Class Summary |
ActivateScheme |
Activates a coding scheme based on unique URN and version. |
CodingSchemeSelectionMenu |
Helper class used to display a list of available code systems and return the
user selection. |
DeactivateScheme |
Deactivates a coding scheme based on unique URN and version. |
ExportLgXML |
Exports content from the repository to a file in the LexGrid cononical XML
format. |
ExportOBO |
Exports content from the repository to a file in the Open Biomedical
Ontologies (OBO) format. |
ListExtensions |
List registered extensions to the LexBIG runtime. |
ListSchemes |
List all currently registered vocabularies. |
LoadHL7RIM |
Converts an HL7 RIM MS Access database to a LexGrid database
Example: java org.LexGrid.LexBIG.admin.LoadHL7RIM
-in,--input <uri> URI or path specifying location of the source file
-mf,--manifest <uri> URI or path specifying location of the manifest file
-lp,--load preferences <uri> URI or path specifying location of the load preferences file
-v, --validate <int> Perform validation of the candidate
resource without loading data. |
LoadLgXML |
Imports the source file, provided in LexGrid canonical format, to the LexBIG
repository. |
LoadManifest |
Load manifest data onto the codingscheme based on unique URN and version. |
LoadMetadata |
Loads optional XML-based metadata to be associated with an existing coding
scheme. |
LoadMrMap |
|
LoadNCIHistory |
Imports NCI History data to the LexBIG repository. |
LoadOBO |
Imports a file specified in the Open Biomedical Ontologies (OBO) format to
the LexBIG repository. |
LoadOWL |
Imports from an OWL-based XML file to the LexBIG repository. |
LoadRadLexProtegeFrames |
Imports from an FMA database to a LexBIG repository. require that the pprj
file be configured with database URN, username, password for an FMA MySQL
based database The FMA.pprj file and MySQL dump file are available at
http://sig.biostr.washington.edu/projects/fm/ upon registration. |
LoadUMLSHistory |
Loads UMLS History
Example: java org.LexGrid.LexBIG.admin.LoadOWL
-in,--input <uri> URI or path specifying location of the source file
-v, --validate <int> Perform validation of the candidate
resource without loading data. |
LoadUMLSSemnet |
Loads the UMLS Semantic Network, provided as a collection of files in a
single directory. |
PasswordEncryptor |
|
RebuildIndex |
Rebuilds indexes associated with the specified coding scheme. |
RemoveIndex |
Clears an optional named index associated with the specified coding scheme. |
RemoveMetadata |
Clears optionally loaded metadata associated with the specified coding
scheme. |
RemoveScheme |
Removes a coding scheme based on unique URN and version. |
SupplementScheme |
Utility to register, unregister, and list Coding Scheme Supplements
usage: SupplementScheme [-parentUri parentUri] [-r] [-supplementUri
supplementUri] [-parentVersion parentVersion] [-l] [-supplementVersion
supplementVersion] [-u]
-l,--list List Supplements
-parentUri Parent URI. |
TagScheme |
Associates a tag ID (e.g. |
TransferScheme |
Assists in transferring a terminology from one server to another. |
Util |
Common utility functions required by admin tasks. |