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java.lang.Objectedu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode
edu.mayo.informatics.lexgrid.convert.directConversions.UMLSToSQL
public class UMLSToSQL
A tool to load the LexGrid SQL table from UMLS.
Nested Class Summary |
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Nested classes/interfaces inherited from class edu.mayo.informatics.lexgrid.convert.directConversions.UmlsCommon.UMLSBaseCode |
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UMLSBaseCode.Association, UMLSBaseCode.AssociationQualification, UMLSBaseCode.AssociationSorter, UMLSBaseCode.CodeHolder, UMLSBaseCode.ConceptPresentation, UMLSBaseCode.ConceptPresentationSorter, UMLSBaseCode.SABString |
Field Summary |
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Constructor Summary | |
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UMLSToSQL(java.lang.String sqlServer,
java.lang.String sqlDriver,
java.lang.String sqlUserName,
java.lang.String sqlPassword,
java.lang.String sqlTablePrefix,
java.lang.String umlsServer,
java.lang.String umlsDriver,
java.lang.String umlsUserName,
java.lang.String umlsPassword,
java.lang.String codingScheme,
LoaderPreferences loadPrefs,
java.net.URI manifestLocation,
boolean enforceIntegrity,
LgMessageDirectorIF director)
Class to convert from UMLS to SQL. |
Method Summary | |
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protected void |
buildRootNodes(java.lang.String codingSchemeName)
Build navigable relations from special endpoint nodes '@' and '@@' to first level nodes in hierarchical associations. |
java.lang.String |
getLoadedCodingSchemeName()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public UMLSToSQL(java.lang.String sqlServer, java.lang.String sqlDriver, java.lang.String sqlUserName, java.lang.String sqlPassword, java.lang.String sqlTablePrefix, java.lang.String umlsServer, java.lang.String umlsDriver, java.lang.String umlsUserName, java.lang.String umlsPassword, java.lang.String codingScheme, LoaderPreferences loadPrefs, java.net.URI manifestLocation, boolean enforceIntegrity, LgMessageDirectorIF director) throws java.lang.Exception
sqlServer
- location of SQL serversqlDriver
- SQL driver classsqlUserName
- username for server authenticationsqlPassword
- password for server authenticationsqlTablePrefix
- table prefix to use for generated filesumlsServer
- location of UMLS serverumlsDriver
- UMLS driver classumlsUserName
- username for server authenticationumlsPassword
- password for server authenticationcodingScheme
- CodingScheme to be convertedloadPrefs
- Loader PreferencesmanifestLocation
- location of Manifest fileenforceIntegrity
- enforce foreign key constraints on tablesdirector
- message director for log output
java.lang.Exception
Method Detail |
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public java.lang.String getLoadedCodingSchemeName()
protected void buildRootNodes(java.lang.String codingSchemeName) throws java.sql.SQLException
codingSchemeName
- The LexGrid code system name.
java.sql.SQLException
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Copyright: (c) 2004-2006 Mayo Foundation for Medical Education and Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the triple-shield Mayo logo are trademarks and service marks of MFMER. | ||||||||
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