edu.mayo.informatics.lexgrid.convert.formats.inputFormats
Class OBO

java.lang.Object
  extended by edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
      extended by edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
          extended by edu.mayo.informatics.lexgrid.convert.formats.inputFormats.OBO
All Implemented Interfaces:
InputFormatInterface
Direct Known Subclasses:
OBOSWT

public class OBO
extends URIBase
implements InputFormatInterface

Details for reading OBO files.

Version:
subversion $Revision: 7198 $ checked in on $Date: 2008-02-15 18:08:36 +0000 (Fri, 15 Feb 2008) $
Author:
Dan Armbrust

Field Summary
static java.lang.String description
           
 
Fields inherited from class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
fileLocation
 
Fields inherited from class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
codingSchemeManifest
 
Constructor Summary
OBO()
           
OBO(java.net.URI fileLocation)
           
 
Method Summary
 java.lang.String[] getAvailableTerminologies()
           
 java.lang.String getConnectionSummary()
          Get a summary of the connection parameters.
 java.lang.String getDescription()
          Get the description of the input type.
 Option[] getOptions()
          Get the additional options that must be supplied before the reading can happen.
 java.lang.String[] getSupportedOutputFormats()
          Get the supported Output formats for this input format.
 
Methods inherited from class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.URIBase
getConnectionSummary, getFileLocation, setFileLocation, testConnection
 
Methods inherited from class edu.mayo.informatics.lexgrid.convert.formats.baseFormats.CommonBase
getCodingSchemeManifest, getLoaderPreferences, getManifestLocation, setCodingSchemeManifest, setLoaderPreferences, setManifestLocation
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface edu.mayo.informatics.lexgrid.convert.formats.InputFormatInterface
testConnection
 

Field Detail

description

public static final java.lang.String description
See Also:
Constant Field Values
Constructor Detail

OBO

public OBO(java.net.URI fileLocation)

OBO

public OBO()
Method Detail

getDescription

public java.lang.String getDescription()
Description copied from interface: InputFormatInterface
Get the description of the input type.

Specified by:
getDescription in interface InputFormatInterface
Returns:

getSupportedOutputFormats

public java.lang.String[] getSupportedOutputFormats()
Description copied from interface: InputFormatInterface
Get the supported Output formats for this input format.

Specified by:
getSupportedOutputFormats in interface InputFormatInterface
Returns:

getConnectionSummary

public java.lang.String getConnectionSummary()
Description copied from interface: InputFormatInterface
Get a summary of the connection parameters.

Specified by:
getConnectionSummary in interface InputFormatInterface
Returns:
the summary.

getOptions

public Option[] getOptions()
Description copied from interface: InputFormatInterface
Get the additional options that must be supplied before the reading can happen.

Specified by:
getOptions in interface InputFormatInterface
Returns:

getAvailableTerminologies

public java.lang.String[] getAvailableTerminologies()
Specified by:
getAvailableTerminologies in interface InputFormatInterface

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