edu.mayo.informatics.resourcereader.obo
Class OBOConstants
java.lang.Object
edu.mayo.informatics.resourcereader.core.impl.Resource
edu.mayo.informatics.resourcereader.obo.OBO
edu.mayo.informatics.resourcereader.obo.OBOConstants
- All Implemented Interfaces:
- TopResource
public class OBOConstants
- extends OBO
This file contains the OBO Constants. This file is used while parsing the obo
text file. It is also used by the programs that read the OBO content into the
EMF model.
- Version:
- subversion $Revision: $ checked in on $Date: $
- Author:
- Deepak Sharma
Fields inherited from class edu.mayo.informatics.resourcereader.obo.OBO |
logger |
Method Summary |
static boolean |
isHeaderTag(java.lang.String line)
|
static boolean |
isIgnoredTag(java.lang.String line)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DELIM
public static java.lang.String DELIM
OBO_CURRENT_FORMAT
public static final java.lang.String OBO_CURRENT_FORMAT
- See Also:
- Constant Field Values
REL_ISA
public static final java.lang.String REL_ISA
- See Also:
- Constant Field Values
REL_INTERSECTIONOF
public static final java.lang.String REL_INTERSECTIONOF
- See Also:
- Constant Field Values
REL_UNIONOF
public static final java.lang.String REL_UNIONOF
- See Also:
- Constant Field Values
REL_DISJOINTFROM
public static final java.lang.String REL_DISJOINTFROM
- See Also:
- Constant Field Values
REL_INVERSEOF
public static final java.lang.String REL_INVERSEOF
- See Also:
- Constant Field Values
REL_INSTANCEOF
public static final java.lang.String REL_INSTANCEOF
- See Also:
- Constant Field Values
REL_REPLACEDBY
public static final java.lang.String REL_REPLACEDBY
- See Also:
- Constant Field Values
OBOTYPES_TERM
public static final java.lang.String OBOTYPES_TERM
- See Also:
- Constant Field Values
OBOTYPES_TYPE
public static final java.lang.String OBOTYPES_TYPE
- See Also:
- Constant Field Values
OBOTYPES_TERMORTYPE
public static final java.lang.String OBOTYPES_TERMORTYPE
- See Also:
- Constant Field Values
OBOTYPES_INSTANCE
public static final java.lang.String OBOTYPES_INSTANCE
- See Also:
- Constant Field Values
OBODEF_TRLMODF
public static final java.lang.String OBODEF_TRLMODF
- See Also:
- Constant Field Values
TAG_FORMAT_VERSION
public static final java.lang.String TAG_FORMAT_VERSION
- See Also:
- Constant Field Values
UNASSIGNED_LABEL
public static final java.lang.String UNASSIGNED_LABEL
- See Also:
- Constant Field Values
TAG_DATAVERSION
public static final java.lang.String TAG_DATAVERSION
- See Also:
- Constant Field Values
TAG_VERSION
public static final java.lang.String TAG_VERSION
- See Also:
- Constant Field Values
TAG_DATE
public static final java.lang.String TAG_DATE
- See Also:
- Constant Field Values
TAG_SAVED_BY
public static final java.lang.String TAG_SAVED_BY
- See Also:
- Constant Field Values
TAG_AUTO_GENERATED_BY
public static final java.lang.String TAG_AUTO_GENERATED_BY
- See Also:
- Constant Field Values
TAG_SUBSETDEF
public static final java.lang.String TAG_SUBSETDEF
- See Also:
- Constant Field Values
TAG_IMPORT
public static final java.lang.String TAG_IMPORT
- See Also:
- Constant Field Values
TAG_TYPEREF
public static final java.lang.String TAG_TYPEREF
- See Also:
- Constant Field Values
TAG_SYNONYMTYPEDEF
public static final java.lang.String TAG_SYNONYMTYPEDEF
- See Also:
- Constant Field Values
TAG_IDSPACE
public static final java.lang.String TAG_IDSPACE
- See Also:
- Constant Field Values
TAG_DEFAULT_NS
public static final java.lang.String TAG_DEFAULT_NS
- See Also:
- Constant Field Values
TAG_DEFAULTRELATIONSHIPID
public static final java.lang.String TAG_DEFAULTRELATIONSHIPID
- See Also:
- Constant Field Values
TAG_IDMAPPING
public static final java.lang.String TAG_IDMAPPING
- See Also:
- Constant Field Values
TAG_REMARK
public static final java.lang.String TAG_REMARK
- See Also:
- Constant Field Values
TAG_TERM
public static final java.lang.String TAG_TERM
- See Also:
- Constant Field Values
TAG_TYPEDEF
public static final java.lang.String TAG_TYPEDEF
- See Also:
- Constant Field Values
TAG_INSTANCE
public static final java.lang.String TAG_INSTANCE
- See Also:
- Constant Field Values
TAG_ABBREVIATION
public static final java.lang.String TAG_ABBREVIATION
- See Also:
- Constant Field Values
TAG_GENERICURL
public static final java.lang.String TAG_GENERICURL
- See Also:
- Constant Field Values
TAG_SYNONYM
public static final java.lang.String TAG_SYNONYM
- See Also:
- Constant Field Values
TAG_SYNONYM_EXACT
public static final java.lang.String TAG_SYNONYM_EXACT
- See Also:
- Constant Field Values
TAG_SYNONYM_BROAD
public static final java.lang.String TAG_SYNONYM_BROAD
- See Also:
- Constant Field Values
TAG_SYNONYM_NARROW
public static final java.lang.String TAG_SYNONYM_NARROW
- See Also:
- Constant Field Values
TAG_SYNONYM_RELATED
public static final java.lang.String TAG_SYNONYM_RELATED
- See Also:
- Constant Field Values
TAG_ID
public static final java.lang.String TAG_ID
- See Also:
- Constant Field Values
TAG_ALTID
public static final java.lang.String TAG_ALTID
- See Also:
- Constant Field Values
TAG_CREATED_BY
public static final java.lang.String TAG_CREATED_BY
- See Also:
- Constant Field Values
TAG_CREATION_DATE
public static final java.lang.String TAG_CREATION_DATE
- See Also:
- Constant Field Values
TAG_NAME
public static final java.lang.String TAG_NAME
- See Also:
- Constant Field Values
TAG_DOMAIN
public static final java.lang.String TAG_DOMAIN
- See Also:
- Constant Field Values
TAG_RANGE
public static final java.lang.String TAG_RANGE
- See Also:
- Constant Field Values
TAG_NAMESPACE
public static final java.lang.String TAG_NAMESPACE
- See Also:
- Constant Field Values
TAG_ISANONYMOUS
public static final java.lang.String TAG_ISANONYMOUS
- See Also:
- Constant Field Values
TAG_ISTRANSITIVE
public static final java.lang.String TAG_ISTRANSITIVE
- See Also:
- Constant Field Values
TAG_ISSYMMETRIC
public static final java.lang.String TAG_ISSYMMETRIC
- See Also:
- Constant Field Values
TAG_ISANTISYMMETRIC
public static final java.lang.String TAG_ISANTISYMMETRIC
- See Also:
- Constant Field Values
TAG_ISREFLEXIVE
public static final java.lang.String TAG_ISREFLEXIVE
- See Also:
- Constant Field Values
TAG_ISCYCLIC
public static final java.lang.String TAG_ISCYCLIC
- See Also:
- Constant Field Values
TAG_DEF
public static final java.lang.String TAG_DEF
- See Also:
- Constant Field Values
TAG_COMMENT
public static final java.lang.String TAG_COMMENT
- See Also:
- Constant Field Values
TAG_SUBSET
public static final java.lang.String TAG_SUBSET
- See Also:
- Constant Field Values
TAG_ISA
public static final java.lang.String TAG_ISA
- See Also:
- Constant Field Values
TAG_INTERSECTIONOF
public static final java.lang.String TAG_INTERSECTIONOF
- See Also:
- Constant Field Values
TAG_UNIONOF
public static final java.lang.String TAG_UNIONOF
- See Also:
- Constant Field Values
TAG_DISJOINTFROM
public static final java.lang.String TAG_DISJOINTFROM
- See Also:
- Constant Field Values
TAG_ISOBSOLETE
public static final java.lang.String TAG_ISOBSOLETE
- See Also:
- Constant Field Values
TAG_XREF
public static final java.lang.String TAG_XREF
- See Also:
- Constant Field Values
TAG_XREFANALOG
public static final java.lang.String TAG_XREFANALOG
- See Also:
- Constant Field Values
TAG_XREFUNK
public static final java.lang.String TAG_XREFUNK
- See Also:
- Constant Field Values
TAG_RELATIONSHIP
public static final java.lang.String TAG_RELATIONSHIP
- See Also:
- Constant Field Values
TAG_INVERSEOF
public static final java.lang.String TAG_INVERSEOF
- See Also:
- Constant Field Values
TAG_INSTANCEOF
public static final java.lang.String TAG_INSTANCEOF
- See Also:
- Constant Field Values
TAG_REPLACEDBY
public static final java.lang.String TAG_REPLACEDBY
- See Also:
- Constant Field Values
TAG_CONSIDER
public static final java.lang.String TAG_CONSIDER
- See Also:
- Constant Field Values
TAG_USETERM
public static final java.lang.String TAG_USETERM
- See Also:
- Constant Field Values
TAG_PROPERTYVALUE
public static final java.lang.String TAG_PROPERTYVALUE
- See Also:
- Constant Field Values
HTTP
public static final java.lang.String HTTP
- See Also:
- Constant Field Values
START_TM
public static final java.lang.String START_TM
- See Also:
- Constant Field Values
END_TM
public static final java.lang.String END_TM
- See Also:
- Constant Field Values
ABBREVIATION_CTX
public static final int ABBREVIATION_CTX
- See Also:
- Constant Field Values
TERM_CTX
public static final int TERM_CTX
- See Also:
- Constant Field Values
RELATION_CTX
public static final int RELATION_CTX
- See Also:
- Constant Field Values
INSTANCE_CTX
public static final int INSTANCE_CTX
- See Also:
- Constant Field Values
BLTNREL_ISA_ID
public static final java.lang.String BLTNREL_ISA_ID
- See Also:
- Constant Field Values
BLTNREL_ISA_NAME
public static final java.lang.String BLTNREL_ISA_NAME
- See Also:
- Constant Field Values
BLTNREL_ISA_DOMAIN
public static final java.lang.String BLTNREL_ISA_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_ISA_RANGE
public static final java.lang.String BLTNREL_ISA_RANGE
- See Also:
- Constant Field Values
BLTNREL_ISA_DEF
public static final java.lang.String BLTNREL_ISA_DEF
- See Also:
- Constant Field Values
BLTNREL_ISA_DEFSRC
public static final java.lang.String BLTNREL_ISA_DEFSRC
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_ID
public static final java.lang.String BLTNREL_DISJFROM_ID
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_NAME
public static final java.lang.String BLTNREL_DISJFROM_NAME
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_DOMAIN
public static final java.lang.String BLTNREL_DISJFROM_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_RANGE
public static final java.lang.String BLTNREL_DISJFROM_RANGE
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_DEF
public static final java.lang.String BLTNREL_DISJFROM_DEF
- See Also:
- Constant Field Values
BLTNREL_DISJFROM_DEFSRC
public static final java.lang.String BLTNREL_DISJFROM_DEFSRC
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_ID
public static final java.lang.String BLTNREL_UNIONOF_ID
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_NAME
public static final java.lang.String BLTNREL_UNIONOF_NAME
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_DOMAIN
public static final java.lang.String BLTNREL_UNIONOF_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_RANGE
public static final java.lang.String BLTNREL_UNIONOF_RANGE
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_DEF
public static final java.lang.String BLTNREL_UNIONOF_DEF
- See Also:
- Constant Field Values
BLTNREL_UNIONOF_DEFSRC
public static final java.lang.String BLTNREL_UNIONOF_DEFSRC
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_ID
public static final java.lang.String BLTNREL_INTRSECOF_ID
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_NAME
public static final java.lang.String BLTNREL_INTRSECOF_NAME
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_DOMAIN
public static final java.lang.String BLTNREL_INTRSECOF_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_RANGE
public static final java.lang.String BLTNREL_INTRSECOF_RANGE
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_DEF
public static final java.lang.String BLTNREL_INTRSECOF_DEF
- See Also:
- Constant Field Values
BLTNREL_INTRSECOF_DEFSRC
public static final java.lang.String BLTNREL_INTRSECOF_DEFSRC
- See Also:
- Constant Field Values
BLTNREL_INSTOF_ID
public static final java.lang.String BLTNREL_INSTOF_ID
- See Also:
- Constant Field Values
BLTNREL_INSTOF_NAME
public static final java.lang.String BLTNREL_INSTOF_NAME
- See Also:
- Constant Field Values
BLTNREL_INSTOF_DOMAIN
public static final java.lang.String BLTNREL_INSTOF_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_INSTOF_RANGE
public static final java.lang.String BLTNREL_INSTOF_RANGE
- See Also:
- Constant Field Values
BLTNREL_INSTOF_DEF
public static final java.lang.String BLTNREL_INSTOF_DEF
- See Also:
- Constant Field Values
BLTNREL_INSTOF_DEFSRC
public static final java.lang.String BLTNREL_INSTOF_DEFSRC
- See Also:
- Constant Field Values
BLTNREL_INVOF_ID
public static final java.lang.String BLTNREL_INVOF_ID
- See Also:
- Constant Field Values
BLTNREL_INVOF_NAME
public static final java.lang.String BLTNREL_INVOF_NAME
- See Also:
- Constant Field Values
BLTNREL_INVOF_DOMAIN
public static final java.lang.String BLTNREL_INVOF_DOMAIN
- See Also:
- Constant Field Values
BLTNREL_INVOF_RANGE
public static final java.lang.String BLTNREL_INVOF_RANGE
- See Also:
- Constant Field Values
BLTNREL_INVOF_DEF
public static final java.lang.String BLTNREL_INVOF_DEF
- See Also:
- Constant Field Values
BLTNREL_INVOF_DEFSRC
public static final java.lang.String BLTNREL_INVOF_DEFSRC
- See Also:
- Constant Field Values
TAG_IGNORE_DATABASE
public static final java.lang.String TAG_IGNORE_DATABASE
- See Also:
- Constant Field Values
TAG_IGNORE_OBJECT
public static final java.lang.String TAG_IGNORE_OBJECT
- See Also:
- Constant Field Values
TAG_IGNORE_EXAMPLE
public static final java.lang.String TAG_IGNORE_EXAMPLE
- See Also:
- Constant Field Values
TAG_IGNORE_BUILTIN
public static final java.lang.String TAG_IGNORE_BUILTIN
- See Also:
- Constant Field Values
TAG_IGNORE_URLSNTX
public static final java.lang.String TAG_IGNORE_URLSNTX
- See Also:
- Constant Field Values
TAG_IGNORE_SHORTHNDNAME
public static final java.lang.String TAG_IGNORE_SHORTHNDNAME
- See Also:
- Constant Field Values
TAG_IGNORE_URLEXMPL
public static final java.lang.String TAG_IGNORE_URLEXMPL
- See Also:
- Constant Field Values
TAG_IGNORE_EXMPLID
public static final java.lang.String TAG_IGNORE_EXMPLID
- See Also:
- Constant Field Values
TAG_IGNORE_NSIDRULE
public static final java.lang.String TAG_IGNORE_NSIDRULE
- See Also:
- Constant Field Values
OBOConstants
public OBOConstants()
isHeaderTag
public static boolean isHeaderTag(java.lang.String line)
isIgnoredTag
public static boolean isIgnoredTag(java.lang.String line)