedAssociationQualifierList
An association qualifier referenced in the resource


_supportedCodingSchemeList

java.util.List<E> _supportedCodingSchemeList
Any coding scheme that is referenced in the resource, inclulding the containing scheme itself. Rule: There must be a supportedCodingScheme entry for each local name in the codingScheme object, with the URN set to the coding scheme registered name.


_supportedContainerList

java.util.List<E> _supportedContainerList
A relations container that appears in the resource


_supportedContextList

java.util.List<E> _supportedContextList
A context referenced in the resource


_supportedDataTypeList

java.util.List<E> _supportedDataTypeList
A data type referenced by a text element in the resource


_supportedDegreeOfFidelityList

java.util.List<E> _supportedDegreeOfFidelityList
A degree of fidelity referenced in the resource


_supportedEntityTypeList

java.util.List<E> _supportedEntityTypeList
An entityType referenced in the resource


_supportedHierarchyList

java.util.List<E> _supportedHierarchyList
Description of hierarchies used in the resource.


_supportedLanguageList

java.util.List<E> _supportedLanguageList
A language that is referenced in the resource


_supportedNamespaceList

java.util.List<E> _supportedNamespaceList
A namespace that is referenced in the resource


_supportedPropertyList

java.util.List<E> _supportedPropertyList
A property that is referenced in the resource


_supportedPropertyTypeList

java.util.List<E> _supportedPropertyTypeList
A property type that is referenced in the resource


_supportedPropertyLinkList

java.util.List<E> _supportedPropertyLinkList
A property link that is referenced in the resource


_supportedPropertyQualifierList

java.util.List<E> _supportedPropertyQualifierList
A property qualifier that is referenced in the resource


_supportedPropertyQualifierTypeList

java.util.List<E> _supportedPropertyQualifierTypeList
A property qualifier type that is referenced in the resource


_supportedRepresentationalFormList

java.util.List<E> _supportedRepresentationalFormList
A representational form that is referenced in the resource


_supportedSortOrderList

java.util.List<E> _supportedSortOrderList
A sort order that is referenced in the resource


_supportedSourceList

java.util.List<E> _supportedSourceList
A source that is referenced in the resource


_supportedSourceRoleList

java.util.List<E> _supportedSourceRoleList
A source role that is referenced in the resource


_supportedStatusList

java.util.List<E> _supportedStatusList
A status that is referenced in the resource

Class org.LexGrid.naming.SupportedAssociation extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedAssociationQualifier extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedCodingScheme extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_isImported

java.lang.Boolean _isImported
True means, one or more entities of this coding scheme is brought in when the ontology is loaded. The containing coding scheme also has its import flag set to true if it has one or more entities brought in. False means, loaded ontology has only references to this coding scheme. Default: true

Class org.LexGrid.naming.SupportedContainerName extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedContext extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedDataType extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedDegreeOfFidelity extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedEntityType extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedHierarchy extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_associationNamesList

java.util.List<E> _associationNamesList
Identifiers for hierarchical relationships available for navigation within a coding scheme


_rootCode

java.lang.String _rootCode
"@" for coding scheme that are top-down (ROOT) in hierarchy; "@@" for coding scheme that are bottom-up (TAIL) hierarchy


_isForwardNavigable

java.lang.Boolean _isForwardNavigable
"true" if coding scheme hierarchy is top-down; "false" for bottom-up

Class org.LexGrid.naming.SupportedLanguage extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedNamespace extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_equivalentCodingScheme

java.lang.String _equivalentCodingScheme
The local identifier of a supportedCodingScheme that correspondes with this namespace. In many models, the namespace used to qualify a concept code has a direct correlation to the coding scheme itself. If codingSchemeName is present, it asserts that the defining information about entryCodes in this namespace can be found in the corresponding coding scheme.

Class org.LexGrid.naming.SupportedProperty extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedPropertyLink extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedPropertyQualifier extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedPropertyQualifierType extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedPropertyType extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedRepresentationalForm extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedSortOrder extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedSource extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_assemblyRule

java.lang.String _assemblyRule
Rule for combining source-specific information such as page numbers, sections and the like with the source URL. Syntax: [ID] - names the identifier. Everythinng else is literal.

Class org.LexGrid.naming.SupportedSourceRole extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.SupportedStatus extends URIMap implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage

Class org.LexGrid.naming.URIMap extends java.lang.Object implements Serializable

Serialized Fields

_content

java.lang.String _content
internal content storage


_localId

java.lang.String _localId
An identifier that, in the context of the particular URIMap type, assigns a meaning to how that property is used. As an example, "en" might be used to identify English in the context of language.


_uri

java.lang.String _uri
A URI that identifies the intended meaning of the localId.


Package org.LexGrid.relations

Class org.LexGrid.relations.AssociatableElement extends Versionable implements Serializable

Serialized Fields

_associationInstanceId

java.lang.String _associationInstanceId
The unique identifier assigned to the particular relation, from, to triple.


_isInferred

java.lang.Boolean _isInferred
True means that this association instance isn't asserted in the scheme, but is inferred by a classifier. Default: false


_isDefining

java.lang.Boolean _isDefining
True means that this association instance is considered to be part of the definition of source entity, false means that it is an "accidental" characteristic. If omitted, this information is not known.


_usageContextList

java.util.List<E> _usageContextList
The local identifiers of the context(s) in which this association instance applies. Must match a local id of a supportedContext in the corresponding mappings section.


_associationQualificationList

java.util.List<E> _associationQualificationList
A set of qualifers that server to modify or qualify this association instance.

Class org.LexGrid.relations.Association extends Entity implements Serializable

Serialized Fields

_associationName

java.lang.String _associationName
The local identifier of the relation itself. associationName must match a local id of a supportedAssociationName in the corresponding mappings section.


_forwardName

java.lang.String _forwardName
The name or role that the "from" entity plays with respect to the "to" entry. Should be phrased in terms of the default language of the association and imply direction.


_reverseName

java.lang.String _reverseName
The name or role that the "to" entity plays with respect to the "from" entry. Should be phrased in terms of the default language of the association and imply direction.


_inverse

java.lang.String _inverse
The associationName of the inverse of this association. inverse must match a local id of a supportedAssociationName in the corresponding mappings section.


_isNavigable

java.lang.Boolean _isNavigable
True means that the reverse direction of the associaton is "navigable", meaning that it is makes sense to represent the target to source side of the association.


_isTransitive

java.lang.Boolean _isTransitive
True means that association is transitive ( r(a,b), r(b,c) -> r(a,c)). False means not transitive. If absent, transitivity is unknown or not applicable.


_isAntiTransitive

java.lang.Boolean _isAntiTransitive
True means that the association is antiTransitive ( r(a,b), r(b,c) -> not r(a,c)). False means not antitransitive. If absent, transitivity is unknown or not applicable.


_isSymmetric

java.lang.Boolean _isSymmetric
True means that association is symmetric ( r(a,b) -> r(b, a)). False means not symmetric. If absent, symmetricity is unknown or not applicable.


_isAntiSymmetric

java.lang.Boolean _isAntiSymmetric
True means that the association is antiSymmetric ( r(a,b) -> not r(b,a)) , false means not antitransitive. If absent, symmetricity is unknown or not applicable.


_isReflexive

java.lang.Boolean _isReflexive
True means that association is reflexive (for all a in domain, r(a,a) ). False means not reflexive. If absent, reflexivity is unknown or not applicable.


_isAntiReflexive

java.lang.Boolean _isAntiReflexive
TRUE means that the association is antiReflexive ( for all a in domain, not r(a,a) ), false means not antiReflexive. If absent, reflexivity is unknown or not applicable.


_isFunctional

java.lang.Boolean _isFunctional
TRUE means that the association is injective(for all a in domain, there exists exactly one b in the range such that r(a,b) ).


_isReverseFunctional

java.lang.Boolean _isReverseFunctional
TRUE means that the association is surjective (for all b in range, there exists exactly one a in range such that r(a,b) )


_sourceList

java.util.List<E> _sourceList
The "from" set of entities that appear in this relation

Class org.LexGrid.relations.AssociationData extends AssociatableElement implements Serializable

Serialized Fields

_associationDataText

Text _associationDataText
Field _associationDataText.

Class org.LexGrid.relations.AssociationQualification extends java.lang.Object implements Serializable

Serialized Fields

_associationQualifier

java.lang.String _associationQualifier
The local name of the association qualifier. codingSchemeName must match a local id of a supportedAssociationQualifier in the mappings section.


_qualifierText

Text _qualifierText
The value associated with this qualifier, if any.

Class org.LexGrid.relations.AssociationSource extends java.lang.Object implements Serializable

Serialized Fields

_sourceEntityCodeNamespace

java.lang.String _sourceEntityCodeNamespace
Local name of the namespace of the sourceEntityCode. sourceEntityCodeNamespace must match a local id of a supportedNamespace in the corresponding mappings section. If omitted, the URI of sourceEntityCode namespace is the codingSchemeURI of the containing coding scheme.


_sourceEntityCode

java.lang.String _sourceEntityCode
The entity code of the source entity.


_choiceValue

java.lang.Object _choiceValue
Internal choice value storage


_targetList

java.util.List<E> _targetList
The set of all entities that appear on the "to" (or right hand) side of a particular relation.


_targetDataList

java.util.List<E> _targetDataList
The set of data instances that appear on the "to" (or right hand) side of a particular relation.

Class org.LexGrid.relations.AssociationTarget extends AssociatableElement implements Serializable

Serialized Fields

_targetEntityCode

java.lang.String _targetEntityCode
The entity code of the target entity.


_targetEntityCodeNamespace

java.lang.String _targetEntityCodeNamespace
Local name of the namespace of the targetEntityCode. targetEntityCodeNamespace must match a local id of a supportedNamespace in the corresponding mappings section. If omitted, the URI of targetEntityCode namespace is the codingSchemeURI of the containing coding scheme.

Class org.LexGrid.relations.Relations extends Describable implements Serializable

Serialized Fields

_containerName

java.lang.String _containerName
The unique identifier of this collection. Required if there is more than one collection of relations in a coding scheme


_isNative

java.lang.Boolean _isNative
True means that this set of relations are considered native to the coding scheme itself.


_sourceList

java.util.List<E> _sourceList
The local identifiers of the source(s) of this collection. Must match a local id of a supportedSource in the corresponding mappings section.


_associationList

java.util.List<E> _associationList
The collection of relations that are represented.


Package org.LexGrid.valueDomains

Class org.LexGrid.valueDomains.CodingSchemeReference extends java.lang.Object implements Serializable

Serialized Fields

_codingScheme

java.lang.String _codingScheme
The local identifier of the coding scheme that the entity codes are drawn from . codingSchemeName must match a local id of a supportedCodingScheme in the mappings section.

Class org.LexGrid.valueDomains.DefinitionEntry extends java.lang.Object implements Serializable

Serialized Fields

_ruleOrder

java.lang.Long _ruleOrder
The unique identifier of the definition entry within the definition as well as the relative order in which this entry should be applied


_operator

DefinitionOperator _operator
How this entry is to be applied to the value domain


_choiceValue

java.lang.Object _choiceValue
Internal choice value storage


_entityReference

EntityReference _entityReference
Field _entityReference.


_valueDomainReference

ValueDomainReference _valueDomainReference
Field _valueDomainReference.


_codingSchemeReference

CodingSchemeReference _codingSchemeReference
Field _codingSchemeReference.

Class org.LexGrid.valueDomains.EntityReference extends java.lang.Object implements Serializable

Serialized Fields

_entityCode

java.lang.String _entityCode
The entity code being referenced.


_entityCodeNamespace

java.lang.String _entityCodeNamespace
Local identifier of the namespace of the entityCode. entityCodeNamespace must match a local id of a supportedNamespace in the corresponding mappings section. If omitted, the URI of the defaultCodingScheme will be used as the URI of the entity code.


_referenceAssociation

java.lang.String _referenceAssociation
The local identifier of an association that appears in the native relations collection in the default coding scheme. This association is used to describe a set of entity codes. If absent, only the entityCode itself is included in this definition.


_transitiveClosure

java.lang.Boolean _transitiveClosure
If true and referenceAssociation is supplied and referenceAssociation is defined as transitive, include all entity codes that belong to transitive closure of referenceAssociation as applied to entity code. Default: fals


_leafOnly

java.lang.Boolean _leafOnly
If true and referenceAssociation is supplied and referenceAssociation is defined as transitive, include all entity codes that are "leaves" in transitive closure of referenceAssociation as applied to entity code. Default: fals


_targetToSource

java.lang.Boolean _targetToSource
If true and referenceAssociation is supplied, navigate from entityCode as the association target to the corresponding sources. If transitiveClosure is true and the referenceAssociation is transitive, include all the ancestors in the list rather than just the direct "parents" (sources).

Class org.LexGrid.valueDomains.PickListDefinition extends VersionableAndDescribable implements Serializable

Serialized Fields

_pickListId

java.lang.String _pickListId
An identifier that uniquely names this list within the context of the collection.


_representsValueDomain

java.lang.String _representsValueDomain
The URI of the value domain definition that is represented by this pick list


_defaultEntityCodeNamespace

java.lang.String _defaultEntityCodeNamespace
Local name of the namespace to which the entry codes in this list belong. defaultEntityCodeNamespace must match a local id of a supportedNamespace in the mappings section.


_defaultLanguage

java.lang.String _defaultLanguage
The local identifier of the language that is used to generate the text of this pick list if not otherwise specified. Note that this language does NOT necessarily have any coorelation with the language of a pickListEntry itself or the language of the target user. defaultLanguage must match a local id of a supportedLanguage in the mappings section.


_defaultSortOrder

java.lang.String _defaultSortOrder
The local identifier of a sort order that is used as the default in the definition of the pick list


_completeDomain

java.lang.Boolean _completeDomain
True means that this pick list should represent all of the entries in the domain. Any active entity codes that aren't in the specific pick list entries are added to the end, using the designations identified by the defaultLanguage, defaultSortOrder and defaultPickContext. Default: false


_pickListEntryNodeList

java.util.List<E> _pickListEntryNodeList
An entry in the list


_sourceList

java.util.List<E> _sourceList
The local identifiers of the source(s) of this pick list definition. Must match a local id of a supportedSource in the corresponding mappings section.


_defaultPickContextList

java.util.List<E> _defaultPickContextList
The local identifiers of the context used in the definition of the pick list.


_properties

Properties _properties
A list of propeties used in the description of this pick list

Class org.LexGrid.valueDomains.PickListEntry extends java.lang.Object implements Serializable

Serialized Fields

_entryOrder

java.lang.Long _entryOrder
Relative order of this entry in the list. pickListEntries without a supplied order follow the all entries with an order, and the order is not defined.


_entityCode

java.lang.String _entityCode
Entity code associated with this entry.


_entityCodeNamespace

java.lang.String _entityCodeNamespace
Local identifier of the namespace of the entity code if different than the pickListDefinition defaultEntityCodeNamespace. entityCodeNamespace must match a local id of a supportedNamespace in the mappings section.


_propertyId

java.lang.String _propertyId
The property identifier associated with the entityCode and entityCodeNamespace that the pickText was derived from. If absent, the pick text can be anything. Some terminologies may have business rules requiring this attribute to be present.


_isDefault

java.lang.Boolean _isDefault
True means that this is the default entry for the supplied language and context.


_matchIfNoContext

java.lang.Boolean _matchIfNoContext
True means that this entry can be used if no contexts are supplied, even though pickContext ispresent.


_language

java.lang.String _language
The local name of the language to be used when the application/user supplies a selection language matches. If absent, this matches all languages. language must match a local id od of a supportedLanguage in the mappings section.


_pickText

java.lang.String _pickText
The text that represents this node in the pick list. Some business rules may require that this string match a presentation associated with the entityCode


_pickContextList

java.util.List<E> _pickContextList
The local identifiers of the context(s) in which this entry applies. pickContext must match a local id of a supportedContext in the mappings section

Class org.LexGrid.valueDomains.PickListEntryExclusion extends java.lang.Object implements Serializable

Serialized Fields

_entityCode

java.lang.String _entityCode
Entity code associated with this entry.


_entityCodeNamespace

java.lang.String _entityCodeNamespace
Local identifier of the namespace of the entity code if different than the pickListDefinition defaultEntityCodeNamespace. entityCodeNamespace must match a local id of a supportedNamespace in the mappings section.

Class org.LexGrid.valueDomains.PickListEntryNode extends Versionable implements Serializable

Serialized Fields

_pickListEntryId

java.lang.String _pickListEntryId
Unique identifier of this node within the list.


_pickListEntryNodeChoice

PickListEntryNodeChoice _pickListEntryNodeChoice
Field _pickListEntryNodeChoice.


_properties

Properties _properties
Additional properties associated with this particular entry node

Class org.LexGrid.valueDomains.PickListEntryNodeChoice extends java.lang.Object implements Serializable

Serialized Fields

_exclusionEntry

PickListEntryExclusion _exclusionEntry
Field _exclusionEntry.


_inclusionEntry

PickListEntry _inclusionEntry
Field _inclusionEntry.

Class org.LexGrid.valueDomains.PickLists extends java.lang.Object implements Serializable

Serialized Fields

_mappings

Mappings _mappings
The local names and corresponding URIs used in this collectio


_pickListDefinitionList

java.util.List<E> _pickListDefinitionList
A pick list definition

Class org.LexGrid.valueDomains.ValueDomainDefinition extends VersionableAndDescribable implements Serializable

Serialized Fields

_valueDomainURI

java.lang.String _valueDomainURI
The URI of this value domain.


_valueDomainName

java.lang.String _valueDomainName
The name of this domain, if any.


_defaultCodingScheme

java.lang.String _defaultCodingScheme
Local name of the primary coding scheme from which the domain is drawn. defaultCodingScheme must match a local id of a supportedCodingScheme in the mappings section.


_sourceList

java.util.List<E> _sourceList
The local identifiers of the source(s) of this property. Must match a local id of a supportedSource in the corresponding mappings section.


_representsRealmOrContextList

java.util.List<E> _representsRealmOrContextList
The local identifiers of the context(s) in which this value domain applies. Must match a local id of a supportedContext in the corresponding mappings section.


_properties

Properties _properties
A list of propeties used in the description of this value domain.


_definitionEntryList

java.util.List<E> _definitionEntryList
A portion of the value domain definition. Definition entries are ordered.

Class org.LexGrid.valueDomains.ValueDomainReference extends java.lang.Object implements Serializable

Serialized Fields

_valueDomainURI

java.lang.String _valueDomainURI
The URI of the value domain to apply the operator to. This value domain may be contained within the local service or may need to be resolved externally.

Class org.LexGrid.valueDomains.ValueDomains extends java.lang.Object implements Serializable

Serialized Fields

_mappings

Mappings _mappings
The local names and corresponding URIs used in this collectio


_valueDomainDefinitionList

java.util.List<E> _valueDomainDefinitionList
A value domain definition


Package org.LexGrid.versions

Class org.LexGrid.versions.ChangedEntry extends java.lang.Object implements Serializable

Serialized Fields

_choiceValue

java.lang.Object _choiceValue
Internal choice value storage


_changedCodingSchemeEntry

CodingScheme _changedCodingSchemeEntry
Field _changedCodingSchemeEntry.


_changedPickListEntry

PickListDefinition _changedPickListEntry
Field _changedPickListEntry.

Class org.LexGrid.versions.CodingSchemeVersion extends EntityVersion implements Serializable

Class org.LexGrid.versions.EditHistory extends java.lang.Object implements Serializable

Serialized Fields

_revisionList

java.util.List<E> _revisionList
Field _revisionList.

Class org.LexGrid.versions.EntityVersion extends Describable implements Serializable

Serialized Fields

_isComplete

java.lang.Boolean _isComplete
If true, this entity represents a complete copy of the particular release. If false, it only carries a delta.


_version

java.lang.String _version
The unique version identifier.


_versionOrder

java.lang.Long _versionOrder
The relative order of this version within the surrounding container.


_versionDate

java.util.Date _versionDate
The end date for which this version is operative (considered commited).


_effectiveDate

java.util.Date _effectiveDate
The start date for which this version is operative (considered active).


_releaseURN

java.lang.String _releaseURN
URN of the release from which this version is drawn.


_changeDocumentation

Text _changeDocumentation
User documentation about this particular change. Format is coding scheme specific.


_changeInstructions

Text _changeInstructions
Formal or semi-formal instructions on how to apply this change.

Class org.LexGrid.versions.EntryState extends java.lang.Object implements Serializable

Serialized Fields

_containingRevision

java.lang.String _containingRevision
The revision that contains this particular entry state change


_relativeOrder

java.lang.Long _relativeOrder
The relative order that this state change should be applied within the context of the containing revision.


_changeType

ChangeType _changeType
The type of change that occurred between this state and the previous.


_prevRevision

java.lang.String _prevRevision
The unique identifir of the state of this entry was at prior to this change.

Class org.LexGrid.versions.Revision extends Describable implements Serializable

Serialized Fields

_revisionId

java.lang.String _revisionId
The unique identifier of this revision.


_revisionDate

java.util.Date _revisionDate
The end date for which this version is operative (considered commited).


_editOrder

java.lang.Long _editOrder
The relative order that this revision is to be applied if in a systemRelease.


_changeAgentList

java.util.List<E> _changeAgentList
The local identifiers of the source(s) that participated in this particular change. changeAgent must match a local id of a supportedSource in the corresponding mappings section.


_changeInstructions

Text _changeInstructions
A human or machine readable set of instructions on how to apply this change


_changedEntryList

java.util.List<E> _changedEntryList
An ordered list of top level versionable elements.

Class org.LexGrid.versions.SystemRelease extends Describable implements Serializable

Serialized Fields

_releaseId

java.lang.String _releaseId
The label assigned to this release by the release agency.


_releaseURI

java.lang.String _releaseURI
The official URI of this release


_releaseDate

java.util.Date _releaseDate
The official release data and time of this release.


_releaseAgency

java.lang.String _releaseAgency
The URI of the agency responsible for this release


_basedOnRelease

java.lang.String _basedOnRelease
The URI of the release that logically preceeds this release


_codingSchemes

CodingSchemes _codingSchemes
A collection of coding schemes that are included in this release. Each entry in this collection is a complete representation of a coding scheme at a given revision.


_valueDomains

ValueDomains _valueDomains
A collection of value domain definitions that are included in this release.


_pickLists

PickLists _pickLists
A collection of pick list definitions that are included in this release. Each entry in this collection is a complete representation of a pick list definition at a given revision.


_editHistory

EditHistory _editHistory
An ordered collection of revisions that describe the transformations that were applied to create this release


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