edu.mayo.informatics.resourcereader.obo
Class OBOContents

java.lang.Object
  extended by edu.mayo.informatics.resourcereader.core.impl.Resource
      extended by edu.mayo.informatics.resourcereader.obo.OBO
          extended by edu.mayo.informatics.resourcereader.obo.OBOContents
All Implemented Interfaces:
ResourceContents, TopResource

public class OBOContents
extends OBO
implements ResourceContents

The class that is used to store the OBO Contents

Version:
subversion $Revision: $ checked in on $Date: $
Author:
Deepak Sharma, Pradip Kanjamala

Field Summary
 
Fields inherited from class edu.mayo.informatics.resourcereader.obo.OBO
logger
 
Constructor Summary
OBOContents(CachingMessageDirectorIF rLogger)
           
 
Method Summary
 java.util.Collection<OBOTerm> getConcepts()
          The function returns a Collection of OBOTerm
 java.util.Collection<OBOInstance> getInstances()
          The function returns a Collection of OBOInstance
 OBOAbbreviations getOBOAbbreviations()
           
 OBOInstances getOBOInstances()
           
 OBORelations getOBORelations()
           
 OBOTerms getOBOTerms()
           
 java.util.Collection<OBORelation> getRelations()
          The function returns a Collection of OBORelation
 void init(CachingMessageDirectorIF rLogger)
           
 void setOBOAbbreviations(OBOAbbreviations sourceAbbreviations)
           
 void setOBOInstances(OBOInstances instances)
           
 void setOBORelations(OBORelations relations)
           
 void setOBOTerms(OBOTerms terms)
           
 java.lang.String toString()
           
 
Methods inherited from class edu.mayo.informatics.resourcereader.core.impl.Resource
getLogger, setLogger
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

OBOContents

public OBOContents(CachingMessageDirectorIF rLogger)
Method Detail

init

public void init(CachingMessageDirectorIF rLogger)

getConcepts

public java.util.Collection<OBOTerm> getConcepts()
The function returns a Collection of OBOTerm

Specified by:
getConcepts in interface ResourceContents

getRelations

public java.util.Collection<OBORelation> getRelations()
The function returns a Collection of OBORelation

Specified by:
getRelations in interface ResourceContents

getInstances

public java.util.Collection<OBOInstance> getInstances()
The function returns a Collection of OBOInstance


getOBOAbbreviations

public OBOAbbreviations getOBOAbbreviations()

setOBOAbbreviations

public void setOBOAbbreviations(OBOAbbreviations sourceAbbreviations)

getOBORelations

public OBORelations getOBORelations()

setOBORelations

public void setOBORelations(OBORelations relations)

getOBOTerms

public OBOTerms getOBOTerms()

setOBOTerms

public void setOBOTerms(OBOTerms terms)

getOBOInstances

public OBOInstances getOBOInstances()

setOBOInstances

public void setOBOInstances(OBOInstances instances)

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

Copyright: (c) 2004-2006 Mayo Foundation for Medical Education and Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the triple-shield Mayo logo are trademarks and service marks of MFMER.