Release Notes ============= #Product:# NBIA #Version:# 5.2 #Date:# November, 2013 Contents -------- 1. Introduction 2. Release History 3. Features Addressed in This Release 4. Defects Addressed in This Release 5. Known Issues/Defects 6. Bug Reports, Feature Requests, and Support 7. Documentation and Files 8. NCI CBIIT Web Pages Introduction --------------------------- The National Biomedical Imaging Archive (NBIA) provides access to in vivo images. The goal of the NBIA is to provide the cancer research community,industry, and academia with access to an imaging data archive that will assist in the development and validation of analytical software tools supporting: lesion detection and classification, accelerated diagnostic imaging decision throughput, and quantitative imaging assessment of drug response. The repository aims to provide access to imaging resources that will improve the use of imaging in today’s cancer research and practice by: increasing the efficiency and reproducibility of imaging supporting cancer detection, improving the accuracy of imaging supporting cancer diagnosis, leveraging imaging to provide an objective assessment of therapeutic response, and ultimately enabling the development of imaging resources that will lead to confident clinical decisions in patient care. * https://imaging.nci.nih.gov/ Release History ------------------------ * NBIA v5.2 -- September 2013 * NBIA v5.1 -- December 2012 * NBIA v5.0.1 -- February 2011 * NBIA v5.0 -- December 2010 * NBIA v4.5 -- September2010 * NBIA v4.4.1 -- June 2010 * NBIA v4.4 -- March 2010 * NBIA v4.3 -- October 2009 * NBIA v4.2.2 -- September2009 * NBIA v4.2.1 -- June 2009 * NBIA v4.2 -- May 2009 * NCIA v4.1 -- December 2008 * NCIA v4.0 -- October 2008 * NCIA v3.7 -- August 2008 * NCIA v3.5 -- April 2008 * NCIA v3.0 -- February 2008 * NCIA v2.4 -- November 2007 Features Addressed in This Release ---------------------------------- [NBIA-580] Add UNKNOWN for Image Type 3 Value for MR DICOM images [NBIA-413] Change documentation to wiki-based documentation [NBIA-441] Admin QC Tools need to support multiframe function [NBIA-444] Advanced search functionality within QC Tool [NBIA-445] Havvin series modality & description in QC tool [NBIA-448] External data basket empty before use [NBIA-481] Need to inform user send new file only after completely finish online deletion to avoid database deadlock happen [NBIA-505] Wildcard search for Patient ID [NBIA-517] Update DICOM File Sizes in Database. [NBIA-525] Add Modality Specific Search for MR --Work in NBIA Portal [NBIA-526] CTP DB Adapter Needs to be Expanded for MR Modality Search [NBIA-527] Needs to Reprocess the Submitted MR Files for Getting MR Specific Tags into Database [NBIA-528] Build and Installation Scripts Need to be Modified to Handle Changes for MR Specific Search [NBIA-551] Installation Wiki Should Instruct the User to Set CTP Storage Directory Outside of CTP Server. [NBIA-559] Add Modality Specific Search for CT [NBIA-629] JRE Download Link Should be the One for All Platforms [NBIA-556] Link in Edit collection description needs to directly bring out new web page. [NBIA-635] Adding Database Upgrading Procedure to Wiki [NBIA-646] Need to create links in Wiki for Downloading NBIA installation files. [NBIA-647] Previous Versions of NBIA and Cedara Links needs to be moved out of GForge. [NBIA-643] Remove the Context Help HTML Files No Longer in Use Defects from 5.1.x Addressed in This Release -------------------------------------------- [NBIA-324] CQL that targets TrialDataProvenance will not return desired result set [NBIA-396] multiple users cannot use the QC tool simultaneously [NBIA-400] Annotation Files downloaded without check box selected [NBIA-402] Annotation File replacement improperly updates database [NBIA-406] Site name should not be a searchable attribute in the Dynamic Search page [NBIA-427] Can't connect to remote MySQL database with local GUI installer [NBIA-434] """Download all items"" link doesn't work" [NBIA-438] caGrid will not work if JDK download to a directory with space in the folder's name [NBIA-452] Minimum Number of Previous Studies text [NBIA-453] "Click different ""View Cine Loop"" links will bring out same image loop if they have different images but same series number" [NBIA-474] "Click ""?"" button on search page will not bring out pop up window on firefox & IE 9 & 10. It only shows when user scroll down the screen." [NBIA-476] Click Refresh button goes to the previous loaded page [NBIA-483] NBIA link in help page bring out 400 Bad Request [NBIA-493] Process quarantining an image causes other images to also be quarantined. [NBIA-496] QC tool DICOM tag display does not show sequences [NBIA-500] Downloading Certain Series Throws MalformedChunkCodingException [NBIA-502] Not required field Organization Name on User Registration page ask user input phone number [NBIA-503] See error message when user do remote download by using download manager to download large size file [NBIA-504] FTP remote download for large size file is not working [NBIA-515] Couldn't view dicom tags from remote search on production [NBIA-516] "Select mulitple series from remote nodes and click ""Download All Items"" doesn't work correctly. " [NBIA-529] Pop up error message come out when user download non-annotated file in IE9 [NBIA-530] Previous serach result should be cleared out if user didn't select any check box and search it [NBIA-532] Missing share list when user change visibilty in QC search [NBIA-534] Couldn’t select date on classic QC Tool search page [NBIA-535] Search QC Tool by submission date is not working [NBIA-536] QC Tool Reset button can't reset QC status and Submission Date [NBIA-537] Different available collections on QC classic search and dynamic search for same user [NBIA-539] "Need to add to wiki about ""Download All Itmes"" will take very long time if caGrid is in different version" [NBIA-540] Couldn't approve deletion because the available collections are not including all of them [NBIA-541] NBIA error when user approve deletion search by date [NBIA-542] Need to use series instance uid instead of general series pk id in user received email [NBIA-546] NBIA error page shows when user search Modality MR and Sequence Variant [NBIA-547] Not allow user search null value in MR image [NBIA-548] Can't create new user via ctp console [NBIA-549] Miss spelling word Image on Dynamic search page [NBIA-552] DICOM Submission Failed Using Apache Redirected URL [NBIA-553] MR Image can't be deleted [NBIA-555] CTP: Submitting Dicom file along with bad Dicom file doesn't get submitted. [NBIA-557] Need to add on wiki about turn ProxyPreserveHost On for ctpconsole.conf [NBIA-562] Need to add on wiki to create user/pw on user manager on CTP server [NBIA-561] Database Verifier Unverified data is not updated [NBIA-574] Cedara view image has error pop up message [NBIA-576] Need to put DB schema on wiki [NBIA-577] The change for DICOM checksum in database in NBIA 5.1 release breaks CTP DB Verifier. [NBIA-578] Remove Reconstruction Diameter criteria from Advance Search screen. [NBIA-579] DICOM check sum should not be get updated in database by DICOM File size corrector [NBIA-581] Available collection list is not sorted [NBIA-588] CTP submission sequence image missing Referenced SOP class UID and Referenced SOP Instance UID [NBIA-591] Sequence image display data is missing after user download it from web [NBIA-585] CTP submission does not anonymize lower lever sequence image [NBIA-590] Submission report page missing Question mark help link [NBIA-596] Sample for querying data service on wiki doesn't work [NBIA-597] Update the Wiki for NBIA Developer Guide Needed [NBIA-599] Add to wiki about user need to update DatabaseVerifier url on CTP Client [NBIA-601] Download Manager couldn't download series which has more than 100 images [NBIA-603] Test transfer client in Grid failed on QA tier and missing files on stage tier [NBIA-604] Test transfer in Grid thrown SQLGrammerException if it has more than 1000 image [NBIA-607] Need to update wiki about installation/upgrade guide 5.1 to the current version 5.2 [NBIA-610] Need to update link that point to wrong place in the current wiki [NBIA-611] Need to give out clear version of UPT on Installation guide [NBIA-612] Need to fix command line to invoke the GUI installer [NBIA-617] "Links that point to ""Page not found"" or ""Deleted"" in wiki" [NBIA-621] Download Manager works very slow in NIAMS STAGING [NBIA-625] Submit XML file to NBIA stage 5.1 are lost [NBIA-626] Need to modify some values in NBIA 5.2 Installation Guide on wiki [NBIA-627] Links need to be updated in wiki [NBIA-628] Few links point to NCICB GForge Download Page which is not maintained and now be outdated. [NBIA-645] MySql link in Wiki needs to be updated to point to 5.1 Version Known Issues/Defects ------------------------ [NBIA-362] Collection Description on search page can be confusing wrt remote nodes [NBIA-429] Java Exception error when add PE/PG for users [NBIA-467] BDA command line installer doesn't always bring out Jboss 5.1 [NBIA-489] Duplicate UID on xml annotation files issue [NBIA-466] "Many times there is no ""Search Image"" buttom to let user search without login" [NBIA-319] NBIA grid client can run out of memory when a large result set is returned for the initial patient search [NBIA-506] System crash when setting a large number of series to visible [NBIA-521] Logon name with embbed dot does not work [NBIA-522] Build Failure on Hudson CI Server [NBIA-531] Search result page session time out or wait long time to load if search by image frame number [NBIA-533] User can’t login after session timeout if another NBIA browser time out in Firefox [NBIA-575] Collection list on simple search page orders incorrectly [NBIA-584] CTP submsssion file number is not match with web submission report if it encounter network connection problem [NBIA-582] NBIA Submission Report Tool Providing Bad Results [NBIA-589] CTP Database Verifier PtID/Date seach are not work properly [NBIA-595] "Download All Item link keep showing 0% downloaded when user download zip file, user need to refresh download page to make file download complete" [NBIA-598] Performing online deletion fails [NBIA-602] Submission report corrected patients/studies/series number is not update after image submitted [NBIA-606] Too many search criteria on dynamic search may result in timeout issue [NBIA-609] Develop contigency plan for NBIA [NBIA-636] Application Support email address configurable [NBIA-614] UPT upgrade to 4.2.3.1 (or higher) [NBIA-619] General Equipment Table not populating after a null value [NBIA-543] Click hyperlink without https in edit shared list page results in http status 404 error [NBIA-640] Downloading images does not work [NBIA-538] Table size is not adjustable with data [NBIA-435] Collection check box couldn't be saved for query search [NBIA-633] Search Results Page: Select all box does not get refreshed when changing to another page [NBIA-633] Java 7u45 on client causes download manager failure See the Jira tracker for the latest use cases (implemented and deferred), existing open defects, community requests, resolutions and feature requests. The following issues are highlighted. https://tracker.nci.nih.gov/browse/NBIA Bug Reports, Feature Requests, And Support ------------------------------------------ Send email to ncicb@pop.nci.nih.gov to request technical support or report a bug or request a new feature. Existing requests and resolution may also be viewed at the NBIA Jira site. Documentation And Files ----------------------- Links to all documentation and files can be found at: https://wiki.nci.nih.gov/display/NBIA/National+Biomedical+Imaging+Archive+-+NBIA NCICB Web Pages --------------- * The NCI Center for Bioinformatics, http://ncicb.nci.nih.gov/ * NCICB Application Support, http://ncicb.nci.nih.gov/support * NCICB Download Center, http://ncicb.nci.nih.gov/download/