edu.mayo.informatics.resourcereader.obo
Class OBOTerms

java.lang.Object
  extended by edu.mayo.informatics.resourcereader.core.impl.Resource
      extended by edu.mayo.informatics.resourcereader.obo.OBO
          extended by edu.mayo.informatics.resourcereader.obo.OBOCollection
              extended by edu.mayo.informatics.resourcereader.obo.OBOTerms
All Implemented Interfaces:
ResourceCollection, TopResource

public class OBOTerms
extends OBOCollection

The class stores informatiom about the list of OBO Terms

Version:
subversion $Revision: $ checked in on $Date: $
Author:
Deepak Sharma, Pradip Kanjamala

Field Summary
 
Fields inherited from class edu.mayo.informatics.resourcereader.obo.OBO
logger
 
Constructor Summary
OBOTerms(CachingMessageDirectorIF rLogger)
           
 
Method Summary
 void addMember(ResourceEntity termp)
           
 java.util.Collection<OBOTerm> getAllMembers()
           
 OBOTerm getMemberById(java.lang.String id)
           
 long getMembersCount()
           
 java.util.TreeSet<java.lang.String> getNameSpaceSet()
           
 java.lang.String getTermPrefix()
           
 java.lang.String toString()
           
 
Methods inherited from class edu.mayo.informatics.resourcereader.obo.OBOCollection
getMemberByName, getMemberByProperty, init
 
Methods inherited from class edu.mayo.informatics.resourcereader.core.impl.Resource
getLogger, setLogger
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

OBOTerms

public OBOTerms(CachingMessageDirectorIF rLogger)
Method Detail

addMember

public void addMember(ResourceEntity termp)
               throws ResourceException
Specified by:
addMember in interface ResourceCollection
Overrides:
addMember in class OBOCollection
Throws:
ResourceException

getMemberById

public OBOTerm getMemberById(java.lang.String id)
                      throws ResourceException
Specified by:
getMemberById in interface ResourceCollection
Overrides:
getMemberById in class OBOCollection
Throws:
ResourceException

getAllMembers

public java.util.Collection<OBOTerm> getAllMembers()
Specified by:
getAllMembers in interface ResourceCollection
Overrides:
getAllMembers in class OBOCollection

getMembersCount

public long getMembersCount()
Specified by:
getMembersCount in interface ResourceCollection
Overrides:
getMembersCount in class OBOCollection

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

getTermPrefix

public java.lang.String getTermPrefix()

getNameSpaceSet

public java.util.TreeSet<java.lang.String> getNameSpaceSet()

Copyright: (c) 2004-2006 Mayo Foundation for Medical Education and Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the triple-shield Mayo logo are trademarks and service marks of MFMER.