Package org.LexGrid.LexBIG.admin

Class Summary
ActivateScheme Activates a coding scheme based on unique URN and version.
CodingSchemeSelectionMenu Helper class used to display a list of available code systems and return the user selection.
DeactivateScheme Deactivates a coding scheme based on unique URN and version.
ExportLgXML Exports content from the repository to a file in the LexGrid cononical XML format.
ExportOBO Exports content from the repository to a file in the Open Biomedical Ontologies (OBO) format.
ListExtensions List registered extensions to the LexBIG runtime.
ListSchemes List all currently registered vocabularies.
LoadHL7RIM Converts an HL7 RIM MS Access database to a LexGrid database Example: java org.LexGrid.LexBIG.admin.LoadHL7RIM -in,--input <uri> URI or path specifying location of the source file -mf,--manifest <uri> URI or path specifying location of the manifest file -lp,--load preferences <uri> URI or path specifying location of the load preferences file -v, --validate <int> Perform validation of the candidate resource without loading data.
LoadLgXML Imports the source file, provided in LexGrid canonical format, to the LexBIG repository.
LoadManifest Load manifest data onto the codingscheme based on unique URN and version.
LoadMetadata Loads optional XML-based metadata to be associated with an existing coding scheme.
LoadMrMap  
LoadNCIHistory Imports NCI History data to the LexBIG repository.
LoadOBO Imports a file specified in the Open Biomedical Ontologies (OBO) format to the LexBIG repository.
LoadOWL Imports from an OWL-based XML file to the LexBIG repository.
LoadRadLexProtegeFrames Imports from an FMA database to a LexBIG repository. require that the pprj file be configured with database URN, username, password for an FMA MySQL based database The FMA.pprj file and MySQL dump file are available at http://sig.biostr.washington.edu/projects/fm/ upon registration.
LoadUMLSHistory Loads UMLS History Example: java org.LexGrid.LexBIG.admin.LoadOWL -in,--input <uri> URI or path specifying location of the source file -v, --validate <int> Perform validation of the candidate resource without loading data.
LoadUMLSSemnet Loads the UMLS Semantic Network, provided as a collection of files in a single directory.
PasswordEncryptor  
RebuildIndex Rebuilds indexes associated with the specified coding scheme.
RemoveIndex Clears an optional named index associated with the specified coding scheme.
RemoveMetadata Clears optionally loaded metadata associated with the specified coding scheme.
RemoveScheme Removes a coding scheme based on unique URN and version.
SupplementScheme Utility to register, unregister, and list Coding Scheme Supplements usage: SupplementScheme [-parentUri parentUri] [-r] [-supplementUri supplementUri] [-parentVersion parentVersion] [-l] [-supplementVersion supplementVersion] [-u] -l,--list List Supplements -parentUri Parent URI.
TagScheme Associates a tag ID (e.g.
TransferScheme Assists in transferring a terminology from one server to another.
Util Common utility functions required by admin tasks.
 


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